Index of /kundaje/marinovg/oak/programs/trinityrnaseq-Trinity-v2.8.4/sample_data/test_Trinity_Assembly/misc_run_tests

	Name	Last modified	Size	Description
	Parent Directory		-
	__runMe.diff_kmer_length.sh	2018-09-12 10:08	1.6K
	__runMe_CuffFly.sh	2018-09-12 10:08	1.0K
	__runMe_PasaFly.sh	2018-09-12 10:08	1.0K
	__runMe_as_DS.sh	2018-09-12 10:08	343
	__runMe_bowtie_components.sh	2018-09-12 10:08	1.0K
	__runMe_full_cleanup.sh	2018-09-12 10:08	404
	__runMe_include_long_reads.sh	2018-09-12 10:08	524
	__runMe_include_supertranscripts.sh	2018-09-12 10:08	447
	__runMe_no_cleanup.sh	2018-09-12 10:08	397
	__runMe_parallel_iworm_assembly.sh	2018-09-12 10:08	1.0K
	__runMe_piecemeal.sh	2018-09-12 10:08	964
	__runMe_trin_complete.sh	2018-09-12 10:08	428
	__runMe_use_bowtie2.sh	2018-09-12 10:08	469
	__runMe_use_my_ramdisk.sh	2018-09-12 10:08	670
	__runMe_use_workdir.sh	2018-09-12 10:08	723
	__runMe_using_Grid_LSF.sh	2018-09-12 10:08	356
	__runMe_using_Grid_SGE.sh	2018-09-12 10:08	374
	__runMe_w_monitoring.sh	2018-09-12 10:08	743
	__runMe_with_qual_trimming.sh	2018-09-12 10:08	701
	__runMe_with_qual_trimming_and_normalization.sh	2018-09-12 10:08	648
	__runMe_with_qual_trimming_and_normalize_libs_separately.sh	2018-09-12 10:08	1.0K
	__run_PE_samples_file.min_kmer_cov_3.sh	2018-09-12 10:08	239
	__run_PE_samples_file.sh	2018-09-12 10:08	190
	__run_SE_samples_file.sh	2018-09-12 10:08	190
	__run_abundance_estimation_include_antisense.sh	2018-09-12 10:08	876
	__test_runMe.singleFQ.sh	2018-09-12 10:08	1.5K
	__test_runMe_NO_normalization.sh	2018-09-12 10:08	729
	__test_runMe_docker.sh	2018-09-12 10:08	175
	__test_runMe_include_normalization.sh	2018-09-12 10:08	1.0K
	__test_runMe_lenient_path_extension.sh	2018-09-12 10:08	618
	__test_runMe_with_jaccard_clip.sh	2018-09-12 10:08	249
	runMe_no_qualTrim.sh	2018-09-12 10:08	493