Index of /kundaje/marinovg/oak/programs/trinityrnaseq-Trinity-v2.8.4/util/support_scripts

[ICO]NameLast modifiedSizeDescription
[PARENTDIR]Parent Directory  -  
[ ]ExitTester.jar2018-09-12 10:08 8.1K 
[TXT]GG_partitioned_trinity_aggregator.pl2018-09-12 10:08 636  
[TXT]SAM_coordSorted_fragment_Read_coverage_writer.pl2018-09-12 10:08 2.0K 
[TXT]SAM_coordSorted_fragment_coverage_writer2.pl2018-09-12 10:08 3.2K 
[TXT]SAM_extract_properly_mapped_pairs.pl2018-09-12 10:08 817  
[TXT]SAM_extract_uniquely_mapped_reads.pl2018-09-12 10:08 1.2K 
[TXT]SAM_filter_out_unmapped_reads.pl2018-09-12 10:08 952  
[TXT]SAM_ordered_pair_jaccard.pl2018-09-12 10:08 2.5K 
[TXT]SAM_set_transcribed_orient_info.pl2018-09-12 10:08 2.1K 
[TXT]SAM_strand_separator.pl2018-09-12 10:08 1.1K 
[TXT]SAM_to_frag_coords.pl2018-09-12 10:08 8.6K 
[TXT]add_LR_reads_to_iworm_bundle.pl2018-09-12 10:08 1.3K 
[TXT]annotate_chrysalis_welds_with_iworm_names.pl2018-09-12 10:08 1.1K 
[TXT]batch_cmds.pl2018-09-12 10:08 1.5K 
[TXT]bowtie2_wrapper.pl2018-09-12 10:08 8.4K 
[TXT]define_SAM_coverage_partitions2.pl2018-09-12 10:08 1.3K 
[TXT]define_coverage_partitions.pl2018-09-12 10:08 1.4K 
[TXT]eXpress_trans_to_gene_results.pl2018-09-12 10:08 4.7K 
[TXT]ensure_coord_sorted_sam.pl2018-09-12 10:08 2.2K 
[TXT]extract_reads_per_partition.pl2018-09-12 10:08 6.9K 
[TXT]fastQ_to_fastA.pl2018-09-12 10:08 3.0K 
[TXT]fastQ_to_tab.pl2018-09-12 10:08 2.4K 
[TXT]fasta_find_duplicates.pl2018-09-12 10:08 905  
[TXT]fasta_to_tab.pl2018-09-12 10:08 712  
[TXT]filter_iworm_by_min_length_or_cov.pl2018-09-12 10:08 756  
[TXT]filter_transcripts_require_min_cov.pl2018-09-12 10:08 2.8K 
[TXT]fragment_coverage_writer.pl2018-09-12 10:08 1.8K 
[TXT]get_Trinity_gene_to_trans_map.pl2018-09-12 10:08 523  
[TXT]inchworm_transcript_splitter.pl2018-09-12 10:08 4.3K 
[TXT]iworm_LR_to_scaff_pairs.pl2018-09-12 10:08 8.4K 
[TXT]jaccard_fasta_clipper.pl2018-09-12 10:08 1.9K 
[TXT]jaccard_wig_clipper.pl2018-09-12 10:08 7.1K 
[TXT]join_partitions_within_range.pl2018-09-12 10:08 704  
[TXT]kallisto_trans_to_gene_results.pl2018-09-12 10:08 4.5K 
[TXT]merge_pair_and_LR_scaff_links.pl2018-09-12 10:08 1.0K 
[TXT]nbkc_merge_left_right_stats.pl2018-09-12 10:08 3.8K 
[TXT]nbkc_normalize.pl2018-09-12 10:08 2.7K 
[TXT]ordered_fragment_coords_to_jaccard.pl2018-09-12 10:08 18K 
[TXT]outfmt6_add_percent_match_length.pl2018-09-12 10:08 1.8K 
[TXT]partition_chrysalis_graphs_n_reads.pl2018-09-12 10:08 6.2K 
[TXT]partitioned_trinity_aggregator.pl2018-09-12 10:08 3.8K 
[TXT]plugin_install_tests.sh2018-09-12 10:08 416  
[TXT]prep_rnaseq_alignments_for_genome_assisted_assembly.pl2018-09-12 10:08 5.5K 
[TXT]print_butterfly_assemblies.pl2018-09-12 10:08 892  
[TXT]process_GMAP_alignments_gff3_chimeras_ok.pl2018-09-12 10:08 1.6K 
[TXT]revcomp_fasta.pl2018-09-12 10:08 571  
[TXT]run_TMM_scale_matrix.pl2018-09-12 10:08 5.2K 
[TXT]run_UpperQuartileNormalization_matrix.pl2018-09-12 10:08 2.5K 
[TXT]salmon_runner.pl2018-09-12 10:08 607  
[TXT]salmon_trans_to_gene_results.pl2018-09-12 10:08 4.9K 
[TXT]scaffold_iworm_contigs.pl2018-09-12 10:08 8.0K 
[TXT]segment_GFF_partitions.pl2018-09-12 10:08 2.9K 
[DIR]tests/2018-09-12 10:08 -  
[TXT]trinity_install_tests.sh2018-09-12 10:08 1.2K 
[TXT]trinity_installer.py2018-09-12 10:08 842  
[TXT]wig_clip_to_bed.pl2018-09-12 10:08 1.3K 
[TXT]write_partitioned_trinity_cmds.pl2018-09-12 10:08 1.6K 
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