Index of /kundaje/marinovg/oak/programs/trinityrnaseq-Trinity-v2.8.4/Analysis/DifferentialExpression

[ICO]NameLast modifiedSizeDescription
[PARENTDIR]Parent Directory  -  
[TXT]DE_graph_to_dot.pl2018-09-12 10:08 1.0K 
[TXT]DTE_to_DTU.pl2018-09-12 10:08 3.8K 
[ ]GOplot.Rscript2018-09-12 10:08 2.6K 
[ ]Glimma.Trinity.Rscript2018-09-12 10:08 3.1K 
[ ]PtR2018-09-12 10:08 87K 
[DIR]R/2018-09-12 10:08 -  
[TXT]ROKU.pl2018-09-12 10:08 875  
[DIR]TissueEnrichment/2018-09-12 10:08 -  
[TXT]add_annot_to_trans_id.pl2018-09-12 10:08 1.7K 
[ ]add_annotations_to_GO_and_lengths_file.R2018-09-12 10:08 2.7K 
[TXT]add_blastx_hit_to_trinity_id.pl2018-09-12 10:08 1.0K 
[TXT]analyze_diff_expr.pl2018-09-12 10:08 19K 
[TXT]assign_tissue_specific.pl2018-09-12 10:08 1.0K 
[DIR]cluster_sample_data/2018-09-12 10:08 -  
[TXT]compare_gene_trans_DE_ranks.pl2018-09-12 10:08 5.8K 
[TXT]cut_tree_into_clusters.pl2018-09-12 10:08 3.7K 
[TXT]define_clusters_by_cutting_tree.pl2018-09-12 10:08 6.6K 
[TXT]diff_expr_analysis_to_heatmap_html.pl2018-09-12 10:08 3.8K 
[ ]diff_express.cgi2018-09-12 10:08 5.9K 
[TXT]downsample_count_matrix.pl2018-09-12 10:08 3.2K 
[TXT]extract_GO_enriched_genes.pl2018-09-12 10:08 3.8K 
[TXT]filter_diff_expr.pl2018-09-12 10:08 1.0K 
[TXT]filter_matrix_min_sum_rowcounts.pl2018-09-12 10:08 518  
[TXT]get_tissue_enriched_DE_one_vs_all.pl2018-09-12 10:08 1.8K 
[TXT]get_transcript_lengths.pl2018-09-12 10:08 519  
[TXT]identify_diff_isoform_splicing.pl2018-09-12 10:08 6.3K 
[TXT]log2_transform_matrix.pl2018-09-12 10:08 957  
[TXT]log2_transform_median_center_fpkm_matrix.pl2018-09-12 10:08 1.0K 
[TXT]matrix_to_gene_plots.pl2018-09-12 10:08 2.9K 
[TXT]merge_matrices.pl2018-09-12 10:08 2.2K 
[TXT]merge_subclusters.pl2018-09-12 10:08 494  
[DIR]pairwise_summaries/2018-09-12 10:08 -  
[ ]plot_all_DE_MAplots.Rscript2018-09-12 10:08 932  
[ ]plot_all_DE_volcanos.Rscript2018-09-12 10:08 934  
[TXT]plot_expression_patterns.pl2018-09-12 10:08 3.1K 
[ ]plot_log2FC_hist.Rscript2018-09-12 10:08 239  
[TXT]prep_n_run_GOplot.pl2018-09-12 10:08 6.8K 
[TXT]prune_isoforms_fasta.pl2018-09-12 10:08 8.5K 
[TXT]prune_isoforms_gtf.pl2018-09-12 10:08 1.9K 
[TXT]rank_roku_by_expr.pl2018-09-12 10:08 1.2K 
[TXT]remove_batch_effects_from_count_matrix.pl2018-09-12 10:08 3.3K 
[TXT]rename_matrix_column_labels.pl2018-09-12 10:08 1.3K 
[TXT]rename_matrix_feature_identifiers.pl2018-09-12 10:08 1.3K 
[TXT]replicates_to_sample_averages_matrix.pl2018-09-12 10:08 4.5K 
[TXT]run_DE_analysis.pl2018-09-12 10:08 29K 
[TXT]run_GOseq.pl2018-09-12 10:08 9.5K 
[TXT]run_TMM_normalization_write_FPKM_matrix.pl2018-09-12 10:08 6.8K 
[TXT]stratify_diff_expression.pl2018-09-12 10:08 838  
[TXT]subcluster_to_canvasXpress_html.make_index_html.pl2018-09-12 10:08 537  
[TXT]subcluster_to_canvasXpress_html.pl2018-09-12 10:08 3.6K 
[TXT]summarize_diff_expr_across_min_threshold_ranges.pl2018-09-12 10:08 1.4K 
[ ]validate_UP_subset.Rscript2018-09-12 10:08 1.6K 
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