ó ƒå˜[c@`s¨ddlmZmZmZmZddlZddlZddlZddlZddl Z ddl Z ddl Z ddl Z ej eƒZddd„ƒYZdS(i(tabsolute_importtdivisiontprint_functiontunicode_literalsNt DP_matrixcB`s,eZdZed„ƒZed„ƒZRS(uQ defines the dynamic programming matrix for the node multiple alignments cC`s‹tƒ}x{td|dƒD]f}g}xJtd|dƒD]5}i|d6|d6dd6dd6}|j|ƒq=W|j|ƒqW|S(Niiuiujiÿÿÿÿubtuscore(tlisttrangetappend(tnum_rowstnum_colst dp_matrixtitrowtjtstruct((sy/oak/stanford/groups/akundaje/marinovg/programs/trinityrnaseq-Trinity-v2.8.4/Analysis/SuperTranscripts/pylib/DP_matrix.pytbuild_DP_matrixs   cC`sŠt|ƒ}t|dƒ}tjdj||ƒƒd}xH|D]@}g|D]}t|dƒ^qO}|dj|ƒd7}qBW|S(NiuMatrix is {} X {}uuscoreu u (tlentloggertdebugtformattstrtjoin(R tnrowtncoltret_textR txtstr_row((sy/oak/stanford/groups/akundaje/marinovg/programs/trinityrnaseq-Trinity-v2.8.4/Analysis/SuperTranscripts/pylib/DP_matrix.pyttoString(s  #(t__name__t __module__t__doc__t staticmethodRR(((sy/oak/stanford/groups/akundaje/marinovg/programs/trinityrnaseq-Trinity-v2.8.4/Analysis/SuperTranscripts/pylib/DP_matrix.pyRs((t __future__RRRRtostsystretloggingtargparset collectionstnumpyttimet getLoggerRRR(((sy/oak/stanford/groups/akundaje/marinovg/programs/trinityrnaseq-Trinity-v2.8.4/Analysis/SuperTranscripts/pylib/DP_matrix.pyts"$