ó ƒå˜[c@`sÄddlmZmZmZmZddlZddlZddlZddlZddl Z ddl Z ddl Z ddl Z ddl Z ddlmZejeƒZddd„ƒYZdS(i(tabsolute_importtdivisiontprint_functiontunicode_literalsN(tGraphCycleExceptiontTopological_sortcB`seZdZed„ƒZRS(u… Implementation of Topological Sorting - as per described on wikipedia # https://en.wikipedia.org/wiki/Topological_sorting L ↠Empty list that will contain the sorted elements S ↠Set of all nodes with no incoming edge while S is non-empty do remove a node n from S add n to tail of L for each node m with an edge e from n to m do remove edge e from the graph if m has no other incoming edges then insert m into S if graph has edges then return error (graph has at least one cycle) else return L (a topologically sorted order) cC`s’tjdt|ƒƒtƒ}tƒ}x6|D].}t|jƒƒdkr0|j|ƒq0q0Wx—t|ƒdkrû|jdƒ}|j|ƒt|jƒƒ}xP|D]H}|j |ƒ|j |ƒt|jƒƒdkr¬|j|ƒq¬q¬WqeWxW|D]O}t|jƒƒdks9t|jƒƒdkrt d|j ƒƒ‚qqWd}x/|D]'}|j ƒ|j|ƒ|d7}qcW|S(NuNodes to topo sort: iu#Graph has cycles! offending node: i(tloggertdebugtstrtlisttlentget_prev_nodestappendtpoptget_next_nodeststash_prev_nodetstash_next_nodeRttoStringtrestore_stashed_nodestset_topological_order(t nodes_listtLtStnodetnode_nt n_childrentn_childtidx((s€/oak/stanford/groups/akundaje/marinovg/programs/trinityrnaseq-Trinity-v2.8.4/Analysis/SuperTranscripts/pylib/Topological_sort.pyttopologically_sort*s0        0   (t__name__t __module__t__doc__t staticmethodR(((s€/oak/stanford/groups/akundaje/marinovg/programs/trinityrnaseq-Trinity-v2.8.4/Analysis/SuperTranscripts/pylib/Topological_sort.pyRs((t __future__RRRRtostsystretloggingtargparset collectionstnumpyttimetTNodeRt getLoggerRRR(((s€/oak/stanford/groups/akundaje/marinovg/programs/trinityrnaseq-Trinity-v2.8.4/Analysis/SuperTranscripts/pylib/Topological_sort.pyts"$