# run Trinity via docker

    % docker run --rm -v `pwd`:`pwd` trinityrnaseq/trinityrnaseq Trinity \
      --seqType fq \
      --left `pwd`/test_data/reads.left.fq.gz  \
      --right `pwd`/test_data/reads.right.fq.gz \
      --max_memory 1G --CPU 4 --output `pwd`/trinity_out_dir