project(read_cloud_statistics CXX)

include_directories(${CMAKE_CURRENT_SOURCE_DIR})

add_executable(read_cloud_statistics main.cpp
               read_cloud_statistics_extractor.cpp
                ../spades/distance_estimation.cpp contig_path_analyzer.hpp
                contracted_graph_stats/contracted_graph_local_statistics.hpp scaffolder_validation.hpp scaffold_graph_utils.hpp
                scaffolder_statistics/scaffolder_stats.hpp ../spades/scaffold_graph_construction_stage.cpp
                ../spades/scaffold_graph_construction_stage.hpp ../spades/scaffolder_analysis_stage.cpp
                ../spades/scaffolder_analysis_stage.hpp scaffolder_statistics/gap_closer_stats.hpp
                statistics_launcher.hpp
                scaffolder_statistics/gap_closer_analyzer.hpp path_cluster_test.hpp scaffolder_statistics/non_reference_stats.hpp)

target_link_libraries(read_cloud_statistics ConsensusCore common_modules nlopt BamTools ssw ${COMMON_LIBRARIES})

if (SPADES_STATIC_BUILD)
    set_target_properties(read_cloud_statistics PROPERTIES LINK_SEARCH_END_STATIC 1)
endif()



install(TARGETS read_cloud_statistics
        DESTINATION bin
        COMPONENT runtime)
install(DIRECTORY "${SPADES_CFG_DIR}/read_cloud_statistics"
        DESTINATION share/spades/configs
        FILES_MATCHING PATTERN "*.info")