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aphEED2Ev_ZTVN9omnigraph28NeighbourhoodFindingSplitterIN14debruijn_graph13DeBruijnGraphEEE_ZN9omnigraph28NeighbourhoodFindingSplitterIN14debruijn_graph13DeBruijnGraphEED1Ev_ZNSt23_Sp_counted_ptr_inplaceIN11path_extend21PathExtenderGapCloserESaIS1_ELN9__gnu_cxx12_Lock_policyE2EE10_M_disposeEv_ZNSt23_Sp_counted_ptr_inplaceIN11path_extend17MatePairGapCloserESaIS1_ELN9__gnu_cxx12_Lock_policyE2EE10_M_disposeEv_ZNK13visualization13graph_colorer21CompositeGraphColorerIN11path_extend14scaffold_graph13ScaffoldGraphEE8GetValueB5cxx11ENS3_14ScaffoldVertexE_ZNSt23_Sp_counted_ptr_inplaceIN11path_extend35ReadCloudGapExtensionChooserFactoryESaIS1_ELN9__gnu_cxx12_Lock_policyE2EE10_M_disposeEv_ZN11path_extend25CompositeExtensionChooserD2Ev_ZTVN11path_extend16ExtensionChooserE_ZN11path_extend25CompositeExtensionChooserD1Ev_ZN11path_extend23CompositeChooserFactoryD0Ev_ZN9omnigraph28NeighbourhoodFindingSplitterIN14debruijn_graph13DeBruijnGraphEED0Ev_ZNK13visualization13graph_colorer21CompositeGraphColorerIN11path_extend14scaffold_graph13ScaffoldGraphEE8GetValueB5cxx11ENS4_12ScaffoldEdgeE_ZN11path_extend25CompositeExtensionChooserD0Ev_ZN4func14TypedPredicateIRKN11path_extend17BidirectionalPathEE19TypedPredicateModelINS_11AndOperatorIS4_EEED2Ev_ZTVN4func14TypedPredicateIRKN11path_extend17BidirectionalPathEE19TypedPredicateModelINS_11AndOperatorIS4_EEEE_ZN4func14TypedPredicateIRKN11path_extend17BidirectionalPathEE19TypedPredicateModelINS_11AndOperatorIS4_EEED1Ev_ZN4func14TypedPredicateIRKN11path_extend17BidirectionalPathEE19TypedPredicateModelINS_11AndOperatorIS4_EEED0Ev_ZThn8_N13visualization13graph_colorer21CompositeGraphColorerIN14debruijn_graph13DeBruijnGraphEED0Ev_ZN13visualization13graph_colorer21CompositeGraphColorerIN14debruijn_graph13DeBruijnGraphEED0Ev_ZThn8_N13visualization13graph_colorer21CompositeGraphColorerIN14debruijn_graph13DeBruijnGraphEED1Ev_ZN4func3AndIN11path_extend21IsolatedPathConditionENS_14TypedPredicateIRKNS1_17BidirectionalPathEEES6_S6_vEENS3_IT1_EET_T0__ZTVSt23_Sp_counted_ptr_inplaceIN4func14TypedPredicateIRKN11path_extend17BidirectionalPathEE19TypedPredicateModelINS2_21IsolatedPathConditionEEESaIS9_ELN9__gnu_cxx12_Lock_policyE2EE_ZTVN4func14TypedPredicateIRKN11path_extend17BidirectionalPathEE19TypedPredicateModelINS1_21IsolatedPathConditionEEE_ZTVN11path_extend21IsolatedPathConditionE_ZTVSt23_Sp_counted_ptr_inplaceIN4func14TypedPredicateIRKN11path_extend17BidirectionalPathEE19TypedPredicateModelINS0_11AndOperatorIS5_EEEESaISA_ELN9__gnu_cxx12_Lock_policyE2EE_ZTv0_n24_NK13visualization13graph_colorer21CompositeGraphColorerIN11path_extend14scaffold_graph13ScaffoldGraphEE8GetValueB5cxx11ENS4_12ScaffoldEdgeE_ZThn8_N13visualization13graph_colorer21CompositeGraphColorerIN11path_extend14scaffold_graph13ScaffoldGraphEED0Ev_ZN13visualization13graph_colorer21CompositeGraphColorerIN11path_extend14scaffold_graph13ScaffoldGraphEED0Ev_ZThn8_N13visualization13graph_colorer21CompositeGraphColorerIN11path_extend14scaffold_graph13ScaffoldGraphEED1Ev_ZN4func3AndIN11path_extend19LengthPathConditionENS1_21CoveragePathConditionERKNS1_17BidirectionalPathES6_vEENS_14TypedPredicateIT1_EET_T0__ZTVSt23_Sp_counted_ptr_inplaceIN4func14TypedPredicateIRKN11path_extend17BidirectionalPathEE19TypedPredicateModelINS2_21CoveragePathConditionEEESaIS9_ELN9__gnu_cxx12_Lock_policyE2EE_ZTVN4func14TypedPredicateIRKN11path_extend17BidirectionalPathEE19TypedPredicateModelINS1_21CoveragePathConditionEEE_ZTVN11path_extend21CoveragePathConditionE_ZTVSt23_Sp_counted_ptr_inplaceIN4func14TypedPredicateIRKN11path_extend17BidirectionalPathEE19TypedPredicateModelINS2_19LengthPathConditionEEESaIS9_ELN9__gnu_cxx12_Lock_policyE2EE_ZTVN4func14TypedPredicateIRKN11path_extend17BidirectionalPathEE19TypedPredicateModelINS1_19LengthPathConditionEEE_ZTVN11path_extend19LengthPathConditionE_ZN4func3AndIN11path_extend21CoveragePathConditionENS1_19LengthPathConditionERKNS1_17BidirectionalPathES6_vEENS_14TypedPredicateIT1_EET_T0__ZNSt8_Rb_treeIN10restricted12pure_pointerIN9omnigraph10PairedEdgeIN14debruijn_graph18DeBruijnDataMasterEEEEESt4pairIKS7_mESt10_Select1stISA_ESt4lessIS7_ESaISA_EE8_M_eraseEPSt13_Rb_tree_nodeISA_E_ZNSt11_Deque_baseIN10restricted12pure_pointerIN9omnigraph10PairedEdgeIN14debruijn_graph18DeBruijnDataMasterEEEEESaIS7_EED2Ev_ZNSt11_Deque_baseIN10restricted12pure_pointerIN9omnigraph10PairedEdgeIN14debruijn_graph18DeBruijnDataMasterEEEEESaIS7_EED1Ev_ZNSt11_Deque_baseImSaImEED2Ev_ZNSt11_Deque_baseImSaImEED1Ev_ZN11path_extend17BidirectionalPathD2Ev_ZTVN11path_extend17BidirectionalPathE_ZN11path_extend17BidirectionalPathD1Ev_ZN11path_extend17BidirectionalPathD0Ev_ZNKSt15_Deque_iteratorImRmPmEplEl_ZNKSt15_Deque_iteratorIN10restricted12pure_pointerIN9omnigraph10PairedEdgeIN14debruijn_graph18DeBruijnDataMasterEEEEERS7_PS7_EplEl_ZNK11path_extend17BidirectionalPath11CompareFromEmRKS0__ZNK11path_extend12LoopDetector19PrevEdgeInShortLoopEv_ZNK11path_extend21CoveragePathCondition5CheckERKNS_17BidirectionalPathE_ZNK11path_extend21CoverageLoopEstimator24EstimateSimpleCycleCountERKNS_17BidirectionalPathEN10restricted12pure_pointerIN9omnigraph10PairedEdgeIN14debruijn_graph18DeBruijnDataMasterEEEEESB__ZN11path_extend13LoopTraverser20IsEndInsideComponentERKNS_17BidirectionalPathERKSt3setIN10restricted12pure_pointerIN9omnigraph12PairedVertexIN14debruijn_graph18DeBruijnDataMasterEEEEESt4lessISC_ESaISC_EE_ZNK11path_extend17BidirectionalPath13CommonEndSizeERKS0__ZNKSt15_Deque_iteratorIN11path_extend3GapERS1_PS1_EplEl_ZNK11path_extend19LengthPathCondition5CheckERKNS_17BidirectionalPathE_ZZN11path_extend13PathContainer12SortByLengthEbENKUlRKSt4pairIPNS_17BidirectionalPathES3_ES6_E_clES6_S6__ZNK4func14TypedPredicateIRKN11path_extend17BidirectionalPathEE19TypedPredicateModelINS1_19LengthPathConditionEEclES4__ZNK11path_extend20OverlapFindingHelper14TryExtendToEndERKNS_17BidirectionalPathERm_ZNK11path_extend17BidirectionalPath5PrintERSo_ZNK11path_extend17BidirectionalPath3strB5cxx11Ev_ZN11path_extend12ContigWriter14WriteScaffoldsERKSt6vectorINS_12ScaffoldInfoESaIS2_EERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE_ZNK11path_extend20OverlapFindingHelper12ComparePathsERKNS_17BidirectionalPathES3_m_ZNK11path_extend14OverlapRemover15AnalyzeOverlapsERKNS_17BidirectionalPathES3_bb_ZNSt6vectorIPN11path_extend12PathListenerESaIS2_EE17_M_realloc_insertIJRKS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT__ZNSt8_Rb_treeIN11path_extend14scaffold_graph14ScaffoldVertexES2_St9_IdentityIS2_ESt4lessIS2_ESaIS2_EE8_M_eraseEPSt13_Rb_tree_nodeIS2_E_ZNSt8_Rb_treeIN11path_extend14scaffold_graph14ScaffoldVertexESt4pairIKS2_mESt10_Select1stIS5_ESt4lessIS2_ESaIS5_EE8_M_eraseEPSt13_Rb_tree_nodeIS5_E_ZNSt23_Sp_counted_ptr_inplaceIN11path_extend14scaffold_graph13ScaffoldGraphESaIS2_ELN9__gnu_cxx12_Lock_policyE2EE10_M_disposeEv_ZNSt8_Rb_treeImmSt9_IdentityImESt4lessImESaImEE8_M_eraseEPSt13_Rb_tree_nodeImE_ZNSt8_Rb_treeIPN11path_extend17BidirectionalPathES2_St9_IdentityIS2_ENS0_14PathComparatorESaIS2_EE8_M_eraseEPSt13_Rb_tree_nodeIS2_E_ZN11path_extend16GraphCoverageMapD2Ev_ZTVN11path_extend16GraphCoverageMapE_ZN11path_extend16GraphCoverageMapD1Ev_ZN11path_extend16GraphCoverageMapD0Ev_ZN11path_extend25LoopDetectingPathExtenderD2Ev_ZTVN11path_extend25LoopDetectingPathExtenderE_ZN11path_extend25LoopDetectingPathExtenderD1Ev_ZNK11path_extend21SimpleExtenderFactory14CreateExtenderERKNS_17BidirectionalPathEm_ZTVSt23_Sp_counted_ptr_inplaceIN11path_extend14SimpleExtenderESaIS1_ELN9__gnu_cxx12_Lock_policyE2EE_ZTVSt23_Sp_counted_ptr_inplaceIN11path_extend21CoverageLoopEstimatorESaIS1_ELN9__gnu_cxx12_Lock_policyE2EE_ZTVN11path_extend21CoverageLoopEstimatorE_ZTVN11path_extend14SimpleExtenderE_ZTVSt23_Sp_counted_ptr_inplaceIN11path_extend21CombinedLoopEstimatorESaIS1_ELN9__gnu_cxx12_Lock_policyE2EE_ZN11path_extend25LoopDetectingPathExtenderD0Ev_ZN11path_extend14SimpleExtenderD2Ev_ZN11path_extend14SimpleExtenderD1Ev_ZN11path_extend14SimpleExtenderD0Ev_ZNKSt8_Rb_treeIPN11path_extend17BidirectionalPathES2_St9_IdentityIS2_ENS0_14PathComparatorESaIS2_EE5countERKS2__ZNSt8_Rb_treeIiSt4pairIKidESt10_Select1stIS2_ESt4lessIiESaIS2_EE8_M_eraseEPSt13_Rb_tree_nodeIS2_E_ZNSt8_Rb_treeISt4pairImmES0_IKS1_St3mapIidSt4lessIiESaIS0_IKidEEEESt10_Select1stISA_ES4_IS1_ESaISA_EE8_M_eraseEPSt13_Rb_tree_nodeISA_E_ZN11path_extend26PairedInfoLibraryWithIndexIRKN9omnigraph2de11PairedIndexIN14debruijn_graph13DeBruijnGraphENS2_11PointTraitsENS2_14safe_btree_mapEEEED0Ev_ZTVN11path_extend17PairedInfoLibraryE_ZN11path_extend26PairedInfoLibraryWithIndexIRKN9omnigraph2de11PairedIndexIN14debruijn_graph13DeBruijnGraphENS2_11PointTraitsENS2_14safe_btree_mapEEEED2Ev_ZN11path_extend26PairedInfoLibraryWithIndexIRKN9omnigraph2de11PairedIndexIN14debruijn_graph13DeBruijnGraphENS2_11PointTraitsENS2_14safe_btree_mapEEEED1Ev_ZN11path_extend26PairedInfoLibraryWithIndexIRKN9omnigraph2de11PairedIndexIN14debruijn_graph13DeBruijnGraphENS2_14RawPointTraitsENS2_9btree_mapEEEED2Ev_ZN11path_extend26PairedInfoLibraryWithIndexIRKN9omnigraph2de11PairedIndexIN14debruijn_graph13DeBruijnGraphENS2_14RawPointTraitsENS2_9btree_mapEEEED1Ev_ZN11path_extend26PairedInfoLibraryWithIndexIRKN9omnigraph2de11PairedIndexIN14debruijn_graph13DeBruijnGraphENS2_14RawPointTraitsENS2_9btree_mapEEEED0Ev_ZNSt8_Rb_treeIN10restricted12pure_pointerIN9omnigraph10PairedEdgeIN14debruijn_graph18DeBruijnDataMasterEEEEES7_St9_IdentityIS7_ESt4lessIS7_ESaIS7_EE8_M_eraseEPSt13_Rb_tree_nodeIS7_E_ZN11path_extend28ScaffoldingUniqueEdgeStorageC2Ev_ZN11path_extend28ScaffoldingUniqueEdgeStorageC1Ev_ZN11path_extend10UniqueDataD2Ev_ZN11path_extend10UniqueDataD1Ev_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_N14debruijn_graph14ChromosomeInfoEESt10_Select1stISA_ESt4lessIS5_ESaISA_EE8_M_eraseEPSt13_Rb_tree_nodeISA_E_ZN14debruijn_graph24GenomeConsistenceCheckerD2Ev_ZN14debruijn_graph24GenomeConsistenceCheckerD1Ev_ZNSt8_Rb_treeIN10restricted12pure_pointerIN9omnigraph12PairedVertexIN14debruijn_graph18DeBruijnDataMasterEEEEESt4pairIKS7_mESt10_Select1stISA_ESt4lessIS7_ESaISA_EE8_M_eraseEPSt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26printing_parameter_storage16ParameterStorageIN10restricted12pure_pointerIN9omnigraph10PairedEdgeIN14debruijn_graph18DeBruijnDataMasterEEEEENSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEEE_ZTIN13visualization26printing_parameter_storage16ParameterStorageIN10restricted12pure_pointerIN9omnigraph10PairedEdgeIN14debruijn_graph18DeBruijnDataMasterEEEEENSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEEE_ZTSN13visualization13graph_colorer14ElementColorerIN10restricted12pure_pointerIN9omnigraph10PairedEdgeIN14debruijn_graph18DeBruijnDataMasterEEEEEEE_ZTIN13visualization13graph_colorer14ElementColorerIN10restricted12pure_pointerIN9omnigraph10PairedEdgeIN14debruijn_graph18DeBruijnDataMasterEEEEEEE_ZTSN13visualization13graph_colorer12GraphColorerIN14debruijn_graph13DeBruijnGraphEEE_ZTIN13visualization13graph_colorer12GraphColorerIN14debruijn_graph13DeBruijnGraphEEE_ZTSN9omnigraph27AbstractNeighbourhoodFinderIN14debruijn_graph13DeBruijnGraphEEE_ZTIN9omnigraph27AbstractNeighbourhoodFinderIN14debruijn_graph13DeBruijnGraphEEE_ZTSN13visualization13graph_labeler20AbstractGraphLabelerIN14debruijn_graph13DeBruijnGraphEEE_ZTIN13visualization13graph_labeler20AbstractGraphLabelerIN14debruijn_graph13DeBruijnGraphEEE_ZTSN13visualization13graph_labeler15StrGraphLabelerIN14debruijn_graph13DeBruijnGraphEEE_ZTIN13visualization13graph_labeler15StrGraphLabelerIN14debruijn_graph13DeBruijnGraphEEE_ZTSN11path_extend16PathGraphLabelerIN14debruijn_graph13DeBruijnGraphEEE_ZTIN11path_extend16PathGraphLabelerIN14debruijn_graph13DeBruijnGraphEEE_ZTSN13visualization13graph_labeler20CoverageGraphLabelerIN14debruijn_graph13DeBruijnGraphEEE_ZTIN13visualization13graph_labeler20CoverageGraphLabelerIN14debruijn_graph13DeBruijnGraphEEE_ZTSN13visualization13graph_labeler19EdgePosGraphLabelerIN14debruijn_graph13DeBruijnGraphEEE_ZTIN13visualization13graph_labeler19EdgePosGraphLabelerIN14debruijn_graph13DeBruijnGraphEEE_ZTSN13visualization13graph_labeler16CompositeLabelerIN14debruijn_graph13DeBruijnGraphEEE_ZTIN13visualization13graph_labeler16CompositeLabelerIN14debruijn_graph13DeBruijnGraphEEE_ZTSN13visualization13vertex_linker12VertexLinkerIN14debruijn_graph13DeBruijnGraphEEE_ZTIN13visualization13vertex_linker12VertexLinkerIN14debruijn_graph13DeBruijnGraphEEE_ZTSN13visualization26printing_parameter_storage19MapParameterStorageIN10restricted12pure_pointerIN9omnigraph12PairedVertexIN14debruijn_graph18DeBruijnDataMasterEEEEENSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEEE_ZTIN13visualization26printing_parameter_storage19MapParameterStorageIN10restricted12pure_pointerIN9omnigraph12PairedVertexIN14debruijn_graph18DeBruijnDataMasterEEEEENSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEEE_ZTSN13visualization13vertex_linker15MapVertexLinkerIN14debruijn_graph13DeBruijnGraphEEE_ZTIN13visualization13vertex_linker15MapVertexLinkerIN14debruijn_graph13DeBruijnGraphEEE_ZTSN13visualization13vertex_linker16EmptyGraphLinkerIN14debruijn_graph13DeBruijnGraphEEE_ZTIN13visualization13vertex_linker16EmptyGraphLinkerIN14debruijn_graph13DeBruijnGraphEEE_ZTSN9omnigraph10JSIteratorINS_14GraphComponentIN14debruijn_graph13DeBruijnGraphEEEEE_ZTIN9omnigraph10JSIteratorINS_14GraphComponentIN14debruijn_graph13DeBruijnGraphEEEEE_ZTSN9omnigraph13GraphSplitterIN14debruijn_graph13DeBruijnGraphEEE_ZTIN9omnigraph13GraphSplitterIN14debruijn_graph13DeBruijnGraphEEE_ZTSN13visualization26printing_parameter_storage16ParameterStorageIN11path_extend14scaffold_graph13ScaffoldGraph12ScaffoldEdgeENSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEEE_ZTIN13visualization26printing_parameter_storage16ParameterStorageIN11path_extend14scaffold_graph13ScaffoldGraph12ScaffoldEdgeENSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEEE_ZTSN13visualization13graph_colorer14ElementColorerIN11path_extend14scaffold_graph13ScaffoldGraph12ScaffoldEdgeEEE_ZTIN13visualization13graph_colorer14ElementColorerIN11path_extend14scaffold_graph13ScaffoldGraph12ScaffoldEdgeEEE_ZTSN13visualization26printing_parameter_storage16ParameterStorageIN11path_extend14scaffold_graph14ScaffoldVertexENSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEEE_ZTIN13visualization26printing_parameter_storage16ParameterStorageIN11path_extend14scaffold_graph14ScaffoldVertexENSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEEE_ZTSN13visualization13graph_colorer14ElementColorerIN11path_extend14scaffold_graph14ScaffoldVertexEEE_ZTIN13visualization13graph_colorer14ElementColorerIN11path_extend14scaffold_graph14ScaffoldVertexEEE_ZTSN11path_extend14scaffold_graph24ScaffoldGraphConstructorE_ZTIN11path_extend14scaffold_graph24ScaffoldGraphConstructorE_ZTSN11path_extend14scaffold_graph28BaseScaffoldGraphConstructorE_ZTIN11path_extend14scaffold_graph28BaseScaffoldGraphConstructorE_ZTSN11path_extend26GapExtensionChooserFactoryE_ZTIN11path_extend26GapExtensionChooserFactoryE_ZTSN11path_extend18SameChooserFactoryE_ZTIN11path_extend18SameChooserFactoryE_ZTSN11path_extend23CompositeChooserFactoryE_ZTIN11path_extend23CompositeChooserFactoryE_ZTS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1434 ` pe_config_struct.cpp.o/ launch_support.cpp.o/ extenders_logic.cpp.o/ extension_chooser2015.cpp.o/ scaffold_graph.cpp.o/ scaffold_graph_constructor.cpp.o/ scaffold_graph_visualizer.cpp.o/ connection_condition2015.cpp.o/ path_polisher.cpp.o/ scaffold_vertex.cpp.o/ read_cloud_connection_conditions.cpp.o/ scaffold_graph_construction_pipeline.cpp.o/ scaffold_graph_storage.cpp.o/ scaffold_graph_validation.cpp.o/ transition_extractor.cpp.o/ scaffold_graph_extractor.cpp.o/ scaffold_graph_polisher.cpp.o/ transitions.cpp.o/ scaffold_vertex_predicates.cpp.o/ path_cluster_helper.cpp.o/ pe_extraction.cpp.o/ predicate_builders.cpp.o/ path_scaffolder.cpp.o/ containment_index_threshold_finder.cpp.o/ read_cloud_polisher_support.cpp.o/ construction_callers.cpp.o/ scaffold_graph_storage_constructor.cpp.o/ cloud_scaffold_graph_gap_closer.cpp.o/ scaffold_graph_gap_closer.cpp.o/ secondary_stats_estimators.cpp.o/ candidate_selectors.cpp.o/ entry_collectors.cpp.o/ path_cluster_statistics.cpp.o/ transition_subgraph_validation.cpp.o/ scaffold_graph_path_cleaner.cpp.o/ reference_path_index.cpp.o/ path_cluster_validation.cpp.o/ cloud_check_statistics.cpp.o/ component_validation.cpp.o/ long_edge_dataset.cpp.o/ perfect_transitions.cpp.o/ perfect_clouds.cpp.o/ coverage_break_analysis.cpp.o/ path_scaffolder_analyzer.cpp.o/ contracted_graph_scaffolder.cpp.o/ contracted_gfa_writer.cpp.o/ short_edge_dataset.cpp.o/ split_index_statistics.cpp.o/ /0 0 0 0 644 215984 ` ELF>@@dchijklmnqropstuvwxyz{|~     !"#$%&'()*+,-./0123456789:;<=>?@ABCDEFGHIJKLMNOPQRSTUVWXYZ[\ATUISHHdH%(HD$1Hu HHL)HH$wDHUHHugA$HUH$HEHD$dH3%(uSH[]A\1HHH$HEHUHLHHUHtH=SHGHHHHHtHHt$Ht$HHH[fAWAVAUATIUSHHHnHHII@LeMtQMI@tHIt$Ht H@tIt$HtH@tLI|$IGH9tLLeMtTMI@tKIt$HtH@tLNIt$HtH@tL6I|$IGH9tLH}IFH9tLHkPHII@LeMtTMI@tKIt$HtH@tLIt$HtH@tLI|$IGH9tLLeMtTMI@tKIt$HtH@tL`It$HtH@tLHI|$IGH9tLH}IFH9tLH;HCH9tHH[]A\A]A^A_ff.AWAVIAUATHUSIHHHH|$dH%(HD$81HoH<$Hl$IIGIGI}1Hl$IHD$H;D$Hl$LutHT$ I9D$(HD$Lt$D(HI;]IED$A uH<$H5tII;HtHGHHt$HT$HIH IHT$H<$H 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In file '' on line . Message ''.scaffolding_modenormalize_weightoverlap_removalmulti_path_extendextension_optionsmate_pair_optionsscaffoldercoordinated_coverageuse_coordinated_coveragescaffolding2015scaffold_graphpath_cleaning_presetsdefaultpath_cleaning_path_cleaninggenome_consistency_checkeruniqueness_analyserloop_traversalsimple_coverage_resolverdebug_outputvisualizeparamslong_readspath_extend@:ZINj WIup1*~L'\W.c^1f Chbax*~L'\W.c^1fP#A rb|A      rb|M`=N{=N{#=N{A rb|#=N{.=N{A rb|M`%]S.=O|az#=N{f<L9=N{.=N{az.=O|#=N{9<N{J[   YQC$f&&&&''&%''%'(((pp$   @  @ ''=gw  !!!!!!!!             ! 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%(LH([]A\A]A^A_LCPMA9hD$Hk(H9k0D$@HC8LLD$(LL$0HhHHDHLD$(LL$0H(D$@Hl$HIY(ID$(HEI9i8u IA8HID$0ID$8Il$(HHH9tyLLHH9I@HHHrH9sHHHHHHHHH"HHHHHHH9ufHLT$ID$@I@M;APuIAPf.IID$HID$PMD$@IQ@HH9txLLHH9I@ HHHrH9H HHHHHHHH"HIQ@HHHHH9uHIF(H]PHUHE@H@HH9ht HHHH9CtH;XHD'9HSHJ@LB@gHHHHI9PHBPH_%  I~(e;k \Hk(I9i0D$@D$I9I7HHC(uHHH HH95Hk0HoHH;Pt DHH(HH9EtH(LHLD$(LL$8HT$0LD$(HLLD$(HT$0LL$8`H}8= HT$HHIY(ID$(H9HE I9i0IA0IQ@HH@r 9}!HBHHLH@BH‹r 9|HBPfIQ@H2H@(r 9~HBHHtH@tH‹r 9HBPHu99LB@XIhI9IF(}@HHEHuHLHAH9ID$9LB@~D$LC@It, Type>::type boost::property_tree::basic_ptree::get_value(Translator) const [with Type = int; Translator = boost::property_tree::stream_translator, std::allocator, int>; Key = std::__cxx11::basic_string; Data = std::__cxx11::basic_string; KeyCompare = std::less >; typename boost::enable_if, Type>::type = int]void path_extend::load(path_extend::pe_config::ParamSetT::ScaffolderOptionsT&, const ptree&, bool)typename boost::enable_if, Type>::type boost::property_tree::basic_ptree::get_value(Translator) const [with Type = long unsigned int; Translator = boost::property_tree::stream_translator, std::allocator, long unsigned int>; Key = std::__cxx11::basic_string; Data = std::__cxx11::basic_string; KeyCompare = std::less >; typename boost::enable_if, Type>::type = long unsigned int]typename boost::enable_if, Type>::type boost::property_tree::basic_ptree::get_value(Translator) const [with Type = bool; Translator = boost::property_tree::stream_translator, std::allocator, bool>; Key = std::__cxx11::basic_string; Data = std::__cxx11::basic_string; KeyCompare = std::less >; typename boost::enable_if, Type>::type = bool]typename boost::enable_if, Type>::type boost::property_tree::basic_ptree::get_value(Translator) const [with Type = double; Translator = boost::property_tree::stream_translator, std::allocator, double>; Key = std::__cxx11::basic_string; Data = std::__cxx11::basic_string; KeyCompare = std::less >; typename boost::enable_if, Type>::type = double]static path_extend::scaffolding_mode path_extend::pe_config::scaffolding_mode_id(std::__cxx11::string)typename Translator::external_type boost::property_tree::string_path::reduce() [with String = std::__cxx11::basic_string; Translator = boost::property_tree::id_translator >; typename Translator::external_type = std::__cxx11::basic_string]boost::property_tree::basic_ptree& boost::property_tree::basic_ptree::get_child(const path_type&) [with Key = std::__cxx11::basic_string; Data = std::__cxx11::basic_string; KeyCompare = std::less >; boost::property_tree::basic_ptree::path_type = boost::property_tree::string_path, boost::property_tree::id_translator > 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HH[f.SHHdH%(HD$1HHpHv HHpHHL$dH3 %(u HH[HH`HW H9W0t G(8G8HHWHH!HF H+BH9GSHH~H5H9t?*tuHC[1[SHH~H5H9t?*tuHC[1[SHH~H5H9t?*tuHC[1[SHH~H5H9t?*tuHC[1[SHH~H5H9t?*tuHC[1[SHH~H5H9t?*tuHC[1[SHH~H5H9t?*tuHC[1[SHH~H5H9t?*tuHC[1[SHH~H5H9t?*tuHC[1[SHH~H5H9t?*tuHC[1[SHH~H5H9t?*tuHC[1[SHH~H5H9t?*tuHC[1[SHH~H5H9t?*tuHC[1[SHH~H5H9t?*tuHC[1[SHH~H5H9t?*tuHC[1[SHH~H5H9t?*tuHC[1[SHH~H5H9t?*tuHC[1[SHH~H5H9t?*tuHC[1[SHH~H5H9t?*tuHC[1[SHH~H5H9t?*tuHC[1[SHH~H5H9t?*tuHC[1[SHH~H5H9t?*tuHC[1[SHH~H5H9t?*tuHC[1[SHH~H5H9t?*tuHC[1[SHH~H5H9t?*tuHC[1[SHH~H5H9t?*tuHC[1[SHH~H5H9t?*tuHC[1[SHH~H5H9t?*tuHC[1[SHH~H5H9t?*tuHC[1[SHH~H5H9t?*tuHC[1[SHH~H5H9t?*tuHC[1[SHH~H5H9t?*tuHC[1[0`@@fDH@fDH0(Xp hH0H0@@@ @Pxx(0(08(  AVAUIATUISHHH@Hv@dH%(HD$81IHLPH$HD$H9HH)HtbIuPH|$ LHHPHD$ H<$HHD$(HHCHD$0HCtHH\$8dH3%(uAH@[]A\A]A^DHCHD$HHCfDIuPH|$ LHHPH<$HHtH5h}AUATIUSHHH8dH%(HD$(1HLd$HD$HD$HD$ LP@u8H|$HtD$D$HL$(dH3 %(u$H8[]A\A]DHLLHHPHH|$HHtH IQHHHHt HSHHHHtH߾ [HHHSHHH߾[HSHHHHGHHtHP HHH[DHSHHGHHHHtHP HH{HC[H`0HV@H9VPHDNHtNH:IHL!Eu&LJLHIHHV@HxLHLHHHy8LI@LH!D8NXuHV HL MI!Iz8II!Ȁ~(t;I#H8MR@IHI#HHxLPLAHIHV LHHLRLAUATUSHHHO0HG HQL LhH9HHG HHHVH9HHHHCxHQH9HHCxHH9tH@@ HH9t'H}HLLHHPH9uH[]A\A]DH(HC8HPH@HS8HHC(HC HS0 HHHPH@HHHHHDHHHPH@HHHHCxHH9AVLwAUIATIL9USLuRHL)uPHA,$I9t:+A:,$|SHC@8|CHȈPPHH@8|@(HI9u[]A\A]A^LLfDH@(USHHHHHPuH1[]DH}HHH@H[]HF H9F@}SHGHHH9u$H_H5HߺH[HOHHSHGHHH9u$H_H5HߺH[HOHHbasic_string::_M_construct null not valid/srv/scratch/marinovg/spades-cloudspades-paper/assembler/src/common/assembly_graph/core/order_and_law.hpp/srv/scratch/marinovg/spades-cloudspades-paper/assembler/src/common/modules/path_extend/pipeline/launcher.cppTry to delete paths with interstand bulgesdeleted paths with interstand bulges/srv/scratch/marinovg/spades-cloudspades-paper/assembler/src/common/assembly_graph/paths/bidirectional_path.hppAutodetecting unique edge set parameters...Minimal unique edge length set to the smallest MP library IS: median coverage for edges longer than Coverage is not uniform, we do not rely on coverage for long edge uniquenessUnique edge set constructed with parameters from config : length Constructing scaffold graph from set of size Will add extenders for length Will add final extenders for length Filling backbone edges for long reads scaffolding...Removing fake unique with paired-end libsUsing read cloud path polisherConnection relative coverage threshold: Creating main extenders, unique edge length = Will not use new long read scaffolding algorithm in this modeWill not use read cloud path extend in this modeWill not use mate-pairs is this modeExSPAnder repeat resolving tool startedExSPAnder repeat resolving tool finishedATUSHt5u_HHtWH;HCH9tH߾ [1]A\L& HH@HHEI4$IT$HH+[1]A\f.HH1HH1HH HXwSHV HHt[HFHf.HHRHtH;J(vHRHuH9t(H;O(r"HCHHw0HW8HHH[H5HH[HWHH!HF H+BH;GSHHLYLQLIH~HLHvHLXLPLHfDHH;PHt;I9t]HHtoHH9uHNHHH;PHHufHPI9LJHRLHLHPHLHu[SH_8H5HH[SH_8H5HH[AVAULjATUIHj SHHGHGI9I1LHI9IuHH9wgHHIIHIMnHtoE HHI9HuI^L[]A\A]A^1LI^[]A\A]A^I>HHtH mbUHSH^LHiLQHyHJLL^H)HHHH H+JHHHH LL)HHH]DIM9t7HtII IM9IuLKIHM9Muf.LGHHMLuHhL[LPHx]HVHHHVHHWtH=uBfBSHHXHHHC8H{HHHHHCtHP HHHH߾@[fDUHSHoHHHG(HHGHHHHtHP HHHCHH@[]@f.HSHHG8HHHHGHHtHP HHHH߾@[UHSHoHHHGHHHHtHP HHHCHH8[]HSHHHHGHHtHP HHHH߾8[UHSHoHHHG(HHGHHHHtHP HHHCH[]f.SHHXHHHC8H{HHHHHCtHP HHH[fHSHHG8HHHHGHHtHP HHH[AUATHUSIHLo0H_(HI9u of.mHI9tLHkHtH=uًEPUuHEHPE PU uHEHHPI9uI\$(HtHI|$ID$H9tHL@[]A\A]HEHPE f.AUATUSHHHxHLo0H_(IHI9uhmHI9tLHkHtH=uًEPUuHEHPE PU uHEHHPI9uI\$(HtHI|$ID$H9tHL@[]A\A]HEHPE HGHSHHHH[HGHSHHHH[AUATHUSIHLo0H_(HI9u of.mHI9tLHkHtH=uًEPUuHEHPE PU uHEHHPI9uI\$(HtHI|$IL9t0H[]A\A]HEHPE f.H[]A\A]DAUATUSHHHxHLo0H_(IHI9uhmHI9tLHkHtH=uًEPUuHEHPE PU uHEHHPI9uI\$(HtHI|$IL9t0H[]A\A]HEHPE f.H[]A\A]="" <> ptr_.get() == rhs.ptr_.get() General Read length relative cutoff converted to Read length absolute cutoff bp converted to Length cutoff: Unique edge length: gap_len_[0].gap == 0 is uniformity % variation Constructing connectionsTotal conditions Scaffold graph contains vertices and edgesVisualizing scaffold graph_single.dotPrinting scaffold graph.datascaffold_graph with long reads paths with coverage unique edgesClosing gaps in pathsTail threshold: Count threshold: Length threshold: Connection score threshold: Connection length threshold: PathExtenderGapCloserext factory addedGap closing completedLong reads paths Finalizing pathsPaths deduplicatedOverlaps will not be removedPaths finalizedCreating read cloud extendersTotal number of extenders is Traversing tandem repeatsTraversed loopsthere are misassemblies in path: wrong gaps in path. 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startAWAVAUATUSHdH%(HD$x1HG@H9G IH5HLH LH5HH5L1HC H9C@t HHLH5HH5LfLZ(H5HH5ALH5LHCXH+C8HHHHHC@H+CHHHHS0H+S HHHC 1Ld$0HD$ HD$PHD$HHD$(HC H9C@HHLLHD$HT$0HD$H+HLH5HHD$H|$PHH9tHSXH+S8HHC@H+CHHHHHHHHC0H+C HHH9HLH5HIHt$ HLLkHD$0H|$LHHHHT$XHt$PLH5HIHt$(HLHD$0H5xHD0@ |$LL$D$DLH5HIt$LH5HIt$LH5 HIt$LH5HILkxLHLHD$0LH0H5HIHC H9C@tdHHLLHD$HT$0HD$H;1HD$xdH3%(u'HĈ[]A\A]A^A_fD1@1oHT$H|$PHHH9tHATUISHHHHdH%(H$1HsLHsHHH$dH3%(Hu HĐ[]A\HHHContigWriterScaffold originates from path seq_.size() == qual_.size()>basic_string::substr/srv/scratch/marinovg/spades-cloudspades-paper/assembler/src/common/assembly_graph/paths/bidirectional_path_io/bidirectional_path_output.hpp/srv/scratch/marinovg/spades-cloudspades-paper/assembler/src/common/io/reads/single_read.hpp%s: __pos (which is %zu) > this->size() (which is %zu)AWAV0AUATUSHHL$pdH%(H$x1LH$pHHD$(HCL+I9HD$L|$PHD$0L$IoHD$H8HHtH1ID$LH$Iu(IU0HID$0I|$ H$IuIUHH$ID$PI|$@!H$ H$(H9$DŽ$@tH$(H9$HH$H= 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D@fDLt$`LI~H5M<$Ld$@IvLLL$@LHLH|$@IL9tLHHHH|$HtHHMHtLHHtH{H|$8HtHHH|$(HtHHHLHH|$@IHL9tH|$@IHL9tL7HH|$@IHL9tLHAUHATUSILg0HHHI9tY1HHHH;HtHP(H{HHtHP(IIHHCH)HH9wHItLI}(HtHL[]A\A]AUHATUSIHHHHtIHtII;HMe0IEt\1fDHHHH;HtHP(H{HHtHP(IIHHCH)HH9wHItLI}(HtH[]A\A]H[]A\A]AUHATUSIHHHHtIHtII;HMe0IEt\1fDHHHH;HtHP(H{HHtHP(IIHHCH)HH9wHItLI}(HtHL[]A\A]HGHUSHoHHH DH@HtHP H9 rHPvHHHuH1[]HpHu-DHHvHtH~ H; rHvHufDHtHr H; w6HHRHuH9t1HHH9uHH[]DHR1Ht3ATIUSHHsLHkHHHu[]A\@HtCATIUSHHsLHs@HkH{0HHHu[]A\HSHHHHtHHtHHHH{pH{XHtH߾[HSHHHHtHHtHHHH{pH{XHt [fD[HSHHHHtHHtHHHH{pH{XHt [fD[HSHHHHtHHtHHHH{pH{XHtH߾[Ht3ATIUSHHsLHkHHHu[]A\@ScaffoldingUniqueEdgeStoragestorage created, empty/srv/scratch/marinovg/spades-cloudspades-paper/assembler/src/common/assembly_graph/graph_support/scaff_supplementary.hppAUATUSHHGHGdH%(H$1HGHG(HG0HGHG H8HHtHu-H$dH3%(Hĸ[]A\A]Ld$ LI|$H5LmIt$HHL $LHLH<$HH9tLYHLHsHHH<$HIH9tLHAWAVAUATUSHHHLL9MexHL=L)HHHH!HHHH)IDHD$IEHH@ H9ulI] 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H9t5HLfDHtoHHH9uHH)HM|HtLeL}LuH[]A\A]A^A_f.HIHH9HuAE1E1 ATUHSHH0H~dH%(HD$(1Ld$HHs H$HHT$HHLAHs HLHPHt$H;t$ tTHtfo$HHt$H{LHP H|$HtHL$(dH3 %(HuH0[]A\fDHLHHHH|$HHtATUSHoHH9t&IDH;HCH9tH@H9uI$HtH[]A\f[]A\USHHHHu H1[]ÐHHHH[]SHHH0H4$HHT$dH%(HD$(1HH#$Ht$HHPH@HT$HD$HD$(dH3%(uH0[AWAVIAUATIUSHHLgHLI)H)HHlH4IH9pLHT$H HLcJ(HT$LmH$ItHHIHBHBIFI9MHHHt%H0HBH2HpH@HrHHHI9uLqLL)M9Ll taLLHtH0HH2HpH@HrHHL9uILL)HL9Mlt#LqIHyHtM9LuL#MtLH$H+LkHCH[]A\A]A^A_HIHH9}HuAH$1M9wHGH;Gt6Ht%HH@HHVHFHPHHHGHHAWAVIAUATIUSHHHHGHm۶m۶mH)I)HHHH<IH9-LHT$H4$H}H4$HX8HT$IIHMt]HBMFHDJIFENLJMNLJ MN L@HB(HBHB(IF(HBHBHB HB0IF0H9HAHH8H)Hm۶m۶ LHHHH!HH H)MYfDHSDKLHLKLHLK HJHP HS(H@H@H@H@ HP(HS0HS8H8L9tfH HHHJHJ HL9uH HHHJHJ HL9uAWAVIAUATUSHHHGHHw(H_II)IIK 'H< H9vEH)HHJ HEH]HHIH)H9H9HL9LHCLlHI9J<T$ H $LH $T$ IHu(H)HHJHEHEHLHPH9t H)HH}ILuLmHH](HEHHE JD#HEHHHE8HHE@H[]A\A]A^A_DH9tLH)Hdeque::_M_new_elements_at_backAUATUSHHHHHE0H+E8HH+U(HHHHHHHE H+EHHHH)H9rbH+}LfHEIIT$HH)H9v 1LHMt$HEHL,HIEI9sH[]A\A]H=HAI9tHEHJ posresult pos last_edge_pos > -1(int) path.Size() == last_edge_posAWAVAUATIUSHHdH%(H$1D$ H8HtHH|$ {HCXH+C8HHHHHC@H+CHHHHS0H+S HlkHcL{xE1Lt$H$fDI@H$LLL)HT$I$H9rH8IHtH9l$  HCXH+C8DmLc@L+cHHHIHJ Lc0L+c IIDAA9|KfDHAE9uHCXH+C8HHHHHC@H+CHHHHS0H+S H9 H8HHtHuVH$dH3 %(D$ H[]A\A]A^A_ÐH H5H=@Ll$PLI}H5 t$ I}Lt$0IuHLLL$0LHHH|$0IL9tLHSXH+S8HC@H+CHHHHHHHHC0H+C HH9H H5H=fDH H5H=@Ll$PLI}H5t$ I}Lt$0IuHmLLL$0LHHH|$0IL9tLvf.Ll$PLI}H5I}Lt$0IuM$$LLL$0LHLH|$0IL9tLHLHH|$0IHL9ti != -1/srv/scratch/marinovg/spades-cloudspades-paper/assembler/src/common/modules/path_extend/loop_traverser.hppComponent edge is not found in the pathAWAVAUATUSHHdH%(H$81HFXH+F8HT$ HL$(H|$LD$DL$ HHHHHF@H+FHHHHV0H+V HLHD$ LcHLv M1L$`H$AHALLLH)H$`HD$(H9GuH4$tLEXHu@IcH}HLH+E8HHHHHH)HHHU0H+U HHDH9i|$ HQHLH|$HT$LLH$8dH3 %(XHH[]A\A]A^A_H$HH{H5H{H5H{H5H{H5H{H5 H{H5jH{H5 H{YH5 HHH5'HH5HH$HsHH$H$H=HH$HEH9tHsHH$H$H=HH$HH9tH=H=H H5H=YLl$0HLLLHT$H|$LLL@|$ tqH9HVHH!H#HPHD$HpH@Ht.HfHH@HtH9P(sH@HuH9u`1^fH9tqHH#FHPHD$HpH@Ht3HfHH@HtH9P(sH@HuH9t H9Q(\$ IpH"IpHHLHH$HIH9tHLIpath.GapAt(0) == Gap()AWAVAUATUSHHXdH%(HD$H1HFXH+F8HHHHHF@H+FHHHHV0H+V HHu(HD$HdH3%(HX[]A\A]A^A_DLHl$ 1IIHLHD$ P P N1LHHD$ P P H 91Mw 1HLHD$ HLHPH0IWXI+W8IG@I+GHHHHHHHIG0I+G HHH HD$HD$fDHLHHD$ H0HP@ t$LL$T$HHD$HD$ HL$LHPH0IWXI+W8IG@I+GHHHHHHHIG0I+G HHH9gZfx H H5H=LoopDetectingPathExtenderAdding edge. PathId: path length: , fixed gap : , trash length: -AWAVIAUATMUSHHHLdH%(H$1IE0Hx(HHHpHHH HH@HtH9X(sH@HuH9tJH9Z(wDIEI}Ht7HHH@HtH9X(sH@HuH9t H9Z(L4$H\$HHHIHtH9Y(sHIHuH9t@H9X(w:HLHH#$Ht$LHP@H@8HT$HD$fHLLHH8IHtHu@H$dH34%(tH[]A\A]A^A_1@Lt$@LI~H5H I~H5HIHE H9E@HHpLH5HHA4$HH5HHAt$HH5HHAt$HHl$ IvMeHLL$ LHLH|$ HH9tLH$H\$BHH|$ HHH9tLHHloop detecorpushAWAVAUATUSHdH%(H$1HAH+Ht/1H$dH3 %(H[]A\A]A^A_@IHHH8IHtHA$u5HE@H9EH%HPHpHtqI$Hx_H8IHtHHCIHLHPHH@HD$D$ $fHCHHpHPsfLt$0LI~H5M}Ll$IvLLL$LHLH|$IL9tL@HEXH@HDLt$0LI~H5M}Ll$IvLLL$LHLH|$IL9tLH|$IHL9tLHHAWAVHAUATUSHXH4$T$dH4%(Ht$H1H9H_IH9HD$Ll$0Ld$/HD$HH)HD$H|$HLHthHD$H{HsHHHH~HؐHHHHHHHHHuI>IvH;$uHD$HdH3%(urHX[]A\A]A^A_D$L{oC)D$0D$/IIIG IGIG(LLLIouHD$0HEHD$8HExHH)HHHHHHH%f.H;Gt*H;G t4H;G0t>H@H9tEH9uLBL9GuHfLJL9OuHGÐLRL9W(uHG ÐLZL9_8uHG0ÐHH)HHt$Ht,HtHH H9uHBH9GuH H9tHH H9tHLZL9_HuLRL9WHuBidirectionalPathRemoving empty pathspred(*pp.second)Empty paths removed/srv/scratch/marinovg/spades-cloudspades-paper/assembler/src/common/assembly_graph/paths/bidirectional_path_container.hppAVAUIATUHSHdH%(H$1H8HtHH?I]MeL9uDHI9trH}H3HPtH}HsHPhH}HsHPgH;HtHP(H{HHtHP(HCHI9uMeI]H$HD$HHHLjH9ZYHPH9tIHPHsfHH HHHHH9t!HJH; $uH|$H9:uHH9u@H9tGIUHH)H9t1HHH~%HDH3HHHrHsHrHuHIEH8HHtHu7H$dH3%(oH[]A\A]A^fDLd$0LI|$H5H+H\$It$HLL$LHHH|$HH9tLLLd$0LI|$H5L3H\$It$HLL$LHLH|$HH9tLDLH H5H=H|$HHH9tLHHSH H dH%(HD$1HHH5HHH HHHPHpHHHHD$H$H|$HtHD$dH3%(uH [H|$HHtHAWAVIAUAT(USHHIHIHC HsIEIEImIE HAEHkHtKM(HHE HC EHCHCI\$LcHuHu"HmIHuHL[]A\A]A^A_@LHLHC@LLLIEgHLLHHUSH@HdH%(HD$1HuHHHEHSCHC HC8HHS(HS0HCtSH{HH<$H f.HHQHuHK(HHHQHuHU0HK0HC HS8Ht$dH34%(HuH[]HHHHAUATE1USHHH?HnHt.H}HCIH@1HKHsHH HmHuH[]A\A]@L HmIHtH}I$HH@1HsHHH8uHHtHt$Ht$IL+VHC0Lk0HHMtH;H0H9tHHAWAVAUATUSHHL$MtnI$IIIHLC HHtPL@ 1IHLHuI9u8M9uHCI9GuHsLtHL[]A\A]A^A_E1HHN1HHwIHLHtHHt H1HHHN1HHwIHLHtHHt H1HError erasing path from coverage map/srv/scratch/marinovg/spades-cloudspades-paper/assembler/src/common/modules/path_extend/pe_utils.hppATUHSHHt$Ht$HT$dH%(H$1HL$HHXHt$HHHCHsH!HT$HH  HH@HtHP H9 sH@HuH9tHG H; HBHHk(H$dH3%(H[]A\DH8HHtHtHl$@HH}H5L#H\$ HuHLL$ LH>LH|$ HH9tH8HH|$ HIH9tHLIHATUHSHHILU0IHMHEHtYE1LMHHHHHHtHIpHT$ IZAWAVIAUATIUSHdH%(H$1Ht$0HH;HtL&HIIGXI+G8HHHHIG@I+GHHHIW0I+W HHIG Ll$`Mt$1HD$IHD$HD$@HD$(HD$PHD$HD$8HD$ I$Ht$HLHhHD$`L0HP@ t$@Ht$T$HHډL$DD$LHD$`H0HPHH9Ht$PHt$LHT$XL|$8HvHl$X1LHHIt$H$HT$H4$HHHHBH8HWHHD$8H HBHtHHB H; rHBHuHL$ 1IWXI+W8HIG@I+GHHHHHHHIG0I+G HHH9H$dH3%(HĘ[]A\A]A^A_fD(foD$PHH4$LH@H@HHH8HWHHW0fDLD$(LL$fD0foD$PHPHD$pH@)D$hH@HPLLHP H@(jXZ5HT$0HAVAUIATUIS0IH0dH%(HD$(1LHH0Iu`HHHLHLHHH;Hk`H]`H,$HtH.HHHH;H\$HtHHHIt$I;t$H\$Hl$tVHt foD$HIt$HL$(dH3 %(HujH0[]A\A]A^LH'HT$L벐HHD@HT$HVHH0HHH߾0HAWAVIAUAT0USHHIHIHC ID$ HC(HID$(tH=@HsID$ID$Il$HA$HkHtfM0HHE HC HE(HHC(tH=tN@EHCHCI]LkHuHu3HmIHuHL[]A\A]A^A_D@f.LHLHC@@fDLLLID$*HLLHHHATUHSHHILU0IHMHEHtYE1LMHHHHHHtH$HHI9HHHt%H0HAH1HpH@HqHHHI9uHLH)HH|HHfDFHHI9t3HtH0H1HpHHqtH=uHFHI9uHI)INd?M~M9tLLL@HtHHH HHH@HJHHI9uIuLH)HMdM.M9t fDI}HtIM9uM.MtLI.MfI^H[]A\A]A^A_fDH:I9+HfDAHHI9t3HtHH HHHHJtH=uHAHI9uIFL)HL9H 0INtBHLDHt%HH@HHVHFHPHHHH9uHHIN6CH}Ht L$L$H]IHII\$H}I$H9HEtHtH=uC@H=@H!H11)H=HHNHHwjHH1Ht(u/HHHtWu HHf.HSHH(HKH9HcC t&HS(HrHH3HoC[Hs(9HvuHH3[SHHHH(HWH9t1H;Ht'H$HT$HCD$C HC(H@HHHHC[DHH@DP1D9t\ 2LKAAAAIcHHL9Ls1B4HcAHHL9L0rfAD9uց?8u%HcH{PH@8u?DPA9tHCS HHHC[EAf.ASD6HHCS /srv/scratch/marinovg/spades-cloudspades-paper/assembler/ext/include/btree/safe_btree.hgeneration_ > 0HH?~HcPHHHHHH H5H=}AWAVIAUATIUSH^ IHHdH%(HD$x1H|$@HHD$XHD$@HD$PHt$HHT$`H\$hID$ HtH@H|$HHD$(HT$H\$8IHD$HD$ D$0HLxHH5HHCHHHC ǃHǃHCHD$HC(HD$HC0HD$ HC8HD$(HC@D$0CHHD$8HCPHD$@HCXHD$HHC`HD$PHChHD$XHCpD$`CxHD$hHHHHHǃ(H$HH LxL`Lp @HHPHHHHT$H=H5LxILxH0L`HI^(In8IFH$IF CHHEIF0EKHMHHIH5HI H9HM}MuHHT$xdH3%(LuoHĈ[]A\A]A^A_ÐHsHMH=L`HxH$I^(IF HUIn8IV0W@H5LIfHIHLIHGAHvH?LIM~+LHH D:~3HHH D8|1HHu1I9t@87f.HLf.H)HyLHAWH)AVAUATIUSHHHHL$~FILt$fL)LeHH~*ILLILHLHuLHHL[]A\A]A^A_AWH)AVAUATIUSHHHHL$~FILt$fL)LeHH~*ILLILHLHtLHHL[]A\A]A^A_USHH_HtaHL DHCAHtHHC H L9wHCE1HuEIu1HI9HGIGH[]H_1H9_HtHHHUIHL HP H AUHGATUSHIHH9HHL HF L9 vIHGH9Ht.HHH@ L9 HzHEHEH[]A\A]@s~HO 1H9HtHHH@ L; s:H{HEHD@H(tH_ HHC H H9 w.HLH[]A\A]fHH1[]A\A]HH1[]A\A]AWAVIAUATIUSHdH%(H$1HFHH?HHH9L|$ Lt$`Io$H$IOIVo$o$_f@JL)@IoIoC@oC @ H{0Hx0H}HH?HHI9HHH$L$`H)I\$pHC0$oHD$PfH~fH~D$ H9oCD$0oC D$@AH|$pHD$0H9~H9@&fHo$H)H$Ho$o$fDHp0XP H$dH3%(HĨ[]A\A]A^A_HHLD$HL$HT$HT$HL$LD$tCH$HD$@H9tqH9@o$H$o$o$FfH|$pHD$0o$H$o$o$fDHIwI~HT$HL$LD$LD$HL$HT$tHD$PH9$QH$HD$@<USHH_HtQLFHCAHtHHK(L9wHCE1HuEIu1HI9HGIGH[]fH_1H9_HtHHILEHH(HAUHGATUSHIHH9tLjL9n(Hv:HGH9Ht#HL9h(HsjHxHEHEH[]A\A]sfHO 1H9HtHL;h(Hs,H{HEHDH(tH_ HC(H9Bw3HLH[]A\A]fDHH1[]A\A]HH1[]A\A]HHWLGdH%(HD$1Ht_HNLfDHHRHtH9J(sHRHuI9tH;H(sH4$HHH0Ht$dH34%(u HfLAWAVIAUATIUSHdH%(H$1HBHH?HHH9LT$PL$H$IL\$XHt$HD$ILT$0LL$8OfDJIDIDL)oIH9IoC@oC @ Hs0Hp0IEL$HL)Il$MH4AoH)IB0IfH~D$PH$H{0AoBH$D$`AoB D$pofH~$H9oC$oC $H$HD$`H9H9fDLD$LuHHH?HHH9tuHL$OHL$H$HH$H$HL$H$H$HH@H$dH3%(4H[]A\A]A^A_HL-HHH)HIH)IooB@oB @ HR0HP0?@H|$LHL$(LT$ L\$L\$LT$ HL$(tqH$HD$pH9HD$0L\$(HL$ LT$HpHD$8HxLT$HL$ L\$(tBH$H9$}f.H$HD$`UfDH`H$HD$p5AUHGATUSHIHH9tL*L;n Hs;HGH9Ht#HL;h HvjHxHEHEH[]A\A]ÐvfHO 1H9HtHL;h Hs+H{HEHDH(t H_ HH9C r4HLH[]A\A]HH1[]A\A]HH1[]A\A]H9t[AVLwAUIATIUSHfDHk LLHHtHHLHI9Hu[]A\A]A^fpp.first->Size() == pp.second->Size()UHAWAVAUATSHHG8H@dH%(H]1HXHHIH)HHHsHH9L9H$ HLLHtoHHH9uHHHH)HHDH9HHHHHxHH0HLpL IFXI+F8I^0I+^ LHHHHHIF@I+FHHHIT$XI+T$8HID$@I+D$HHHHHHHID$0I+D$ HHH9txI\$XI+\$8ID$@I+D$HIV@I+VHHHHHHHID$0I+D$ HHIFXI+F8HHHHIV0I+V HHH9DH`H@1DžhHDžpHPHHDžHxHHOHLHMIM"I8HHwI*HHHp1IHHHI9I9uM(MIE(IL9HHLxHLPH+G LLHHtLHLHI9HuH@1LHKHHL IMtMI9Hw#@HHt8Hp1IHHHL9u!I9uIHtHp(HPHPHPHxE1HHXH9HXHX HHKIT$XI+T$8ID$@I+D$HHHHHHHID$0I+D$ HHH90H@Lp@wL9sL9IT$XI+T$8ID$@I+D$HHHHHHHID$0I+D$ HHH9H=ID$1HDžHDžHH0HHDžHDžHDžHDžHDžHDžHDžHDžHx1HDžHDžHDžHDžHDžH{hHDžHDž HDž(HDž0HDž8HDž@H1HDžHHDžPHDžXHDž`HDžhHDžpHDžxHEHEHEHEHEHEHL9 HEMLLL@HHUHHIL$8HHH)HHH0HPLHxHHH9I9 I$HI+$HHHHH~fI$HHH)HHo)@IL$ HI+D$(HHH4HHH3DHH6HH@HH`1Hs8HKXIHS@H+SHH{ H)HHHHHH HS0H)HHL92HHHH;HX`HC`l HtHHHHHH;HH HtHHHHHHHHHpH;p Ht foHHHHpH}HHHtHHHt;HEHXHpH9v"@H8ILHH9wHHHxHxhH0LHXHHXHPHH9pID$`MIt1ېLHL9uHpHPHHH9]Ht HHEdH3%( He[A\A]A^A_]HHHH@0H@8HHHxHH0HHHHHLHH;HH HtL6HHHHE1Hq8HAXHy H)HHHHHA@H+AHHI0HHHH H)HHHWHH8HHpHH`H H(ILHHHHH+HHLHHHHIIL)HHHыHDP@ HDHH+A(HLHTHHHHH)HHL;H0HPHHMnHpHLHHH1LHHhIvHHpHHHHHBH8HWHHH HH HBHtHHB H; rHBHuHH`1LIICXIs8IS@I+SHI{ HH)HHHHHH IC0HHH)HHL9HH;HLHHtL6HHHs8HCXH H{ E1HH)HHHHHC@H+CHHHHS0H)HH HH8HHpHH`H@H(fDIHLHHH+HLHHHHIIL)HHDHP@ DHH+C(HLHtHHHHH)HHL;H0HPHMnHpHHLHH1LHHhIvHHpHHbHHHBRH8HWHHH HHHBHHHB H; rHBDLHHL;H0HP L8HLADLHHpLHHL;H0HPL8HLAfLHHI(foHHhHL@HH@HH8HWHHW>D(foHHhHL@HH@HH8HWHlHWDHHHYHHHHHHHHH0HPHH(@H@LHPHP H@(jfoH0) Y^0HPHH(@H@LHPHP H@(jfoHP)@XZHxH3H HeHHHHs LHH=H=H$IIL9tH$HH9tLHT$ H$HH9tHT$8H$HH9tHT$(H$ HH9tHT$H$@HH92(ILkfHLksHLkHLkHLkH$IIL9tH$HH9tLHD$ H$HH9tHD$8H$HH9tHD$(H$ HH9tHD$H$@HH9&SILkkHLkxHLkHLkHLkAWAVIAUATIUSHHHOHHI)H)HHH4IH9LH$H]HMMH$III)MtHII9t LHLHL$L$HL$L$IODM)L9tLLLIMHtHLmLuL}H[]A\A]A^A_L<FfDHH9-HuME1E1>HGH;GtHtHHHHGfHHAWAVAUATUSHHL$MtnI$IIIHLCx HHtPL@x1IHLHuI9u8M9uHCI9GuHsLtHL[]A\A]A^A_E1_Map_base::atHHN1HHwIHLHtHHt HHH=HHHH@@HSHHHHp H@(HtBHHf.HH@HtH9P sH@HuH9tH;Q [1[HHN1HHwIHLHtHHt H1HAWAVAUATIUSHHdH%(H$1HH#Lt$PL|$ LHP@H@8HD$PHGHT$XHxI|$HHHHu@IWHD$(HD$0HT$8HT$@HHD$HtTLLL|$PHHHQHuHL$8H f.HHQHuHUXHL$@HD$0HT$HIVHD$`D$XHD$xHT$hHT$pHs@HHL$LLt$H$HHHBHuHT$hH$ fHHBHuHCXH<$HT$pHD$xH|$`HEXH8HD$HEH9tcLc@E1H8@Mt=HH HLHHRHtH9J sHRHuH9t H;N rIHH9uL)l$H4$LHt$0LH$dH3%(HD$u$HĘ[]A\A]A^A_ÐHCXH$2Ht$0HLHAUATUSHHH(dH%(HD$1HH#HHP@H@8H$HGHT$HxH}IHI8HI|$L9t~Hh@HX8E1fDHt=HO HHHHRHtH9J sHRHuH9t H;N rIL9HuH\$dH3%(LuH([]A\A]E1/srv/scratch/marinovg/spades-cloudspades-paper/assembler/src/common/barcode_index/barcode_info_extractor.hppget_first_key() == get_second_key()AWAVAUATUSHHHH4$HL$ dH %(HL$x1H@HH5H|$HT$HGHGH91HAHHxHD$H@@HH $H5HH@H9lHAHt$ HxHD$H@@H $HHIHL$HyL|$LL4$HX8Ht$ IFHxHD$Hh8IH5H@H9IFLHxHD$H@@HIIHD$PHD$(L<$Ht$IGHxH$Lp8IGHt$ L<$HxHD$H $Lx8HHH@H9PHAHt$HxHD$H@@H7I9LLHE H9C tHE H9C HS(HD$PHT$XHU(HT$`HT$HrH;rHtHHD$HHpL9kLs L} M9M9I9tZM9w dM9sHL9HLp uM9w@HLx HM9s,L9uLLs L} f.L9tM9LrM9vL9IDL9u LeHHHMH $H5HH@H9HAHt$ HxHD$H@@HLLHD$I9HT$vI9mI9dL9[Ht$xdH34%(HD$6HĈ[]A\A]A^A_L9H4Ls L} M9HMHLx yL9uHHLp `Ht$H<$HT$(H|$Ht$ H<$ H4$H HH@H9xHFHt$ HxHD$H@@HHHIIf.L|$LL4$HXHLL|$IFHxL`8IFL|$ HxLHD$HhHIFLHxHD$Hx8LIHD$`IFHt$H\$PHl$XLl$hHxHD$H@HLHX IFHxHD$H@HH;X tOH|$0Ht$PH\$0Hl$8Ld$@Ll$HH$H@HD$HxAHt$H<$H\$PHl$XLd$`Ll$hHt$ H<$H H5H=Ht$H<$)Ht$ H<$HHD$H8HtHAWAVIAUATIUSHH5H8dH%(HD$(1HH@H9rHGHHxH@@Hfu%HD$(dH3%(H8[]A\A]A^A_fIHD$H@ H9fHH#Ht$HP@H@8HD$IGHT$HxIIGLI8HxI}D$I9tiL`@HX81fMt=HO HLHHRHtH9J sHRHuH9t H;N rHI9HuHxffH*IHD$H@H9u}ILHH@@D$HxCfH*^fHHfHH H*XHfHH H*XLLD$LHLHxfH*HHHHH^HyHYH~H^HyI9uIMHIHMI)LIM)M9HLHHLII)M~JIrH1f.HHHHHH^HQHYHVH^HQL9uHI)HIHI{L[@H@LOHHL)HIHLHHHLALFHFHALAHFL9uHHHHAWAVAUATUSH8HDL$/MLHHT$H)IIHH9L$/IHt$I?IIML|$IN<LL$ LLL$ 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Proceeding to the next queue entry.Finished dijkstra run from vertex Dijkstra iteration startedVertex with distance fetched from queueDistance to vertex is found to be at distance from vertex UHAWAVAUATISHH(HdH%(HE1H8HtH1I HHspHCPHDž HDž(HDž0HHC`LHHHChHHCpHǃHHCxHHHHHHHǃHǃHHHHHHH(H;0HǃHǃHHHHCHHDž@HDž`HDžpHHHHPHHXHh Ht.fo@foPFfo`F HpHF0H8H(oFHHH 1)oF)oF)HFH)HHHm۶m۶mHHHHH@HH@H@HHPH8IHtH1O L@IGHH HH(H9 {HH8IHtH1H HHHLo(oGLg0)HHGLw HHHH HHRHtH9J(sHRHuH9HtH;H(s+HHHHHH HLp8Lh@L`HHp0H(HHPH)H8 H(H8IHtH1 HCpHHtJHHDHH@HtH;P(vH@HuH;Ht H;Q(HHHfoH)IH8HtH1HCPHH;C@HCPoCXH8IHH1LHH5LIwM$$LL LH1LH8IHHD$@H$1L$HH@H@HD$ HPHH9IfHHL9uHH9L$LHHD$@L$IL`H(HD$ L`HfDHP HHHUL9uH\$@H|$ LHkH$dH3 %(Hu=H[]A\A]A^A_f1qE1HD$@1HH@H$LHH|$ H$HHHD$@H8HtHPathDeduplicatorChecking if path redundant Considering candidate Clearing path AWAVAUATUSHdH%(H$1HHH@H9HD$HTH$@IHT$(HD$0H$PHD$@H$HD$8DHD$(H(H8HHtH1jIFH|$PHHH$H|$XHD$PH9H|$HD$DHD$HH8IHtH1bH99H;]`/HSXH+S8HC@H+CHHHHHHHHC0H+C HHA~H=D$$D$ E1HD$E1L|$p@HHbHHHH)HHHK 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overlapsAWAVAUATAUSHAHdH%(H$1@tH8HHtHHEL0HXI9tmDI6HFXH+F8HV0H+V HHHHHHF@H+FHHHHt%M~1ɺH1ɺLHIL9uEH$dH3%(wHĸ[]A\A]A^A_fDH H5H=@Lt$ LI~H5L;IvHHL $LHLH<$HH9tLfH8HHtHuA1HLt$ LI~H5L#IvHHL $LHLH<$HH9tLnH<$HHH9tLHHPEResolverRemoving overlapsSorting pathsMarking overlapsSplitting pathsDeduplicating pathsOverlaps removedAWAVIAUATUSHHdH%(H$1HT$HL$LD$DL$,D$0H8HtHIDED$ u8H8IHtHYHuH}1IL$H$HDŽ$HDŽ$HDŽ$DŽ$ ?H$HD$HDŽ$(HDŽ$0H$HD$H$HD$HH$D$+D$+$IE`H$H8IHtHXT$ t$,LH8IHtHH$L$HT$8fo$ Iu0LHDŽ$HDŽ$H$H$)$HDŽ$Ld$8H$HD$LH$H$H8IHtHDIH|$@Hl$@D$HHD$PHD$HD$XHD$HD$`HD$HD$hD$+D$pHH8HHtHuDLI}0H$dH3%(tH[]A\A]A^A_f.H$`HH{H5L$@HsHmLL$@LH;HH$@IGH9tH4H$`HH{H5IL$@HsLHD$ L$@H|$ LH9H$@IGH9tH.fH$`HH{H5L$@HsM$$LL$@LH4LH$@IGH9tHH$`HH{H5L$@HsM$$LL$@LH1LH$@IGH9tH H$`HH{H5M/L$@HsLL$@LH'LH$@IGH9tHxfH$`HH{H5L$@HsM$$LL$@LH*LH$@IGH9tHH$@HIGH9tHHHH$@HIGH9tHI}0HHHLH$@IWHH9tHH$@HIGH9uHHAUATIUSIy7LHHdH%(HD$81HF HpHH1Ao$IuIEHID$ HiIU)D$HD$0AoD$)D$ HpH|$HHHH4IH$EIHT$D@EHEHMM1HpID9tTdtOIt(LHHHL1H1IH1HH1L:HH@LH&HFIIJHsD9[HcLHHMHaHLfHHHHV(H 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DHHI<0D:HHuL9tE:|IL9uHH$dH3%(LHĸ[]A\A]A^A_@LHL$pLHHD$PHHL$HL$HL$HDŽ$LLd$PH$HH$LH$HLjH^_H$ILhHLf.H)LGLQLHHD$pHt$0ufDLHHD$0Ht$#fDHHT$H3HHD$HT$H$HXLd$PM@H|$PHHtH|$@vH|$0HtH|$ vH|$HtHH|$pHHuHHATL%USHHL#H}HHCHH{tHPHE HC HE(HC(E0C0HHH(HC[]A\HHL#HUSH@HHHHHHC8HHH5HHH8HCH8HC8HHHUSHHHxH@HHHHHC8HHH5HHH8HCH8HC8HHHAUATIUS@HHHdH%(HD$81LHHHHHHD$HD$ L%H$H(HD$(HD$HD$0HC8H|$HL#HCHH{tHPHD$ HuH{HC HD$(HC(D$0C0HHH8HCH8HC8HHH5HIL#HMHHLHIAWAVAUATUSHHHHdH%(H$1H$L|$`HHD$(HLLd$@HD$8HL$`Ml$HD$LHIQHH$H$HL$`H9u H9MH$H$H$HL$M$5$'L$H$L)HuH$H$H)H9HLl$@H\$8 H{AD$PLH\$HH]H;]HHH|$@tGHCIL$HHD$@H9ZHHD$PHCHD$HI|$H|$@HBHD$HD$PH H]ID$H9tHL$`H$H$HHHH9$Ƅ$L$H$Ll$@L)HH\$8Ht$1LHT$8HD$@HT$PHLHH\$8HD$@fDMt/$tAuIIHtH|$(HHH$dH3%(H[]A\A]A^A_foD$PCH]DHH+EIHHH4H9Ht$OHD$H|$HD$LHD$tGHPIL$HHT$@H9HHT$PHPHT$HD$PHD$HHPID$HD$@HUH9HJ HHBH)HHH| 0HT$:H HHJHHHJH@H@H H H9^HtHJH HHH9uoBHLLD$HL$H$H9$HL$LD$H$H9$HHHu[DH$H9$Ll$@HD$8@HID$Du"HHHtIHL$MHD$ f.H$H9$ZLl$@HD$8"HFHHD$LuLH LL$ L9HK LHCH)HHt0LH4fDH HHJHHHJH@H@H H H9t"HtHJH HHH9uoBHGLuHHD$ H]I9t$fDH;HCH9tH I9uH]HtHLt$HD$ H|$@LuLt$HELucfoD$P@HH9|$H|$HD$HHD$HD$ HLeLmLI9tH;HCH9tH LeH|$@IHL9tHHHD$`HtuHHHtIHH$Ht$uHHHtH|$(HHHHUHAWAVAUATLSIHLHL&dH%(HE1HFHLHPAELLLLLLL0LHDžpLLLLHHLLLL1ƅX8HvHHtHvHHtXHHDH@HpvH0HtHvHHtHvHHtHPLeLeLeEL9HEWHpHtKHpHHPLHXHyPHHPHELeH9u&H9u!H;EuEHpHPHXHPLeHUHELHXLHpHt%u!HHHtHXHyHHvHHtHXLHDžpHEHEHEHEEHpHt%u!HHHtHXHyHLLLLHXLHDž`HDžhHDžpH LHHHHHXHHH`jHPXH ZHt%u!HHHtHHHHHpHt%u!HHHtHXHHHHtuHHHtIHHHtuHHHtI}HH`HHPHHhH`HCHSHpHhHCHSHpH0HtuHHHtI~HHHtuHHHtI|$HHMdH3 %(HHe[A\A]A^A_]HpHXDH LHHH 8HHHHXH0HX8HxAvH HtƅXEHHvHHtH@vH0HtHvHHtHvHHtHvHHtHHHHHHHpHtuHHHtHXHHHH0vH HtHHHHX HHHpHt%u!HHHtHXHHHHHHHI|$HHH0HtuHHHtI~HHHHtŨuHHHtI}HHH`HtHHtuHHHtIHHHpHtuHHHtHXHHHH HtuHHHtHHHHH?HHpHHHHHXHHoH1Ht(u/HXHHtWu HXHf.HAWAVAUATUSHHHHuH?IHI)H)HHH IH9LHT$H}HuLx HT$IIMtoAEoBAEH9t?LHHtooBAH H H9uHG HH)HHM|@H9t=HLDHtooBAH H H9uH H)HM| HtLeL}LuH[]A\A]A^A_ÐHIHH9HuA E1E1HGH;Gt&HtooF@H HGHH is mapping is mappedNumber of edges is 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IvLLL$ LHLH|$ IL9tLI$HHHHPH$H}H$HEHD$HHD$HEHD$HD$HEtH<$HtH8HHtHH8IHHLt$@LHuH+uHI~HHLl$ IvI,$LLL$ LHHH|$ IL9tLZf.FfDLt$@LI~H5M}Ll$ IvLLL$ LH}LH|$ IL9tLd@Lt$@LI~H5M}Ll$ IvLLL$ LHzLH|$ IL9tL@Lt$@LI~H5Ll$ IvHLLL$ LHHH|$ IL9tLDHEHHpHPCWHCXH@H HLHH|$ IHL9tPathExtender, forward loop edge , loop starts @ Restored the pathJumped inside the loop, back loop edge AWAVAUATUSHH8H|$H~XdH%(H$(1HL$8HN@HH+E8HvHHT$0LD$ HLL$(H)HHHHHH]0H+] HHHSH9zHAHQLu Ll$`HD$HHD$@HT$@H$HD$PHD$HD$0HD$ LL{LLLHD$`HH@H9D$HHT$PHD$XucH4$H|$tQLcLLLHD$`HH@H9D$8HT$`HD$hu"Ht$LtIrL{LLLLHD$`HH@H9D$HHT$`HD$hHUXH+U8HE@H+EHHHHHHHHE0H+E HHH9H8IHHL$LI|$H5'Ht$8I|$H5HIHt$HLH5HIHLM>L$It$LL$LHLH$IL9tLHHHLLEXHD$`Hu@H}HLH+U8D DpHH)HHHHHHHE0H+E HHH)Ht"E1fHIL9uHu@H}HLEXH9*HFH;D$(HVHD$hHT$`HD$HL$ HHt$ HHH!H#T$@D+a LH@AD+B Dt$dD$hD$lHHT$(D$`Ht$@HT$HHLD$`HD$dD$lH8HHHL$LI|$H5L$It$HLL$LH!HH$IL9tLHH$(dH3%(H8[]A\A]A^A_HOHvHt$@L_HUXH+U8E1HE@H+EHHHHHHHHE0H+E HHH)H^fDHIL9uBf.IpHHt$ L/H$IHL9tLHHAWAVMAUATIUSIHILHdH%(H$1HF@H9FHHpL$ 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(int)path.Size()AWAVAUATUSHHH(dH%(H$1H8HtHIHE@H9EHHPH@Ht$0H{HT$0HD$8HHSHtHPHBHzH|$(H9H$(H$pL$HD$H$HD$ fDH$HX H8IHtH/HSXH+S8HC@H+CHLe@L+eHHHHHIHHC0H+C HHHUXH+U8HHHJ"Le0L+e IIL9HA)?McfAIA&HLHtHSXH+S8HC@H+CHHHHHHHC0H+C HHDD$H8IHtHqDt$IGH{0LSHLC@Hs8HSXLK EHD$NfDHSXHs8LC@LSHH{0LK HH)LHL)HHHH HL)HHAHMXH+M8H)HE@H+EHHHM)L)IHHHHHH HE0H+E HHHNHHJ H9)D9IcHHAHSXH+S8HC@H+CHHHHHHHC0H+C HHE4H8IHHLH|$H5H|$DH|$IwMmL$pLHLH$pH;|$ tLGH8IHHALIH5IDH|$IwM$$L$pLHLH$pH;|$ tLEH<$H9D$(H$E1H$dH3%(D H([]A\A]A^A_ÐH8IHtHtfDLIH5H|$IwM$$L$pLHLH$pH;|$ tLYLd$@IcHHHD$LL1HALD;t$H8H$HtHH8H$HtHSHH8H$HtHHT$LHLLH8IHtHHH8IHtHHUXH+U8HE@H+EHHHHHHHE0H+E HHA9H8IHtHHSXH+S8HC@H+CHHMXH+M8HHHHHHHC0H+C HHHHHHU@H+UHDHH HU0H+U HH9HCXH+C8HS@H+SHHM@H+MHHHHHHHHS0H+S HHHUXH+U8DHHHHHM0H+M HH9H H5H=&fDLCLIH5t$IH|$IwM$$L$pLH LH$pH;|$ tLHEXH@HLH H5H=L$LIH5L$pIwM$$LL4$L$pLHLH$pLHH9tLL$LIH5 IDH$IwHHD$H$pHH$L$pH|$LHH$H$pHH9tLL$LIH5H$pIwM$$HH$L$pLH!LH$H$pHH9tLL$LIH5H$IwHHD$H$pHH$L$pH|$LHH$H$pHH9tLL$LIH5H$IwHHD$H$pHH$L$pH|$LHH$H$pHH9tLL$LIH5HsXH+s8IHC@H+CHHHHHHHC0H+C HHDH$pIwM$$HH$L$pLH%LH$H$pHH9tLQL$LIH5IDH5 HH$HuXH+u8HE@H+EHH<$HHHHHHE0H+E HHH$pIwM$$HH$L$pLH#LH$H$pHH9tLHEXH+E8HU@H+UHHHHHHHU0H+U HHA9H H5H=$H$H$pHHH9tLHHH$H$pHH9uHHHD$H$pHH9uHLHWrong position in IS cycleadd cycleAUATUSHHHNXH+N8dH%(H$1HF@H+FHHHHHHHF0H+F HHH9rVH8HHtHMDH$dH3%(H[]A\A]0HT$H4$HT$H4$HH0HHIHߺHHߺLH8HHtHuHGLd$0LI|$H5L+H\$It$HLL$LH7LH|$HH9tLHLd$0LI|$H5H+H\$It$HLL$LH0HH|$HH9tL;H|$HHH9tLHHHL0HHH0Hdetect cycleChecking IS cycleRemoved IS cycleAWAVAUATUSHHHdH%(H$1H8HtHIH0HHH8IHtH HHAH8IHtHUAtIcHH f.1H$dH3 %(Hĸ[]A\A]A^A_DLl$ LI}H5M4$IuILL $LHLH<$IL9tLLl$ LI}H5M4$IuILL $LHLH<$IL9tL|Ll$ LI}H5M<$IuILL $LHLH<$IL9tL3HLHH<$IHL9tcov map size: in existing loopun ch enabled edge in short loopPrev edge in short loopMaking stepLast edge in the path: Conjugate: Made stepEdge in short loopAWAVIAUATUSHHHdH%(H$1H8HtHIrH}0HtZH8HHtHE1H$dH3 %(D H[]A\A]A^A_fH8IHtHHHHH$HD$uLCXHK@H{HLH+C8HHHHHH)HHHS0H+S HH @t(}NHt}0H8IHtHOH8IHtHH8IHtHHELHHPAH8IHtHH8IHtH@HHLCXHK@H{HLH+C8HHHHHH)HHHS0H+S HHt<@}H9fHQHqH<$@}WHyH8IHHLd$0LI|$H5MuLl$It$LLL$LHLH|$IL9tL @Ld$0LI|$H5HI|$Hp(M}Ll$It$LLL$LHLH|$IL9tL@}H9tHQHqH<$}b@HEHP0fLd$0LI|$H5H1I|$H@0Hx(@M}Ll$It$LLL$LHLH|$IL9tLvDLd$0LI|$H5Ll$It$HLLL$LHHH|$IL9tLLd$0LI|$H5M}Ll$It$LLL$LH LH|$IL9tL3f.Ld$0LI|$H5HC@H;CHJHpI|$M}Ll$It$LLL$LH LH|$IL9tLLd$0LI|$H5M}Ll$It$LLL$LHLH|$IL9tLfLd$0LI|$H5 HCXH+C8I|$Hs@H+sHHHHHH0Hs0H+s HHM}Ll$It$LLL$LHLH|$IL9tLH@HtLCXH{HHK@H8IHtH{HHHA@IHH|HCXH@HDLd$0LI|$H5 HS@H;SHt~HH#BI|$Hp@M}Ll$It$LLL$LHLH|$IL9tL:HCXHPHn@HHK@H{HLCXH8IHHLd$0LI|$H5MuLl$It$LLL$LHLH|$IL9tL-H8IHHLd$0LI|$H5MuLl$It$LLL$LHLPIHHLd$0LI|$H5MuLl$It$LLL$LHLHLHH|$IHL9tLoopTraverserstart end Str , endEstimating gap sizeFailed to find closing pathtraversconjTraverseLoop STRANGE SITUATION: start Ambiguous situation in path joining, quittingSome path goes outside of the componentClosing path is outside the componentAWAVMAUATUSHH|$(Ht$8dH%(H$1HT$0HL$LL$HH8HtHHHD$(H$HXHD$8H$HD$0H{H$HHSHtHPHZL$LbDŽ$HDŽ$InHDŽ$I9H$H$t?f.Lk HLLHtLHLHI9HuHD$(Ht$pL|$xHXHD$H{HD$pHHHtHXLcH[H$H$DŽ$HDŽ$H$H$I9HD$HDŽ$t<Lk H|$HLHtH|$LHHI9HuL$IFI9H$L$HD$H$HD$@I] HD$L$HDŽ$ HDŽ$(HDŽ$0H$HCXH+C8HDŽ$HHHHHC@H+CHHHHS0H+S HHH$ Hk 1HD$ VH$HKXH+K8HHC@H+CHH$HHHHHH HC0H+C HHH9vqLHH$H$H9GuHt$tH$(H;$0HH$t HH$HH$(KH$ H$(HtHH9u~LIIFI9fH$HbH$HQHAHAH8HHtHE1H$H|$H$LH$dH3<%(D H[]A\A]A^A_H$`HH}H5Ht$0H}H5HILLL#H$@HuHL$@LHgLH$@HH9tH,H8HHHH$`HH}H5&H$H}H5HIH$LL#H$@HuHL$@LHpLH$@HH9tHE1HT$@H|$ H$`HH}H5L#H$@HuHL$@LHuLVH$Lx H$Lh H$HHD$LIWXI+W8IG@I+GHH$PH+$XHHHHHHIG0I+G HHH$hH+$HHHHHH$@H+$0HHH9&H|$LD$HHT$8E1HL$0H|$(LtHVdH %(H$(1Ht$HD$H9OH$HD$8H)HH v(HHHD$HHJ1HHmHL$HL<HL$ IGXMG8MO@MWHIW0M_ HL)LHL)HHHHl5HL)HHHkHm0H}([Ht$@E1Hl$`MILHt$DL)M)L)HIHHHLH4I9 Hq LHHD$`L{LHpIG0L@H@HLHHHRHtH;r(vHRHuI9H;w(IWMWHL@HHRHtH;r(vHRHuI9H;w(IH8HHtHfDH8HHtHHD$H8HD$HhHD$HPHH)HH9Hl$u 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LLH$H$HD$pHDŽ$Lt$xL$LH<$II<$H98|$H|$@H<$|$HcPH|$HRHHB HDHHHHu 1HHHfH5ADD fEDoDA҉AځDIDD)օDIփ,҉)EtLUU(ED+] D)D)9 9|ZXHH9(XiQ(TAXAXD(D(DTE.v,fAU*Vf~,f~ځ%D.G 0AWAVIAUATEUSEHdH%(H$1HHt$ HT$(H|$H8IvLIFIFIF(H\$(IFIF HD$HHD$ LUHD$MLDH1D9 7HcH IH;\v/4HcAH4vH;\9uـ8u&HcHPH@8uDHA9tHcH IH;\sH}LU1MtA:AJI9u9L}t HcHRL| LI7HtHvHD$XHD$LHt$HH\$pHHl$@D$PT$`HD$hD$xLL|$0HL$H$H$T$PLt$H98HcHRHTHD$hLrH!Hh HD$@H@HHHHRH9T$(HD$0HT$8KH|$H!H@ HWH+BH9$YHL$H9tD$PPT$PA9|H|$HHL$HT$PD$xHl$HfDHcH|$pH@HDH0H!Hv@H9wLD$hI!MX@L9XvFH9rA9tT$PA9|HD$xHL$HT$PtH;L$Xu;T$`ufDH$H99$Lt$H$dH3%(IF(H[]A\A]A^A_AЉAx9$jHt$ LHL$HD$0HL$IIHHHE1H*H)fH*H,DMEAf~f~^щցمIΉƉʉށAHA)ɉ)9DGփfɁA*f~f~Ɂ ƉށI‰ށH։)։)9‰GH|$LT$T$II9~fA$XA*f~f~%=.wf~ff~A*%@.cwfEED.QfA*.&:D.fDHfHH H*XMXMM1KL6HFL)LHHD$HH8H H5H=YIvHLDOA8A@tjD9uRI@8AHL;Ht%HH9uopH9HujHȉWHH9tHD9AMcK8HuH8tHGHDLDOHH H5H=H H5H=H H5H=AUATIUSHo HH8DA|$xML$`ID$8IQH9t?HHt1LHD$ HT$(ID$PD$(AD$XID$`H@HID$8MD$0ID$IPH9HHILMD$0HD$HHT$ID$ D$AD$(I@HID$I9L$PRID$H|I;@jILHDP1D9tTD M\$DDLcO IN;\v.D 2DDLcAO 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HtH|$`HH9tyHH5H=1ɺ1HH|$`HHH94*f.LIrDvector::_M_default_appendHtKLGHGL)HH9r?HLHt@@HHuHLHwÐfDAWAVHAUATIUSLHHHH?H)IIL)H9L9LHCLH9HHILMD$I<$IIIHHtBBHHuI9t!LHfHtoHHL9uHtJt5M<$Ml$HLIt$H[]A\A]A^A_@IUE1E1aH=SHHHuHu H[H;HtH߾[HtCLGHGL)HH9r7HLHt @HHuIHGfDAWAVHAUATIUSLHHHH?H)IIL)H9L9LHCLH9HL,LMD$I<$IIIHHt BHHuI9t'LHfHtL L HHL9uHtJt5M<$Ml$IID$H[]A\A]A^A_INE1E1ZH=SHHHuHu H[H;HtH߾[H=HH=HH5Hvoid path_extend::BidirectionalPath::PushBack(const path_extend::BidirectionalPath&, const path_extend::Gap&)typename MapT::mapped_type& utils::get(MapT&, const typename MapT::key_type&) [with MapT = std::map >, std::pair >, restricted::pure_pointer > >, std::less > >, std::allocator >, std::pair >, restricted::pure_pointer > > > > >; typename MapT::mapped_type = std::pair >, restricted::pure_pointer > >; typename MapT::key_type = restricted::pure_pointer >]bool path_extend::LoopTraverser::IsEndInsideComponent(const path_extend::BidirectionalPath&, path_extend::EdgeId, const std::set >, std::less > >, std::allocator > > >&, bool)std::set path_extend::PathSplitter::GatherAllSplits(const PathPair&) conststd::pair path_extend::OverlapFindingHelper::FindOverlap(const path_extend::BidirectionalPath&, const path_extend::BidirectionalPath&, bool) constsize_t path_extend::OverlapRemover::AnalyzeOverlaps(const path_extend::BidirectionalPath&, const path_extend::BidirectionalPath&, bool, bool) constvoid path_extend::OverlapRemover::MarkOverlaps(bool, bool)void path_extend::PathContainer::FilterPaths(const func::TypedPredicate&)std::vector omnigraph::EdgesPositionHandler::GetEdgePositions(omnigraph::EdgesPositionHandler::EdgeId) const [with Graph = debruijn_graph::DeBruijnGraph; omnigraph::EdgesPositionHandler::EdgeId = restricted::pure_pointer >]std::__cxx11::string omnigraph::EdgesPositionHandler::str(omnigraph::EdgesPositionHandler::EdgeId) const [with Graph = debruijn_graph::DeBruijnGraph; std::__cxx11::string = std::__cxx11::basic_string; omnigraph::EdgesPositionHandler::EdgeId = restricted::pure_pointer >]barcode_index::BarcodeIndexInfoExtractor::const_intersection_iterator::reference barcode_index::BarcodeIndexInfoExtractor::const_intersection_iterator::operator*() [with barcode_entry_t = barcode_index::FrameEdgeEntry; barcode_index::BarcodeIndexInfoExtractor::const_intersection_iterator::reference = barcode_index::BarcodeIndexInfoExtractor::IntersectionData]static const Config& config_common::config::get() [with Config = debruijn_graph::config::debruijn_config]int path_extend::InsertSizeLoopDetector::RemoveCycle(path_extend::BidirectionalPath&) constbool path_extend::InsertSizeLoopDetector::InExistingLoop(const path_extend::BidirectionalPath&)size_t Range::size() constpath_extend::BidirectionalPath path_extend::BidirectionalPath::SubPath(size_t, size_t) constvirtual size_t path_extend::CoverageLoopEstimator::EstimateSimpleCycleCount(const path_extend::BidirectionalPath&, path_extend::EdgeId, path_extend::EdgeId) constvirtual size_t path_extend::PairedInfoLoopEstimator::EstimateSimpleCycleCount(const path_extend::BidirectionalPath&, path_extend::EdgeId, path_extend::EdgeId) constvoid path_extend::BidirectionalPath::PushFront(debruijn_graph::EdgeId, path_extend::Gap)void path_extend::BidirectionalPath::PushBack(debruijn_graph::EdgeId, const path_extend::Gap&)const Block& boost::dynamic_bitset::m_highest_block() const [with Block = long unsigned int; Allocator = std::allocator]boost::dynamic_bitset::~dynamic_bitset() [with Block = long unsigned int; Allocator = std::allocator]void btree::btree_iterator::increment_slow() [with Node = const btree::btree_node >, std::less > >, std::allocator > >, 256> >; Reference = const restricted::pure_pointer >&; Pointer = const restricted::pure_pointer >*]btree::safe_btree_iterator::reference btree::safe_btree_iterator::operator*() const [with Tree = const btree::safe_btree >, std::less > >, std::allocator > >, 256> >; Iterator = btree::btree_iterator >, std::less > >, std::allocator > >, 256> >, const restricted::pure_pointer >&, const restricted::pure_pointer >*>; btree::safe_btree_iterator::reference = const restricted::pure_pointer >&]omnigraph::CollectionIterator::Element omnigraph::CollectionIterator::Next() [with Collection = btree::safe_btree_set >, std::less > >, std::allocator > >, 256>; omnigraph::CollectionIterator::Element = restricted::pure_pointer >]Value visualization::printing_parameter_storage::MapParameterStorage::GetValue(ElementId) const [with ElementId = restricted::pure_pointer >; Value = std::__cxx11::basic_string]Value visualization::printing_parameter_storage::MapParameterStorage::GetValue(ElementId) const [with ElementId = restricted::pure_pointer >; Value = std::__cxx11::basic_string]void btree::btree_iterator::increment_slow() [with Node = const btree::btree_node >, omnigraph::de::StrongWeakPtr > >, std::less > >, std::allocator >, omnigraph::de::StrongWeakPtr > > > >, 256> >; Reference = const std::pair >, omnigraph::de::StrongWeakPtr > > >&; Pointer = const std::pair >, omnigraph::de::StrongWeakPtr > > >*]size_t path_extend::PairedInfoLibraryWithIndex::FindJumpEdges(path_extend::EdgeId, std::set > >&, int, int, size_t) const [with Index = const omnigraph::de::PairedIndex&; size_t = long unsigned int; path_extend::EdgeId = restricted::pure_pointer >]void path_extend::PairedInfoLibraryWithIndex::CountDistances(path_extend::EdgeId, path_extend::EdgeId, std::vector&, std::vector&) const [with Index = const omnigraph::de::PairedIndex&; path_extend::EdgeId = restricted::pure_pointer >]double path_extend::PairedInfoLibraryWithIndex::CountPairedInfo(path_extend::EdgeId, path_extend::EdgeId, int, bool) const [with Index = const omnigraph::de::PairedIndex&; path_extend::EdgeId = restricted::pure_pointer >]btree::safe_btree_iterator::pointer btree::safe_btree_iterator::operator->() const [with Tree = const btree::safe_btree >, omnigraph::de::StrongWeakPtr > >, std::less > >, std::allocator >, omnigraph::de::StrongWeakPtr > > > >, 256> >; Iterator = btree::btree_iterator >, omnigraph::de::StrongWeakPtr > >, std::less > >, std::allocator >, omnigraph::de::StrongWeakPtr > > > >, 256> >, const std::pair >, omnigraph::de::StrongWeakPtr > > >&, const std::pair >, omnigraph::de::StrongWeakPtr > > >*>; btree::safe_btree_iterator::pointer = const std::pair >, omnigraph::de::StrongWeakPtr > > >*]btree::safe_btree_iterator::pointer btree::safe_btree_iterator::operator->() const [with Tree = const btree::safe_btree >, omnigraph::de::NoLockingAdapter >, omnigraph::de::StrongWeakPtr > >, std::less > >, std::allocator >, omnigraph::de::StrongWeakPtr > > > >, 256> >, std::less > >, std::allocator >, omnigraph::de::NoLockingAdapter >, omnigraph::de::StrongWeakPtr > >, std::less > >, std::allocator >, omnigraph::de::StrongWeakPtr > > > >, 256> > > >, 256> >; Iterator = btree::btree_iterator >, omnigraph::de::NoLockingAdapter >, omnigraph::de::StrongWeakPtr > >, std::less > >, std::allocator >, omnigraph::de::StrongWeakPtr > > > >, 256> >, std::less > >, std::allocator >, omnigraph::de::NoLockingAdapter >, omnigraph::de::StrongWeakPtr > >, std::less > >, std::allocator >, omnigraph::de::StrongWeakPtr > > > >, 256> > > >, 256> >, const std::pair >, omnigraph::de::NoLockingAdapter >, omnigraph::de::StrongWeakPtr > >, std::less > >, std::allocator >, omnigraph::de::StrongWeakPtr > > > >, 256> > >&, const std::pair >, omnigraph::de::NoLockingAdapter >, omnigraph::de::StrongWeakPtr > >, std::less > >, std::allocator >, omnigraph::de::StrongWeakPtr > > > >, 256> > >*>; btree::safe_btree_iterator::pointer = const std::pair >, omnigraph::de::NoLockingAdapter >, omnigraph::de::StrongWeakPtr > >, std::less > >, std::allocator >, omnigraph::de::StrongWeakPtr > > > >, 256> > >*]double path_extend::PairedInfoLibraryWithIndex::CountPairedInfo(path_extend::EdgeId, path_extend::EdgeId, int, int) const [with Index = const omnigraph::de::PairedIndex&; path_extend::EdgeId = restricted::pure_pointer >]void io::SingleRead::Init()bool restricted::pure_pointer::operator==(const restricted::pure_pointer&) const [with T = omnigraph::PairedVertex]size_t path_extend::BidirectionalPath::Length() constdebruijn_graph::EdgeInfo::EdgeInfo(IdType, unsigned int, unsigned int) [with IdType = restricted::pure_pointer >]const std::pair debruijn_graph::EdgeIndex::get(const KMer&) const [with Graph = debruijn_graph::DeBruijnGraph; typename Graph::EdgeId = restricted::pure_pointer >; debruijn_graph::EdgeIndex::KMer = RuntimeSeq<128>]debruijn_graph::KmerMapper::Kmer debruijn_graph::KmerMapper::Substitute(const Kmer&) const [with Graph = debruijn_graph::DeBruijnGraph; debruijn_graph::KmerMapper::Kmer = RuntimeSeq<128>]Range::Range(size_t, size_t)RuntimeSeq::RuntimeSeq(size_t, const S&, size_t) [with S = Sequence; long unsigned int max_size_ = 128; T = long unsigned int; size_t = long unsigned int]void Range::shift(int)void Sequence::InitFromNucls(const S&, bool) [with S = std::__cxx11::basic_string]void btree::btree_iterator::increment_slow() [with Node = const btree::btree_node >, omnigraph::de::StrongWeakPtr > >, std::less > >, std::allocator >, omnigraph::de::StrongWeakPtr > > > >, 256> >; Reference = const std::pair >, omnigraph::de::StrongWeakPtr > > >&; Pointer = const std::pair >, omnigraph::de::StrongWeakPtr > > >*]size_t path_extend::PairedInfoLibraryWithIndex::FindJumpEdges(path_extend::EdgeId, std::set > >&, int, int, size_t) const [with Index = const omnigraph::de::PairedIndex&; size_t = long unsigned int; path_extend::EdgeId = restricted::pure_pointer >]bool restricted::pure_pointer::operator==(const restricted::pure_pointer&) const [with T = omnigraph::PairedEdge]void path_extend::PairedInfoLibraryWithIndex::CountDistances(path_extend::EdgeId, path_extend::EdgeId, std::vector&, std::vector&) const [with Index = const omnigraph::de::PairedIndex&; path_extend::EdgeId = restricted::pure_pointer >]double path_extend::PairedInfoLibraryWithIndex::CountPairedInfo(path_extend::EdgeId, path_extend::EdgeId, int, bool) const [with Index = const omnigraph::de::PairedIndex&; path_extend::EdgeId = restricted::pure_pointer >]double path_extend::PairedInfoLibraryWithIndex::CountPairedInfo(path_extend::EdgeId, path_extend::EdgeId, int, int) const [with Index = const omnigraph::de::PairedIndex&; path_extend::EdgeId = restricted::pure_pointer 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SHH~H5H9t?*tuHC[1[SHH~H5H9t?*tuHC[1[SHH~H5H9t?*tuHC[1[SHH~H5H9t?*tuHC[1[SHH~H5H9t?*tuHC[1[SHH~H5H9t?*tuHC[1[SHH~H5H9t?*tuHC[1[SHH~H5H9t?*tuHC[1[SHH~H5H9t?*tuHC[1[SHH~H5H9t?*tuHC[1[SHH~H5H9t?*tuHC[1[SHH~H5H9t?*tuHC[1[SHH~H5H9t?*tuHC[1[SHH~H5H9t?*tuHC[1[SHH~H5H9t?*tuHC[1[SHH~H5H9t?*tuHC[1[SHH~H5H9t?*tuHC[1[SHH~H5H9t?*tuHC[1[SHH~H5H9t?*tuHC[1[SHH~H5H9t?*tuHC[1[SHH~H5H9t?*tuHC[1[SHH~H5H9t?*tuHC[1[SHH~H5H9t?*tuHC[1[SHH~H5H9t?*tuHC[1[SHH~H5H9t?*tuHC[1[SHH~H5H9t?*tuHC[1[SHH~H5H9t?*tuHC[1[SHH~H5H9t?*tuHC[1[SHH~H5H9t?*tuHC[1[SHH~H5H9t?*tuHC[1[SHH~H5H9t?*tuHC[1[SHH~H5H9t?*tuHC[1[SHH~H5H9t?*tuHC[1[SHH~H5H9t?*tuHC[1[H?HtAUATIUSHHH8dH%(HD$(1HLd$HD$HD$HD$ LP@u8H|$HtD$D$HL$(dH3 %(u$H8[]A\A]DHLLHHPHH|$HHtH IQ((((X Ph88PHh0HH8hph p@h8`0XHhHHHSHHH߾[HSHHHHGHHtHP HHH[DHSHHGHHHHtHP HH{HC[H`0AUATUSHHHO0HG HQL LhH9HHG HHHVH9HHHHCxHQH9HHCxHH9tH@@ HH9t'H}HLLHHPH9uH[]A\A]DH(HC8HPH@HS8HHC(HC HS0 HHHPH@HHHHHDHHHPH@HHHHCxHH9AVLwAUIATIL9USLuRHL)uPHA,$I9t:+A:,$|SHC@8|CHȈPPHH@8|@(HI9u[]A\A]A^LLfDH@(basic_string::_M_construct null not valid/srv/scratch/marinovg/spades-cloudspades-paper/assembler/src/common/assembly_graph/core/order_and_law.hpp/srv/scratch/marinovg/spades-cloudspades-paper/assembler/src/common/modules/path_extend/pipeline/extenders_logic.cppmath::le(coverage_delta_, 1.0)!math::eq(coverage_delta_, 0.0)flank_multiplication_coefficient - flank_addition_coefficient - HammingGapAnalyzer params: min_gap_score Using additional coordinated coverage extenderTried to create PE extender for MP libraryEstimated coverage of library #Resulting scaffold graph statspset.scaffolder_options.min_overlap_for_rna_scaffolding.is_initialized()resolvable_repeat_length_bound set to Creating Scaffolding 2015 extender for lib #Paired unclustered indices not empty, using themclustered indices not empty, using themCreating scaffolding extender for lib SHPHHHPHSHPHSHPHSHHP toH=u=BHS HP(HS(HHP0tBHS0C8@@HP8HS@HPH[@BHK(HS HHP(HH0HQt@HS HP(HS(HHP0tH=tHSHHXHHHC8H{HHHHHCtHP HHH[UHSHoHHHG(HHGHHHHtHP HHHCH[]f.HSHHG8HHHHGHHtHP HHH[UHSHoHHHGHHHHtHP HHHCHH8[]HSHHHHGHHtHP HHHH߾8[UHSHoHHHG(HHGHHHHtHP HHHCHH@[]@f.SHHXHHHC8H{HHHHHCtHP HHHH߾@[fDHSHHG8HHHHGHHtHP HHHH߾@[AUATHUSHLgH_HI9tsIf.mtyHI9tPHkHtH=u݋EPUuHEHPE PU uHEHHPI9u@I]Ht7HH[]A\A]DHEHPE f.H[]A\A]AUATHUSIHLgH_HI9u nf.mHI9tLHkHtH=uًEPUuHEHPE PU uHEHHPI9uI]HtHHL@[]A\A]HEHPE === Stack Trace ===AWAVH5AUATH=USHXdH%(H$H1H=HHHÉIHōCL%L=Ml'fDsCH=HHI9tH]Ht^HH=HHI$H@IHtt{8uHH H@0L9tHfDI$HxLw LH$HdH3%(uHX[]A\A]A^A_ptr_.get() == rhs.ptr_.get() General Extenders in vector:Extender #i Extender #igap_len_[0].gap == 0read_length_ > g_.k()LAGapAnalyzerHammingGapAnalyzer short_overlap_threshold basic_overlap_length !paired_lib->IsMp() is Path to reference: Path exists: vertices and edges in scaffold graphAll paired indices are empty!creating extchooserUsing mate-pair paired-end paired-end scaffolding single read long reads scaffolding ATUISHHH^dH%(HD$1HHHHP(H$HtHHPH<$HtHP ID$H}HEAD$ HE ID$HEtHP HH]tHHPHHP HD$dH3%(u3H[]A\HFHGF G HFHGHHtHP HHH<$HHtHP HHP HHHu 4F~ATUHS@L%HHHHHC8H}HL#HCHH{tHPHE HuH{HC HE(HC(E0C0HHH8HCH8HC8HHXH[]A\HHL#H߾@HHHfATUL%SHHxH@HHHHHC8H}HL#HCHH{tHPHE HuH{HC HE(HC(E0C0HHH8HCH8HC8HHXH[]A\HHL#H߾@HHHOVAborted by assert: AUATIUSH5HH=HHIH=LDHHHGHHuHH 6HHЃ>H@HOHHH 6HHЃ>HЃ/srv/scratch/marinovg/spades-cloudspades-paper/assembler/src/common/sequence/sequence.hppto >= fromto <= size_H(H9roLNI9IHLFI)Ҁ~u'HMLWHGLGtAHH(H)LWGLMLGHuHH(fDH H5H=~@HL$HT$Ht$H<$Ht$HL$H<$HT$LNI9>H H5H=USHGH-HHHvHHsH1PfDHHH>HHHuGH<t<Tt <L AHsHH9v>HCH H{tHH)HHH>HHЃfHH[]ATUISH-H0HvHdH%(HD$(1HCHH$It$H1O@HHH>HHH4$GH<t<Tt <L AIt$HH9v=ID$I $HA|$tHH)HHH>HHЃ@HT$H4$HH<$HH9tH\$(dH3%(Hu H0[]A\H<$HHH9tH5/srv/scratch/marinovg/spades-cloudspades-paper/assembler/src/common/sequence/range.hppend_pos >= start_posHGHH9rH)SHHCHH9rH)[H H5H=1HG@H9G :AUATUSHH;GHHWJL`LhHLLL!HH HH+BM9LHcJHHHLKHHGxf.H)HH9H9uH9HHM9HVILH}@H;}HHH}@HH;t%fDH;HLLHHPH9uH[]A\A]fDIIH]DfDHHRHfHGXH@LLDHEXHPH@HUXHHEHHHE@HUP'DHHLLHPH@HHHHM9HHLHHPH@HHHHHHpHHHFHHGtH=u @D@HHHFHHGtH=u @D@HHHFHHGtH=u @D@USHHHGHWH9r*H)HUHHEH9rOH)H9HBH[]fDHEHUH9sH H5H=HEHUH9sR1: [, ]; R2: []; match_cnt: USHH5HHH3HH5HHHsHH5HHHsHH5HHHsHH5HHH5H Hs HH[]Hu`(@` Overall edges: Overall covered: True positive: False negative: False positive: To next with distance: To previous: To near conjugate: To close in both strands: No outgoing: Single false transition: Univocal edges: False univocal edges: USHH5HHHHu8HHH5HHuHuHHH5HHuHHH5HHuHHH5HHuHHH5HHu0HHH5 HHuHHH5HHu HHH5HHu(HHH5 HHu@HHH5HHuHHHH5HHuPHHH5HߺHuXHHH[]UIHHHATSIHL`Lht#)p)M)U)])e)m)u)}dH%(H81HFH HDž Dž$0H)HEH\$H(H@HHH0AIT$LHI$HcHH8dH3<%(Lu He[A\]ATUSHoHH9t&IDH;HCH9tH H9uI$HtH[]A\f[]A\AWAVAUATIUSHHFHH|$HnH9H$qLs Lm M9M9H9$M|$M9rsH9$tHLp HI$M9rM9w&HLh HID$M9v_L9uIl$ID$Lm I$Il$I$Ls M9jHD$Ao$AoD$@HD$H[]A\A]A^A_DH;$uM9sL9tSM9H$fsfH9nt{HMHID$Lh mH9$cGfH<$HI$ID$GH9nHtH$Lm Lp M9tH~HMHI$Lp c ()AVAUIATUSIIHHHHdH%(H$1H{LH5HIHLH!Hu I+vH5HHsLHH$dH3 %(LuHĐ[]A\A]A^HHH9EYCoordCoverageExtensionChooserUpdating can be processedAdding vertex through edge /srv/scratch/marinovg/spades-cloudspades-paper/assembler/src/common/modules/path_extend/extension_chooser.hppAWAVAUATIUSHHdH%(H$1HL$ D$H8HtHIoHI!I$HHu HHL<L9HD$pIHD$0H$HD$@HI9fL#HHMLsL!HB HH+qH9uhrH:fT$H|$HzRYUpH|$H*HH+BYfH*^fH~f(fH~L!L9 fH~fH~L!L9DHHHH HHHIHH HHHHHH)HH)H9HHGHH8HD$(HtHH|$ HG0H@HWH|$(H9HtH|$H8H|$HxH|$ HHI9HG0H$dH3%(H[]A\A]A^A_@HHf.C7fDHfHH H*Xf.HHf.fDH|$0H|$@H5Ht$H|$@H5 HHD$HHD$PHuLLHHD$8IHT$XHt$PH|$HH|$PIFH9tHD$(Lt$8L HD$0LHpLL$PLHLH|$PLHH9tH|$0DHD$ L`HHHPLH)HHH)Hv[ID$HD$ H@0HtHL$HHL$HHH|$ HGHHPH@HWHHHG8HG0HW@gHD$ Hp(LH)HL@LpKH9vkL)IIHLLH)L9 L9t LIHL$ IOd0HAHLA(HA I$LaHHA8HHA@HLdHI9J<LD$(LD$(HLL)HLHD$ Hp(H@HHD$(HH9tH)LHL$(HHL$(IHD$ HL$8ILD$(H8HD$ HL$8LD$(HL`AbL9LLD$(H)LLD$(H\$pHH{H5L|$PHsMmLL|$8LL$PLHLH|$PLHH9tH HHCH)HHHHD$8H|$PHH9tHHHHHD$8H|$PHH9tH|$0HHT$8H|$PHHH9uH45L       THVHHHWw fDUSHHHHHUHEHH3H[]uHFF HATUHSHtBt-thHFF H[]A\HHHL' HHLAD$H+E[]A\DH.Ht"H}vH}Ht HHDHH5HxH9t?*tuHEHNHH HxAUATIUSHH_Hu%}DmHLMt]HkL#HtH=uϋEPUuHEHPE PU uHEHPHLMuIEI}1I0HI}IEIEL9tDH[]A\A]DHEHPE .HEHPu@H[]A\A]ATUHSHnHH+.IHHGHGHHHHtH H9waHHHHCHkIL$I$H9t4HrH)HHtHtoHJHHHHH9uHC[]A\HOH;Ot&HtLHVLAHQHHODAWAVIAUATHUSIHHHHH+HHHH*L,L9-ILHT$HMHT$ILtAIt$I<$HrBH:H}H9 HGHHH)HLHMDHtoHFHBHHL9uH9Lbt`HCHH)H HHHH!HILD0LHtoHFHBHHL9uHDIM$HtMLuLeLmH[]A\A]A^A_fDADH I9E1MMkL)H9AVAUATUHSLnHIH?HEMI)H)LHHIIHH9r`HUJ'II)LHIH9M~%foHHGSWHuHE[H]A\A]A^@E1Ht"H H9LH}IL9t:HCLI)IKtfDHtoHKHJHHH9uHtK&LuHEHEhMJ4 ~%oHHGDCDGHuL9%HNI)IJ| HHtoHvHrHHH9uHEATUISHnHH+.HHGHGHHHtHH9whHHHHCHkI|$I4$H9t;HHHtooBAH H H9uH H)HHD8 HC[]A\Verification of expression '!filling_seq_' failed in function ''. In file '' on line . Message 'Filling sequence specified'./srv/scratch/marinovg/spades-cloudspades-paper/assembler/src/common/modules/alignment/gap_info.hppAUATAUSHHdH%(H$18u,H$dH3%(Dm Hĸ[]A\A]H\$ HH{H5H{H5 H{H5H{H5kH{H5 H{H5bH{H5 H{H5 HIH5LH5LIHsLHT$H4$H=HH<$ID$H9tHsLHT$H4$H=HH<$IL9tH=H=}8uH8H H5H=H<$IHL9tHHH'ej  HHGHGHHGG HG(HG0G8AUATUSHLgHI9tnIDmtyHI9tPHkHtH=u݋EPUuHEHPE PU uHEHHPI9u@I]Ht7HH[]A\A]DHEHPE f.H[]A\A]AUATUSHLgHI9tnIDmtyHI9tPHkHtH=u݋EPUuHEHPE PU uHEHHPI9u@I]Ht7HH[]A\A]DHEHPE f.H[]A\A]USHHHHtfDHHHuHEH}1H0HH}HEHEH9tH[]fH[]AUATUSHLgHI9ImH@I9tlHk HtH=tymHkHtH=uEPUuHEHPE PU uHEHPH@I9ufI]HHH[]A\A]EPUuHEHPE PU hHEHPYHEHPE HEHPi@HEHPE f.H[]A\A]AUATUSHLgHI9tnIDmtyH I9tPHkHtH=u݋EPUuHEHPE PU uHEH HPI9u@I]Ht7HH[]A\A]DHEHPE f.H[]A\A]is_initialized()Config not initialized/srv/scratch/marinovg/spades-cloudspades-paper/assembler/src/common/pipeline/config_singl.hppATUSHdH%(H$1=H\$ HH{H5H{H5H{H5H{H5qH{H5 H{H5]H{H5 H{!H5 HHH5HH5HHHsHHT$H4$H=HH<$HEH9tHsHHT$H4$H=HH<$HH9tH=H==Ht-H$dH3 %(HHİ[]A\H=tHHHH=HH HHH@HHHHH`HHHHHXHH HHHHH HHH HH HHHHHH HH HH HHH HH HHH(HH HHH HHhHHH HHHHHHHH HHHHH HH HHH(HH HHH@HH HHH HH HHHPHHHHHHHHHHHHH HHH@HHHHHHHHHHHHHHHHH HHHHHHH5H=FH H5H=!H<$HIH9tLHHH'8=  HHЃuHuDHBH+HAWAVIAUATIUSHL!MHH+dH%(H$1LD$IM!LHt21H$dH3%(HĨ[]A\A]A^A_IL!HuHC8L!HL!HAIHD$M!LHuIL!HuH|$PH|$XHD$PHHPL!L!Ly8LB8HI@HR@Hs8IL!H>L!HGHH|$pLHD$xL!LHH9LT$@H|$HqH>HH!L!HwHHt$xH|$pH8H@H9H|$@HD$HLT$pHl$@HL$0HT$(LD$ LHLT$HD$LD$ HT$(HL$0LT$MEIUL8HHHt$LI$D|$xH$H\$pD$HHL!HP8H@@I9EHT$@HD$HtMEHt.L!HH@8HR@I$IT$HH9tEHuHCHSD8|$uLHHL$HL$uL8HHL@HPFLT$pHl$@LL$8HL$0HT$(LHLD$ LT$LD$ HT$(HL$0LL$8t#HD$M}IMLT$LHPHs8L!Ht3ATIUSHHsLHkHHHu[]A\@HtKATIUSHHsLH{ HC0HkH9tHHHu[]A\f.Ht[ATIUSHHsLH{PHC`HkH9tH{0HC@H9tHHHu[]A\AWAVAUATIUSHHHHwI$ I$0H9tI$I$H9tI$I$H9tI$I$I$H9LL)IHILHI!IMiIHhHxH9tHHHXH9tH(H8H9tHHH9tHHL}XH]PI9tH;HCH9tH I9uH]PHtHL}@H]8I9t&H;HCH9tH I9uH]8HtHL}(H] I9t&H;HCH9tH I9uH] HtHL}H]I9t&H;HCH9tH I9uH]HtHM9Lt IƘI$HtHA$xI$ I$ I$ I$ H9tI$ I$ H9tI$` I$p H9tI$@ I$P H9tI$ I$0 H9tI$ I$ H9tI$ I$ H9tI$ I$ H9tI$x I$ H9tI$X I$h H9tI$P I$` H9tI$0 I$@ H9tI$ I$ H9tA$tI$I$H9tI$I$H9tI$I$H9tI$hI$xH9tI$@I$PH9tI$ I$0H9tI$I$H9tI$I$H9tI$I$H9tI$I$H9tI$I$H9tI$`I$pH9tI$@I$PH9tA$I$xI$H9tI$XI$hH9tI$I$H9tI$xI$H9tI$I$(H9tI|$xI$H9tI|$8ID$HH9tI|$I(L9tH[]A\A]A^A_H[]A\A]A^A_fI$I$(H9tI$I$H9tI$I$H9tI$I$(H9tI$I$H9tI$I$(H9tI$I$H9tI$I$H9H>I$I$I$I$H96,AWAVIAUATIUSHHHOHHI)H)HHH4IH9LH$H]HMMH$III)MtHII9t LHLHL$L$HL$L$IODM)L9tLLLIMHtHLmLuL}H[]A\A]A^A_L<FfDHH9-HuME1E1>H=SHtot+[fGPWuHPC PS HPC uHH[H@HHHHt HHHHGH Ht DHSHHHHGH HtH߾H[HSHHHHtH߾([HHHHt HSHHHHtH߾ [HHHHt HSHHHHtH߾ [HHHHt HSHHHHtH߾[HHHHt HSHHHHtH߾([HHHHt HSHHHHtH߾0[l'!! !: ?  >  ?   m     Ql7-?  lDDI(J3"pJU=3'Z&''G ~' '  ~' ' 'x'''x'''7'&'&''z& & ' z&"'"'"6&#&#'$&%&&a70  .LC]@     +     Uk!I!      +  B'Q %4e}%4e}%4e}   -e   >cq   8ap        ) ^'N2-Glk,Q; S    *   ^ o=Y, .     &     ,  #c-eG  <a`; k   G   +  }tv  '!""   "  )p"""#*    B  .B#[c  B    T   ? .  pwJ!  ~   2   0"?6UZ   J  (*J+--&0q  B#     #   0 PU  ! " =   ).Y;      O  E.5 fHZH      E* -  ?*   (  F9*&  '  %  ;        ='i9"#"   #     ?'U]##6?QL 8  =& -QV  !1 G <    UnY! X  :  !!(vb        \J]l  h        ^B*PN ! B h  : h  Bh:?QA       ,  h5v  7 b     :   5  ?Q9GV({!k+BI1 x    B !C u 4du'\W.c^.Jf` D !    *   +    +  J2!(A(*.&,:))H,P),, + 2) M, ( >) *(,,+,,*+!)C+!(B)))'1'R()+**)+)(H+*)((''!* ("B)#)#($*$H*%&&],!|   5         e  K7C   C     2   C1%%%$% $F%%%&%%$F%%5%$!&%%&&!%%$$$>$$$$$%$ # & t&"&"&#_%$m  a            DK0!#% G %*r    (q(IkC          ".Ma1V G*$=#  =      $9!5!))_<^m]>8*-0 Z ;         7 XA]?s,dy   8aw   (Q   E , 8'"I&a]@.=&t[w<    #        # 3)#238VQ2              E     EEqd !    \+90QQD!}^]g   HSHHH HtH{Ht [D[HHwHHHGHBHHGH=u0@I@O IHHG0HO(t@Ht9f.@IpO IHHw0HFHO(tHO(HuATUIS(HHHHHEHHEHHEHHEHCHHE tH=t{@HEHP HH5I|$0ID$(Il$0HtF[]A\DI@O IHHG0HO( H=H&fD[]A\@I|$0HHtI|$HtHHSHHGH@HtH{(Ht [@[HSHHGH@HtH{(Ht [@[HSHHH HtH{Ht [D[HSHHH HtH{Ht [D[HSHHH HtH{Ht [D[HSHHH HtH{Ht [D[HSHHH HtH{Ht [D[HSHHH HtH{Ht [D[HSHHH HtH{Ht [D[HSHHH HtH{HtH߾@[HSHHHXHtH{HHtH{ HHHtH{HtH߾`[HSHHHHG@HPHtH{ HHHtH{HtH߾[HSHHHhHtH{XHtH{HHtH{ HHHtH{HtH߾[HSHHH HtH{HtH߾X[HSHHH HtH{HtH߾X[HSHHH HtH{HtH߾X[HSHHH HtH{HtH߾`[HSHHH HtH{HtH߾X[HSHHH HtH{HtH߾X[HSHHH HtH{HtH߾X[HSHHHHG@HPHtH{ HHHtH{Ht[f[HSHHHXHtH{HHtH{ HHHtH{Ht [[HSHHHhHtH{XHtH{HHtH{ HHHtH{Ht[[ATIUSH?HtAID$HI\$(HhH9vfDH;HH9wI<$[]A\f.[]A\ATIUSH?HtAID$HI\$(HhH9vfDH;HH9wI<$[]A\f.[]A\HATUHSHHHtHHt7HHL`I9vH;HI9wHH}h[H}]A\SHH߾0[LHH~LNLFLH)HHHxTHH?~2MHH)I8L@LHHxHLHfIHxLHL@H@HHHLHH~LNLFLH)HHHx\HH~2MHH)I8HL@LHHxHLHfDHHxLHI L@HHHHAWAVIAUATIUSHXHRXI+W8dH%(HD$H1IG@I+GHHHHHHHIG0I+G HOXH+O8HHHW@H+WHHL HHHHH HW0H+W HHI9HHD$Ho Mw 1Ld$ HD$[Ht$LIWXI+W8HIG@I+GHHHHHHHIG0I+G HHH9s|HLLHD$ HLHH@HT$ITHD$HD$ HH@H;D$HT$ HD$(W1H\$HdH3%(uHX[]A\A]A^A_fDAWAVAUATUSHYHHHAH\$(H9HD$ &fHT$8IH\$0\$DHD$ HX Lk8HCXHK L)HHHHHHC@H+CHHHHS0H)HHHoLu8HEXE1Le@L+eHHM H\$HL)Hl$HHIH $HJ Le0HI)IIK"H9sMHD$L $I1L+H(HD$L+@(IIHLHHHHHH)HIJH0LXHLHHHHHH)HIDL;XHL!L!H9t.H H5H=f.HL9CH\$fHl$Z(XD$D$H|$ H\$(HD$ H9$D$L$0HH[]A\A]A^A_fHHDL;XHAf.II9sMH\$Hl$tE1Ll$8Mf.HSXH+S8IHC@H+CHHHHHHHHC0H+C HHL9,LLHtfZ(XD$0D$0fDHHH$7HHHHHHHfl$0l$AWAVIAUATEUS1HhdH%(HD$X1 H|$ Ht$(DL$Hl$0D$HB HD$HD$ HD$Wf.9\$Ht$LHMgHT$0HEEH#AUHX I+\$|$ADAIOXI+O8IW@I+WHHHHHHH IW0I+W HHA9EHt$McHLHD$0HH@H;D$(HT$0HD$87H|$H"fIWXI+W8IG@I+GHHHHHHHIG0I+G HHA9t`Ht$LHHD$0HH@H9D$(HT$0HD$8u3H|$ Ht"DHt$XdH34%(uHh[]A\A]A^A_øAWAVIAUATUSHXHN@Hv dH%(HD$H1H9&HIVXI+V8I+NHH\$ Mn IH\$HHHBIV0HHHH)HDM $HLLAy+H\$HdH3%(HX[]A\A]A^A_H|$HcLHʉD$HL$HT$ HL$LH|$HHH!L8HT$ I!HIWH!H!H@8HH!IHH!AHHHpD$Hu0A@16L:LRM9tIH!Hz8H!H8H!H?H!L_LOI9I!H!I9t.fDH H5H=@IW@I9bH H!Hy8H!Hw8H!H>H!L;_HwH!HI9uHIII=AWAVAUATUSHxH7dH%(HD$h1HFXH+F8HV@H+VHHHHHHHV0H+V HH1Hw%H\$hdH3%(_Hx[]A\A]A^A_fHl$@HH HIHH3HD$@HL HFXH H+FHHHHHF H+F(HHHVH+HHTHD$@L0H@MHD$M!I?L!Ht 1=fIG8M!L!HL!HAHIHD$(HL$ IL$I4$H9Ht$HL$uHt$ H|$tID$8L!L#(IMIEHL$@HD$HIWIH9HL$0HT$8sH|$0H^HT$H;LAWAVMAUATIUSIH8L$H|$8Hl$`HT$LLl$0dH%(H$(1HHEHHHD$`I\$ID$H$H9IEHD$HD$@HD$ H$HD$H$HD$(HT$hHt$`H|$HS H|$ Iw IMnHD$@H|$LHHHH$H$LH$H;|$(tHt$HHH9$HlHD$0H|$8HpH|$`HH9tH|$0H$(dH3 %(HD$8uH8[]A\A]A^A_HT$H$HHH9tH|$`HH9tH|$0HHHnot equal gaps in two paths!!!/srv/scratch/marinovg/spades-cloudspades-paper/assembler/src/common/assembly_graph/paths/bidirectional_path.hppAWAVAUATUSDHdH%(H$1$ D$(IIIMDL$ …69H8HHH|Hl$PHH}H5L#H\$0HuHLL$0LHZLH|$0HH9tHfDH$dH3%(H[]A\A]A^A_IH|$It$ I(HD$DL$ ALHpH8ExHIfDIH|$Iu IHD$DL$ A؉LHpH8EJHI@H|$0HIH9tHLI/srv/scratch/marinovg/spades-cloudspades-paper/assembler/src/common/modules/path_extend/path_extender.hpppath.Size() > 1loop with start e1 e2 out cov in = cov out cov cov e1 = cov e2 = fwd_count = back_count = result = AWAVMAUATIUSLHH(LNXH~@dH%(H$1LFHHL$(LH+F8HL)HHHHHHV0H+V HHHI9HGLgH|$PHH HD$8HL$PHfHAH9HD$0IEH!H#W8HH0HqHH@BHR H)H9H*HGH fH*^IL!ËCL$ fH*HC H)H9HGHfH*^HI!IEHHPAD$D$ -XL$@YD$fH*ID$ H)fH*^D~%5^D$f(=XAXf(D$fTf.fHfH!ŋEH*HE H)xfH*^f(^T$XAXf(T$f(fTf.L$1\$\\$P]f.vKf(XAXf(f(fTf.  f.\HH,H1H8IHtHHH$dH3%(H([]A\A]A^A_fDH,ffUH*f(fT\f(fVT$fH,ffUH*f(fT\f(fV\$df.H,#fDH,ffUH*f(f(fT\f( fVf.DH$HHD$HHD$HH5HxHD$HHt$0HxH5HHD$0Ht$8H|$0H5HHD$0Ht$(H|$0H5HHD$(H|$(LH5 HID$ LH5 HID$@LH5HID$LH5 HIAD$fH*IEHID$ H+BEfH*^LH5 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initializedAVAUATUISHdH%(H$1ID$HD$ I@HHD$(H=@HHD$HBHHD$t@Lt$ Ll$LMLH|$HtH|$(HtL$HLLHD$AL$8I$L$ ufL$f.H\$PHH{H5H{H5H{H5H{H5H{H5 H{H5jH{H5 H{H5 HHH5HH5HHl$0HsHHT$8Ht$0H=HH|$0HEH9tHsHHT$8Ht$0H=HH|$0HH9tH=H=AD$8LLHD$D$ D$fD$f.HH$dH3%(H[]A\A]A^@@HHRHHD$HT$HBYP@HHD$HBHHD$2H= HH H5H=H|$0HIH9tHLI|$0HI$HtI|$HtHH|$HHtH|$(HtHHIvAWAVHAUATIUSIHHMD$H?LI)H)HHH H IH9LHT$I<$MD$HXHT$IIMtoHBAEIEH9tIHGHHLH)HHIDHHtoHJHKHKHH9uH0L9t 0 && num_blocks() > 0m_check_invariants()HAUATIUSIHHHsLHSHHkHу?H{0HC8Hs@H)HH)HH9wHHHH9t$H H5H=yDHtHHHjH[]A\A]H{0HC8LHH9tHpcfH H5H=AVAUIATUHHSHH_HHHE@HUHEH)HL4M$M9s"LfHHI9wIALu(IHHUHUHE ID$HEHID$HIHE8Lm0HM@[]A\A]A^H}H_HL9vI>IHHH}HEHEHHAVAUIATUHHSHH_HHHE@HUHEH)HL4M$M9s"LfHHI9wIA?Lu(HHUHUHE ID$HEHID$HE8HJHM@HE0[]A\A]A^fDH}H_HL9vI>IHHH}HEHEHHAVAUIATUHHSHH_HHHE@HUHEH)HL4M$M9s"LfHHI9wIALu(IHHUHUHE ID$HEHID$HIHE8Lm0HM@[]A\A]A^H}H_HL9vI>IHHH}HEHEHHAUHATUSHLgHHHHFHGHFXH+F8Hv@H+uHHHHHH0Hu0H+u HGHGHG HG(HG0HG8HHG@HGHHHGPHGXLL[8HC H{0Hu@HU HM0LE8MKDHH9t7H9tJHtoHH9uIPHIH9HuDIIH9HuDHH+LkhHH+HC`LHHHHH0HH+uxHChHCpHCxHǃHǃHǃHHǃHǃHHǃHǃLHHH+LHuxL)H{xLHLHHHHHLH)HHHVfDHL9t/HtAHHL9HuIrHIL9LufI{IHLuHH+HHH+HHHHH0HH+HǃHǃHǃHǃHǃHǃHHǃHǃHHǃHǃLHHHHHLMJ fHH9t7H9tEHtoHH9uIPHIH9HuDIIH9HuHǃHǃHǃH(H (H[]A\A]HLHLHUSHHHHHHtHu>HHw1H}HE0oE HC0HE8C HC8E@C@H[]oFGHFHGAWAVAUATUSHHHHuH?IHI)H)HHH IH9LHT$H}HuLxHT$IIMt oAEH9t8LHHtoHHH9uHGHH)HHM| H9t5HLfDHtoHHH9uHH)HM|HtLeL}LuH[]A\A]A^A_f.HIHH9HuAE1E1 USHHHOHHtHHC(HH[]H9t1B 9E @SHH_HtRL Dr HFH9C(wHCE1HtHHK L9vHCAHuEHuI9v;1H[H_1H;_HtHHt$Ht$HH HHLI9wr HFH9C(rHH1[USHHHOHHtHHC(HH[]H9tHE H9B wӿr1HB(H9E(@ATUISH`HoEH@ HE HtsUHC@S8HU(HSHHU0HSPHS8HPHE8HE HE8HCXHEHE(HE0Hs LHtDHLHH[]A\HC8C8HC@HCXHCHHCPHs@H{0HD$HHD$H1[]A\AUHGATUSHIHH9L*L9n HvGH9]HHt'HL;h HxHHEHDHH[]A\A]fDrHBH9F(wr H1H9] tbHL;h r w{Hp(I9t$spH{HڹHEHEH[H]A\A]@H(tBH_ HC H9w r3HC(H9Bv)H1HH[]A\A]DrIt$H9p(.HLH[]A\A]USHH_HtQD@HCAHtHËK A9|HCE1HuEIu1HA9HOIOH[]H_1H9_HtHHIDEH HAUHGATUSHIHH9tD*D;n H};HGH9Ht#HD;h H~hHxHEHEH[]A\A]Ð~^HO 1H9HtHD;h H})H{HEHDH(t H_ 9C |&HLH[]A\A]HH1[]A\A]HH1[]A\A]ATUISH0HHËELEHs C C(Ht$HLHH[]A\HHD$HD$H1[]A\AWAVHAUATH!USIH!Mt$hHHi I$DL$HGH;GtHtHHGHHAWAVLw8AUATMyUSHHXHG@LwHdH%(HD$H1HGhLwPHGpH7WHGxHIiO LGHGHG HG(L9G8HGXGhHLJHLJHLJHLJHLJHLJHLJIE1DLMl$(L9IuMfI*l$HE(1L|$ HfHH*d$M LHHRHt9J }HRHuI9t;H }HU Lk0HHT$ LLD$H^D$@(I9Ht@HE(HS@HgHfHH HH*XD$WLfLHt$@HD$@Lk0LLHt$8HD$8LHHSH@)Ht$0E1Ht$Ht$(Ht$f.fH*fHY*XfH*^HHt$LLk0\BX T$D$0HLD$Ht$BX D$(HIHSH@)9|GHNHfHH H*X9HfHH H*XAfHD$HdH3%(u4HX[]A\A]A^A_LfHAL H*XD$iHHHtHHtHspH{`Hs@LH{HtHAWAVIAUATIUSHH8LBh Bxf.L,E,,Ht$ LD$D$A1HȅHЉL$(T$ T$,HHHt$ HCHLD$D$H{PHHLHsLc(C@HCHFD{HHC HcD$ HHC0HcD$(HHC8HLHH5HCHP I]IEH8[L]A\A]A^A_\HL,I1HHHAWAVIAUATIUSHH8LBh Bxf.L,E,,Ht$ LD$D$A1HȅHЉL$(T$ T$,HHHt$ HCHLD$D$H{PHHLHsLc(C@HCHFD{HHC HcD$ HHC0HcD$(HHC8HLHH5HCHP I]IEH8[L]A\A]A^A_\HL,I1HHHUSHH_HtQLFHCAHtHHK(L9wHCE1HuEIu1HI9HGIGH[]fH_1H9_HtHHILEHH(HUSHHHHu H1[]ÐHHHH[]AWAVHAUATUSHHHH@L$H@H|$(dH<%(H$81HzIEL2HT$HHt$H$H$HHL$ DŽ$L)HDŽ$HDŽ$HH|$HH 5H$I9DŽ$HDŽ$HDŽ$HD$HH$H$H$HD$PL$HD$0H$Il$HD$8HD$`HD$@fHD$HD$`HD$hHD$pHT$ H|$0Hp`HPHt$PLH|$8HPH$L$DŽ$HDŽ$H$H$ L9HDŽ$(DHLHI9uH$HD$HLxL9twHHSHHHH@HtH9P(sH@HuH9t3H;Q(r-HD$hH;D$pzHtoHSHPHHD$hHI9uLH$HtH|$XHtH|$`L|$hI9Ht"fHLHI9uH|$`HtIL9t$NHD$HL`L9tiImfH$Ht9HSHf.HH@HtH9P(sH@HuH9tH;Q(s H|$(HHI9uH$H|$HH$LH$8dH3<%(HD$(HH[]A\A]A^A_HI9fH|$@HHH$111uHH|$XHtH|$`HtH$H|$HH$LHD$(H8HtHHHH$LHH$HqgUSHHHHu H1[]ÐHHHH[]AWAVAUATUSHHHHuH?IHI)H)HHH IH9LHT$H}HuLxHT$IIMt oAEH9t8LHHtoHHH9uHGHH)HHM| H9t5HLfDHtoHHH9uHH)HM|HtLeL}LuH[]A\A]A^A_f.HIHH9HuAE1E1 HGH;GtHtoHHGÐHHUHAWAVAUATSHHBXH+B8HMHPdH %(HM1HuLxHDMHHHGHGHHHB@H+BHHHHJ0H+J HDFHZ HJxHLmIHpHZH`HXIHh1fDHH;hHELXLH`H@I)LHEHEDMLHpLDDMHEHDMHMLxHPH0HEjHx@XZfH~fH~L!L9Hx|L L9J8tsHFff.8HPLLeEHH;h HMdH3 %(HPuHHe[A\A]A^A_]HLH)DHH\ff.rHHPH8HtHread_length_ != -1ulIdealInfoProviderEstimated coverage Correction coefficient AWAVEAUATIUSHHHdH%(H$1H~ HL$LD$ HLHPf(HC f(H_T$XfH*HCH@HfH*\\$X^\$H8IHtH1?H8IHtH1u}HL$LD$ LEHHHEHUH9t&HHDD$HY@@H9uH$dH3 %(HH[]A\A]A^A_Ll$PLI}H5I}D$ILt$0IuLLt$HD$(LL$0H|$(LH<1H|$0LHH9tLDLl$PLI}H5I}D$HD$0IuM6HHD$LL$0LH;1LHD$H|$0HH9tL+fHfHH H*XfHfHH H*XfH{ EH H5H=7HLHHHD$H|$0HH9tHT$H|$0HHH9uWeightCounterSupposedly covered edge ideal weight at dist Actual weight After normalization threshold Querying paired library for edges UHAWAVAUATSHhHHGdH%(H]1HGIAIHxHHLHH9H@ILHH HHHDH8IHtH1 HHH LpxHMl$HLLIELP LHHLHDuD0HHHLLLEHPH0jAXZH8IHtH1 A|$ t^H8IHtH1rAD$8HLuf.w)HHxLHHH9SH8IH3H1LLI~H5H3I~H5HIHID$LHHq HHHHHHHH(H LH5HILH H;tHHMmHpL LH1LH H;tHLLI~H5"LHHLMt$H HHHHHHLHHHHHHHxH5HIIt$HHHH(H LH5 HHpHHLLqxLHHcuHpH0H H;tHHHH9tHHMmHpL LH1LH H;tHBfDLLI~H5I~HIvMmL LH1LH H;tHHLLI~H5I~LH5 HIAD$8LLHMmIvL LH1LH H;tH@H]dH3%(HxuHe[A\A]A^A_]HH HHH9tHHxH8HtHHHHH HH9uHHH HH9tHHHH9ttHHkCounting weight for edge Excluded edges Total ideal coverage Lib weight UHAWAVAUATISIMEHXHHdH%(HE1H8HHtH1SIu(HHEHLHHIPHHLHAWILLHHHLXZL9fMD$ML$HDMt9HLLHH@HtH;P vH@HuL9tH9Q vXNHI9uHtHLL9I|$MD$Ht1HLH HH@HtH9P sH@HuL9tH;Q sXVHI9uH8IHtH1vH8HHtH1H8HHtH1MHHHDžfu^HHtHEdH3%(He[A\A]A^A_]L@LLI~H5I~L#H IvHL LH1LH HH9tHH@HHH{H5HHHHGHrHHH HLMLHHH(H HxH HCH9tHHHH9tHHM'HpL LH 1LH HH9tH`H@HHH{H5HH IuHHHHH(H HxH HCH9tHHHHHHL HLH1H HH9tHL@LLIH5 IL#H IwHL LH1LH HH9tHfHHHHtHIHLH HIH9tHHHHH9tH HIH9tL^H HIH9tLHCUHAWAVAUATISIIHHv(HdH%(HE1HGHGH}HH`LXDpPHEH]H9HhIG HHIGxHPHEHxMt$HPHxILz HHUDpHHHxD HDtHMHDtLXLHQH1jH`AA|$ XZt^CHHxLEHEHH9hLHEHhHhHtHH}dH3<%(LuHe[A\A]A^A_]H}HHtI}HtHHSHLIHHH0HdH<%(H|$(1H|$H|$LT$L9LKfLCHDMt9HLLHH@HtH9P sH@HuI9tH;Q sXFHI9uHtD$D$HD$(dH3%(u H0[fUSHH_HtQL@HCAHtHHK I9rHCE1HuEIu1HI9HGIGH[]fH_1H9_HtHHILEHH HUSHHHHu H1[]ÐHHHH[]UHAWAVAUATLuSIHMEHXHuHv(dH%(HE1HGGHGHG(HUHGHG LHPHHUHuH}AWMLMH}XZHtHELuI9HEIIIHEHEI9tbHE@fH~fH~L!L9Hx~L L9J(tuHvff.vHuHHEHEI9uHEHEHEHtHHMdH3 %(HuAHe[A\A]A^A_]fDHLH)DLdff.)rH}IHtHsHLH}IHuIAWAVAUATIUSH(GHGdH%(HD$1HGHG(HGHG HH$Lt$I9HII fHI9tWCfH~fH~H!H9HxoL L9J tfHvff.vHLHI9uH$HtHHL$dH3 %(Lu=H([]A\A]A^A_DHLH)DLsff.AH<$HHtIuLHHUSHHHHu H1[]ÐHHHH[]/srv/scratch/marinovg/spades-cloudspades-paper/assembler/src/common/assembly_graph/core/graph_core.hppCheckUniqueIncomingEdge(v)AWAVAUATUSHH8HV@H+VHdH%(HD$(1HFXH+F8HHHHHHV0H+V HHƒDjDE9|.H\$(dH3%(DH8[]A\A]A^A_IMcH LLHH$HH!EL1xI!IFH!HHƒu{H{HPHH+HgHH)HuafH8AH!HO8H!Hy8H!H7HH!LvLL<$IAy@HHH H5H=AWAVAUATIUSIHXHN@Hv dH%(HD$H1H9t]IUXI+U8Ho@I+MHMu HHHBIU0HHHH)HLHD$ HD$LLHy*HD$HdH3%(xHX[]A\A]A^A_H|$HcLHʉD$HL$HT$ HL$LH|$HHH!L8HT$ I!HIWH!H!H@8HH!IHH!AHHHpD$HuH5B@LLJM9tIH!Hz8H!H8H!LI!IzMRI9H!H!H9t.fDH H5H=@IS@I9jH H!Hq8H!Hv8H!H6H!L;VHNH!HH9uHIII=AWAVIAUATIUSHHXHN@Hv dH%(HD$H1H9teIVXI+V8Ho@I+NHIHHBIV0HHHH)HLIF H$HD$ HD$HLHGID$I+$HHHHIFXI+F8HHHHIF@I+FHHHIV0I+V HDHcLkL}MI)HD$ H$IF HD$HCHt5Lf.HH@HtH9h sH@HuL9tH9j v;H<$Ht$HHD$ HIVH#8HG H+BH=M9LtIvfDHD$HdH3%(HX[]A\A]A^A_DH4$H|$HcHʉD$HL$HT$ HL$H4$H|$HHL!L(HT$ M!HIUL!L!H@8H:L!HHHL!HHLPD$Hu/H!H4$HHl$ HH~H9tH2L!LF8M!MH8M!MM!M;PMXM!L!I9t+H H5H=@H@H9VH L!Hq8L!Hv8L!H6L!L;VHN`L!HI9uHHHGAWAVIAUATIUSHHhHN@Hv dH%(HD$X1H9teIVXI+V8Ho@I+NHIHHBIV0HHHH)HLIF H$HD$0HD$HLHGID$I+$HHHHIFXI+F8HHHHIF@I+FHHHIV0I+V HHTHHT$(}In Ld$0ILl$(.HHwLHHD$(HPHHT$(5LHHD$0H8L!H8L!H?L!HL!HL!HHƒuHtHPH+HHHvH|$(HD$XdH3%(Hh[]A\A]A^A_fH4$H|$HcHʉD$HL$HT$0HL$H4$H|$HHL!L(HT$0M!HIUL!L!H@8HL!IHL!AHHHpD$HuKH#f.HsHHCHCHC(HCHC L*LRM9tIUL!Hz8L!H8L!H?L!HHLZI9L!L!H9t2f.H H5H=@IU@L9,H L!Hq8L!Hv8L!H6L!L;^HN8L!HH9uHIII5to_exclude.empty()vector::_M_range_check: __n (which is %zu) >= this->size() (which is %zu)AWAVAUATUSH8dH%(H$(1Hy(H|$@Ht$ HT$8HL$pH\$ HCXH+C8HS@H+SHHHHHHHS0H+S HDH HH$H$HZH$HDŽ$H$HD$H$H+$H|$H$HH\$0H|$8H$HHWHH9HHD$H\$xHH!HD$(fHD$ HpxHH+HHHD$0H`HH?BH\$ IIL)HH4H4H)HHHHHt$H;T$HvHt$@H|$(L,щ$HHVHw I!HjMe HHE@LH@I)H)HHD$HHtNLHfDrL;b(wHHRHtH;Z vHRHuI9tH;Y rL;a(fL$Ht$H|$DŽ$HDŽ$IGHDŽ$H$L$DŽ$H$H$HFHDŽ$HDŽ$H$H$Ht$H~H$H$LHHMrL;`(wIH@HtH;X vH@HuM9tI;_ rwyM;g(ssf.`HX H\$IL`(@8H@8H@IV LIFHIFPHIFXHILHHIIW@Mg8D$HtH@u]I4B HI4>HH8HHL9tUEtLDH))HIT>H҃@tLDH))HI4>HHуDH/fH*MfI*^HD$H \ $tHH$HtHt$H|$l$ 4$l$`$u4$f.t$ HD$0H9Xu|$DHH9\$8|$DL$H8HHtHH8HHtHH\$(Ƅ$C {8o$HC()$H$HC0oCH$)$Lt$DH\$H$fo$$C H$C8HC(H$fo$HC0CH$HdH3%(HD$HHX[]A\A]A^A_LfHAL H*XfHfHH H*XfH8HHtH1H8HHtH1<$؉D$D|$ @fRH|$HH$H$HC@H$HH{XHCH$CP($C8H$HCPHSHHK@H$$HCXH$HH$tƄ$f%*YXXf(f(fTf.Jf.H,HD$8H|$8HHEHD$8$L|$PLLt$XH5 LHLLeH$IwHL$LH1LH$HH9tH|$PL|$PLLt$XH5L$LLeH$IwHL$LH1LH$HH9tH|$PmH8HL$HHL$eLI|$H5H$It$HHL$LH"HH$HH9tL\H,HHH1H|$8H,ffUH*f(f(%fT\f(fVf.s~L$LI|$H5I|$HLmH$It$HL$LHLH$HH9tLL$LI|$H5 Ht$8I|$LmH$It$HL$LHLH$HH9tLLI|$H5&I|$D$ H$It$HHL$LH(HH$HH9tLH8HHLI|$H5HD$(I|$p H5 HHD|$DHDH5 HHDHH5HH$It$HHL$LH*HH$HH9tLHD$H@8H H5H=HLHH$HHH9tH|$xHHtH$HtH$HtH$HuH H5H=HcKYAHH|$PHH$HHH9tSWOverlapAnalyzerAnalysis starteds1 s2 Empty overlapResult /srv/scratch/marinovg/spades-cloudspades-paper/assembler/src/common/modules/path_extend/overlap_analysis.hppmatch_cnt <= std::min(r1.size(), r2.size())shift > 0 || size_t(-shift) <= start_posAWAVIAUATIUSIHHHdH%(H$81H8HtHHIUIHH)H9кHGI9FIFFHD$H8HD$HtHH8HD$HHHL$PH $HL$H<$L1Lt$0IMHLLH|$8tHD$XHmHHCHCHCHC H|$HHtH|$hHtHH4AIcHSHHH8HHtHH$8dH3 %(HHH[]A\A]A^A_@L$LI|$H5HD$PHL$1LHH$H4$I|$H|$hHtHD$It$HHD$H$HHD$L$H|$LHeHD$H$HH9tL@L$LI|$H5HD$PIMHLHH$H4$I|$H|$hHtHD$It$HH$H$HHD$L$H<$LHdHD$H$HH9tL fDH{H{H{H{ H8HHHL$LI|$H5L$It$HmLL|$L$LHhHfDHD$PH$]f.Iw8L$D$,H$IOHDŽ$Ht$H4$IT$0HƄ$HDŽ$H$HDŽ$HDŽ$HL$HD$Ll$pLL$LLD$Ht$pHL$,H|$MLH|$pIAL9tHD$H$HH9tEH$tf$HHCHCHCHC HtH$I0L9tjL$LI|$H5H$It$HmHHD$L$LH`HHD$H$HH9tL@L$LI|$H5I|$HL$It$HmLL|$L$LHmHH$LHH9tL@HcH9QHH9@H H5H=fH$II)LHHiH?H9LIH$H$II)H9tHLLK.I9 K4.LE1@уuIHH9u勄$Hc$HH9$VHc$HcH9r~HCHCH3HSHKHLk H$HII9LGM9wlH<$Lk HII9LGM9)MtLH$ fH H5H=#@E1E1HHD$H$HH9tLHH|$pIHL9tHD$H$HH9tH$HtH$I0L9tH|$HHtH|$hHt|HHbMHtLH H5H=HoH|$hHHHsHT$H$HHH9j`Considered max overlap Analyzing edges Low alignment sizeMax flank length - Low identity scoreToo long flanks for such alignmentLess than k+1 nucleotides were left of one of the edgesAWAVIAUATIUSHdH%(H$1Hz(H<$u Hz0H$ HH{H5H{H5 H{H5H{H5cH{H5 H{H5iH{H5 H{HH5 HHH5HH5HL$HsLH$H$H=HH$ID$H9tHsLH$H$H=HH$IL9tH=H=I}(' I}0 HAE L$HD$`LD$pHL$hHt$_H$IHD$pD$hD$`D$_LD$HL$0HD$(Ƅ$Ƅ$DŽ$H8IHtHIEImHD$IEHD$8IEHD$IFHD$ H8HD$@HtHHL$HH|$LH!H#T$HHH8HHtHH$H$H9'H)HT$xHD$pH9QHH)H9HCI9^ZHI#EHh H$H)H9HBH8IHtH-HfH*AYF%XXf(f(fTf.v7H,f%fUH*f(f(fT\f(fV,H$H$A^ H9 H)HT$pHD$xH9H)H9HB95H$HHHt$0H|$(HD$`HD$h&IFHL$xH@H9v)IUHH$H!HR H)H9H8HHtHfH<$IH$dH3 %(H$Hĸ[]A\A]A^A_ÐH$ HH{H5L$HT$Ht$ HLH$H$H{H5HHD$HH$HT$HL$8Ht$ HH$H$H|$HH$HH9tH$ID$H9tHD$@HsLH(L$LHsHH$IL9tH-fHfHH H*XfH$ HHt$H{L$HsHmLL$LHPHH$IL9tHf.H$ HH{H5H{HI,$L$HsLL$LH[HH$IL9tHHHfH*X%XXf(f(fTf.Pf.H,HH$H$H9H H5H=HT$xHD$pH9fDH8HHLH3H$ HH{H5L$HsHmLL$LHSHfH$H$H9DHD$xHT$pH9H)H9HB9H8HHZHAH$ HH{H5L$HsHmLL$LH]HH$IL9tHf\HH,H1DH,f%fUH*f(f(fT\f(fVf.sxfDH$ HH{H5H{HI$L$HsLHD$L$H|$LHYH$IL9tHH8I#uH|$HHn H)IMIUI}IuL$I:IrIJIRAB Ij(IZ0AB8E@H$ HH{H5L$HsHmLL$LHgHfDbfH*t$H|$H fH*|$HHt$0H|$(^HD$h|$`|$=D$f.fDH8HH,HH$ HH{H5L$HsHmLL$LHbHfHfHH H*XhfHfHH H*XfHfHH H*XD$H H5H=HHH$IL9tHIHHHHH$HIH9tLHH$IHL9tHUAWAVIAUATUSHHHGHHw(H_II)IIK 'H< H9vEH)HHJ HEH]HHIH)H9H9HL9LHCLlHI9J<T$ H $LH $T$ IHu(H)HHJHEHEHLHPH9t H)HH}ILuLmHH](HEHHE JD#HEHHHE8HHE@H[]A\A]A^A_DH9tLH)HAWAVIAUATUSHHHGHHw(H_II)IIK 'H< H9vEH)HHJ HEH]HHIH)H9H9HL9LHCLlHI9J<T$ H $LH $T$ IHu(H)HHJHEHEHLHPH9t H)HH}ILuLmHH](HEHHE JD#HEHHHE8HHE@H[]A\A]A^A_DH9tLH)HAWAVIAUATUSHHHGHHw(H_II)IIK 'H< H9vEH)HHJ HEH]HHIH)H9H9HL9LHCLlHI9J<T$ H $LH $T$ IHu(H)HHJHEHEHLHPH9t H)HH}ILuLmHH](HEHHE JD#HEHHHE8HHE@H[]A\A]A^A_DH9tLH)H!data_.empty() || gap == Gap()AWAVAUATIUSHHIH(dH%(HD$1HG@H9G `HKPHQH9HtH(L`HHC@HHHQH9Ht AoEHHHSHHH!HHLp HCxL+rIcUL@HHH9H9uHHQH97HtL0HHAoELL;)$t-II}MHHLIHPL9uHD$dH3%(SH([]A\A]A^A_f.HHHMDD Eu DAEtWHC@H;C |AuuAMuAUu A} YH H5H=fyuy u뚐LsXHKLH+CHH)HwH{1ҾLsXIFHC@HtH(L`HCXHPH@HSXHHCHHC@HSPf.LHLH+HH)HwH1ҾLIFHHt AoEHHPH@HHHHHhLHKpLH+ChHH)HwH{h1ҾLIGHHtL0HHPH@HHHHHRFound PI with back weight , weight threshold AWAVIAUATIUSHHHhdH%(H$X1HGL$HT$HHt$1H!H$H@Lq HDŽ$H@(HD$(HGI|$D+pH$HDŽ$HDŽ$HDŽ$HDŽ$HDŽ$HDŽ$HDŽ$HDŽ$HDŽ$I|$h1HDŽ$HDŽ$HDŽ$HDŽ$HDŽ$HDŽ$HDŽ$HDŽ$HDŽ$ HDŽ$(HDŽ$0I$1HDŽ$8HDŽ$@HDŽ$HHDŽ$PHDŽ$XHDŽ$`HDŽ$hHDŽ$pHDŽ$xHDŽ$HDŽ$HDŽ$HDŽ$HH\$PLLLH$DŽ$?HD$PHD$TD$\HH#D$E1HD$0HD$HHD$8fDLHUHL$(Ht$0H+JHHV H9H}EIHT$HL$LHLPHCD$XLl$`Ll$xHD$hHD$pAHt$`HD$H|$8E L$HD$HD$ L$PAuL$D$ f.Ht$HT$HLDt$PLl$TD$\H$H9$1fALH$XdH3%(DuHh[]A\A]A^A_fDH8HHtHtL$LI}H5I}D$H5HIE LH+H$IuHL$LHHH$HH9tLH$HHH9tHLLHHHt$`HHHHI|$hHI|$HHwc_ != nullptrSingle loopMultiple cyclesAWAVAUATIUSHHHLNXHV@LFHdH%(H$1LH+N8HL)HHHHHH HF0H+F HHHH{HL9Ll$ HLrLzE1HIUMH@D$(HT$8HT$@LHD$0HD$HHt$0L$C H|$ $LD$D$L$ u $D$f.1H$dH3%(XH[]A\A]A^A_IQH$H4$H4$LNXHV@LFHLH+N8HL)HHHHH HF0H+F HHHH H5H=zfDHLMLHthH8HHtHDH4$H{H4$HNHV@LFHLNX DH8HHtHufHl$pHH}H5L#H\$PHuHLL$PLHLH|$PHH9tHrDHl$pHH}H5L#H\$PHuHLL$PLHLH|$PHH9tHH H5H={IHLH|$PHIH9tHt$0HLHAWAVIAUATHUSHIIHL$LL$HHL$Ld$tHH[]A\A]A^A_I0MMLLHHHCAWAVAUATUSHLcH=LkhHXHdH%(HD$H1HFH;1LHCHCHC HC(HCHC0HC8HC@HCHHCPHCXHC`HCh1HCpHCxLHǃHǃHǃHǃHǃHǃHǃHHǃHǃHǃHǃ1HǃHǃHǃHǃHǃHǃHǃHǃHǃHH HE@H9E ǃ(?H;EHD$ HD$$D$,'HH#PLd$ HLHHR@Hp8HEXH+E8HHHHHE@H+EHHHHU0H+U HDHcHLm L|$HjH)H<$IHT$H4$HLHHD$ L0PH@ t$T$LHL$D$HD$ HHL!HQ@Hq8LH;l$uH|$HdH3<%(Hu)HX[]A\A]A^A_HEXH@HHHHLHLHHfrom <= to && to <= Size()AWAVAUATUSHhdH%(HD$X1H9aIHVXH+V8HF@H+FHIHIHHHHHHHF0H+F HHI9ID$H=HkLkh1HCH;HCHHCHC HC(HC0HC8HC@HCHHCPHCXHC`HCh1HCpHCxLHǃHǃHǃHǃHǃHǃHǃHHǃHǃHǃHǃ1HǃHǃHǃHǃHǃHǃHǃHǃHǃHM9H ǃ(?=ID$ MLIHD$HD$0HD$HD$ HD$pHHI$HHH)HHo)D$ Ht$H|$HHD$0HL$HH0HPHII9I9I$HI+$HHHgHHHfIT$XI+T$8ID$@I+D$HHHHHHHID$0I+D$ HHI9(A@J)H|$XdH3<%(HuXHh[]A\A]A^A_fDH H5H=@D$ HD$$D$,LHHHHHHHLongReadsUniqueEdgeAnalyzerNot equal begin ; not significantly differentNot equal end AWAVAUATIUSHHMLHE1LH<$HHLL$dH%(H$x1E1IHLLHIHD$ HAA Ht$pIMLIHLLT$L$HT$ IL$HLL\$HL$HT$Ht$H<$D$(L$0H8HD$@HtHmH$T$(@f.d$0f.@f(Yf.Yf.H8HHHH$HHl$8H}H5L$HuHLL$LHHH$IL9tH|$8H|$H|$H|$H|$E1LHLHE1ILHLHIIHD$pINLHHHD$IH$IOLHHHD$IHL$H<$LLD$L$ H8IHtHH$\$@f.Al$ f.1@f(Yf.Yf. H8HHHL$LL|$8IH5L$IwHLL$LHHH$IL9tH|$8H|$AH|$ f.E1H$xdH3%(DHĈ[]A\A]A^A_ÐH|$E1H|$H$HHD$8HD$8H5HxHL$PHu LHHL$HHD$PHpHD$8HxH5HID$(LH5HIH|$HHT$ Hs HD$PLHpH5HID$0LHT$@HD$8L$LHHpHT$ L$H|$ LHH$IL9tH|$85fL$LLl$8I}H5HD$PHu LHIHD$PI}HpH5HHD$HH5HHHs LLHD$PHHpH5HHD$ HL$IuI$LL$LHHH$IL9tH|$8H$IHL9tH|$8H|$H|$HHHHLooking for IS cycle last is pos looking for 1sr IS cycle AWAVAUATUSHHHdH%(H$1H8HtH1IHCXH+C8HHHHHC@H+CHHHHS0H+S HDdEHD$ LsxH\$E1McH$HAIALLHL)HT$ HH9rDd$ H\$H8HHJHCXH+C8HHK@H+KHHcT$ H<$HHHHHHK0H+K HHHT$xL\$XHt$`LT$hHL$PLL$@HHCXL{8L)LC@LsHHH{0Lk HHHl$HLd$L)HIHL)HLHl$HL)HHHHl$LLd$L)HIHL)HLH9l$1U@H$HHHCXL{8HLC@LsHH{0Lk HT$xL\$XHt$`LT$hHL$PLL$@L)L)M)HHL)HHIHL)HHL)LHHHHHH)H9]H8HHtH1H<$H$dH3 %(wH[]A\A]A^A_fDL$pLI}H5HI}L$PIuM$$LL$PLH1LH$PIL9tLfD;l$ H\$Dd$ H8HHdH1NL$pLI}H5 t$ I}L$PIuHmLL$PLH1HH$PIL9tLD$ HD$ H$bL$pLI}H5I}L$PIuHmLL$PLH1HH$PIL9tLDd$ H1HLH<$HHLHH$PIHL9tH$PIHL9tHFound IS cycle last edge pos last_edge_pos > posresult pos last_edge_pos > -1(int) path.Size() == last_edge_posAWAVAUATIUSHHdH%(H$1D$ H8HtHH|$ {HCXH+C8HHHHHC@H+CHHHHS0H+S HlkHcL{xE1Lt$H$fDI@H$LLL)HT$I$H9rH8IHtH9l$  HCXH+C8DmLc@L+cHHHIHJ Lc0L+c IIDAA9|KfDHAE9uHCXH+C8HHHHHC@H+CHHHHS0H+S H9 H8HHtHuVH$dH3 %(D$ H[]A\A]A^A_ÐH H5H=@Ll$PLI}H5 t$ I}Lt$0IuHLLL$0LHHH|$0IL9tLHSXH+S8HC@H+CHHHHHHHHC0H+C HH9H H5H=fDH H5H=@Ll$PLI}H5t$ I}Lt$0IuHmLLL$0LHHH|$0IL9tLvf.Ll$PLI}H5I}Lt$0IuM$$LLL$0LHLH|$0IL9tLHLHH|$0IHL9tpos >= 0ScaffoldingPathExtenderRC connectionCycle scaffoldingAWAVAUATUSHHH8dH%(H$(1HF@H9FHHHH@H;BHL$ HD$( HK@H;KHQHH#AHH@H@8H9JH$PH$PH$XHD$,Hl$ L2LjHHHL$LLHDŽ$PHDŽ$TƄ$\HD$xH+D$XHL$`H+L$hHHHHHHL$PH+L$@HHHwLH|$ HH9tH8HH|$ HIH9tHLIHATUHSHHILU0IHMHEHtYE1LMHHHHHHtHIpHT$ IZUSHH_HtQL@HCAHtHHK I9rHCE1HuEIu1HI9HGIGH[]fH_1H9_HtHHILEHH HAUHGATUSHIHH9tL*L;n Hs;HGH9Ht#HL;h HvjHxHEHEH[]A\A]ÐvfHO 1H9HtHL;h Hs+H{HEHDH(t H_ HH9C r4HLH[]A\A]HH1[]A\A]HH1[]A\A]SimpleExtensionChooserExcluding edge because of no ideal info #Excluding edge because of ambiguous paired info #AWAVIAUATUSHH$HL$ HV@HN dH%(H$x1H|$H9t`HFXH+F8H_@H+VHLf H$IHHHHHHV0H)HLHT$ LHH$IHPHHHH)HIHIFXI+F8Iv@I+vHHHHHHIv0I+v HD|0E_HD$ HD$(MHHD$8IcHD$HH$HD$XH$HD$`DHD$ Hl$HH+l$(H@Ht4Ht$8 HH@HtH9h sH@HuH;t$8t H9n H$Iv H1IHHD$0H$HH@HD$H$HL$HPHHHD$PH9unYH8HD$@HtHmHt$0H|$ H$H$HHPHHH)HIH9IvxHI+HHHHH?|IIIL)H4H4H)LHIH9|H|$H[HHHWHHzjHT$Ht$(L@H@fH~fH~YL!L9^HHH H9HHf.AHD$(EHLd$xHD$pH9D$xHDŽ$HD$L$L$HDŽ$iH$HD$(HD$0H$HD$HD$E1LHpHD$(H@LHH|$0HL@AH$H;l$H$H] MHu(fIH@HtH;X vH@HuM9tI;_ s\0MH|$HP HX @(LIHI9t HLLH$AG(HH;D$HKH|$0H$HH$HD$(HL$(H8H@HH)HHH9HL$H$HQH9 L$HL$M|$/HHHD$HH9H$H8H@H)oC H)$Hŋ$H9uH8IHtHHt$0H|$ wHHH)'Ht$PfDHHf.f.HHH5LHD$8HD$8IHfD1HB I9G @DH|$XH|$`H5)H|$`DHD$@HL$XHHqHD$hH$HHD$@L$H|$hLH8HD$@H$HH9tH|$XH$H|$H$xdH3%(pHĈ[]A\A]A^A_LcLHLD$H$LHHLL!HHD$H$Ht$HHL!H@8L!HL!L@LHD$$L$H$M!D$I9H2L!H~8L!Ht H8L!HH>L!L;OHwOL!HL9tH H5H=LH51LH$LIt$LMmL$LHJLH$IFH9tLHt$0H|$ I1+A8HObH=H1H$IHL9tLH|$H$HHH$H|$0HHLd$@H$HIL9tH|$XHHAWAVAUATUSH:t1H[]A\A]A^A_t\LgL;fuHF H9G tXE1MLnHoufDIM9tLHLALA8tfHFH9GuF8Gu_USHdH%(H$1~8D$`F 8oF$$HF0)$H$HF(oH$)$G oGD$(HG0)D$@HD$0HG(oHD$8H$)D$PH9D$X<$tH|$ Ht|$`tH$HtH$dH3%(H[]GPHWHHO@HT$D$HGXHL$HHD$ t$/FPHVHHN@HT$pD$xHFXHL$hHH$tD$`HH$Hl$`H{P H$H9D$HHu@H{@H$H9D$8H$H9D$0$9D$(HH<$HtH|$ Ht|$`tH$HtHgap.right_trim() == 0 && gap.left_trim() == 0Edges are supposed to be too far to check overlapsEstimated gap looks unreliableNot supported yetCompositeGapAnalyzerTrying to fix estimated gap between Overlap was not foundAWAVIAUATIUSH8dH%(H$(1Hz0Ht$u Hz(H$HH{H5H{H5-H{H5H{H5jH{H5 H{H5iH{H5 H{H5 HHH5HH5HLd$@HsLHT$HHt$@H=HH|$@ID$H9tHsLHT$HHt$@H=HH|$@IL9tH=H=I}0I}(wHH8HHtHCHL$AE ;A(IHL$HYHIH9HL$Ld$@L$@EHLLLLL$tH$HtD$D$T$x[tH$HtHtHHH9\$t-HkH3HrH=_E[fDAE HL$9A0H8HH$Ht!HH$IE(A}8AoEAu Ƅ$H$IE0)$$AoEH$)$[HHD$H@89N$$fo$AG8AG H$AIG(H$fo$IG0AGH$H$IG@H$HIXIGH$AGPE$AG8t~H$Htqj@H8HHtHGAE AoEAAoEAG IE(AGIG(IE0AG8A}8IG0H$(dH3 %(LfH8[]A\A]A^A_fDD$`AG8foD$@AG HD$hAIG(HD$pfoD$PIG0AGTHtHDH$HH{H5Au H{H5 HIHD$Lt$ IMIULHpHT$(Ht$ LH5HHD$HD$Ld$@IMIULHpHT$HHt$@H|$H|$@ID$H9tH|$ IL9tHsLHmLL$@LHHH|$@IL9tHxH8HHtHLf.H$HH{H5Ld$@HsHmLLL$@LHHH|$@IL9tH:AEPIUHIM@IWHAGPIEXIO@HIGXtAG8B@H$H$IG@H$HIXIGH$AGP|$xAG8_H$HNDAEPIUHIM@H$$IEXH$HH$tAu Ƅ$[fDAG8fDH$HH{H5Ld$@HsHmLLL$@LHHH|$@IL9tHHH{H5Ld$@HsHmLLL$@LHHH|$@IL9tHH H5H=HHHH|$@IHL9tр$HtH$Ht|$xtH$HtHtHHHx뉀$HtH$HtcKYH|$@IHL9tH|$ IL9BHLooks like wrong scaffolding. PathId: , estimated gap length: Gap after fixing (was Overlap is not large enoughGap joiners offcandidate.d_ > int(g_.k())AWAVIAUATUSHHHdH%(H$1DD$D$HD$D$HIAVHHHC+PID$@I9D$HLPL@L$I9IAT$@HD$HHT$ LT$ LD$(H|$0HD$8LHD$PD$XH$HH$$$fo$Ƅ$x$`H$)$@H$hH$fo$H$p)$PnL$@LL$xtH$HtD$D$$tH$8HtD$D$ LC$H$H$A@։))1Ҁ$D$|$t$T$tH$Ht|$XtH|$xHtGD$9uD$9kH8IHtHz|$foD$EEH$dH3 %(HCH[]A\A]A^A_DH$ H$H$(H$$0$H$8HH$tƄ$x=ID$XH@H\@H8IHHL$@LI}H5L$IuM$$LL<$L$LHLH$LHH9tLHSAF;BD$HD$D$EfoD$$DEifHHt$HP8CH8HHtH!EH=H=Hxq=5LI}H5t$I}H5HIAvLH5HL<$IuM$$LL$LHLH$IGH9tLD$9D$8tH8HHzHaLI}H5&I$ I}H5HIID$ I9D$@LHLH5HIAvLL4$IuHLL$LHHH$LHH9tLif.HSAF;BH H5H=H={H=HNLI}H5L4$IuHLL$LHH1|HLHHÀ|$XtH|$xHtHH$H$HH9t부$xHtH$Ht$tH$8Ht$tH$Hsi|IDm:H$H$HHH9dAWAVIAUAT0USHHIHIHC ID$ HC(HID$(tH=@HsID$ID$Il$HA$HkHtfM0HHE HC HE(HHC(tH=tN@EHCHCI]LkHuHu3HmIHuHL[]A\A]A^A_D@f.LHLHC@@fDLLLID$*HLLHHAWAVIAUAT8USHHIHIHC ID$ HC(HID$(tH=@HC0HsID$ID$Il$ID$0HA$HkHtnM8HHE HC HE(HHC(tH=tU@HE0HC0EHCHCI]LkHuHu2HmIHuHL[]A\A]A^A_@@f.LHLHC@@fDLLLID$#HLLHHAWAVAUATUSHHL,MtfI]IIIHLC HHtHL@1IHLHuI9u0M9uHsLtHL[]A\A]A^A_fE1USHHHH1HHHsHHHtHHtH[]ÐH1[]AWAVAUATUSHHL$MtnI$IIIHLC HHtPL@1IHLHuI9u8M9uHCI9GuHsLtHL[]A\A]A^A_E1AVAUIATUHSHMHG8IHHIUHCHL-HILkHCIFHHC tH=uC@I;T$HLc(HS0HCv-HH]HH5P HE[]A\A]A^@@뺐HC(H@H9C0wH H5H=2H{ HLkHtHHvector::_M_range_insertH9WAWAVIAUATI)USIHLIHH_HGHIIHH)HH9BHL)IIL9MIM)L9tEHLHt%H0HBH2HpH@HrHHHH9uJ IFLL)IIH~RIHIGIGH{IIHCHHtHL$L $HL$L $IuM9CH}Ht H $H $H]IHHI\$H}I$H9HEtHtH=uC@H?HHH)HH)H9H9HBHH9HHHH$I>H$HHI9HHHt%H0HAH1HpH@HqHHHI9uHLH)HH|HHfDFHHI9t3HtH0H1HpHHqtH=uHFHI9uHI)INd?M~M9tLLL@HtHHH HHH@HJHHI9uIuLH)HMdM.M9t fDI}HtIM9uM.MtLI.MfI^H[]A\A]A^A_fDH:I9+HfDAHHI9t3HtHH HHHHJtH=uHAHI9uIFL)HL9H 0INtBHLDHt%HH@HHVHFHPHHHH9uHHIN6CH}Ht L$L$H]IHII\$H}I$H9HEtHtH=uC@H=@H!H11)H=HHNHHwjHH1Ht(u/HHHtWu HHf.HSHH(HKH9HcC t&HS(HrHH3HoC[Hs(9HvuHH3[SHHHH(HWH9t1H;Ht'H$HT$HCD$C HC(H@HHHHC[DHH@DP1D9t\ 2LKAAAAIcHHL9Ls1B4HcAHHL9L0rfAD9uց?8u%HcH{PH@8u?DPA9tHCS HHHC[EAf.ASD6HHCS AUATLgUSHHLHHdH%(HD$81H}I1IMH9t%Ht$8dH34%(HH[]A\A]@AM9HuHLh LLl$(IHLHL$HT$ HD$H$HD$LLIIuH90t:HE8H9C8t1\fE@8C@uCH8EH;AU9PuHGAHvH?LIM~+LHH D:~3HHH D8|1HHu1I9t@87f.HLf.H)HyLHUSHH_HtaHL DHCAHtHHC H L9wHCE1HuEIu1HI9HGIGH[]H_1H9_HtHHHUIHL HP H AUHGATUSHIHH9HHL HF L9 vIHGH9Ht.HHH@ L9 HzHEHEH[]A\A]@s~HO 1H9HtHHH@ L; s:H{HEHD@H(tH_ HHC H H9 w.HLH[]A\A]fHH1[]A\A]HH1[]A\A]Analyze unique edge ***not unique len ***Checking inconsistency***edge is unique.***AWAVAUATUSHHT$HdH%(H$1HHt$H!HD$0H@ H+BH9GPs2H$dH3 %(HĘ[]A\A]A^A_IH8HHHH$HH}H5Ht$H}L$HuHLL$LHIHH$IL9tHIo1H}(HD$H}Ht$`HHHD$`HD$HD$hHtHhH]L$LeDŽ$HDŽ$InHDŽ$I9H$H$Lk HLLHtLHLHI9HuL$IFI9VHD$pHD$PH$HD$(H$HD$8H$HD$XIt$ HT$E1HL$H|$PHD$xH+D$pHTH$LHD$@H$HD$HH8HHtHH$HK MIt$ LLHD$pHH$HtHHIFH9Hs HT$E1HL$H|$(H$H$H)HNHD$pLk E1Il$ H HLHHL$HHD$ HL$Ht$ E1LHH@Ll$8LH|$XH5H|$@IuHmL$LH[HH$H;|$HtH|$8H|$pHtLIIFI9fH8IHtH9.H8HHHH$HH}H5Ht$H}H5HIIHL$0LHq H+pH5HL$HuHLL$LHWHH$IL9tHH$HtH|$pHt1H$L^H8HHtHtH$HH}H5Ht$H}H5HIIHL$0LHq H+pH5HL$HuHLL$LH^HH8HHHH$HH}H5Ht$H}H5HIIHL$0LHq H+pH5HL$HuHLL$LHQHH$IL9tHH$HH}H5Ht$H}H5HM,$L$HuLL$LHdLH$IL9tHUH$IHL9tHH$LHHHHH$IHL9tHH$HtH|$pHtH$IHL9tHHT$@H$HHH9tH|$8mH0H0HtHH$IHL9tH[HHAVAUIATHUISHHMLAЄHtYLAքHLAքHHCAoEAMIEIUCKAE[]A\A]A^LAքu~HLAքHHCu:Ao$AL$ID$I$CKAD$[]A\A]A^oEMHUHECKE[]A\A]A^HHC9@HHCzAUATIUSH_H(dH%(HD$1HGIoHD$)$foHC0C(C@HLHkAՄufo$HD$dH3%(ED$Eu H([]A\A]H9AWLAVAUATUSHI9HG0IHHI)H)HLd70@HLMwՄtxK.HI~IvANHHHH~(LfHo@H@@uKH;HsM9MuH[]A\A]A^A_ÐHLAWAVAUATIUSHIHHH|$PKKL;Ls $LL$ t]H|$PHoEL$ EEC $L}LuMCMH[]A\A]A^A_H|$PLAoEAECD$ AEM}$MuAECAUH[]A\A]A^A_fDH|$PLLAo$AD$CD$ AD$M<$$$Mt$AD$CAd$H|$PLHu|oEECD$ EL}$LuEC]IfDAoEAECD$ AEM},$MuAECAmDAo$AD$CD$ AD$M<$4$Mt$AD$CAt$ATUSH_H0oIdH%(HD$(1)$oG)D$!DoH C0C@C8CPCXH|$PHLHk űD$fo$EEHD$(dH3%(D$Eu H0[]A\H9AVAULo ATUI9SHIIDH|$0LLI] tpLLCH{L)sHKHHH~%HH o@HH@H@uANMI~AvH9Iu[]A\A]A^@HLjXZfDHATUHSHHILU0IHMHEHtYE1LMHHHHHHtAWAVHAUATII)H)UIHH)SLIH)H IHHL9HLd$HL$8 Ld$M)M9fLHLML1'fDAoHH H I9;ULMLUHEHE}H{LEL[H}H{HCL}HCL]H}MtH=AoL{LCLKLSMaH=GAWzA?IHD$LRAW HD$zA IHD$LRHD$@AD_E_kMLLT$0LL$(LD$ T$HD$ASA D_E_ HD$T$LD$ LL$(LT$0MLT$0LLL$(LD$ T$HD$ASLT$0LL$(LD$ T$HD$DLHIHD$HIH MI)Ld$Ld$M)M9H\$LHHLII)MH Im1"Ao HH H L9;ULMLUHEHE}H{LEL[H}H{HCL}HCL]H}MtH=AoL{LCLKLSMaH=GAWzA?IHD$LRAW HD$zA IHD$LRHD$@AD_E_kMLLT$0LL$(LD$ T$HD$ASA D_E_ HD$T$LD$ LL$(LT$0MLT$0LLL$(LD$ T$HD$ASLT$0LL$(LD$ T$HD$DHI)HD$HIHIHD$8HH[]A\A]A^A_IHD$LRAW HD$DIHD$LRAW HD$DMLLT$0LL$(LD$ T$HD$ASA fDMLLT$0LL$(LD$ T$HD$ASA fDH@Lo HIHL)HLHHD$HL$@3Mt$A $ID$H{M|$A4$HsID$Ml$It$HsHCHCI|$I|$It$Ht L$L$H{ LkLsL{HtI H L;d$dHD$HH[HHHD]A\A]A^A_HH/M&AWJAVAUATMUSIHHH(HH$u6D'A9A9u HvH9w„3H([]A\A]A^A_@L9MI?MILL|$HL<HL$LHL$III)IHL$HLjHLLT$ LT$ HL$(1LD$H$D$ I LLHD$ LMHT$L+D$L)LH߈D$pH8[]A\A]A^A_fDIH4$I?IIMIIHLLT$HILT$H)HHHD$+fDEHCLuLmHEHEL}HEHCHCH}HSHCHEHHUtH{D#L{LsLkH\H([]A\A]A^A_HAVAUH)ATUHSD$0[]A\A]A^HHE1HAVIHHL,HLLLD4$XZMHLM)LHIDt$0[]A\A]A^HAUATH)USHHHHHyHBH<DHD#IvLM ILM~5LHL\ E:#~ t@IIN\E:#dLHuI9t D:eDcILM~9LHL\ E:#~$8IIN\E:#,LHuI9t D:eeDcILM~1LHL\ E:#~IIN\E:#LHuI9t D:e-kIM~4LHMA:+~ DIIOA:+LHuM9t A:(HH9HH)HHIHHHLH[]A\A]ILfL)IkLiZILf.L)IkLiILf.L)IkLiILf.L)MCLaHHH[]A\A]fDHHH[]A\A]fDH3HuH3HuH3HAWAVIAUATUSHHHdH%(H$1HD$HSHHT$ H|$HLl$ HD$0H|$0Ht$ILl$@LLt$@HD$pH|$pHt$0IL$qLL$HD$PILd$`yLD$PHt$pLLLd$`HDŽ$IL$H$LHHHHLjHIXZH$vH$HfDIvH|$0HtIvH|$HtL9LKIWuLcMILE IvLK MM~4LHI<D:~ DHHI<0D:HHuL9tE:|IL9uHH$dH3%(LHĸ[]A\A]A^A_@LHL$pLHHD$PHHL$HL$HL$HDŽ$LLd$PH$HH$LH$HLjH^_H$ILhHLf.H)LGLQLHHD$pHt$0ufDLHHD$0Ht$#fDHHT$H3HHD$HT$H$HXLd$PM@H|$PHHtH|$@vH|$0HtH|$ vH|$HtHH|$pHHuHHATL%USHHL#H}HHCHH{tHPHE HC HE(HC(E0C0HHH(HC[]A\HHL#HUSH@HHHHHHC8HHH5HHH8HCH8HC8HHHUSHHHxH@HHHHHC8HHH5HHH8HCH8HC8HHHAUATIUS@HHHdH%(HD$81LHHHHHHD$HD$ L%H$H(HD$(HD$HD$0HC8H|$HL#HCHH{tHPHD$ HuH{HC HD$(HC(D$0C0HHH8HCH8HC8HHH5HIL#HMHHLHIAWAVIAUATIUSIHHHGH)I)HHH HH9 HHT$H4$H4$HT$Lh HHIt>ID$H I$HBH9I $HJIL$HJHHBBIL$IH9HJ HHBH)IH|:0HI7fH HHJHHHJH@H@H H H9t"HtHJH HHH9uoBLHLl@IVH9~HN HFH)HHt20LH1H HHJHHH@H@HJH H H9t"HtHJH HHH9uoBHGM~HIM&M9t I<$ID$H9tI M9uM>MtLIMnInH[]A\A]A^A_f.HHoBAD$LHH9HuA 11AWAVAUATIUSIHHHHnL$HL$dH%(H$81LHAD$LLLt$$$L$H$PHHD$8I$LHDŽ$$hH$HHD$(IL$$hLLLd$0$$L$@LL$$LE1䉄$X1H$PvH$@HtH$vH$HtHEHDH$H$vH$HtH$`vH$PHtH$vH$HtH9H$H$H$H$Ƅ$ H$HtSH$HHHH $HyPHH$H$H9u-H9u(H9$uƄ$ DH$HH$H$H$H$H$H$HHD$ HH$HtuHHHtH{HH$vH$HtH$H|$HDŽ$HDŽ$HDŽ$HDŽ$HHDŽ$Ƅ$ H$HtuHHHtH{HHl$(Ht$HH\$8Ht$ HHLHD$pHD$xHDŽ$Hl$0HHH<$LH$HHH\$@HD$hH$IoHD$HD$pHD$HHCHD$VfHH|$QHH$H$H$H9u H9cH$H$H$HL$M$I$ ;L$H$L)uH$H$H)H9pHH$H\$hHA$$HH$Ht$xH;$HH$tRHFHH$H9HH$HFH$HHFH$HDŽ$Ƅ$H Ht$xH9tH$H$H$HnHHH;$Ƅ$DL$H$L)Mt.$ tAuIIHtH<$HHH$Ht#uHHHtH|$0HHH$@HtuHHHtI~HH$PHt#uHHHtH|$8HHH$Ht#uHHHtH|$(HHHT$pIEH|$pIUHT$xHD$pIEIUH$HD$xIEIUH$H$Ht#uHHHtH|$HHH$Ht#uHHHtH|$ HHH$8dH3 %(L]HH[]A\A]A^A_Ht$1LHT$hH$H$HLHH\$hH$@fo$F9fDH|$HLH$MfDHHLLD$XHL$PjH$H9$HL$PLD$XJH$H9$4jHHHUfDH)HMI H$H$H$H9$H$HD$h@H$LHHD$@$X $Ht$@HIH$$L$AD$vH$HtAo@HHHH|$@HHL$H$H9$HH$Ht"uHHHtH<$HHH$Ht#uHHHtH|$ HHHHH$HtuHHHtH|$HHHH$HtuHHHtH|$(HHHH|$pHtH$PHtuHHHtH|$8HHHH$@HtuHHHtI~HHH$HtèuHHHtH|$0HHHH$HtuHHHtH<$HHHLd$pH\$xLH9tH}HEH9tH Ld$xHH$vH$HtH$PvH$@HtH$vH$HtH$vH$HtH$`vH$PHtH$vH$HtH$H$HHHH$HtuHHHtH<$HH띾 LHHH$HQIHHH9H|$@HH!HH$H+#HHHH<$HHH$IHL9tHHBHWHlHHAUHGATUSHIHH9tL*L;n Hs;HGH9Ht#HL;h HvjHxHEHEH[]A\A]ÐvfHO 1H9HtHL;h Hs+H{HEHDH(t H_ HH9C r4HLH[]A\A]HH1[]A\A]HH1[]A\A]ReadCloudExtensionChooserCandidate: Max score: AWAVAUATUSHxHBL"HL$H|$(dH %(H$h1I9Ht$HHGHGHD$8H$fH$HD$p\$HD$HH$HD$@@HD$LHD$pHD$xHDŽ$Hh@LhxHEHxLpPHELHxHXHRHC H$HSPII9r+H{(t$Ht$xH;$EHtHHHt$xHHHELHxH8H9uH$Lt$xH\$pDŽ$HDŽ$HDŽ$LxHD$L$L$HhLhI9tI9tHE H9HI9uH$H=fH*HD$H@(HMfH*^D$XH8HHtH1QH8HHtH1Hl$hH\$`D$XT$HHD$`D$ T$hD$ rT$_T$HD$HHD$`D$ HpL$hL$0D$ u L$0f.wL$L;$LHtoA$oCAD$H H$H H9\$uLL$H$I9H$HD$H$HD$H$`HD$(H$pHD$0fDH I9;H8HHtH1tH|$H|$H5 HsH|$H5 HHD$ H|$ CHD$H|$(HmHpL$`LH1HH$`H;|$0tH|$H$HH{H5LeH$`HsHL$`LHwLH$`HH9tHH$HH{H5LeH$`HsHL$`LHnLH$`HH9tHH$HH{H5H$H+$HH{HHLeH$`HsHL$`LHyLH$`HH9tHH$HH{H5LeH$`HsHL$`LHrLH$`HH9tH!H$LH$LLH$0HtH8HHtHoH$H$IH$HIFH$IFtH$HH H9\$LH+$HHD$ HHH H9HD$HD$H|$H$HL$ HtooCAH$I9HHHtooAFH H I9uHO LH)HHHL I9LA tALLfHtooAFH H H9uI L)HMD HtHD$(LD$ HD$(LD$ H$HD$L$H$@H$BH8HHHH$HH{H5LeH$`HsHL$`LHiLH$`HH9tHSHD$ 0H$HH{H5H$H+$HH{HHLeH$`HsHL$`LHLH$`HH9tH1HH9U1H|$bHHL$BDHIHLH$`HIH9tHLH$HtH$HtH$HtHH$HtH|$`HtHH|$@HtH|$H$HHH$@LH$0HH^^HVH`HH|$lg94HHD$(H$`HH9IHLH$0HHTTIHH$`HIH9tLH HH$`HIH9tHLIHH$`HIH9FA}AMVIgBidirectionalPathAWAVAUATUSHHL$@dH%(H$1LIuHL$ IuLH$LHl$HHH\$Ld$x HHfD$@HD$@H\$hHD$D$@HHH$fD$`HD$`HD$(D$`H$(HH$ LfD$pHD$pHT$ HD$0D$pL$ LH$(Hf$H$LHD$8I9Hl$uM9LH|$LckH@0hf$uH|$8HH$ HH)H$(H9D$ HT$ LH)H|$0H\$XL$HH|$(HD$@HfD$PHD$HpHD$PHD$D$PHLf$H$HD$ H$ L$(IHL9ufDHI9tL+H@0hf$uH$ H$(HH9H1LH)H|$ H$HkHH|$HH|$HH|$H1HHDŽ$HDŽ$HDŽ$HDŽ$HDŽ$ HH$HHHH$HHHLH$DŽ$XvH$HtH|$LLH$PvH$@HtH$vH$HtH$vH$HtH$ IGH9tH$H$MuH9ufDH H9H8IHtHtξLHUHuLIuLM$$L$ LHLH$ IGH9tLH H9[fDH$H$H9t%H;HCH9tH H9uH$HtHH$dH3%(VH[]A\A]A^A_LHDŽ$(&@H$('H$HvH$HtH$vH$HtH$vH$HtH|$H$ IL9tHHHH|$ HHH|$HH|$HH|$HH|$0HH|$(HH|$8HHHLHH$PHH$@HHH|$/H$ IHL9tLHLongReadsExtensionChooser covering paths!!!SuccessCandidatessort res tr Long reads doesn't help =(We in Filter of LongReadsExtensionChooserChecking unique path_back for AWAVAUATUSH(Ht$PH|$xdH4%(H$1HqH91HL$8 IH8HHtH LH$DŽ$HDŽ$HDŽ$HD$(H$H$H$HD$8HH;Xu#r@LHLHD$8HH;XtQ8L#HkLt$(Hp L` Hh(H@0ILHuLHHD$8H;XuH$DŽ$HDŽ$ HDŽ$8HD$@H$H$(H$0HD$PHXXIG@I9GH2 HPH@H$H{H$H$HHHtHXLcH[H$HH$@DŽ$HHDŽ$PH$XH$`I9HD$0HDŽ$htALk H|$0HLHtH|$0LHHI9HuH8HHtH HD$0H$XHH4$H9H$HD$hH$HD$HH$HD$pfH$Hp IG@I;GHHHHPE1H|$hH$H9$wH$1HD$*fDH$H$HH)HH9<HL$HD$H$Hh HEXH+E8HHHHHE@H+EHHHHU0H+U HDD9~IGXI+G8HHHHIG@I+GHHHIW0I+W HDlMcH8IHtH E1LHLLHH8HHtHH$HL,H$ELp IcHl$PEI IuHD$ E1H\$XL|$`LHt$H\$ H|$LL)HH$LHPHHu`HH@HtH;P(vH@HuI9t=H;Q(r7H|$LHL}H$HH#0HF I+GH;EPs&IL9l$\H\$XL|$`H$H\$XL|$`H8HHtHH$Ht$L4$H|$H0IF HHp HD$H$fHHHIF H$H$Z(HD$(H$\$HHu4DHHRHtH;J(vHRHuHt$(HVH9tH;H(s"Ht$H|$(H$H$HD$Ht$H|$@X@0@0HtH<$HH$HD$0HH9H8HHtHDHD$(H$HH9! L$pL$IEM|$H$'f.HHHD$(HH9vH8HHtHtLH5 LHs(LH5HIC0LIt$LHmL$pLHOHH$pH;<$tL@H|$HH|$pH5I6HD$HL$pLHt$HpL$pH|$LH|H$pIFH9tH|$HcIGXH@H3L$I9TL1HHH9uH H9 H|mHHHHD$(LhL@Hto@ @0CHHL9uH99IHH I)HHLHHº?HH?HH)HI:LHHLL9L-LLIL9uLd$HLLt$pH5LH$LH@ H L$pIt$HmLL$pLHAHH$pIFH9tH|$HHH8IHtHIHI)ILH9\HD$PEH@f.CIvcHt$PU(NHYf.KDmHIf(LdCAMHUYf.v H|$@HHL9uHD$8HDŽ$L$HDŽ$HDŽ$HH;XH$ HtMHt$@HSHN@HH@HtH9P(sH@HuHD$@HH9tH;Q(r HLHD$8HH9XuH$H$HH)H[Ht$xHHFH$HHFtHH$PH|$0H$ H|$@H$H|$(H$dH34%(HD$xGH([]A\A]A^A_Ld$HLH|$pH5L$pIt$HmLL$pLHDHH$pIFH9tH|$HcH\$@H$ HHHDŽ$ HDŽ$8HH$(H$0H8HHtH H$H$gHIGXH@HHHHL$LI|$H5L$pIt$HLL$pLH2HH$pIFH9tLL$LI|$H5H$hI|$H5HL$pIt$HLL$pLH:HH$pIFH9tLaL$LI|$H5L$pIt$HLL$pLHMHH$pIFH9tL3L$LI|$H5L$pIt$HLL$pLHgHH$pM~L9tLjL$LI|$H5 IHI|$I)ILLH5HIHD$PL`Hf($$M>L$pIt$LL$pLHRLH$pIFH9tL11dH\$@H$ HHCHHHDŽ$ HDŽ$8H$(H$0H$pM~HL9tLH$HtHtHH$PH|$0H$ H|$@H|$(H$HHH$pM~HL9tLHH$pM~HL9tLHHH[H$pM~HL9tH|$HH$H""H$pIHL9aafHHHHHHHHTHH$pM~HL9tLtHSimple grow stepfound candidatesmore filteringfiltered candidatesAWAVAUATUSHHdH%(H$1HFXH+F8HHHHHF@H+FHHHHV0H+V HHu21H$dH3 %(bH[]A\A]A^A_DIHH8IHtHHI$LHHP8H8IHtH H8IHHLt$@LHuH+uHI~HHM}Ll$ IvLLL$ LH~LH|$ IL9tLfHEH+EHuJA$u?HC@H;CHHPHpHI$HxLfDH8IHHtwLt$@LI~H5M}Ll$ IvLLL$ LHLH|$ IL9tLI$HHHHPH$H}H$HEHD$HHD$HEHD$HD$HEtH<$HtH8HHtHH8IHHLt$@LHuH+uHI~HHLl$ IvI,$LLL$ LHHH|$ IL9tLZf.FfDLt$@LI~H5M}Ll$ IvLLL$ LH}LH|$ IL9tLd@Lt$@LI~H5M}Ll$ IvLLL$ LHzLH|$ IL9tL@Lt$@LI~H5Ll$ IvHLLL$ LHHH|$ IL9tLDHEHHpHPCWHCXH@H HLHH|$ IHL9tPaired-end extension chooserExcluded edgesPaired-end extension chooser helpedAWAVIAUATIUSHHH8dH%(H$(1H8HtHIHEH9ELd$PLD$XHD$`HD$xID$HD$hHD$pL|$HLIELLLLPH8HHtHH|$0MLLLH|$HT$0HD$8HL$@HD$0HD$8HHT$HD$@HD$HL$ tH|$0HtHT$HD$HH)HtLHCHD$ LHt$`HHCHH$(dH3%(]H8[]A\A]A^A_H8HHtHHT$HD$|HHL$LL<$IH5H$IwM$$HHD$IL$LHLH$LHH9tH<$H$HH$H$H5 HxH$Ht$xHxH5HH$H$HmHHT$HpL$LHHHD$H$HH9tH<$L$LL4$I~H5H$IvHmHHD$IL$LHHH$LHH9tH<$HT$H$HHH9tH<$H|$HtHt$`LHHHH<$HHHHHD$H$HH9uHHD$H$HH9tPathExtender, forward loop edge , loop starts @ Restored the pathJumped inside the loop, back loop edge AWAVAUATUSHH8H|$H~XdH%(H$(1HL$8HN@HH+E8HvHHT$0LD$ HLL$(H)HHHHHH]0H+] HHHSH9zHAHQLu Ll$`HD$HHD$@HT$@H$HD$PHD$HD$0HD$ LL{LLLHD$`HH@H9D$HHT$PHD$XucH4$H|$tQLcLLLHD$`HH@H9D$8HT$`HD$hu"Ht$LtIrL{LLLLHD$`HH@H9D$HHT$`HD$hHUXH+U8HE@H+EHHHHHHHHE0H+E HHH9H8IHHL$LI|$H5'Ht$8I|$H5HIHt$HLH5HIHLM>L$It$LL$LHLH$IL9tLHHHLLEXHD$`Hu@H}HLH+U8D DpHH)HHHHHHHE0H+E HHH)Ht"E1fHIL9uHu@H}HLEXH9*HFH;D$(HVHD$hHT$`HD$HL$ HHt$ HHH!H#T$@D+a LH@AD+B Dt$dD$hD$lHHT$(D$`Ht$@HT$HHLD$`HD$dD$lH8HHHL$LI|$H5L$It$HLL$LH!HH$IL9tLHH$(dH3%(H8[]A\A]A^A_HOHvHt$@L_HUXH+U8E1HE@H+EHHHHHHHHE0H+E HHH)H^fDHIL9uBf.IpHHt$ L/H$IHL9tLHHAWAVMAUATIUSIHILHdH%(H$1HF@H9FHHpL$ LH@L$(LLH4$HHD$I~LMILHHHHD$D$ HD$$D$,HL$ !LLHHL$HD$HOH8IHHt~Ll$PLI}H5I$Ld$0IuLHD$LL$0H|$LH5H|$0IL9tLIHH#$LHHH +B D$$D$,HƒdH)D$(L$ HL$fDHLHH$dH3%(/H[]A\A]A^A_ÐHFXH@H!DH8IHtHucLt$H4$HHT$D$ HD$$D$,LHLLHD$ HD$$D$,>Ll$PLI}H5M4$Ld$0IuLLL$0LH0LH|$0IL9tL!H|$0IHL9tLHHResolving short loop...Resolving short loop doneAVAUATUHSHHH~XHN@dH%(H$1HHvHHD$H$HD$HD$ HH+C8HD$HD$(HHHHHH)HHHS0H+S HHt+H9LHQHqLL$ H}LD$Hu*H$dH3%(H[]A\A]A^H8IHtHt$(t$(HLD$ LL$(HHL$HT$XZH8HHpHWLl$PLI}H5Ld$0IuHLLL$0LHHH|$0IL9tLfDHOHLl$PLI}H5M4$Ld$0IuLLL$0LHLH|$0IL9tLH|$0IHL9tLHHAWAVAUATE1USHhdH%(HD$X1HHxMHN H9N@IIaHIO@Iw IHD$@E1HHD$HD$0HD$HD$ HD$1fLI9IO I9O@1HE1AMGXIHLI+G8HHHHHH)HHIW0H)HHH9HQHqILL$LD$HL$HD$(H\$ HD$8H\$0HD$HH\$@|ILIw@IO H9M5H\$XdH3%(DuhHh[]A\A]A^A_fDHE1DIHH8ALAIO@IIw AWAVIAUATIUSHhHN dH%(HD$X1H9N@~HIN@Iv IHD$@E1HHD$HD$0HD$HD$ HD$.fDLI9IN I9N@)HE1AMFXI~HLI+F8HHHHHH)HHIV0H)HHH9HQHqI~LL$LD$HL$HD$(H\$ HD$8H\$0HD$HH\$@thILIv@IN H9#MSize() >= (int)path.Size()AWAVAUATUSHHH(dH%(H$1H8HtHIN HE@H9EH HPH@Ht$0H{HT$0HD$8HHSHtHPHBHZH\$(H9H$(H$pL$HD$H$HD$ fDH$HX H8IHtH/HSXH+S8HC@H+CHLe@L+eHHHHHIHHC0H+C HHHUXH+U8HHHJ"Le0L+e IIL9HA)?McfAIA&HLHtHSXH+S8HC@H+CHHHHHHHC0H+C HHDD$H8IHtHDt$IGH{0LSHLC@Hs8HSXLK EHD$NfDHSXHs8LC@LSHH{0LK HH)LHL)HHHH HL)HHAHMXH+M8H)HE@H+EHHHM)L)IHHHHHH HE0H+E HHHNHHJ H9)D9IcHHAHSXH+S8HC@H+CHHHHHHHC0H+C HHE4H8IHHLH|$H5H|$DH|$IwMmL$pLHLH$pH;|$ tLGH8IHHALIH5IDH|$IwM$$L$pLHLH$pH;|$ tLEH<$H9D$(H$E1H$dH3<%(D< H([]A\A]A^A_ÐH8IHtHtfDLIH5H|$IwM$$L$pLHLH$pH;|$ tLYHEXH+E8Ld$@HM@H+MHIcHH|$HLHHHHHHM0H+M HHL1HALD;t$TH8H$HtHH8H$HtHHH8H$HtHHEXH+E8LHM0H+M HHHHHHHE@H+EHHHHT$HLLH8IHtHHH8IHtHHUXH+U8HE@H+EHHHHHHHE0H+E HHA9H8IHtHHSXH+S8HC@H+CHHMXH+M8HHHHHHHC0H+C HHHHHHU@H+UHDHH HU0H+U HH9HCXH+C8HS@H+SHHM@H+MHHHHHHHHS0H+S HHHUXH+U8DHHHHHM0H+M HH9(H H5H=&fDLLIH5t$IH|$IwM$$L$pLH LH$pH;|$ tLHEXH@HH H5H=L$LIH5L$pIwM$$LL4$L$pLHLH$pLHH9tL#L$LIH5 IDH$IwHHD$H$pHH$L$pH|$LHH$H$pHH9tLxL$LIH5H$pIwM$$HH$L$pLH!LH$H$pHH9tLL$LIH5H$IwHHD$H$pHH$L$pH|$LHH$H$pHH9tLL$LIH5H$IwHHD$H$pHH$L$pH|$LHH$H$pHH9tLL$LIH5HsXH+s8IHC@H+CHHHHHHHC0H+C HHDH$pIwM$$HH$L$pLH%LH$H$pHH9tLQL$LIH5IDH5 HH$HuXH+u8HE@H+EHH<$HHHHHHE0H+E HHH$pIwM$$HH$L$pLH#LH$H$pHH9tLHEXH+E8HU@H+UHHHHHHHU0H+U HHA9H H5H=$H$H$pHHH9tLHHH$H$pHH9uHHHD$H$pHH9uHLHWrong position in IS cycleadd cycleAUATUSHHHNXH+N8dH%(H$1HF@H+FHHHHHHH HF0H+F HHH9rZH8HHt"HfH$dH3%(H[]A\A]0HT$H4$H4$HHT$HHFXH+F8HN@H+NHHHHHHHN0H+N HH0HHIHߺHHߺLH8HHtHuH@Ld$0LI|$H5L+H\$It$HLL$LH7LH|$HH9tLHLd$0LI|$H5H+H\$It$HLL$LH0HH|$HH9tL H|$HHH9tLHHHL0HHH0Hdetect cycleChecking IS cycleRemoved IS cycleAWAVAUATUSHHHdH%(H$1H8HtHIH0HHH8IHtH HHAH8IHtHUAtIcHH f.1H$dH3 %(Hĸ[]A\A]A^A_DLl$ LI}H5M4$IuILL $LHLH<$IL9tLLl$ LI}H5M4$IuILL $LHLH<$IL9tL|Ll$ LI}H5M<$IuILL $LHLH<$IL9tL3HLHH<$IHL9tcov map size: in existing loopun ch enabled edge in short loopPrev edge in short loopMaking stepLast edge in the path: Conjugate: Made stepPath size: Edge in short loopAWAVIAUATUSHHHdH%(H$1H8HtHIrH}0HtZH8HHtHE1H$dH3 %(D H[]A\A]A^A_fH8IHtHHHHH$HD$uLCXHK@H{HLH+C8HHHHHH)HHHS0H+S HH @t(}NHt}0H8IHtHOH8IHtHH8IHtHHELHHPAH8IHtHH8IHtH@HHLCXHK@H{HLH+C8HHHHHH)HHHS0H+S HHt<@}H9fHQHqH<$@}WHyH8IHHLd$0LI|$H5MuLl$It$LLL$LHLH|$IL9tL @Ld$0LI|$H5HI|$Hp(M}Ll$It$LLL$LHLH|$IL9tL@}H9tHQHqH<$}b@HEHP0fLd$0LI|$H5H1I|$H@0Hx(@M}Ll$It$LLL$LHLH|$IL9tLvDLd$0LI|$H5Ll$It$HLLL$LHHH|$IL9tLLd$0LI|$H5M}Ll$It$LLL$LH LH|$IL9tL3f.Ld$0LI|$H5HC@H;CHJHpI|$M}Ll$It$LLL$LH LH|$IL9tLLd$0LI|$H5M}Ll$It$LLL$LHLH|$IL9tLfLd$0LI|$H5 HCXH+C8I|$Hs@H+sHHHHHH0Hs0H+s HHM}Ll$It$LLL$LHLH|$IL9tLH@HtLCXH{HHK@H8IHtH{HHHA@IHH|HCXH@HDLd$0LI|$H5 HS@H;SHt~HH#BI|$Hp@M}Ll$It$LLL$LHLH|$IL9tL:HCXHPHn@HHK@H{HLCXH8IHHLd$0LI|$H5MuLl$It$LLL$LHLH|$IL9tL-H8IHHLd$0LI|$H5MuLl$It$LLL$LHLPIHHLd$0LI|$H5MuLl$It$LLL$LHLHLHH|$IHL9t/srv/scratch/marinovg/spades-cloudspades-paper/assembler/ext/include/btree/btree.hnode->parent()->child(node->position()) == nodeposition >= node->count()position < node->count()HLDOA8A@tjD9uRI@8AHL;Ht%HH9uopH9HujHȉWHH9tHD9AMcK8HuH8tHGHDLDOHH H5H=H H5H=H H5H=/srv/scratch/marinovg/spades-cloudspades-paper/assembler/ext/include/btree/safe_btree.hgeneration_ > 0AVAUIATUISH_HHPdH%(HD$H1fID$H4I|$0H;GHHDP1D9t` 2ML$AAAAIcHHL9Ls46fDB4HcAHHL;L0AD9uҁ?8u-HcHwPH@8DPA9tID$ AT$(HIcD$(HHID$ H8L!HHHHu HIT$8HHH9A|$HHHL!A|$@Hy8LI@tfHLL!L@8HH@HH9H$Ht$LD$HL$V9HIT$8bfEAf.ASD~@HrLI@A|$@YHH9txWPI9|HHI$Lp LLt$8Lt$HT$0HD$(HD$LHD$ Hl$LHII>H98I|$HHcPHHHH:L!H1HIT$8AD$@AHt$Ht6fDHD$HdH3%(uMHP[]A\A]A^H HBH)HIT$8vA~9xHHHzHrH H5H=}USHHHdH%(HD$81HHh HHl$(HHHHT$ HL$HD$H$HD$HH{HHUH9t)HC8HHD$8dH3%(uHH[]Du9puAWAVAAUATIUSHn HHdH%(H$1HF HtH@H|$IHD$(Ll$HD$L{HD$ D$0Hl$8HD$HL#C@DsHHCHD$HCHD$ HCHD$(HC D$0C(HD$8HC0Ll$xLl$pH$H$HD$pLHDŽ$H$LLHD$HT$H H9H{;LHcPHHHHHH#H1HHS8C@HHIH|$@HD$XHT$`Hl$hHD$@HD$PL|$HHD$@HLcPƃDHCXHD$HHC`HD$PHChHD$XHCpD$`CxHD$hHH$LHkXH$H$HD$pHDŽ$L|$xLHII4$H90H{XHHcPHHHHHH#H1HH{PHƃH$dH3%(Hĸ[]A\A]A^A_fJ9HsAL$9HOHH8@H,HfHHRH H5H=}AWAVIAUATLn(USHMLHH$D$Ht$HT$D$$LoGD$dH%(H$81HH(Ht$HHHHxH=LhLkHK HH=H8H=Hp HC(Hx @HHLk8HCHHCPHCXHC0HCpC`?HChHCpHC@HǃHǃHǃHHH$HǃHǃHǃLDHHD$HHHI$HID$HH H=u@HEHǃHǃHǃHHEHHt@1|$L$HsH1@|$@HH|$LLl$`IHfH$H$HWH9tGHHt9HD$PHT$XH$D$X$H$H@HH$H$H$HWH9tGH~Ht9HD$@HT$HH$D$H$H$H@HH$H$H9$u$9$?$H$HII!IP8HH!@t HH8H!HHHH!HRH!HRH!HHƒu HHHu,@I@@H|$LHL$`HD$hD$pH$Lx LLHD$`HD$pLt$hHD$xH$L$Ht$xH$H9HOHc$HHL$`HoD$hHGH9tAHHt3HD$0HT$8HD$xD$8$H$H@HHD$`H$H$HWH9tGHHt9HD$ HT$(H$D$($H$H@HH$HD$xH9$*LH$4@HUHEHǃHǃHǃHHHHBHxH$Lx LLH$HD$xL$HD$`HD$pLt$hLI|$II?H98H$H;$$J@8$ <$8$(H$8dH3%(HH[]A\A]A^A_HHL$@DH1D9tT 2AAAAIcHHL;Dv-B4HcAHHL9D0rnAD9uց?8u)HcHfDPH@8CDHA9tI|$XH$$EAfASD6@HHL$@DH1D9tT 2AAAAIcHHL;Dv-B4HcAHHL9D0rnAD9uց?8u)HcHfDPH@8]DHA9tI|$H$$EAfASD6@$9$9HHHHT$`HfHHLD$pDH1D9tT 2AAAAIcHHL;Dv-B4HcAHHL;D0wfAD9uց?8u)HcHfDPH@8@DHA9tLHD$x$WEAfDASD>@HHL$@DH1D9tT 2AAAAIcHHL9Ds-B4HcAHHL9D0rfAD9uց?8u%HcHfDPH@8ufDHA9tI|$H$$EADASD>HGPA9xgHPH+HH@HEHǃHǃHǃHHEHHH=HsHHHtHHtHHtHH!uneven_depth_average coverage of long edges: Added coverage based unique edge AWAVAUATUSHHdH%(H$1XH\$PHu1Ll$ E1IHfHCPHD$HD$t$fDHt$HH$HMH}PH0HAL!$HV8L!HHR II)ML9LwUHvfH+QH*fH*^Hf(fH*YHD$XD$D$HD$PLp LHLHT$@HL$(HD$8Lt$HHD$ HD$0LH{IIH9tBHH$@HV II)ML9Lcf.AV9PufHHfHH H*XHfHH H*Xf.HD$HL9s2H$dH3%(HĨ[]A\A]A^A_fH|$dfH*D$|$^|$H8IHtHHuL$1HIMunf.HJ8Hz@HL!HB IL+FIv:RfYT$H*HH+Bx_fH*^f.woHHsPHH$HuHHL!‼$eHxj@HfHH H*X^f.vHE0Hu(Ht2HHH@HtH;x(vH@HuH9t H;z(RHL$ L} HL$ H|$(HLHL$$H$HL$H0L!HF8L!LHHP@H@8HT$(HD$ H8IHHLH5!L$H$JH0L!Hv@LH5HHD$H$HUH0L!怼$Ht Hv8L!HHp H+rH|$H5HHD$H$HMHL!‼$t HB8L!H‹BfHH*HB H+AfH*^H|$IL$IuLHD$L$H|$LHH$IL9tL@@}XH H5H=fL$LI}H5 I}D$L$IuM$$LL$LHLH$IL9tL@Ht$fHHH H*XDH2HpHfHH H*X^H$IHL9tLHHLooking for unique edgesUnique edges are foundcoverage based uniqueness startedAWAVAUATIUSHdH%(H$x1H8HtHH0H\$0I4$1IHHHL!Hp8HP@Lts|$pHT$hHL!HH@8HR@M|$ HH$HT$L|$pHD$hHL!HA8L!HLHP@H@8HT$H$HD$0Lx LHHHT$ HL$HD$L|$(H$HD$HH{IIH9tGHHD$hLkPHLuF|$pHD$hH0HPf.AO9HuLHtH8HHtHA|$XH8HHtHH$xdH3%(HĈ[]A\A]A^A_fH~HR:H$HH}H5L+H$HuHL$LHLH$HH9tHIfH$HH}H5L#H$HuHL$LHLH$HH9tHfLXH$HH}H5L+H$HuHL$LHLH$HH9tHH$HIH9tHLIHtCATIUSHHsLHs@HkH{0HHHu[]A\ExtensionChooser2015ExtensionChooser2015 created/srv/scratch/marinovg/spades-cloudspades-paper/assembler/src/common/modules/path_extend/scaffolder2015/extension_chooser2015.hppAWAVIAUATMUSHHHEHdH%(H$1HD$ $Ld$0L$HT$HD$HD$LHHH{HkLHH|$8HHC 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HIT$8HHH9A|$HHHL!A|$@Hy8LI@tfHLL!L@8HH@HH9H$Ht$LD$HL$V9HIT$8bfEAf.ASD~@HrLI@A|$@YHH9txWPI9|HHI$Lp LLt$8Lt$HT$0HD$(HD$LHD$ Hl$LHII>H98I|$HHcPHHHH:L!H1HIT$8AD$@AHt$Ht6fDHD$HdH3%(uMHP[]A\A]A^H HBH)HIT$8vA~9xHHHzHrH H5H=}tails: Long edgesAWAVIAUATUSHHH_dH%(H$81H\$H HD$(HH H@ HtH@H|$@HHD$XHl$HHD$@L$ HD$PD$`L$H\$hHD$HƄ$Ƅ$H$HD$@H$HD$HH$HD$PH$HD$XH$D$`$HD$hH$LH$@H$(H$8HDŽ$ HDŽ$0H$HLI|$HHuH90H$I|$HcPHHHHHH#H1HLH$Ƅ$HD$pHD$8HD$0HHD$ H$HD$IEH$fHH|$ H$H$HD$pHDŽ$Hl$xH$HD$HƄ$`Ƅ$hH$ HD$pH$(HD$xH$0H$H$8H$H$@$$HH$H$PLt$H$H$HDŽ$HDŽ$H$LH$LH<$II6H90rH$(BH<$HcPHHHHH#2HK1HLH$XƄ$`Mt$LH<$HD$HT$H2H90[$H$IOHHyHH!@HA8HH!HR H)H9T$(sJIHD$8LBHQ@H$ HH$(I9IGLHxH@@HD$0H$Lp LLH$@H$8L$HHDŽ$ HDŽ$0H$(LI|$II6H90LH$&fDHI H)H9L$(]IHD$8HRLAJ9HH$HH HHL$HL$H|$H$H$HDŽ$HDŽ$H$H$H|$LHD$HT$H H9$H$H;$X$@8$`$8$hH8IHtHRH8HHtHH|$0fH*D$0H|$8fH*L$8H$8dH3%(^HH[]A\A]A^A_fDAN9HfDAN9H>fDJ9HLLA\fHD$8fHƒHH H*XRDHD$0fHƒHH H*XDu9p kHH$L$pHLD$0H5H L1H 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HcH$(H@oD)$0HD$Hh f.$TL$H$XMSL9t_HLtQI1Ht-o HXHItAPu HXHH$p$xIL$XH$(L_L95HdLH$pKH1Ht/0@LXMMt@AIu LXLIH$@$HL$(H9H$(HL_L9QL/M(L$8Lf.DPE1DA9tIAHcHRL;Lv)A 0HcAH IL;LA9uA?8u*McJfDD@H@8DPE9tAUH$@D$HIXHH/ Iu IXIL9fMcL$(K@oD)$0K@H$HTH H!HI@H9w"L$I!Mx@L9zH9H$(LOL9t_HLtQH1Ht-HXHItAPu HXHH$@$HIL$(8t$HV$HH9|HH$@$HH$PHE1Ht9u]HX HXDAH9HwtHHcH$(HRoD)$0pAEFDH9DAHwuD9uHH$(5DH$@H$pH9($x9$HVfDL/M L$8LDPE1DA9tIAHcHRL9Ls)A 0HcAH IL;LA9uA?8u*McJfDD@H@8sDPE9tAUH$@D$HIXHHIu IXII9uMcL$(K@oDH$p)$0AEFDM+M{L$hLDH1ED9tKB6HcHRL9Ds,D4DDLcAO4vN;D9uց?8u)HcHfDpH@8DHA9tAUH$p$xIXHIZE@u IXII9(HcL$XHvoD)$`&ADf.AwA@H$@Lc$HLML$8LАDXE1DA9AT HcHRL9Ds,B .HcAH IL;DD9uׁ?8u*HcHpH@8hDXA9tA:H$@$HIXMXARL9jHcL$(HvoD)$0UAEnA9DBLH$L)LQH$p$xMRAUH$PMH$P1AL/L_H$@$HMAUvLH$P1AL/L_H$@$HMAU`LkH$PLLO$H1H$@MA:L9AR9fH9$@u$H9$x:H H5H=EAAIDE1I9H$PA9D9IH$pL$(sA9IMcL$(I!IIH}9xHD$0H$(dH3%(H@(MH8[]A\A]A^A_D9HH$(Ht$(H|$HD$PIIHHHE1HL)fH*HL|$0Dl$ path_extend::ExtendersGenerator::MakeSimpleExtensionChooser(size_t) conststd::shared_ptr path_extend::ExtendersGenerator::MakePEExtender(size_t, bool) constpath_extend::SimpleCoverageExtensionChooser::SimpleCoverageExtensionChooser(const debruijn_graph::SSCoverageStorage&, const Graph&, double, double)path_extend::CoverageAwareIdealInfoProvider::CoverageAwareIdealInfoProvider(const Graph&, const std::shared_ptr&, size_t)std::shared_ptr path_extend::ExtendersGenerator::MakeRNAScaffoldingExtender(size_t) constpath_extend::PathCoverWeightCounter::PathCoverWeightCounter(const Graph&, const std::shared_ptr&, bool, double, std::shared_ptr)void path_extend::LongReadsUniqueEdgeAnalyzer::FindAllUniqueCoverageEdges()debruijn_graph::EdgeId path_extend::scaffold_graph::EdgeGetter::GetEdgeFromScaffoldVertex(const path_extend::scaffold_graph::ScaffoldVertex&)barcode_index::BarcodeIndexInfoExtractor::const_intersection_iterator::reference barcode_index::BarcodeIndexInfoExtractor::const_intersection_iterator::operator*() [with barcode_entry_t = barcode_index::FrameEdgeEntry; barcode_index::BarcodeIndexInfoExtractor::const_intersection_iterator::reference = barcode_index::BarcodeIndexInfoExtractor::IntersectionData]void btree::btree_iterator::increment_slow() [with Node = const btree::btree_node >, std::less > >, std::allocator > >, 256> >; Reference = const restricted::pure_pointer >&; Pointer = const restricted::pure_pointer >*]btree::safe_btree_iterator::reference btree::safe_btree_iterator::operator*() const [with Tree = const btree::safe_btree >, std::less > >, std::allocator > >, 256> >; Iterator = btree::btree_iterator >, std::less > >, std::allocator > >, 256> >, const restricted::pure_pointer >&, const restricted::pure_pointer >*>; btree::safe_btree_iterator::reference = const restricted::pure_pointer >&]static const Config& config_common::config::get() [with Config = debruijn_graph::config::debruijn_config]const Block& boost::dynamic_bitset::m_highest_block() const [with Block = long unsigned int; Allocator = std::allocator]boost::dynamic_bitset::~dynamic_bitset() [with Block = long unsigned int; Allocator = std::allocator]int path_extend::InsertSizeLoopDetector::RemoveCycle(path_extend::BidirectionalPath&) constbool path_extend::InsertSizeLoopDetector::InExistingLoop(const path_extend::BidirectionalPath&)path_extend::Gap path_extend::ScaffoldingPathExtender::NormalizeGap(path_extend::Gap) constdouble path_extend::HammingGapAnalyzer::ScoreGap(const Sequence&, const Sequence&) constvirtual path_extend::GapDescription path_extend::HammingGapAnalyzer::FixGap(const GapDescription&) constsize_t Range::size() constvoid Range::shift(int)debruijn_graph::OverlapInfo::OverlapInfo(const Range&, const Range&, size_t)Range::Range(size_t, size_t)Sequence Sequence::Subseq(size_t, size_t) constvirtual path_extend::GapDescription path_extend::LAGapAnalyzer::FixGap(const GapDescription&) constvoid omnigraph::GapDescription::set_estimated_dist(int) [with Graph = debruijn_graph::DeBruijnGraph]virtual path_extend::GapDescription path_extend::CompositeGapAnalyzer::FixGap(const GapDescription&) constboost::optional path_extend::ScaffoldingPathExtender::GetGap(const path_extend::BidirectionalPath&, const path_extend::EdgeWithDistance&, bool, const EdgeId&)path_extend::BidirectionalPath path_extend::BidirectionalPath::SubPath(size_t, size_t) constbool path_extend::InsertSizeLoopDetector::CheckCycledNonIS(const path_extend::BidirectionalPath&) constvirtual size_t path_extend::CoverageLoopEstimator::EstimateSimpleCycleCount(const path_extend::BidirectionalPath&, path_extend::EdgeId, path_extend::EdgeId) constvirtual size_t path_extend::PairedInfoLoopEstimator::EstimateSimpleCycleCount(const path_extend::BidirectionalPath&, path_extend::EdgeId, path_extend::EdgeId) constvirtual path_extend::ExtensionChooser::EdgeContainer path_extend::JointExtensionChooser::Filter(const path_extend::BidirectionalPath&, const EdgeContainer&) constpath_extend::EdgeId path_extend::SimpleCoverageExtensionChooser::GetOtherEdgeAtSplit(debruijn_graph::VertexId, path_extend::EdgeId) constpath_extend::ExtensionChooser::EdgeContainer path_extend::SimpleCoverageExtensionChooser::Filter(const path_extend::BidirectionalPath&, const EdgeContainer&, bool) constpath_extend::ExtensionChooser::EdgeContainer path_extend::ExcludingExtensionChooser::FindFilteredEdges(const path_extend::BidirectionalPath&, const EdgeContainer&, const std::set&) constvirtual std::vector path_extend::CoverageAwareIdealInfoProvider::FindCoveredEdges(const path_extend::BidirectionalPath&, path_extend::EdgeId, int) constvirtual void path_extend::IdealBasedExtensionChooser::ExcludeEdges(const path_extend::BidirectionalPath&, const EdgeContainer&, std::set&) constomnigraph::GraphCore::EdgeId omnigraph::GraphCore::GetUniqueIncomingEdge(omnigraph::GraphCore::VertexId) const [with DataMaster = debruijn_graph::DeBruijnDataMaster; omnigraph::GraphCore::EdgeId = restricted::pure_pointer >; omnigraph::GraphCore::VertexId = restricted::pure_pointer >]virtual double path_extend::CoverageAwareIdealInfoProvider::EstimatePathCoverage(const path_extend::BidirectionalPath&) constvoid path_extend::BidirectionalPath::PushFront(debruijn_graph::EdgeId, path_extend::Gap)void path_extend::BidirectionalPath::PushBack(debruijn_graph::EdgeId, const path_extend::Gap&)bool restricted::pure_pointer::operator==(const restricted::pure_pointer&) const [with T = omnigraph::PairedVertex]void btree::btree_iterator::increment_slow() [with Node = const btree::btree_node >, omnigraph::de::StrongWeakPtr > >, std::less > >, std::allocator >, omnigraph::de::StrongWeakPtr > > > >, 256> >; Reference = const std::pair >, omnigraph::de::StrongWeakPtr > > >&; Pointer = const std::pair >, omnigraph::de::StrongWeakPtr > > >*]size_t path_extend::PairedInfoLibraryWithIndex::FindJumpEdges(path_extend::EdgeId, std::set > >&, int, int, size_t) const [with Index = const omnigraph::de::PairedIndex&; size_t = long unsigned int; path_extend::EdgeId = restricted::pure_pointer >]void path_extend::PairedInfoLibraryWithIndex::CountDistances(path_extend::EdgeId, path_extend::EdgeId, std::vector&, std::vector&) const [with Index = const omnigraph::de::PairedIndex&; path_extend::EdgeId = restricted::pure_pointer >]double path_extend::PairedInfoLibraryWithIndex::CountPairedInfo(path_extend::EdgeId, path_extend::EdgeId, int, bool) const [with Index = const omnigraph::de::PairedIndex&; path_extend::EdgeId = restricted::pure_pointer >]btree::safe_btree_iterator::pointer btree::safe_btree_iterator::operator->() const [with Tree = const btree::safe_btree >, omnigraph::de::StrongWeakPtr > >, std::less > >, std::allocator >, omnigraph::de::StrongWeakPtr > > > >, 256> >; Iterator = btree::btree_iterator >, omnigraph::de::StrongWeakPtr > >, std::less > >, std::allocator >, omnigraph::de::StrongWeakPtr > > > >, 256> >, const std::pair >, omnigraph::de::StrongWeakPtr > > >&, const std::pair >, omnigraph::de::StrongWeakPtr > > >*>; btree::safe_btree_iterator::pointer = const std::pair >, omnigraph::de::StrongWeakPtr > > >*]btree::safe_btree_iterator::pointer btree::safe_btree_iterator::operator->() const [with Tree = const btree::safe_btree >, omnigraph::de::NoLockingAdapter >, omnigraph::de::StrongWeakPtr > >, std::less > >, std::allocator >, omnigraph::de::StrongWeakPtr > > > >, 256> >, std::less > >, std::allocator >, omnigraph::de::NoLockingAdapter >, omnigraph::de::StrongWeakPtr > >, std::less > >, std::allocator >, omnigraph::de::StrongWeakPtr > > > >, 256> > > >, 256> >; Iterator = btree::btree_iterator >, omnigraph::de::NoLockingAdapter >, omnigraph::de::StrongWeakPtr > >, std::less > >, std::allocator >, omnigraph::de::StrongWeakPtr > > > >, 256> >, std::less > >, std::allocator >, omnigraph::de::NoLockingAdapter >, omnigraph::de::StrongWeakPtr > >, std::less > >, std::allocator >, omnigraph::de::StrongWeakPtr > > > >, 256> > > >, 256> >, const std::pair >, omnigraph::de::NoLockingAdapter >, omnigraph::de::StrongWeakPtr > >, std::less > >, std::allocator >, omnigraph::de::StrongWeakPtr > > > >, 256> > >&, const std::pair >, omnigraph::de::NoLockingAdapter >, omnigraph::de::StrongWeakPtr > >, std::less > >, std::allocator >, omnigraph::de::StrongWeakPtr > > > >, 256> > >*>; btree::safe_btree_iterator::pointer = const std::pair >, omnigraph::de::NoLockingAdapter >, omnigraph::de::StrongWeakPtr > >, std::less > >, std::allocator >, omnigraph::de::StrongWeakPtr > > > >, 256> > >*]double path_extend::PairedInfoLibraryWithIndex::CountPairedInfo(path_extend::EdgeId, path_extend::EdgeId, int, int) const [with Index = const omnigraph::de::PairedIndex&; path_extend::EdgeId = restricted::pure_pointer >]void btree::btree_iterator::increment_slow() [with Node = const btree::btree_node >, omnigraph::de::StrongWeakPtr > >, std::less > >, std::allocator >, omnigraph::de::StrongWeakPtr > > > >, 256> >; Reference = const std::pair >, omnigraph::de::StrongWeakPtr > > >&; Pointer = const std::pair >, omnigraph::de::StrongWeakPtr > > >*]size_t path_extend::PairedInfoLibraryWithIndex::FindJumpEdges(path_extend::EdgeId, std::set > >&, int, int, size_t) const [with Index = const omnigraph::de::PairedIndex&; size_t = long unsigned int; path_extend::EdgeId = restricted::pure_pointer >]void path_extend::PairedInfoLibraryWithIndex::CountDistances(path_extend::EdgeId, path_extend::EdgeId, std::vector&, std::vector&) const [with Index = const omnigraph::de::PairedIndex&; path_extend::EdgeId = restricted::pure_pointer >]double path_extend::PairedInfoLibraryWithIndex::CountPairedInfo(path_extend::EdgeId, path_extend::EdgeId, int, bool) const [with Index = const omnigraph::de::PairedIndex&; path_extend::EdgeId = restricted::pure_pointer >]double path_extend::PairedInfoLibraryWithIndex::CountPairedInfo(path_extend::EdgeId, path_extend::EdgeId, int, int) const [with Index = const omnigraph::de::PairedIndex&; path_extend::EdgeId = restricted::pure_pointer >]bool restricted::pure_pointer::operator==(const restricted::pure_pointer&) const [with T = omnigraph::PairedEdge]size_t path_extend::BidirectionalPath::Length() 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D;|0HH9uHH$dH3%(H[]A\A]A^A_DH$HH}H5I$Ld$`HuLHD$LL$`H|$LHEH|$`IL9tHH$H$HPH$H(H$HH$HEpH9tHH}PH$HHHH@HHHH$H@HHHH$H@HHHDŽ$H$*@H$HH}H5M<$Ld$`HuLLL$`LHCLH|$`IL9tHH$H$HPH$H(H$HH$HEpH9tHH}PH$HHHH@HHHH$H@HHHH$H@HHHDŽ$H$yH$HHt$H}H5HHD$H|$DH5HHD$IEXI+E8Iu@I+uHH|$HHHHH0Iu0I+u HHI$Ld$`HuLHD$LL$`H|$LHGH|$`IL9tHH$H$HPH$H(H$HH$HEpH9tHH}PH$HHHH@HHHH$H@HHHH$H@HHHDŽ$H$IuxHI+HLHHH?IHHH)H HIL#l$ IvHIM H+N))PH8IHtH0HHH|$LH#HH@HP8H|$@HD$HH)HHHHCtHHSH)H$HH}H5#HsH+3HH}HHH5HI$Ld$`HuLHD$LL$`H|$LHNH|$`IL9tHJH$HH}H5 Ht$H}H5HIHLHpH5LM<$Ld$`HuLLL$`LHSLH|$`IL9tHHHHL$H!H9J@H#B8I9H H5H=HHH5H|$`IIL9tMHH;HtLIH|$@IHtIHHHH|$`IHL9tbasic_string::_M_construct null not valid/srv/scratch/marinovg/spades-cloudspades-paper/assembler/src/common/modules/path_extend/scaffolder2015/extension_chooser2015.cpp failed absolute weight threshold passed absolute weight threshold failed relative weight threshold next unique edges found, there are found, doing backwards check /srv/scratch/marinovg/spades-cloudspades-paper/assembler/src/common/assembly_graph/core/order_and_law.hppHSHHH HtH[HtH=tkt2[CPSuHHPC PS fDHHPC uHH[H@UHSHHHH HtHkHtH=tmt=HH߾X[]fEPUuHEHPE PU DHEHPE uHEHP=== Stack Trace ===AWAVH5AUATH=USHXdH%(H$H1HHH@HHr{87sCH=HHHHÉIHōCL%L=Ml*DsCH=HHL9H]HtbHH=HHI$H@IH{8uHH H@0L9tHwI$HxLw LH$HdH3%(uKHX[]A\A]A^A_HHH H@0H9HHSHHHHHCXH9tHH{8H[HSHHHHHCXH9tHH{8HH߾h[Ht3ATIUSHHsLHkHHHu[]A\@Ht3ATIUSHHsLHkHHHu[]A\@Ht3ATIUSHHsLHkHHHu[]A\@USHHHOHHtHHC(HH[]H9t1B 9E @SHH_HtRL Dr HFH9C(wHCE1HtHHK L9vHCAHuEHuI9v;1H[H_1H;_HtHHt$Ht$HH HHLI9wr HFH9C(rHH1[USHHHOHHtHHC(HH[]H9tHE H9B wӿr1HB(H9E(@ATUISH`HoEH@ HE HtsUHC@S8HU(HSHHU0HSPHS8HPHE8HE HE8HCXHEHE(HE0Hs LHtDHLHH[]A\HC8C8HC@HCXHCHHCPHs@H{0HD$HHD$H1[]A\AUHGATUSHIHH9L*L9n HvGH9]HHt'HL;h HxHHEHDHH[]A\A]fDrHBH9F(wr H1H9] tbHL;h r w{Hp(I9t$spH{HڹHEHEH[H]A\A]@H(tBH_ HC H9w r3HC(H9Bv)H1HH[]A\A]DrIt$H9p(.HLH[]A\A]USHH_HtQD@HCAHtHËK A9|HCE1HuEIu1HA9HOIOH[]H_1H9_HtHHIDEH HAUHGATUSHIHH9tD*D;n H};HGH9Ht#HD;h H~hHxHEHEH[]A\A]Ð~^HO 1H9HtHD;h H})H{HEHDH(t H_ 9C |&HLH[]A\A]HH1[]A\A]HH1[]A\A]AWAVAUATUSHHHHuH?IHI)H)HHH IH9LHT$H}HuLxHT$IIMt oAEH9t8LHHtoHHH9uHGHH)HHM| H9t5HLfDHtoHHH9uHH)HM|HtLeL}LuH[]A\A]A^A_f.HIHH9HuAE1E1 AWAVHAUATIUSIHHMD$H?LI)H)HHH H IH9LHT$I<$MD$HXHT$IIMtoHBAEIEH9tIHGHHLH)HHIDHHtoHJHKHKHH9uH0L9tf.f.wJH9pw9rBHD9~:f.@Ho@@HHH f.vHfDHLHHpD@AUATIUSHHH?dH%(HD$1H9HGH9HGKIHf.wcfDf.w"LKL;Ows;w|Ff.H$HHjLCM9$XLZtzI}KGf.vLKsHLSLCH)HHH~,HHH @o@H@HuOLM9$LWLOwuHD$dH3%(uH[]A\A]f.stHBUSLHH?HHH9HfDHyML?HIBIIM)MMI)AAAKLf.9f.w#MYL9_%D_wAiD9~ AE[f(ILHLH)H9HGAoAD_GauHHH?HHH9HLHH)HPL$L\$ LL$(HDT$0H?HHH9dDf.~L;IwbrvQD9}nfDHLH)CoASHWCHH?HHH9HH};HHLHH)Af.vQ멐EYHLH)ILYLIDQ[]fHTLHHHH)HLAH)ËyHCoA{CHExtensionChooser2015 candidate edgesedge weight Edge other removedunique_edges_.IsUnique(from)filtering startedlast unique found of themFor edge unique next edge ptr_.get() == rhs.ptr_.get()y<!><<< < [< < ;<;;B<";;<:;9<>:!<!>%>%=(>(=*=+<.=/<1=1>16:292<4>:p-i   Ub>HtCATIUSHHsLHs@HkH{0HHHu[]A\UHSHHHH@HwHHGHHHk`HtH=tXmH{ HHHtHkHtH=tJmHH߾[]@EPUuHEHPE PU ADEPUuHEHPE PU IDHEHPE FHEHP7@HEHPE LHEHP=UHSHHHH@HwHHGHHHk`HtH=tHmH{ HHHtH[HtH=t:kH[]ËEPUuHEHPE PU ADCPSuHHPC PS IfDHEHPE VHEHPG@HHPC ]HHH@H[]H=HH=HH5Hbool restricted::pure_pointer::operator==(const restricted::pure_pointer&) const [with T = omnigraph::PairedEdge]path_extend::ExtensionChooser::EdgeContainer path_extend::ExtensionChooser2015::FindNextUniqueEdge(path_extend::EdgeId) constN11path_extend16ExtensionChooserEN11path_extend27ScaffoldingExtensionChooserEN11path_extend20ExtensionChooser2015E?|=0C?GCC: (Ubuntu 7.5.0-3ubuntu1~18.04) 7.5.0zRx 00BAD G0f  AABH dHo I G(AHG o IAG LBBI B(H0A8L?n 8A0A(B BBBD DBBD A(%  EIBB s  ABBH HQ\4HgxAHt,:GDA dABE,:GDA dABE,:GDA dABE($KAAS V DAH (PAD Y AA CF(|^AAS V DAH <BAD L0  FABA K CABl.BFA A(J0L (D ABBG R (A DBBE d (I ABBF U(G ABB(XAAD T AAD lBFA A(J0D (A ABBB N (G ABBF D (F ABBA D(F ABBHaBBB B(A0A8JP 8A0A(B BBBK H@BBL B(D0A8JP 8A0A(B BBBI ;zPLRx 8$|AC I.i. 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LH$HdH3%(uKHX[]A\A]A^A_HHH H@0H9HHHHFHHGtH=u @D@USHHHvHHHFHGHuH{HE(E0C0HC(HE8HC8H[]UIHHHAUATSIHLPLXt&)`)p)U)])e)m)u)}dH%(H(1HFHHDž Dž0H)HELl$HH0IH LAHcID$HHI$wCHu}AUAT$H(dH3<%(I\$Lu\He[A\A]]f.H1LHI$IT$HLHHI$@HtAUATUSHLgHI9ImH@I9tlHk HtH=tymHkHtH=uEPUuHEHPE PU uHEHPH@I9ufI]HHH[]A\A]EPUuHEHPE PU hHEHPYHEHPE HEHPi@HEHPE f.H[]A\A]AUATUSHLgHI9tnIDmtyHI9tPHkHtH=u݋EPUuHEHPE PU uHEHHPI9u@I]Ht7HH[]A\A]DHEHPE f.H[]A\A]H=SHtot+[fGPWuHPC PS HPC uHH[H@SHH HtH{Ht [[PredicateScaffoldGraphFilterProcessed edges out of Check result: CheckingEdge addedSuccessScore threshold: Score: -> TrueFalseBaseScaffoldGraphConstructorTerminal only: Vertex vertex.GetType() == EdgeConnected with Constructing from conditions conditions.Checking conditionAdded verticesNumber of threads: Scaffolding distance: vertices out of _Map_base::atDistanceCounted(vertex) vertices/srv/scratch/marinovg/spades-cloudspades-paper/assembler/src/common/modules/path_extend/scaffolder2015/scaffold_graph_constructor.cppScoreFunctionScaffoldGraphConstructor/srv/scratch/marinovg/spades-cloudspades-paper/assembler/src/common/modules/path_extend/scaffolder2015/scaffold_vertex.hppUniqueScaffoldGraphConstructor "D|'3** )2      9             , <  `.j ,    *    &10r!1f* J4X S  Hfl,v+uh~m;?Q9,!     *  09/7T_\} C/g/ - -    ' "/u0   ; ) ):)00f0t3           )%9     L  I-]          Beb27    7 !  ,ON$*W8 mHHHHt HSHHHHtH߾([SHHH{Ht [@[ATUISHH HdH%(HD$1Md$HsHHHHLH|$HHtHT$dH3%(Hu H []A\H|$HHtHAUATUSHHwHHHHdH%(HD$81t HT$8dH3%(|HH[]A\A]ÐHm Ld$HLH]Hl$ LHHLhHHAH|$(HtD$D$H|$HtD$D$pH|$(HHtH|$HtHScaffoldForwardNeighbourItetator/srv/scratch/marinovg/spades-cloudspades-paper/assembler/src/common/modules/path_extend/read_cloud_path_extend/scaffold_graph_dijkstra.hppBefore increment, AWAVAUATIUSHHdH%(H$1H8HtH1HH8IHtH1Ll$Hl$ Hs8HHC8LHpLLI|$HH|$HtHHC8@LH$dH3 %(H[]A\A]A^A_@L$Ll$LHC8LHpLI~HH5HHD$HK8Hl$ HHqHH|$HH|$(HtH|$HtIL|$`IvLHD$LL$`H|$LH<1H|$`IL9tL@L$LI~H5L|$`IvHmLLL$`LH;1HH|$`IL9tLHLHH|$`IHL9tHH|$HtH|$(HHtAUATHUSIHLg(H_ HI9u mH@I9ttHk HtH=mHkHtH=uEPUuHEHPE PU uHEHPH@I9ufDI] HtHI}HIEHH[]A\A]EPUdHEHPE PU HHEHP9HEHPE HEHPM@HEHPE f.H[]A\A]USHHHHtfDHHHuHEH}1H0HH}HEHEH9tH[]fH[]HATUSHHGHHGIHHH5HCHHHCHC HHC@HC(C0?HC8HCHCPHC@CPHCXHC`HChHHCpLcxHHHǃHǃHǃǃHǃHHHǃH}HEH]Ht[]A\fD[]A\H}HHtHAUATHUSIHLo(H_ HI9u mH@I9ttHk HtH=m HkHtH=uEPUuHEHPE PU uHEHPH@I9ufDI\$ HtHI|$HI$HtHL@[]A\A]DEPUTHEHPE PU 8HEHP)HEHPE HEHP=@HEHPE HtCATIUSHHsLH{(HkHtHHHu[]A\fDHtCATIUSHHsLH{(HkHtHHHu[]A\fDAUATIUSHǰHHwI$I$It$XI|$HI\$ Hu mHLMt}Hk0L+HtH=mHk HtH=uEPUuHEHPE PU uHEHPHLMuDID$I|$1I@HI|$ID$ID$L9H[]A\A]@EPUFHEHPE PU *HEHPHEHPE HEHP/@HEHPE fH[]A\A]AWAVAUATLoUSIHHH_Huf.HSHtHL{ HLuHSHuI9\$t9HILx HHLuHH1[]A\A]A^A_@IM9Aub0Hx HHLLHDID$(HHغ[]A\A]A^A_IyLXIv HDHt3ATIUSHHsLHkHHHu[]A\@Ht3ATIUSHHsLHkHHHu[]A\@Ht3ATIUSHHsLHkHHHu[]A\@Ht3ATIUSHHsLHkHHHu[]A\@HHHH!H9thH6HHH!H9thHHHH HHHHHH 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rhs.ptr_.get()AUATUSHHH,HttH]ILC(%DHHtpL@(1HHLHwH9uXL9uHCI9D$uI$HCIL!L!H9tI$L!L#kL9u&HH[]A\A]H1[H]A\A]H H5H=AWAVIAUAT0USHHIHoC IHs@ IEHAEIEImHkHtLM0oE H@ EHCHCI\$LcHuHu HmIHuHL[]A\A]A^A_fLHLHC@LLLIEhHLLHHUSHHHvHHHFHGHuH{HE(Hu0H{0HC(Hu@H{@HEPEXCXHCPHE`HC`H[]ATUHSHHLfHHFHGHI9t(MtH=t|AD$H{HtLcLe H{ HEI9HCt(MtH=t/AD$H{ HtLc Hu(H{(H[]A\ÐAD$HuAD$HuH1Ht(u/HHHtWu HHf.HSHH(HKH9HcC t&HS(HrHH3HoC[Hs(9HvuHH3[SHHHH(HWH9t1H;Ht'H$HT$HCD$C HC(H@HHHHC[DHH@DP1D9t\ 2LKAAAAIcHHL9Ls1B4HcAHHL9L0rfAD9uց?8u%HcH{PH@8u?DPA9tHCS HHHC[EAf.ASD6HHCS HFAWAVAUATHUSH?HHHH9XL\$XLd$hIL$H\$pLL$`LD$PM!M!aD@L,I)@J4oo@Fo@ F Hh0Hn0HiHH?HHH9HH}oHHH)HL9uLhM9@M9uHh0LpLh Hl$HhL!I9tkH H5H=HoD$PH$oD$`HF0FoD$pF H[]A\A]A^A_DL9t+@f.HH)H4M!M9YL9|$USHH_HtQLFHCAHtHHK(L9wHCE1HuEIu1HI9HGIGH[]fH_1H9_HtHHILEHH(HAUHGATUSHIHH9tLjL9n(Hv:HGH9Ht#HL9h(HsjHxHEHEH[]A\A]sfHO 1H9HtHL;h(Hs,H{HEHDH(tH_ HC(H9Bw3HLH[]A\A]fDHH1[]A\A]HH1[]A\A]AUATIUSHPIHHIELHS HoHHC8HC0C HCHHC@HtFHHMt HHE(HH[]A\A]DH9t1HB(H9C(@HHD$HD$H[]A\A]AWAVIAUATIUSH8dH%(HD$(1HBII?IIL9 HHNAEHDH IDoH)L9Ho@Bo@ B H@0HB0HLBK IHqI)NHH)HHI9uIXLXL9AL9sMX0MPIXLhL` L\$LX0I!H\$IX L\$LXI!M9H H5H=DAuIWHH?HHH9tlHL$'HL$$$$$$$H@HD$(dH3%(H8[]A\A]A^A_HL6HHH)HHH)HooB@oB @ HR0HP0H@I9t A&fLT$I!I!M9L\$L9\$AAUATUSHHHHHIH9L,LL1HILU0HMHEHt[E1LMfHHHHHHtH$1)$o@)$o@H)HHm۶m۶mHH)$$$H$$$$$H@2f.H|$H|$0H5L$H5H Iغ 1LH$H$H|$0H5 HHD$PHt$H|$PH$IEH9tHD$LM6HpL$LHu1LH$IL9tH|$DH|$H|$0H5IuHD$L$LHt$HpL$H|$LHs1H$IL9tH|$+H|$H|$0H5HD$MuL$LHpL$LHw1LH$IL9tH|$H$HH}H5L$LD$@H5H 1LH$H$H}H5HH$IEH9tHuLHL$LH~1HH$IL9tHjH\$HHT$pHHC4HUHEH)HHHH|$HH$IHL9tHHHH$IHL9tStarting dijkstra run from vertex Priority queue initialized. Starting search already counted. Proceeding to next queue entry.Check for processing vertex failed. Proceeding to the next queue entry.Finished dijkstra run from vertex Dijkstra iteration started with distance fetched from queueDistance to vertex is found to be at distance from vertex UHAWAVAUATISHH8HdH%(HE1H8HtH1I% HHsxHCXHDž HDž(HDž0HHChLHHHCpHHCxHǃHHHHHHHHHǃHǃHHHHHHH(H;0HǃHǃHHHHCPHDž@HDž`HDžpHHHHPHHXHh? Ht.fo@foPFfo`F HpHF0H8H(oFHHH 1)oF)oF)HFH)HHHm۶m۶mHHHH@H HHHDHHRHtH9J(sHRHuH9HtH;H(s$HHHHHHH@8H@HHP0HP@H8IHtH1Z H@L HHHH(H9 {PH8IHtH1H HHHLo(oGLg0)HHGLw HHHHDHHRHtH9J(sHRHuH9HtH;H(s+HHHHHH HLp8Lh@L`HHp0H(HHPH)H8H(H8IHtH1HCxHHtNHHfHH@HtH;P(vH@HuH;Ht H;Q(HHHfoH)IH8HtH1HCXHH;CHHCXwC`H8IHH1LLHH5IvLM$$L LH1LH8IH>fDAD$H/srv/scratch/marinovg/spades-cloudspades-paper/assembler/ext/include/btree/btree.hnode->parent()->child(node->position()) == nodeposition >= node->count()position < node->count()HLDOA8A@tjD9uRI@8AHL;Ht%HH9uopH9HujHȉWHH9tHD9AMcK8HuH8tHGHDLDOHH H5H=H H5H=H H5H=/srv/scratch/marinovg/spades-cloudspades-paper/assembler/ext/include/btree/safe_btree.hgeneration_ > 0AWAVIAUATIUSHoHHHdH%(HD$81I*fHLH!Hp@HH8H9HIV8I~HHcPHHHH2H!HHHHu HIV8HHH9tUA~Ht)HH!A~@HH8L@@eHzLH9oHD$8dH3%(HH[]A\A]A^A_fA~@uHH9txWPI9|HHILx LLHT$ HD$L|$(H$HD$Ll$LHII?H98I~HHcPHHHH:H!H1Hu|IV8AF@|@HH!H9H H5H=fDH HBH)HhDA9xNH|HHpH H5H=}H=HH=HH5Hdistance_t omnigraph::Dijkstra::GetDistance(omnigraph::Dijkstra::VertexId) const [with Graph = path_extend::scaffold_graph::ScaffoldGraph; DijkstraSettings = omnigraph::ComposedDijkstraSettings, omnigraph::StartPredicateProcessChecker, omnigraph::TrivialScaffoldPutChecker, omnigraph::ForwardNeighbourIteratorFactory >; distance_t = long unsigned int; omnigraph::Dijkstra::VertexId = path_extend::scaffold_graph::ScaffoldVertex]distance_t omnigraph::Dijkstra::GetDistance(omnigraph::Dijkstra::VertexId) const [with Graph = debruijn_graph::DeBruijnGraph; DijkstraSettings = omnigraph::ComposedDijkstraSettings, omnigraph::BoundProcessChecker, omnigraph::UniquePutChecker, omnigraph::ForwardNeighbourIteratorFactory >; distance_t = long unsigned int; omnigraph::Dijkstra::VertexId = restricted::pure_pointer >]bool restricted::pure_pointer::operator==(const restricted::pure_pointer&) const [with T = omnigraph::PairedVertex]debruijn_graph::EdgeId path_extend::scaffold_graph::EdgeGetter::GetEdgeFromScaffoldVertex(const path_extend::scaffold_graph::ScaffoldVertex&)bool restricted::pure_pointer::operator==(const restricted::pure_pointer&) const [with T = omnigraph::PairedEdge]void btree::btree_iterator::increment_slow() [with Node = const btree::btree_node >, std::less > >, std::allocator > >, 256> >; 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V 9T !T           2=== Stack Trace ===AWAVH5AUATH=USHXdH%(H$H1HHH@HHr{87sCH=HHHHÉIHōCL%L=Ml*DsCH=HHL9H]HtbHH=HHI$H@IH{8uHH H@0L9tHwI$HxLw LH$HdH3%(uKHX[]A\A]A^A_HHH H@0H9HUSHHH_ HtH=t\kH]HtH=tkt_H[]CPSuHHPC PS AfDCPSuHHPC PS IfDHHPC uHHH@H[]fDHHPC ;HHP-UIHHHATSIHL`Lht#)p)M)U)])e)m)u)}dH%(H81HFH HDž Dž$0H)HEH\$H(H@HHH0AIT$LHI$HcHH8dH3<%(Lu He[A\]%lu%fID: basic_string::append\n Weight: \n Lib#: \n Len: \n Cov: yellowwhiteredbluegreenmagentaorangecyanJZ{            4jO  \ $ \ t922..     <]i     ;  4!%pH=SHtot+[fGPWuHPC PS HPC uHH[H@AWAVAUATUSHH(H^L6dH%(H$1HG(HHD$H=bCHLt$H\$CHt$HuIHHHLt$@H\$HtH=WCL$HT$@LHu HHpHHHLt$0H\$8tH="CLl$pHT$0LHuHHLt$ H\$(H@tH=CHl$PHT$ HL$Ht$PHT$XL$IFI~HH$Ht$pHT$xIF8I~(H$HH$H$IFXI~HH$HH|$PHH9tH|$(HtH|$pIL9tH|$8HtH$IL9tH|$HHtH|$LH$IFXH9tH$IF8H9tH$IL9tH|$HtHtHH$dH3%(H([]A\A]A^A_fCHHHD$HFHHD$@C6CCHLt$HD$>HH|$HtHtHHHH|$HHtHH|$8HtH$IL9tHH|$(HtH|$pIL9tIH|$PHH9tLIH$IL9tH$IIF8H9tH$HIFXH9tH$IF8H9tH$IL9AWAVAUATUSHHH(H>HvdH%(H$1HEH$H$HH$H=<HU@H$HU HH$tBHM(HU8HE0LcH$H$$H$H$H$ H=>@HU HEHH$H$HBtHM(HU8E0H$Ll$0H$LH$$HLHD$LLIHELcHD$@HEHD$HHEHHD$PH=@HU HEHHD$XHT$`HBtHE(E0LD$pHD$hHE8Hl$ HHD$xHD$@HHD$HLHsIHHHH$H$@H$H$HH$HH$PH=@H$H$HH$XH$`HBtH$$H$$pH$hH$HH$xH$@H$HHsHHHH$H$H$H$H$HH$H=@H$H$HH$H$ HBtH$$L$$0H$(H$LH$8H$HD$HL$LHDŽ$Ƅ$HDŽ$ID$ I|$Ƅ$L$L$H$ID$@H$I|$0HH$IL9tH$ HtH$HtH$HEH9tH$`HtH$PHtLk8H5L$LLLH{8H5Lk8H5L$LLLH{8H5HHEHHrH$H{8H$H$H5HIH5LH$H$LH5HH$HEH9tH{8H5HHEHHrH$H{8H$H$H5HIH5LH$H$LH5HH$HH9tH[8H5HHH@HH}8uCHHH$ID$@H9tH$I L9tH|$(HtH|$`HtH|$PHtH|$8HtH$HtH$HtH$HtH$HtH$dH3%(H([]A\A]A^A_f.@HEH$HE HH$HPtH}HuHED@H$H$H$HH$ K@Bf.@HEH$HE HH$@f@H$H$XH$HH$` @f.@HEHD$XHE HHD$` @HHEH H@0H9HfDHUH$HU HH$pH=^HH$H$XH$HH$`-H=HHEHD$XHE HHD$`/H=HfDH$H$H$HH$ H=.HlHEH$HE HH$H=&HHH$ID$@H9tH$I L9tH|$(HtH|$H|$8HtH|$H$HH$HHH9tjHHHHHH<$pHH|$HH$H9tH$HID$@H9tH$I L9tH$IL9tHAUATIUSHHHsLHk(LcHtH=t$mt]HLMuH[]A\A]fEPUuHEHPE PU uHEHPfDfDHEHPE HHwHHGHHxHHwHHHSHwHHHGH߾8[fDSHHXHHHsH{HH߾8[AWAVAUATLoUSIHHH_Hu f.HSHtHL{ HLuHSHuI9\$t9HILx HHLuHH1[]A\A]A^A_@IM9A0HHEHC HEHHC(tH=uB@LLHDID$(HHغ[]A\A]A^A_Ia@fL(Iv HD]HHtKATIUSHHsLH{(HC8HkH9tHHHu[]A\f.HwAUATLoUSHMHH_HuQIH[HtH{ HtH[HuM9t&It$ HuHL[]A\A]HL[]A\A]/srv/scratch/marinovg/spades-cloudspades-paper/assembler/src/common/visualization/printing_parameter_storage.hppdefault_value_USHH~HHHHUH9t'HSHHHp0HP8HHH[]}8t*HCHHHu@HUHHHH[]fD}8uH H5H=B@f.USHHHHXHHH{HSH9t(HUHp0HHUHP8HHH[]{8t*Hs@HSHHEHHEHHH[]D{8uH H5H=BAUATLoUSHMHH_HuQIH[HtH{ HtH[HuM9t&It$ HuHL[]A\A]HL[]A\A]HAUATIUSHHHsLH{0HC@LcH9tHk(HtH=t"mt[HLMuH[]A\A]ËEPUuHEHPE PU uHEHPfDfDHEHPE UHSHoHHHH88HGtH@HCPH9tHsH{HHh[]HSHHGH8@HtHHHCXH9tHs H{H߾h[SHHXHHHCH8{@HtH{HHCXH9tHs H{H߾h[HSHHH88HGtH@HCPH9tHsH{[@HSHHGH8@HtHHHCXH9tHs H{[@SHHXHHHCH8{@HtH{HHCXH9tHs H{[USHH_HtQL@HCAHtHHK I9rHCE1HuEIu1HI9HGIGH[]fH_1H9_HtHHILEHH HAUHGATUSHIHH9tL*L;n Hs;HGH9Ht#HL;h HvjHxHEHEH[]A\A]ÐvfHO 1H9HtHL;h Hs+H{HEHDH(t H_ HH9C r4HLH[]A\A]HH1[]A\A]HH1[]A\A]HAWAVAUATLwUL::GetValue(ElementId) const [with ElementId = path_extend::scaffold_graph::ScaffoldVertex; Value = std::__cxx11::basic_string]N13visualization14StreamRecorderEN13visualization13GraphRecorderINS_10BaseVertexImEENS_8BaseEdgeImEEEEN13visualization19SingleGraphRecorderImEEN13visualization16DotGraphRecorderImEEN13visualization22DotSingleGraphRecorderImEEN13visualization13graph_labeler12GraphLabelerIN11path_extend14scaffold_graph13ScaffoldGraphEEEN11path_extend14scaffold_graph20ScaffoldGraphLabelerEN13visualization26printing_parameter_storage16ParameterStorageIN11path_extend14scaffold_graph13ScaffoldGraph12ScaffoldEdgeENSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEEEN13visualization13graph_colorer14ElementColorerIN11path_extend14scaffold_graph13ScaffoldGraph12ScaffoldEdgeEEEN11path_extend14scaffold_graph19ScaffoldEdgeColorerEN13visualization26printing_parameter_storage16ParameterStorageIN11path_extend14scaffold_graph14ScaffoldVertexENSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEEEN13visualization13graph_colorer14ElementColorerIN11path_extend14scaffold_graph14ScaffoldVertexEEEN11path_extend14scaffold_graph24ScaffoldVertexSetColorerEN13visualization13graph_printer12GraphPrinterIN11path_extend14scaffold_graph13ScaffoldGraphEEEN13visualization13vertex_linker12VertexLinkerIN11path_extend14scaffold_graph13ScaffoldGraphEEEN13visualization26printing_parameter_storage19MapParameterStorageIN11path_extend14scaffold_graph14ScaffoldVertexENSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEEEN13visualization13vertex_linker15MapVertexLinkerIN11path_extend14scaffold_graph13ScaffoldGraphEEEN13visualization13vertex_linker16EmptyGraphLinkerIN11path_extend14scaffold_graph13ScaffoldGraphEEEN13visualization13graph_printer18SingleGraphPrinterIN11path_extend14scaffold_graph13ScaffoldGraphEEEGCC: (Ubuntu 7.5.0-3ubuntu1~18.04) 7.5.0zRx 0DXl    0BAD G0f  AABH ,Am B ZL $`1AEJ OLA(AAP v DAK (AAK N DAH zPLRx L$BBF B(H0A8Jp 8A0A(B BBBJ Pt BBF B(H0A8J 8A0A(B BBBE ,AANPY AAA PBBE B(H0A8G# 8A0A(B BBBH L<BBI B(H0A8L?n 8A0A(B BBBD 4AAG | AAI v AAH $AL C A PBBI B(D0A8J 8A0A(B BBBA @bIM J |PpWBBB B(A0A8J 8A0A(B BBBJ P_ BBB B(A0A8Mt 8A0A(B BBBK HKBD A(G0~ (A ABBC xH0Th*H]`UBBB B(E0A8J@t 8F0A(B BBBE ] 8I0A(B BBBA ,RGDA vABK, H@~BBE A(J0K (D ABBH D(D ABBPBBB B(D0A8M: 8A0A(B BBBB 4AAQ l DAD d DAG 4AAG ~ DAD e DAF HP~BBE A(J0K (D ABBH D(D ABB0mAAQ m DAK WDA PBBI B(D0A8J 8A0A(B BBBB L8KBD A(G0P (A ABBA xH0$WAHK tIA<Ho<HoIH|PpBBE B(H0A8Q 8A0A(B BBBA (X AAD U AAC l BFA A(J0D (A ABBB P (G ABBL D (F ABBI D(F ABBL$FBB B(E0E8DP 8A0A(B BBBE 8TBAH G  AABA   0Aj   CA} PAJ QSTUVWXYZ[]_acQQdd1fgiklnoprstvwxz{|~Jd@VTPed0c!- 79BwRK sfw X \&a,g2o8v>kCkHk Mk RkWk\kakfklk"rk$xk'~oo o ooo"o&wwww{nL#      !"#$%&'()*+,-./0123456789:;<=>?@ABCDEFGHIJKLMNOP"U"V"WD"Wv"X"Y"Y"Z"Z"[ 5KS"] "_ "a ) "W`     QtT 0C T Q`   "_@ "g    7 O "i "l !    % "p  "t "xY"|&+"~m"~"(Qp(F"b"W_"_ .}"K"!@"*"Ua""R" " ["~ Qh """~QmcQ QW3""Wh!xQ "< "@<&!"`I!Q@p$"!0^"!@"!F#!H#!h#"t$"-%]%"$%%&&"$&&&&&'" ^'"00'"X'"a)("C("P )!"/)!U){)!F)!*!*=*!k**!'*!*!-+!8L+v+!_+!<,!6v,!,!f-!.!o.!(/!5;/!t/!0!0!b,1!(1!:1!2!_q2!2!_73!(3!F4!(4!bX5!85!c%6!6!e6!^7q7!7!P\8!@8! $9!@]9!@9! 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HHH[fHSHHG8HHHHGHHtHP HHH[UHSHoHHHGHHHHtHP HHHCHH8[]HSHHHHGHHtHP HHHH߾8[SH_HHHtH=tkt3[fCPSuHHPC PS fDHHPC uHH[H@SH_HHHtH=tkt3[fCPSuHHPC PS fDHHPC uHH[H@USHHHH_HHtH=tkt;HHX[]CPSuHHPC PS fDHHPC uHHPUSHHHH_HHtH=tkt;HH8[]CPSuHHPC PS fDHHPC uHHP=== Stack Trace ===AWAVH5AUATH=USHXdH%(H$H1HHH@HHr{87sCH=HHHHÉIHōCL%L=Ml*DsCH=HHL9H]HtbHH=HHI$H@IH{8uHH H@0L9tHwI$HxLw LH$HdH3%(uKHX[]A\A]A^A_HHH H@0H9H/srv/scratch/marinovg/spades-cloudspades-paper/assembler/src/common/assembly_graph/core/order_and_law.hppinteresting_edge_set_.find(e)!= interesting_edge_set_.end()/srv/scratch/marinovg/spades-cloudspades-paper/assembler/src/common/modules/path_extend/scaffolder2015/connection_condition2015.cpp not applicable for connection conditionis called unique but presents in path twice! first edge ptr_.get() == rhs.ptr_.get()Verification of expression '' failed in function ''. In file '' on line . Message ' edge '.DistanceCounted(vertex)ConnectionConditionfiltering incorrectnessSomething went wrong:: Edge path Got cov paths ***not unique len ***Before prefiltering After prefiltering/srv/scratch/marinovg/spades-cloudspades-paper/assembler/src/common/assembly_graph/paths/bidirectional_path.hppgap_len_[0].gap == 0HHLHH+HHHH)HI~$LHHLIIMIL)HKIE EHH~$HBHHIHHI4HH)HH֋HGxHH+HHHH~(HB?HHIHHHHH)HHHHfDH|$H|$HLHH+HHH5HHHH;IIIIfDHHHH_H H5H=ATUISHHH^dH%(HD$1HHHHP(H$HtHHPH<$HtHP ID$H}HEAD$ HE ID$HEtHP HH]tHHPHHP HD$dH3%(u3H[]A\HFHGF G HFHGHHtHP HHH<$HHtHP HHP HHHu 4F~ATUHS@L%HHHHHC8H}HL#HCHH{tHPHE HuH{HC HE(HC(E0C0HHH8HCH8HC8HHXH[]A\HHL#H߾@HHHfATUL%SHHxH@HHHHHC8H}HL#HCHH{tHPHE HuH{HC HE(HC(E0C0HHH8HCH8HC8HHXH[]A\HHL#H߾@HHHOV1Path Length Weight , ()[], final: #, edge (length), gap info, total length, total length from startAWAVAUATUSHdH %(H$1HO@H9O Ht$ IH5HLH LH5HH5L1HC H9C@t HHLt$LH5HH5LfLZ(H5HH5ALH5LHCXH+C8HHHHHC@H+CHHHHS0H+S HHHD$P1H$HD$`HD$ HD$0HD$HD$@HD$(kfHHHK8HHH)HHH<$LpL H|$ LH5HIHLI!It$ I+wH5HL<$H|$IwLHT$8Ht$0LH5HIHHH+HHH]HH?HHHH)HHD(DpH5Dx@ LD$DLH5HIDLH5HIDLH5 HIt$LH5HIHKxHH+HHHwHH?9HHHH)HHH0LH5HIHC H9C@HHKxHHH+HHHHH?IH4IIM)J4H;WHC H9C@HHKxHHH+HHHHHH?HHH)H HH+HLH5HH|$0H;|$(tHSXH+S8HHC@H+CHHHHHHHHC0H+C HHH9sWH|$HH5HIHK L{HH+C(HHHTHHHSDH$dH3%(H[]A\A]A^A_1f1AfH4wHHHHHHHHHHHHHHHH1HHIHHHHHNH<$HHHT$H|$0HHH9tHL`  UIHHHAUATSIHLPLXt&)`)p)U)])e)m)u)}dH%(H(1HFHHDž Dž0H)HELl$HH0IH LAHcID$HHI$wCHu}AUAT$H(dH3<%(I\$Lu\He[A\A]]f.H1LHI$IT$HLHHI$@HtATUSHoHH9t&IDH;HCH9tH H9uI$HtH[]A\f[]A\HVHHHWw fDUSHHHHHUHEHH3H[]uHFF HATUHSHtBt-thHFF H[]A\HHHL' HHLAD$H+E[]A\DH.Ht"H}vH}Ht HHDHH5HxH9t?*tuHEHNHH HxAWAVIAUATIUSHHHOHHI)H)HHH4IH9LH$H]HMMH$III)MtHII9t LHLHL$L$HL$L$IODM)L9tLLLIMHtHLmLuL}H[]A\A]A^A_L<FfDHH9-HuME1E1>AWAVAUATIUSHIH(L]XLU@HHGHGH~8dH%(HD$1LLH+EHH)LM0Hv HLD$HHHHLH)HHI93IHD$L!IHD$yHHHHH)HHL9kLD$LLH+EHH)IHLD$HHHHHLH)HHI9HH+](HLHwHHHvIJL9kxHL!I9tHL!I9uIt$I;t$t_HLD$tLLD$HIt$H}8Hu L]XLU@LM0"H|$dH3<%(LuHH([]A\A]A^A_fDHT$LLD$H H5H=I<$HHtH H=SHtot+[fGPWuHPC PS HPC uHH[H@LHH~LNLFLH)HHHx\HH~2MHH)I8HL@LHHxHLHfDHHxLHI L@HHHHHt3ATIUSHHsLHkHHHu[]A\@Ht3ATIUSHHsLHkHHHu[]A\@Ht3ATIUSHHsLHkHHHu[]A\@HtCATIUSHHsLHs@HkH{0HHHu[]A\HSHwXHHHHGHs(H{[HSHwXHHHHGHs(H{H߾x[Ht3ATIUSHHsLHkHHHu[]A\@Ht3ATIUSHHsLHkHHHu[]A\@Ht3ATIUSHHsLHkHHHu[]A\@SHHHHHHspH{`[USHHHHHHtHu>HHw1H}HE0oE HC0HE8C HC8E@C@H[]oFGHFHGUSHH_HtQLFHCAHtHHK(L9wHCE1HuEIu1HI9HGIGH[]fH_1H9_HtHHILEHH(HUSHHHOHHtHHC(HH[]H9t1HE(H9B(@/   *h~t/o/ '   - +  '/u0   ; ) ):)00f0tS  N 3N4du'\W.c^.)!=U    hGc          $q     K7C   C     2   '7?W~!!     ) )-4    Q   ATUISH8HoEHp LH@ f*E@0HtHLHH[]A\ÐHHD$HD$H1[]A\AUHGATUSHIHH9tLjL9n(Hv:HGH9Ht#HL9h(HsjHxHEHEH[]A\A]sfHO 1H9HtHL;h(Hs,H{HEHDH(tH_ HC(H9Bw3HLH[]A\A]fDHH1[]A\A]HH1[]A\A]AWAVAUATUSHHHHuH?IHI)H)HHH IH9LHT$H}HuLxHT$IIMt oAEH9t8LHHtoHHH9uHGHH)HHM| H9t5HLfDHtoHHH9uHH)HM|HtLeL}LuH[]A\A]A^A_f.HIHH9HuAE1E1 HGH;GtHtoHHGÐHHUSHHHOHHtHHC(HH[]H9t1HE(H9B(@USHH_HtQLFHCAHtHHK(L9wHCE1HuEIu1HI9HGIGH[]fH_1H9_HtHHILEHH(HAUHGATUSHIHH9tLjL9n(Hv:HGH9Ht#HL9h(HsjHxHEHEH[]A\A]sfHO 1H9HtHL;h(Hs,H{HEHDH(tH_ HC(H9Bw3HLH[]A\A]fDHH1[]A\A]HH1[]A\A]HHWLGdH%(HD$1Ht_HNLfDHHRHtH9J(sHRHuI9tH;H(sH4$HHH0Ht$dH34%(u HfLATUISH`HoEH@ HE HtsUHC@S8HU(HSHHU0HSPHS8HPHE8HE HE8HCXHEHE(HE0Hs LHtDHLHH[]A\HC8C8HC@HCXHCHHCPHs@H{0HD$HHD$H1[]A\AUATIUS8HMl$HoH@ HCI\$HHE0t\H}(fDHSHtHHs(H9rHS1HuHu'H9w,HHH1[]A\A]LI9\$u6HI9տuALHID$(HH[]A\A]DHHH}(Hp(H1HB(H9E(@AWAVLwAUATIUSHHH_Ht_LFfHCAHtHH{(I9rHCE1HuEIu$I9wAHH1[]A\A]A^A_LH9]toHIMD$Hx(HI9vM9AuV0Ao$LLHD@ HHE(HHغ[]A\A]A^A_@IAM9tE1IE(I9D$AAWAVAUATUSHHHHuH?IHI)H)HHH IH9LHT$H}HuLxHT$IIMt oAEH9t8LHHtoHHH9uHGHH)HHM| H9t5HLfDHtoHHH9uHH)HM|HtLeL}LuH[]A\A]A^A_f.HIHH9HuAE1E1 H9HOH9I,DIA@f.w HLII9LtS9A;8}ILIL)HHH~#LHHH@@uI9A8AHLuAWAVIAUAT0USHHIHoC IHs@ IEHAEIEImHkHtLM0oE H@ EHCHCI\$LcHuHu HmIHuHL[]A\A]A^A_fLHLHC@LLLIEhHLLHHAWAVIAUAT8USHHIHoC IHs@ HC0ID$HID$0ID$Il$A$HkHtSM8oE H@ HE0HC0EHCHCI]LkHuHu%HmIHuHL[]A\A]A^A_LHLHC@LLLID$[HLLHHH1Ht(u/HHHtWu HHf.HSHH(HKH9HcC t&HS(HrHH3HoC[Hs(9HvuHH3[SHHHH(HWH9t1H;Ht'H$HT$HCD$C HC(H@HHHHC[DHH@DP1D9t\ 2LKAAAAIcHHL9Ls1B4HcAHHL9L0rfAD9uց?8u%HcH{PH@8u?DPA9tHCS HHHC[EAf.ASD6HHCS HGAHvH?LIM~+LHH D:~3HHH D8|1HHu1I9t@87f.HLf.H)HyLHUSHH_HtaHL DHCAHtHHC H L9wHCE1HuEIu1HI9HGIGH[]H_1H9_HtHHHUIHL HP H AUHGATUSHIHH9HHL HF L9 vIHGH9Ht.HHH@ L9 HzHEHEH[]A\A]@s~HO 1H9HtHHH@ L; s:H{HEHD@H(tH_ HHC H H9 w.HLH[]A\A]fHH1[]A\A]HH1[]A\A]DD9Z}LD E9D9JAf.G OBDBf.FvD D9|DBIf.w7E9|MN Af.w@GDOF@BO GJDAODGI@FIf.ODGNDFHFAWAVAUATHUSH?HHHH9XL\$XLd$hIL$H\$pLL$`LD$PM!M!aD@L,I)@J4oo@Fo@ F Hh0Hn0HiHH?HHH9HH}oHHH)HL9uLhM9@M9uHh0LpLh Hl$HhL!I9tkH H5H=HoD$PH$oD$`HF0FoD$pF H[]A\A]A^A_DL9t+@f.HH)H4M!M9YL9|$USHH_HtQLFHCAHtHHK(L9wHCE1HuEIu1HI9HGIGH[]fH_1H9_HtHHILEHH(HAUHGATUSHIHH9tLjL9n(Hv:HGH9Ht#HL9h(HsjHxHEHEH[]A\A]sfHO 1H9HtHL;h(Hs,H{HEHDH(tH_ HC(H9Bw3HLH[]A\A]fDHH1[]A\A]HH1[]A\A]AUATIUSHPIHHIELHS HoHHC8HC0C HCHHC@HtFHHMt HHE(HH[]A\A]DH9t1HB(H9C(@HHD$HD$H[]A\A]AWAVIAUATIUSH8dH%(HD$(1HBII?IIL9 HHNAEHDH IDoH)L9Ho@Bo@ B H@0HB0HLBK IHqI)NHH)HHI9uIXLXL9AL9sMX0MPIXLhL` L\$LX0I!H\$IX L\$LXI!M9H H5H=DAuIWHH?HHH9tlHL$'HL$$$$$$$H@HD$(dH3%(H8[]A\A]A^A_HL6HHH)HHH)HooB@oB @ HR0HP0H@I9t A&fLT$I!I!M9L\$L9\$AAWAVHm۶m۶mAUATIUSIHHMD$H?LI)H)HHHH IH9LHT$I<$MD$HX8HT$IIMt$oHB0AoBIF0AFoB AF H9HG8HHLH)HHm۶m۶ HHHH!HH H)It f.HHt!ooBCoB C HB0HC0HK8H8H9uHpL9ttHE8LIm۶m۶ HH)HIIL!HHH)HfHt!oHF0oFHC0CoF C H8H8H9uHtM,$I\$M|$H[]A\A]A^A_fDL<I)I^H$I$IH9DHuͻ8E1E1TDijkstra%lu startedAdding new entry to queueEntry: vertex distance finishedAll neighbours of vertex processedChecking new neighbour of vertex /srv/scratch/marinovg/spades-cloudspades-paper/assembler/src/common/assembly_graph/dijkstra/dijkstra_algorithm.hppCheckPutVertex returned true and new entry is addedAWAVAUATIUSHdH%(H$1HHt$PHT$@H!HL$8LD$HHHHu HRHHHD$H$HD$H$ HD$(f.H;l$%H8HHtH1_LuID$pIHIL$hM!HI_t1HfHH@HtH9X(sH@HuH9t H9Z(HEHD$IHD$ H8IHtH1/ID$Ht$8H+pIG HIH8HD$0HtH1M;|$0|H8HHH1H|$Lt$(H5!LL$LD$@H5H 1LH$H$LH5HH$IEH9tHD$LHHpL$LH|1HH$IL9tH|$H;l$H8HHt H1f.H$dH3%(HĨ[]A\A]A^A_H|$Lt$(H5!LL$LD$@H5H 1LH$H$LH5HH$IEH9tHD$LHHpL$LHp1HH$IL9tH|$fDH8IHtH1HD$ L|$pH$L$HD$xHD$PH$HD$@H$HD$H$HD$HHpH;pHt/foD$pfo$Ffo$F H$HF0HF8Ht$HHFHt$HHPHL$oo@HH>H$1)$o@)$o@H)HHm۶m۶mHH)$$$H$$$$$H@#H|$H|$(H5IuHD$L$LHt$0HpL$H|$0LHs1H$IL9tH|$>H|$H|$(H5L$H5H Iغ 1LH$H$H|$(H5 HHD$XH|$XLH$IEH9tHD$0Ht$LHHHD$0L$H|$0LHu1H$IL9tH|$qH|$H|$(H5IuHD$L$LHt$0HpL$H|$0LHw1H$IL9tH|$H$HH}H5L$LD$@H5H 1LH$H$H}H5HH$IEH9tHuLHL$LH~1HH$IL9tHYH\$HHT$pHHC&HUHEH)HHHH|$HH$IHL9tHHHH$IHL9tStarting dijkstra run from vertex Priority queue initialized. Starting search already counted. Proceeding to next queue entry.Check for processing vertex failed. Proceeding to the next queue entry.Finished dijkstra run from vertex Dijkstra iteration startedVertex with distance fetched from queueDistance to vertex is found to be at distance from vertex UHAWAVAUATISHH8HdH%(HE1H8HtH1I% HHspHCPHDž HDž(HDž0HHC`LHHHChHHCpHǃHHCxHHHHHHHǃHǃHHHHHHH(H;0HǃHǃHHHHCHHDž@HDž`HDžpHHHHPHHXHhB Ht.fo@foPFfo`F HpHF0H8H(oFHHH 1)oF)oF)HFH)HHHm۶m۶mHHHH@H HHHHHRHtH9J(sHRHuH9HtH;H(s$HHHHHHH@8H@HHP0HP@H8IHtH1Z H@L HHHH(H9 {HH8IHtH1H HHHLo(oGLg0)HHGLw HHHHDHHRHtH9J(sHRHuH9HtH;H(s+HHHHHH HLp8Lh@L`HHp0H(HHPH)H8H(H8IHtH1HCpHHtNHHfHH@HtH;P(vH@HuH;Ht H;Q(HHHfoH)IH8HtH1HCPHH;C@HCPwCXH8IHH1LLHH5IvLM$$L LH1LH8IHID$H I$HBH9I $HJIL$HJHHBBIL$IH9HJ HHBH)IH|:0HI7fH HHJHHHJH@H@H H H9t"HtHJH HHH9uoBLHLl@IVH9~HN HFH)HHt20LH1H HHJHHH@H@HJH H H9t"HtHJH HHH9uoBHGM~HIM&M9t I<$ID$H9tI M9uM>MtLIMnInH[]A\A]A^A_f.HHoBAD$LHH9HuA 11AWAVAUATUSHHHHdH%(H$1H$HHD$ HD$`HHHD$(HLd$@HD$8HL$`L{Mt$HD$OHLQHH$H$HL$`H9u H9KH$H$H$HL$M$6$(L$H$L)uH$H$H)H9HLt$@H\$8HWAED$PLH\$HHuH;uHHH|$@tGHFIL$HHD$@H9]HHD$PHFHD$HI|$H|$@HBHD$HD$PH HuID$H9tHL$`H$H$HHHH;$Ƅ$f.L$H$Lt$@L)HH\$8Ht$1LHT$8HD$@HT$PHLHH\$8HD$@fDMt/$tAuIIHtH|$ HHH$dH3%(\H[]A\A]A^A_foD$PFHuDLHH|$@HHLHL$LD$H$H9$LD$HL$H$H9$HHHu8 f.HLu'HHHtH|$(HHL$MfDH$H9$tLt$@HD$8^H$H9$uEH|$@IHL9tHHLeLmLI9tH;HCH9tH LeHH$Ht$uHHHtH|$ HHHHHD$`HtuHHHtH|$(HHUHAWAVAUATLSIHLHL&dH%(HE1HFHLHPAELLLLLLL0LHDžpLLLLHHLLLL1ƅXpHvHHtHvHHtXHHDH@HpvH0HtHvHHtHvHHtHPLeLeLeEL9HEHpHtKHpHHPLHXHyPHHPHELeH9u&H9u!H;EuEHpHPHXHPLeHUHELHXLHpHt%u!HHHtHXHzHHvHHtHXLHDžpHEHEHEHEEHpHt%u!HHHtHXHyHLLLLHXLHDž`HDžhHDžpH LHHHHHXHHH`jXH ZHt%u!HHHtHHHHHpHt%u!HHHtHXHHHHtuHHHtIHHHtuHHHtI}HH`H LkHpHHhIL9H`LhHCHCHSHpt2I?LHH9tLH I9IuL`MtLH0HtuHHHtI~HHHtuHHHtI|$HHH]dH3%(He[A\A]A^A_]HpHXDH LHHH 8HHHHXH0HX8HxBvH HtƅX HHvHHtH@vH0HtHvHHtHvHHtHvHHtHHHHHHHpHtuHHHtHXHHHH0vH HtHHHHX HHHpHt%u!HHHtHXHHHHHHHI|$HHH0HtuHHHtI~HHHHtŨuHHHtI}HHH`HtHHtuHHHtIHHHpHtuHHHtHXHHHH HtuHHHtHHHHH?HHpHHHHHXHHoHBATUSHH?HHH9}vI%AJEHIIH9EAHI}TMHK IIHhEIIIE"E9AI|ARf.vf(f.HDuHII?LHH9IIIHPII?IIH9Ag|VAHf.vJHHHIAHH?HLHL9}+IMIIA9~AHHLAA@[]A\fHTHHIIIEAHHDHBHBUSHAHÃH?HHH9IKDL ED:D} HL EH9FI|HtoHPII?IIH9~?FD83DDLIE8~DI@N HH?HHL9|A []@HL 7uH@HII?LHH9t L rHTDDDHBL UAWAVIAUATI)USHIEHIIHo[IAMIMVA}A8}_88_AMA}VHH@8I|&H8} H8H9sH@8PAM{H88AU@~AMA}fDILHM)I~tMH6I^H@HALHHjLLHY^uAEIA $HL1L)LHA$jHXZH[]A\A]A^A_AEA>A}AMVIgBidirectionalPathAWAVAUATUSHHL$@dH%(H$1LIuHL$ IuLH$LHl$HHH\$Ld$x HHfD$@HD$@H\$hHD$D$@HHH$fD$`HD$`HD$(D$`H$(HH$ LfD$pHD$pHT$ HD$0D$pL$ LH$(Hf$H$LHD$8I9Hl$uM9LH|$LckH@0hf$uH|$8HH$ HH)H$(H9D$ HT$ LH)H|$0H\$XL$HH|$(HD$@HfD$PHD$HpHD$PHD$D$PHLf$H$HD$ H$ L$(IHL9ufDHI9tL+H@0hf$uH$ H$(HH9H1LH)H|$ H$HkHH|$HH|$HH|$H1HHDŽ$HDŽ$HDŽ$HDŽ$HDŽ$ HH$HHHH$HHHLH$DŽ$XvH$HtH|$LLH$PvH$@HtH$vH$HtH$vH$HtH$ IGH9tH$H$MuH9ufDH H9H8IHtHtξLHUHuLIuLM$$L$ LHLH$ IGH9tLH H9[fDH$H$H9t%H;HCH9tH H9uH$HtHH$dH3%(VH[]A\A]A^A_LHDŽ$(&@H$('H$HvH$HtH$vH$HtH$vH$HtH|$H$ IL9tHHHH|$ HHH|$HH|$HH|$HH|$0HH|$(HH|$8HHHLHH$PHH$@HHH|$/H$ IHL9tLH/srv/scratch/marinovg/spades-cloudspades-paper/assembler/ext/include/btree/btree.hnode->parent()->child(node->position()) == nodeposition >= node->count()position < node->count()HLDOA8A@tjD9uRI@8AHL;Ht%HH9uopH9HujHȉWHH9tHD9AMcK8HuH8tHGHDLDOHH H5H=H H5H=H H5H=/srv/scratch/marinovg/spades-cloudspades-paper/assembler/ext/include/btree/safe_btree.hgeneration_ > 0AVAUIATUISH_HH@dH%(HD$81fID$HMt$0I;FILH@DX1D9t` 2ML$AAAAIcHHL9Ls4>fDA4HcAHHL9L0AA9uҁ?8u-HcHwPH@8DXA9tID$ AT$(IL$ H9IcD$(NIT$0HrHPIt$HoAD$HHH<L!HHHHu HIT$8HHH9A|$HtgHL!A|$@HH8L@@tEHLL!Hp@HH8H9r;gHIT$8[EAfARD~@HzLH9sHD$8dH3%(H@[]A\A]A^IL$ IcD$(A|$@QHH9txWPI9|HHI$Lp LLt$(IHT$ LHD$H$HD$Hl$LHII>H98I|$HHcPHHHH:L!H1HIT$8AD$@LI|$0HH!H9H H5H=H HBH)HIt$09HvHIt$A~9x&QHHUHMH H5H=}H=HH=HH5Hvoid btree::btree_iterator::increment_slow() [with Node = const btree::btree_node >, std::less > >, std::allocator > >, 256> >; Reference = const restricted::pure_pointer >&; Pointer = const restricted::pure_pointer >*]btree::safe_btree_iterator::reference btree::safe_btree_iterator::operator*() const [with Tree = const btree::safe_btree >, std::less > >, std::allocator > >, 256> >; Iterator = btree::btree_iterator >, std::less > >, std::allocator > >, 256> >, const restricted::pure_pointer >&, const restricted::pure_pointer >*>; btree::safe_btree_iterator::reference = const restricted::pure_pointer >&]distance_t omnigraph::Dijkstra::GetDistance(omnigraph::Dijkstra::VertexId) const [with Graph = debruijn_graph::DeBruijnGraph; DijkstraSettings = omnigraph::ComposedDijkstraSettings, omnigraph::BoundProcessChecker, omnigraph::BoundPutChecker, omnigraph::ForwardNeighbourIteratorFactory, long unsigned int>; distance_t = long unsigned int; omnigraph::Dijkstra::VertexId = restricted::pure_pointer >]bool restricted::pure_pointer::operator==(const restricted::pure_pointer&) const [with T = omnigraph::PairedVertex]virtual std::map >, double> path_extend::AssemblyGraphConnectionCondition::ConnectedWith(path_extend::EdgeId) constsize_t path_extend::BidirectionalPath::Length() constbool restricted::pure_pointer::operator==(const restricted::pure_pointer&) const [with T = omnigraph::PairedEdge]N5boost9exceptionEN5boost16exception_detail10clone_baseEN5boost17bad_function_callEN11path_extend19ConnectionConditionEN11path_extend28PairedLibConnectionConditionEN11path_extend31LongReadsLibConnectionConditionEN11path_extend38ScaffoldGraphPairedConnectionConditionEN11path_extend32AssemblyGraphConnectionConditionEN9omnigraph16LengthCalculatorIN14debruijn_graph13DeBruijnGraphEmEEN9omnigraph20VertexProcessCheckerIN14debruijn_graph13DeBruijnGraphEmEEN9omnigraph19BoundProcessCheckerIN14debruijn_graph13DeBruijnGraphEmEEN9omnigraph16VertexPutCheckerIN14debruijn_graph13DeBruijnGraphEmEEN9omnigraph15BoundPutCheckerIN14debruijn_graph13DeBruijnGraphEmEEN5boost16exception_detail19error_info_injectorINS_17bad_function_callEEEN5boost16exception_detail10clone_implINS0_19error_info_injectorINS_17bad_function_callEEEEEN5boost9algorithm6detail13token_finderFINS1_10is_any_ofFIcEEEE8GCC: (Ubuntu 7.5.0-3ubuntu1~18.04) 7.5.0zRx 0DX'l#X  4H\p     !HTzPLRx $;HnXHPlKFE G(A0Z (A BBBA PH0ZAT(UAHK zAA(WAHK tIA$MAG(DbAHK IApFHyHH{=HpSHF}Ae J G$}Ae J G(DAAN a IAE (pAAN a IAE LBBI B(H0A8L?n 8A0A(B BBBD (cBAA w FBA D  G 4 BAD G0  AABD 0XBAD  ABA 0BAH  ABA PeBBB B(A0A8GM 8A0A(B BBBH <[P=Gm Hl$\AL E K 4UBAA { ABN AAB(MaAM WAA8dAD k ABI w ABF HH.BBE B(D0A8GP 8A0A(B BBBI L9BBB B(D0A8J` 8A0A(B BBBG bIM J |8BBD A(P` (A ABBF @,T:GDA dABE,:GDA dABE,:GDA dABE,JGDA qABH *H]0 7Hj,L :GDA dABE,| :GDA dABE, :GDA dABE 8Ar( sAAJ J AAH ($ AAD U AAC (P MAAS V DAH PhBBE B(D0A8D9 8A0A(B BBBI < }BAD L0B  FABB V CABl BFA A(J0E (A ABBA Q (G ABBK D (F ABBI D(F ABBH }BBD A(O@t (G ABBH V(A ABB8 @AC DI.4.^ H 8 AC HE..p G HD aBBB B(A0A8JP 8A0A(B BBBK  +( MAAS V DAH ( AAD U AAC l BFA A(J0E (A ABBA Q (G ABBK D (F ABBI D(F ABBHl BBD A(O@O (G ABBM c(A ABB D y C < BAD L0  FABA K CABLBBD A(Q0k (F ABBH l (D FBBF `dBBF B(D0A8G@P 8F0A(B BBBI a 8I0A(B BBBE HaBBB B(A0A8JP 8A0A(B BBBK L BBE B(F0A8M@ 8D0A(B BBBC (xAAG0 AAA L 0BBE B(F0A8M@ 8D0A(B BBBH ETAv I S,(RAG E EF  EA X}(lAAD d AAD l BFA A(J0a (A ABBE f (G ABBN D (F ABBA D(F ABB'HFBB B(D0A8KP< 8A0A(B BBBF (hAAD U AAC lBFA A(J0E (A ABBA Q (G ABBK D (F ABBI D(F ABBHBBD A(O@i (D ABBF n(A ABBlP\BBE B(D0A8DpYxJGGGGGGIpX 8A0A(B BBBD H(BBL B(D0A8JP 8A0A(B BBBG tD BBB B(D0A8G 8A0A(B BBBH NGKGGGGI@pPAC HD.@. 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%(LHlHe[A\A]A^A_]f.H8HHtHH8L HXH(HHHHHi_L@LI|$H5)HI|$H5 HIHXLH5HIH8LH0HPIL It$LIL LH=LH IL9tLH0L詡l@HLHL!f.H8IHtHH8L HXHHh8H@XHPHL@LI|$H5L It$HLL LHEHH IL9tLDHDH19L@LI|$H5 I|$HL It$I]LL LHVHH IL9tLH8IHtHuRHHPH0HpHLDžHHPL@LI|$H5 I|$IL It$LL LHaHH IL9tLHLHHhH(HHHHHtHH IHL9tH IHL9tLHHLHHjHH8H HH9tH`'HH IHL9tHSHHdH%(HD$1HP8HL$dH3 %(u HH[HGHW H9W0t G(8G8HV HIH:HL!~(u(LJLHIHHxLHHV LHHDHy8LI@LH!H9OHWHH!HF H+BL9OHHH@ HHH@`HHH@` @(@ 0SHH~H5H9t?*tuHC[1[SHH~H5H9t?*tuHC[1[SHH~H5H9t?*tuHC[1[SHH~H5H9t?*tuHC[1[SHH~H5H9t?*tuHC[1[SHH~H5H9t?*tuHC[1[SHH~H5H9t?*tuHC[1[HHHSHHH߾[HSHHHHGHHtHP HHH[DHSHHGHHHHtHP HH{HC[AUATUSHHHO0HG HQL LhH9HHG HHHVH9HHHHCxHQH9HHCxHH9tH@@ HH9t'H}HLLHHPH9uH[]A\A]DH(HC8HPH@HS8HHC(HC HS0 HHHPH@HHHHHDHHHPH@HHHHCxHH9AVLwAUIATIL9USLuRHL)uPHA,$I9t:+A:,$|SHC@8|CHȈPPHH@8|@(HI9u[]A\A]A^LLfDH@(HHH!HHHuHuHH@H@HPDH1HQH)HHHHWHHGH9tQATUHSHXH)HLdHH8HtL9HuHEHt[]A\Hf[]A\Ht HHATIUSHHGHH9t0H_H)HHlHH?HtH9HuI|$Ht[L(]A\SHHXHHHC8H{HHHHHCtHP HHH[UHSHoHHHG(HHGHHHHtHP HHHCH[]f.HSHHG8HHHHGHHtHP HHH[SHHXHHHC8H{HHHHHCtHP HHHH߾@[fDUHSHoHHHG(HHGHHHHtHP HHHCHH@[]@f.HSHHG8HHHHGHHtHP HHHH߾@[UHSHoHHHGHHHHtHP HHHCHH8[]HSHHHHGHHtHP HHHH߾8[USHHHHohHHtH=tZmH{ HHHtHkHtH=tLmHH߾x[]fDEPUuHEHPE PU ADEPUuHEHPE PU IDHEHPE DHEHP5@HEHPE JHEHP;SH_ HHGHtH=tkt2[CPSuHHPC PS fDHHPC uHH[H@SH_(HHGHtH=tkt2[CPSuHHPC PS fDHHPC uHH[H@SH_(HHHtH=tkt3[fCPSuHHPC PS fDHHPC uHH[H@USHHHHohHHtH=tJmH{ HHHtH[HtH=t= 0 && orig_gap.NoTrash()ReadCloudGapExtensionChooserFactoryExtracting intersection between prefix and suffixUnexpected cycle while polishing path, stopping polishing PathProcessor nonzero exit code, gap left unchangedClosing gap with mate pairs between edge Closing result length too long: ptr_.get() == rhs.ptr_.get()gap_len_[0].gap == 0PathPolisherGap left between and PathExtenderGapCloserCreating extenderLast edge: Target edge: Target_vertex: Current vertex: Before makegrowstepAfter makegrowstepno breakAdded edge Overall length While endedOriginal gap: , added path.GapAt(0) == Gap()PathGapCloserGap between gap after DijkstraGapCloserFilling gap with prefixfiling gap with bridgesPrefix entry size: Suffix entry size: Prefix length: Suffix length: Creating predicateCreated predicateposition > 0Incorrect gapCreated chooser paths processedProcessed paths from %)Unique path gap closing:MatePairGapCloser and edge was Filled lenVerification of expression 'false' failed in function ''. In file '' on line . Message ''./srv/scratch/marinovg/spades-cloudspades-paper/assembler/src/common/barcode_index/scaffold_vertex_index.hppHead entry extractor from BarcodeIndexInfoExtractorWrapper is currently not supportedATUSHH\$ dH%(H$1HH{H5H{H5H{H5H{H5}H{H5 H{H5kH{H5 H{H5 HHH5UHH5HHHsHHT$H4$H=HH<$HEH9tHsHHT$H4$H=HH<$HH9tH=H=H H5H=HHHH<$HIH9tL'+0  [, ], final: ATUHSH5IHӺLH5HIHLH H5HźHHH H5HHǺ H[]A\ATIUSH?I;|$tV1DHHHH;HtHP(H{HHtHP(I<$ID$HHCH)HH9wHI|$t[]A\fD[]A\UIHHHAUATSIHLPLXt&)`)p)U)])e)m)u)}dH%(H(1HFHHDž Dž0H)HELl$HH0IH LAHcID$HHI$wCHu}AUAT$H(dH3<%(I\$Lu\He[A\A]]f.H1LHI$IT$HLHHI$@HtATUSHoHH9t&IDH;HCH9tH H9uI$HtH[]A\f[]A\ ()AVAUIATUSIIHHHHdH%(H$1H{LH5HIHLH!Hu I+vH5HHsLHH$dH3 %(LuHĐ[]A\A]A^HHH9EYHVHHHWw fDUSHHHHHUHEHH3H[]uHFF HATUHSHtBt-thHFF H[]A\HHHL' HHLAD$H+E[]A\DH.Ht"H}vH}Ht HHDHH5HxH9t?*tuHEHNHH HxUSHHHHtfDHHHuHEH}1H0HH}HEHEH9tH[]fH[]/srv/scratch/marinovg/spades-cloudspades-paper/assembler/src/common/assembly_graph/dijkstra/dijkstra_algorithm.hppDistanceCounted(vertex)ATUISHGpHHohHHHDHHIHtH9Y(sHIHuH9|H9Z(wvHHfDHH@HtH9X(sH@HuH9t[H9Z(wUHDHHIHtH;Y(vHIHuH9tH;X(HB[H@0]A\ID$pHwH H5H=int_id_ < 2HHHwH!H HHw SHH{w[H H5H=USHHHHtfDHHHuHEH}1H0HH}HEHEH9tH[]fH[]Ht3ATIUSHHsLHkHHHu[]A\@ATIUSH?HtAID$HI\$(HhH9vfDH;HH9wI<$[]A\f.[]A\ATIUSH?HtAID$HI\$(HhH9vfDH;HH9wI<$[]A\f.[]A\HATUHSHHHtHHt7HHL`I9vH;HI9wHH}h[H}]A\HATUHSHHHtHHt7HHL`I9vH;HI9wHH}hH}[H0]A\LHH~LNLFLH)HHHx\HH~2MHH)I8HL@LHHxHLHfDHHxLHI L@HHHHLHH~LNLFLH)HHHx\HH~2MHH)I8HL@LHHxHLHfDHHxLHI L@HHHHAWAVIAUATIUSHHHHHdH%(HD$81Ld$HLLxHD$L0HP@ 4$Hs L$T$LD$ HD$HMHHPH0AH\$8dH3%(uHH[]A\A]A^A_#L L`  (*nF6G}(9   "    +R83TFk$M%4e}%4e}%4e} < :   <-DI?Q?Q:HM!      ?  //+ /  +   .   / +h/o/ &   - -!/q0   ; ) ):)00f0tN#    *   )     Z#      *   *     4! (   '   6    !     @     )       > B B  2 k    B   Q4du'\W.c^.Jf-aj_PN  ;  8  +       0  ,6f;:3      HH++#n0@pj   !           b94 `<0K7CC 2     CDl>Z     x    6   - 6n  A > 3/A)&*w'=* .     O   .    5S"= "        z!   !  _*(Path Length Weight #, edge (length), gap info, total length, total length from startAWAVAUATUSHdH %(H$1HO@H9O Ht$IH5HLH LH5HH5L1HC H9C@t HHL|$LH5HH5LfLZ(H5HH5ALH5LHCXH+C8HHHHHC@H+CHHHHS0H+S HHHC 1HD$(HD$@HD$H$H$H$HD$0HD$`HD$ HD$pHD$8fDHH?HHHH)HHH0LH5HIHC H9C@QHHKxHHH+HHHTHH?&IH4IIM)J4H;HC H9C@*HHKxHHH+HHHHHH? HHH)H HH+HLH5HH|$`H;|$8tHSXH+S8HHC@H+CHHHHHHHHC0H+C HHH9H|$HH5HIHt$(H|$HL{HD$@H<$LpL H|$0LH5HIHLI!It$ I+wH5HL<$H|$ IwLHT$hHt$`LH5HIH|$HHHD$@H5LD8DhD`@ D$DLH5HIDLH5HIDLH5 HIt$LH5HIHKxHH+HHHHHHH$dH3%(H[]A\A]A^A_1uf1fH4HVHHH1HHHHHHH<$HHHT$ H|$`HHH9tHAWAVIAUATIUSHHHOHHI)H)HHH4IH9LH$H]HMMH$III)MtHII9t LHLHL$L$HL$L$IODM)L9tLLLIMHtHLmLuL}H[]A\A]A^A_L<FfDHH9-HuME1E1>AWAVIAUATIUSHHHOHHI)H)HHH4IH9LH$H]HMMH$III)MtHII9t LHLHL$L$HL$L$IODM)L9tLLLIMHtHLmLuL}H[]A\A]A^A_L<FfDHH9-HuME1E1>H=SHtot+[fGPWuHPC PS HPC uHH[H@/srv/scratch/marinovg/spades-cloudspades-paper/assembler/src/common/modules/path_extend/scaffolder2015/scaffold_vertex.hppvertex.GetType() == EdgeUSHHH8dH%(HD$(1HH|$HH\$Hl$HtH=uQCHHHtHH$HT$H$HT$HL$(dH3 %(uOH8[]CH|$HtWH H5H=HHtHHHt3ATIUSHHsLHkHHHu[]A\@USHHHHHGHtH=t.mtOHsXH{HHs(HH{[]EPUuHEHPE PU DHEHPE uHEHPHt3ATIUSHHsLHkHHHu[]A\@Ht3ATIUSHHsLHkHHHu[]A\@Ht3ATIUSHHsLHkHHHu[]A\@Ht3ATIUSHHsLHkHHHu[]A\@SHHHHHHspH{`[AWAVHAUATIUSIHHMD$H?LI)H)HHH H 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HCI\$HHE0t\H}(fDHSHtHHs(H9rHS1HuHu'H9w,HHH1[]A\A]LI9\$u6HI9տuALHID$(HH[]A\A]DHHH}(Hp(H1HB(H9E(@AWAVAUATUSHHHHuH?IHI)H)HHH IH9LHT$H}HuLxHT$IIMt oAEH9t8LHHtoHHH9uHGHH)HHM| H9t5HLfDHtoHHH9uHH)HM|HtLeL}LuH[]A\A]A^A_f.HIHH9HuAE1E1 AWAVIAUATUSHHHGHHw(H_II)IIK 'H< H9vEH)HHJ HEH]HHIH)H9H9HL9LHCLlHI9J<T$ H $LH $T$ IHu(H)HHJHEHEHLHPH9t H)HH}ILuLmHH](HEHHE JD#HEHHHE8HHE@H[]A\A]A^A_DH9tLH)HAWAVIAUATUSHHHGHHw(H_II)IIK 'H< H9vEH)HHJ HEH]HHIH)H9H9HL9LHCLlHI9J<T$ H $LH $T$ IHu(H)HHJHEHEHLHPH9t H)HH}ILuLmHH](HEHHE JD#HEHHHE8HHE@H[]A\A]A^A_DH9tLH)HAWAVIAUATUSHHHGHHw(H_II)IIK 'H< H9vEH)HHJ HEH]HHIH)H9H9HL9LHCLlHI9J<T$ H $LH $T$ IHu(H)HHJHEHEHLHPH9t H)HH}ILuLmHH](HEHHE JD#HEHHHE8HHE@H[]A\A]A^A_DH9tLH)HHGH;GtHHtHHHHWÐATUHSLg(HL;'tUID$HC(HPH@HS(HHCHS HHHSt HUH[]A\Lc(gap_len_[0] == Gap()AWAVIAUATUSHHE(ExdH%(HD$81A@$A@ D$HH!HG H;G(Hn8Lf@%HHtHhL`IV II+H\$IHHHHII+HHIH)HHIH\$1HHHD$HD$DEu D@EcHt$1HHD$0HPx zHt$1HL$HD$4$D(DxH IpI9kHHtAAAAIIVHINxH!I~hH@ H+BI9Ht IcHHHHD$$Dl$MM;D|$D$D$D$t(fDI}ILHLIHM9uHD$8dH3%(gHH[]A\A]A^A_xx fDH_8H;_HCIF8HPH@IV8HIF(IV0HHIV HLfDII;HT$HT$HBIHPH@IHIIHHIPHǀǀƀ/HI^8IIGH H5H=#!data_.empty() || gap == Gap()AWAVAUATIUSHHIH(dH%(HD$1HG@H9G `HKPHQH9HtH(L`HHC@HHHQH9Ht AoEHHHSHHH!HHLp HCxL+rIcUL@HHH9H9uHHQH97HtL0HHAoELL;)$t-II}MHHLIHPL9uHD$dH3%(SH([]A\A]A^A_f.HHHMDD Eu DAEtWHC@H;C |AuuAMuAUu A} YH H5H=fyuy u뚐LsXHKLH+CHH)HwH{1ҾLsXIFHC@HtH(L`HCXHPH@HSXHHCHHC@HSPf.LHLH+HH)HwH1ҾLIFHHt AoEHHPH@HHHHHhLHKpLH+ChHH)HwH{h1ҾLIGHHtL0HHPH@HHHHHRAWAVAUATIUSHHkH=LkhHhdH%(HD$X1HFH;1HHCHCHC HC(HCHC0HC8HC@HCHHCPHCXHC`HCh1HCpHCxLHǃHǃHǃHǃHǃHǃHǃHHǃHǃHǃHǃ1HǃHǃHǃHǃHǃHǃHǃHǃHǃHH ID$@I9D$ ǃ(?I;D$HD$0HD$4D$<HH#PLt$0HLHHR@Hp8ID$XI+D$8HHHHID$@I+D$HHHIT$0I+T$ HDlEID$ 1IHD$DMcHHD$HD$ HD$HHI$HHH)HHHЋ0PLH@ t$ Ht$T$(LL$$H)D$,HD$0HL$H8L!HW@Hw8HHH9l$tKI$IEH)HI+$HHHQHHHPfHH_@H|$XdH3<%(Hu)Hh[]A\A]A^A_fDID$XH@HPHHHLHHHHfrom <= to && to <= Size()AWAVAUATUSHhdH%(HD$X1H9aIHVXH+V8HF@H+FHIHIHHHHHHHF0H+F HHI9ID$H=HkLkh1HCH;HCHHCHC HC(HC0HC8HC@HCHHCPHCXHC`HCh1HCpHCxLHǃHǃHǃHǃHǃHǃHǃHHǃHǃHǃHǃ1HǃHǃHǃHǃHǃHǃHǃHǃHǃHM9H ǃ(?=ID$ MLIHD$HD$0HD$HD$ HD$pHHI$HHH)HHo)D$ Ht$H|$HHD$0HL$HH0HPHII9I9I$HI+$HHHgHHHfIT$XI+T$8ID$@I+D$HHHHHHHID$0I+D$ HHI9(A@J)H|$XdH3<%(HuXHh[]A\A]A^A_fDH H5H=@D$ HD$$D$,LHHHHHHHHATUHSHHILU0IHMHEHtYE1LMHHHHHHtfHt oC EHHl$XHHHD$HhH9t HD$`H9uHS HLHl$XHD$PH9QIH$HD$H$HD$(I7IWH|$HH9D$8IL9uHl$PE1HtHH\$H$pHH$@HH$H{`H$8dH3 %(DHH[]A\A]A^A_fDHH!HHHHIHBHHD$H;\$2H$HD$0fHH9\$ HCL3H$H8IHtH1hIt$`H|$pIT$@HL!H@ H+BH9$sMl$`H$LIEHHD$ HD$@HILLHD$ ЄAH|$HHtH8HHtH1AeHl$P6L$LI}H5HsI}H$IuHmHL$LHv1HH$HH9tLHg]DH|$H|$(H5H4$H|$(HD$H|$0MmHpL$LH|1LHD$0H$HH9tH|$E1L$LI}H5H+H$IuHL$LH1HH$HH9tLEHl$POHHHHD$H|$HHHtH|$PHtH|$HHHE1HLH$HHH9tHH$HHH9tHLrHHT$0H$HHH9tH|$@HFilter startedTrying to close gapPath length: Last unique: candidatesFound supported edgesCandidates were not found.Final result size: Filter finishedSupported edges are reachable from some candidatesAWAVIAUATUSHH(H|$ HL$(dH%(H$1H8HtHHHD$ HH@H@IFXI+F8HHHHIF@I+FHHHIV0I+V HDHMn HJHD$HD$@E1HL$HD$fDH\$LeHLH|$L)HID$HT$@It$HHRtTHHH@HtH;P(vH@HuH9t(H;Q(r"H|$LHHD$@LhIL9|$iE1fDH8HHtHMH8HHtHH8HHtHH8HHtHH8HHtHugH8HHtHvMt H}XH$dH3 %(HD$  H([]A\A]A^A_L$LI|$H5 HuXI|$L3H\$pIt$HLL$pLH5LH|$pHH9tLL$LI|$H5 I|$LL3H\$pIt$HLL$pLH4LH|$pHH9tLOL$LI|$H5 IF@I;FHHpI|$L3H\$pIt$HLL$pLH3LH|$pHH9tLL$LI|$H5L+H\$pIt$HLL$pLH.LH|$pHH9tLgL$LI|$H5HH\$pIt$HILL$pLH1LH|$pHH9tL0L$LI|$H5 IF@I9F LHI|$HH\$pIt$HILL$pLH2LH|$pHH9tLHD$(L`HI91HD$0Lt$@IHD$HEPHD$DHEHHSHpH@Ht1HfDHH@HtH;P(vH@HuH9tH;Q(s*Hu`LHHU@L!H@ H+BH9D$`HI9uHD$ HHH9WH8HHtHHD$ HL`I9YL$Lt$pIEIIFHD$HI9%H8HHtH1tѾLHsLIuLHmLL$pLHC1HH|$pH;|$tLhL$LHD$(I|$HpH+0HHHH5HL3H\$pIt$HLL$pLH6LH|$pHH9tL1(IFXH@HfHE`H3HSH|$HD$HL8Ht$H|$AׄH|$8HtHT$'HHHD$ HpH;pHHtoHCHFHD$ HHpHD$(L`HI9%LmPDHEHHSHpH@Ht1HfDHH@HtH;P(vH@HuH9tH;Q(sHUpHHHI9uHD$ HH9HH8HH4HL$LI|$H5H+H\$pIt$HLL$pLHOHHD$ HHH9oH8HHHt{L$LI|$H5H+H\$pIt$HLL$pLHQHH|$pHH9tLH8HHHL$LI|$H5 HD$ I|$HpH+0HHHH+H\$pIt$HLL$pLHSHH|$pHH9tLHD$ HL`I9L$Lt$pIEIIFHD$HI9H8HHtHtξLHsLIuLHmLL$pLHUHH|$pH;|$tLbH8HHtHH8HHwH^L$LI|$H5H+H\$pIt$HLL$pLHXHH|$pHH9tLH#L$LI|$H5HD$ I|$HpH+0HHHH+H\$pIt$HLL$pLHWHH|$pHH9tLH|$ HZ'LHH,HD$ HpH;pt&HtoHCHFHD$ HHpH|$ HL$LI|$H5HD$ I|$HpH+0HHHH5HH+H\$pIt$HLL$pLHAHH|$pHH9tLH|$pHHH9tHLHD$ H8HtHHHLH|$pIHL9tH|$8HHtrkd_ZQHe?u5kfaHLHH|$pHHH9tHAUATH)USHHHHHyHBH<DHD#IvLM ILM~5LHL\ E:#~ t@IIN\E:#dLHuI9t D:eDcILM~9LHL\ E:#~$8IIN\E:#,LHuI9t D:eeDcILM~1LHL\ E:#~IIN\E:#LHuI9t D:e-kIM~4LHMA:+~ DIIOA:+LHuM9t A:(HH9HH)HHIHHHLH[]A\A]ILfL)IkLiZILf.L)IkLiILf.L)IkLiILf.L)MCLaHHH[]A\A]fDHHH[]A\A]fDH3HuH3HuH3HAWAVIAUATUSHHHdH%(H$1HD$HSHHT$ H|$HLl$ HD$0H|$0Ht$ILl$@LLt$@HD$pH|$pHt$0IL$qLL$HD$PILd$`yLD$PHt$pLLLd$`HDŽ$IL$H$LHHHHLjHIXZH$vH$HfDIvH|$0HtIvH|$HtL9LKIWuLcMILE IvLK MM~4LHI<D:~ DHHI<0D:HHuL9tE:|IL9uHH$dH3%(LHĸ[]A\A]A^A_@LHL$pLHHD$PHHL$HL$HL$HDŽ$LLd$PH$HH$LH$HLjH^_H$ILhHLf.H)LGLQLHHD$pHt$0ufDLHHD$0Ht$#fDHHT$H3HHD$HT$H$HXLd$PM@H|$PHHtH|$@vH|$0HtH|$ vH|$HtHH|$pHHuHHATL%USHHL#H}HHCHH{tHPHE HC HE(HC(E0C0HHH(HC[]A\HHL#HUSH@HHHHHHC8HHH5HHH8HCH8HC8HHHUSHHHxH@HHHHHC8HHH5HHH8HCH8HC8HHHAUATIUS@HHHdH%(HD$81LHHHHHHD$HD$ L%H$H(HD$(HD$HD$0HC8H|$HL#HCHH{tHPHD$ HuH{HC HD$(HC(D$0C0HHH8HCH8HC8HHH5HIL#HMHHLHIAWAVIAUATIUSIHHHGH)I)HHH HH9 HHT$H4$H4$HT$Lh HHIt>ID$H I$HBH9I $HJIL$HJHHBBIL$IH9HJ HHBH)IH|:0HI7fH HHJHHHJH@H@H H H9t"HtHJH HHH9uoBLHLl@IVH9~HN HFH)HHt20LH1H HHJHHH@H@HJH H H9t"HtHJH HHH9uoBHGM~HIM&M9t I<$ID$H9tI M9uM>MtLIMnInH[]A\A]A^A_f.HHoBAD$LHH9HuA 11AWAVAUATIUSIHHHHnL$HL$dH%(H$81LHAD$LLLt$$$L$H$PHHD$(I$LHDŽ$$hH$HHD$0IL$$hLLLd$8$$L$@LL$$LE1䉄$X1EH$PvH$@HtH$vH$HtHEHDH$H$vH$HtH$`vH$PHtH$vH$HtH9H$H$H$H$Ƅ$  H$HtSH$HHHH $HyPHH$H$H9u-H9u(H;$uƄ$ DH$HH$H$H$H$H$H$HHD$ HH$HtuHHHtH{HH$vH$HtH$H|$HDŽ$HDŽ$HDŽ$HDŽ$HHDŽ$Ƅ$ H$HtuHHHtH{HHl$0Ht$HH\$(Ht$ HHLHD$pHD$xHDŽ$Hl$8HHH<$LH$HHH\$@HD$hH$IoHD$HD$pHD$HHCHD$VfHH|$QHH$H$H$H9u H9cH$H$H$HL$M$I$ ;L$H$L)uH$H$H)H9HH$H\$h HA$$HH$Ht$xH;$1HH$tRHFHH$H9HH$HFH$HHFH$HDŽ$Ƅ$H Ht$xH9tH$H$H$HnHHH;$Ƅ$D(L$H$L)Mt.$ tAuIIHtH<$HHH$Ht#uHHHtH|$8HHH$@HtuHHHtI~HH$PHt#uHHHtH|$(HHH$Ht#uHHHtH|$0HHHD$pI]ImH$IEHD$xH9H\$pHl$xIEIEIUH$t H;HCH9tH H9uHl$pHtHH$Ht#uHHHtH|$HHH$Ht#uHHHtH|$ HHH$8dH3 %(LeHH[]A\A]A^A_Ht$1LHT$hH$H$HLHH\$hH$@fo$F fDH|$HLH$fDHHLHL$XLD$P:H$H9$LD$PHL$XH$H9$:HHH%fDH)HMH$H$VH$H9$H$HD$h@H$LHHD$@$X $Ht$@HIH$$L$AD$vH$HtA?@HHHH|$@HHL$H$H9$HH$Ht"uHHHtH<$HHH$Ht#uHHHtH|$ HHHHH$HtuHHHtH|$HHHH$HtuHHHtH|$0HHHH|$pHtH$PHtuHHHtH|$(HHHH$@HtuHHHtI~HHH$HtèuHHHtH|$8HHHH$HtuHHHtH<$HHHLd$pH\$xLH9tH}HEH9tH Ld$xHH$vH$HtH$PvH$@HtH$vH$HtH$vH$HtH$`vH$PHtH$vH$HtH$H$HHHH$HtuHHHtH<$HH띾 LHHH$HQIHHH9H|$@HH!HH$H+#HHHH<$HHH$IHL9tHHBHWHlHHAUHGATUSHIHH9tL*L;n Hs;HGH9Ht#HL;h HvjHxHEHEH[]A\A]ÐvfHO 1H9HtHL;h Hs+H{HEHDH(t H_ HH9C r4HLH[]A\A]HH1[]A\A]HH1[]A\A]AWAVIAUATUSHhH_Ll$ dH%(HD$X1LHD$ HCLHT$(H$HD$HD$HxH{LL`8HHhHH\$I9tXI(HtHE HHHH\$I9Ht+H;\$uHU HLHH\$I9HuIEH,$MwMgD$(HD$0HD$8IHD$@HD$HM9tH9tID$ H9EsTHM9uHt$0LH\$HH<$HtHL$XdH3 %(HuoHh[]A\A]A^A_fvLI눐LHLHHuHI@HHLHHIH<$HHtHHt$0LHH<$HuExtracting entry from edgeEntry size: AWAVIAUATLgUSHHHGHGLgLg HG(dH%(H$1H8IHtH1MnH;IEL8HL$@HHHL$Ht$LAH|$HH$HtH8IHtH1IF(H;MnHD$HD$0IELt$0HT$8HD$@LHD$HHD$PHxLxPIELHxHXHHD$(HD$QHSPHC IHD$(H9$r,HL$H;K(w!Ht$HH;t$PHtHHHt$HHHIELHxH8H9uH\$@HD$HH)IIH~AHHLHHtHHHHHIIuH8HHtH1yH|$@HtH$dH3 %(HH[]A\A]A^A_fDL$LI}H5H4$I}IL|$`IuLHD$LL$`H|$LH]1H|$`IL9tL@L$LI}H5IL|$`IuLH$LL$`H<$LH[1H|$`IL9tLHT$H|$@L$LI}H5 Ht$HH+t$@I}HL|$`IuHLLL$`LH`1HH|$`IL9tLH|$`IHL9tLH|$@HtHuHHHHHLH|$`IHL9tHH|$HHHtScaffoldVertex of unknown typeAVAUIATUHSHIHHl$ HdH%(H$1HELD$(HD$0HD$HHD$8HD$@uPLd$H$M^H=AT$HD$Ld$BAD$HT$LH@H8IHHtLl$pLI}H5M4$Ld$PIuLLL$PLHTLH|$PIL9tLHt$0HCH>T$(HsSHT$8HSHT$@HS HF1HD$HHD$0HD$HHC(HEHD$8HD$@HH|$HtH$dH3 %(HH[]A\A]A^ÐLd$H$MH=utAT$HD$Ld$BAD$HT$LHH|$HtMtLHt$0UIT$HD$Ld$@IT$HD$Ld$CHCHCHC HC(@HD$HD$DHD$HD$0HHt$0HH|$HtHH|$PIHL9tLHH|$HHtMtLAVAUIATUISH@HnHH\$ dH%(HD$81HEHLhHLHD$HT$HH$HT$HHHL$AH\$ HT$(ID$AD$ID$ID$ID$ H)ID$(HHH~;LHHHHtHHLHHHuH\$ HtHHL$8dH3 %(Lu H@[]A\A]A^It$LHH|$ HtHAWLAVAUATLiUSLrIHHGLL HiHZGHG(I9tI9tHE H9C s(HI9HuHL[]A\A]A^A_fDvHH뵐HK LLHHL$HHuHIH@HL$HLHIt$HLHAWAVIAUATH USIHHdH%(HD$x1HLp0H@(H9+H_Ld$@HLHL@LD$HLHD$HT$HHD$@HT$HH|$ LHL$LD$AH\$ HT$(ID$D$HHD$PHD$XHD$`H)HD$hHHH~=fLHHHHtHHLHHHuH\$ HtHLLLAHt$PLHHL$xdH3 %(Hu.HĈ[]A\A]A^A_Ld$@HHHLHt$PLHH|$ HtHHt$PLHAWAVAUATUSHHHHuH?IHI)H)HHH IH9LHT$H}HuLxHT$IIMt oAEH9t8LHHtoHHH9uHGHH)HHM| H9t5HLfDHtoHHH9uHH)HM|HtLeL}LuH[]A\A]A^A_f.HIHH9HuAE1E1 HBUSHAHÃH?HHH9IKDL ED:D} HL EH9FI|HtoHPII?IIH9~?FD83DDLIE8~DI@N HH?HHL9|A []@HL 7uH@HII?LHH9t L rHTDDDHBL UAWAVIAUATI)USHIEHIIHo[IAMIMVA}A8}_88_AMA}VHH@8I|&H8} H8H9sH@8PAM{H88AU@~AMA}fDILHM)I~tMH6I^H@HALHHjLLHY^uAEIA $HL1L)LHA$jHXZH[]A\A]A^A_AEA>A}AMVIgBidirectionalPathAWAVAUATUSHHL$@dH%(H$1LIuHL$ IuLH$LHl$HHH\$Ld$x HHfD$@HD$@H\$hHD$D$@HHH$fD$`HD$`HD$8D$`H$(HH$ LfD$pHD$pHT$ HD$(D$pL$ LH$(Hf$H$LHD$0I9Hl$uwM9LdH|$LckH@0hf$uH|$0HH$ HH)H$(H9D$ 9HT$ LH)H|$(H\$XL$HH|$8HD$@HfD$PHD$HpHD$PHD$ D$PHLf$H$HD$H$ L$(IHL9u~fDHI9tL+H@0hf$uH$ H$(HH96H1LH)H|$H$HkHH|$ HH|$HH|$1HHHDŽ$HDŽ$HDŽ$HDŽ$HDŽ$ 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LD$I9LCICHH;L$8AoAHBMMD$@uHT$@HHH?HHH9HCII?IIH;\$0HLDHMHM44IzhIH!Hp8IBpH!H6H!HL~t8IHf.IHRHtL;z(vHRHuL9tM;y(s0HL$H|$LT$LT$H|$HL$IBpHHIfIH@HtL;x(vH@HuL9M;y(zHDHHRHtL;z(vHRHuH9tL;x(HBLH0HD$(MH!Hp8ICpI{hH!H6H!HL~t8IHIHRHtL;z(vHRHuL9t M;z(Hs=L\$HL$ LL$H|$L\$ICpHH|$LL$HHL$ IDIH@HtL;x(vH@HuL9txM;z(rrHDHHRHtL;z(vHRHuH9tL;x(HBHLL9H0vnHUAoHH?HHH9l$0HH@H H5H=D$@H\$04H\$0HLHD$(HHD$HHCHX[]A\A]A^A_HDHHHAoAHf.LH\$0AWAVAUATUSHhdH%(HD$X1HHT$8Ht$0H)H=<HIHHGHIHD$@HD$PHD$HHD$0L)HHHl$8H\$PIL`IEI?IIL!IHH8Ot I.L!H L!L!HQHqHD$HD$PHHE8L!HL!HQHqH9D$HD$0HHI6IVL@H|$HIUIEAoAEIIFIEHl$@Ld$0DL!LHl$ Hp8MMIFpL!H6L!HHNIvht5HHHHRHtH;J(vHRHuH9tH;O(s0LL$Ht$HL$IFpHL$Ht$LL$HHHfHH@HtH;H(vH@HuH9H;O(HDHHRHtH;J(vHRHuH9tH;H(HBM!L@0LIA8L!H0IBpL!HLvIrht5HH@HHRHtL;r(vHRHuH9t L;w(Hs3LT$LD$Ht$LT$IBpHHt$LD$HHHH@HtL;p(vH@HuH9L;w(HDHHRHtL;r(vHRHuH9tL;p(HBL9@06Mt$Hl$(LfIELHl$LEL!MahHH8IApL!H1L!HLvt4LHHHRHtL;r(vHRHuL9t L;w(Hs)LL$LD$LL$IApHLD$HLfHH@HtL;p(vH@HuI9lL;w(bLDHHRHtL;r(vHRHuI9tL;p(IBM!LH0LI@8MbhL!HIBpL!HLqt5LH@HHRHtL;r(vHRHuI9t L;w(Hs)LT$LL$LT$IBpHLL$HL HH@HtL;p(vH@HuI9|L;w(rvL HHRHtL;r(vHRHuI9tL;p(IBHL9H0 Ld$Hl$(L9sJHUHEAo$EI$ID$HHEH H5H=HT$8Ht$0HHHL)H=H|$8Hl$0rHLxHIMIMII $MD$IHLLIMuLt$ IAoEL1IMFL)AHILHIHHD$XdH3%(Hh[]A\A]A^A_H|$@L@H7HWH|$HtkIEIUAoEIEIUAEjHD$@I $MD$H|$HH0HPtIUIEHL$0oAAEHQHAIEIVI $I6MD$H|$HIUIEHt$ PathProcessorGot to vertex Maximal count Pushing edge !reversed_edge_path_.empty()curr_len_ >= lenPopping edge /srv/scratch/marinovg/spades-cloudspades-paper/assembler/src/common/assembly_graph/paths/path_processor.hpp of recursive calls was exceeded!Iterating through incoming edges of vertex AWAVIAUATUSHdH%(H$1Ht$PHT$XHL$(H8HtH1HIFHHH= IFHIHXH9\$X' H8HHtH1cL$HDŽ$HDŽ$HDŽ$LHT$PHH!H#BHHHIu H* IHD$`H$III9H$LEIM!Ix8HL!Hr8L!H6L!HVHphH@pHtfHDHH@HtH;P(vH@HuH9t path_extend::ReadCloudGapExtensionChooserFactory::CreateChooser(const path_extend::BidirectionalPath&, size_t) constpath_extend::Gap path_extend::DijkstraGapCloser::FillWithBridge(const path_extend::Gap&, const PathsT&, path_extend::BidirectionalPath&) constvoid omnigraph::PathProcessor::Traversal::Pop() [with Graph = debruijn_graph::DeBruijnGraph]bool omnigraph::PathProcessor::Traversal::Go() [with Graph = debruijn_graph::DeBruijnGraph]path_extend::BidirectionalPath path_extend::PathGapCloser::CloseGaps(const path_extend::BidirectionalPath&) constpath_extend::BidirectionalPath path_extend::BidirectionalPath::SubPath(size_t, size_t) constdebruijn_graph::EdgeId path_extend::scaffold_graph::EdgeGetter::GetEdgeFromScaffoldVertex(const path_extend::scaffold_graph::ScaffoldVertex&)virtual barcode_index::SimpleVertexEntry barcode_index::BarcodeIndexInfoExtractorWrapper::GetHeadEntry(const ScaffoldVertex&)distance_t omnigraph::Dijkstra::GetDistance(omnigraph::Dijkstra::VertexId) const [with Graph = debruijn_graph::DeBruijnGraph; DijkstraSettings = omnigraph::ComposedDijkstraSettings, omnigraph::BoundProcessChecker, omnigraph::BoundPutChecker, omnigraph::ForwardNeighbourIteratorFactory, long unsigned int>; distance_t = long unsigned int; omnigraph::Dijkstra::VertexId = restricted::pure_pointer >]bool restricted::pure_pointer::operator==(const restricted::pure_pointer&) const [with T = omnigraph::PairedVertex]restricted::pure_pointer::pure_pointer(T*) [with T = omnigraph::PairedEdge]size_t path_extend::BidirectionalPath::Length() constvoid path_extend::BidirectionalPath::PushBack(debruijn_graph::EdgeId, const path_extend::Gap&)void path_extend::BidirectionalPath::PushFront(debruijn_graph::EdgeId, path_extend::Gap)bool restricted::pure_pointer::operator==(const restricted::pure_pointer&) const [with T = 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P@cHkșp@Hc0k(, e`@xc0k5 @cHk.@% dh_@cHk' қ͛@8dHk # >9@dHkr# (@dHkڜ@H 3.@e0kE ݝ@@eHk8a\@e0k@u  @eHk q X@fHkd  @HfHkm p@fHku @fHk@q  @ gHko P @hgHkI 8@g`k D \ 8@h`k#? ni@ph0k&ç @hHk(00@hHk*)`($@0i`k,[@V@ik.X@8jk0 @(k0k228-@Xk0k4P@k0k6ĩh(@k`k8#(@l`k:(@xl`k<(ު@l0k>(@m`k@e0(`@hm`kBƫX @mHkDx@n0kFH C@@nHkH(@n`kJج8Ӭ@nkLi8d@xokNH8@pkPv8q@pkR8@(qkT8@qkV(8@HrkX`H@rkZ@s0k\z@sPk^`@u0k`pp>pPK@0uke|0*0.@Hu0ki{lh {x/240 0 0 0 644 85080 ` ELF>@@BCDEQRFOPGUVHISTJKLMNWXYZ[\^_bcefgjklmnopqrstuvwxyz{|}~HGÐf.HH#GH@ H+FÐ1Ðff.HWHH!HJ8H!H#HPH@ff.HH#GHPHf.HH#WHfBH*HB H+AxfH*^HfHH H*X^fHGHWÐfDUSHHHH:HvHUHPt;oECuHH[]ÐHGH @f.HGÐf.USHHG-HHH#^Hs HHs H1MHHH>HHHuGH<t<Tt <L AHs HH9v6HC0HKH{(tHH)HHH>HHЃHH[]fDSHH dH%(HD$1H$HBHVHHD$HL$dH3 %(u H H[USH HHFHh`HHHCHHH HhHHPHHHHH[]ÐHH#FATUSH(L`8Hh@HHHCHHH L`HHPHh HHHH[]A\Ðf.AWAVAUATIUSHHHFHPXHx8L@ H)HHHHP@H+PHHHHHH0L)HHHE1fHHHHH)HHI}L0LxHLLPHCIHx8HHXHP@H+PHL@ H)HHHHHH HP0L)HHI9sZLH+p(HHLH^HHH]LHLYf}LuL}uEHH[]A\A]A^A_ff.AWAVAUATUSHHHVH|$HBXHz8LJ H)HHHHHB@H+BHHHHJ0L)H\IE1HHcH$Xf.HH~nHHH)HHH}L0LxHLLPuQIL9,$tYIT$LJ Hz8LH+B(HL)HHHyHHHDHI1fDHD$8tLpLxHD$H[]A\A]A^A_fHD$LpLx@f.HOHAXH+A8Hq HHHHHA@H+AHHHHQ0H)HHtHVHf.HH H5H=wSHOHAXH+A8Hq HHHHHA@H+AHHHHQ0H)HHt)HHH!HZ8H!H#[HPH@DHHKHAXH+A8Hq HHHHHA@H+AHHHHQ0H)HHuH H5H=dfSHOLIXHq@LAHLH+A8HHHHHL)HHHQ0H+Q HHt+I9u IqHHH#F[HPH@HHKLIXHq@LAHLH+A8HHHHHL)HHHQ0H+Q HHuH H5H=`@HOLAXHq@HyHLH+A8HHHHHH)HHHQ0H+Q HHtH9u IpHHVHFHH H5H=rHHLHH+HHHH)HI~$LHHLIIMIL)HKIE EHH~$HBHHIHHI4HH)HH֋HGxHH+HHHH~(HB?HHIHHHHH)HHHHfDH|$H|$HLHH+HHH5HHHH;IIIIfDHHHH_H H5H=@f.HHG H9G@t =D1Ð@HfDHHwHWHÐff.HHwHÐHGÐf.HHHFHHGtH=u @D@fH?H`fDH?H` fDH?H`fDH?H`@fDH?H`8fDATUISH(HHH5HPHHH L`H0Hh HHHHC[]A\@f.USH HHHH5HHHHhHPHPH0HCHH[]ÐATUHSH?HHPH;AHP1D9t []A\H}HPH;HHPH9[]A\Ðff.HHHHHfDATUHSH?HHPH;AHPA9ĺ}[]A\H}HPH;AHP1A9uH}HPH;HHPH9[]A\HHH념@HHHHHfDHHÐ@f.SHHH6dH%(HD$1HHL$dH3 %(u HH[@f.H?H`(fDHHHHVHHWtH=uBf.Bf.H?H`xfDH?H`hfDH?H``fDHHGSHHH6dH%(HD$1HPHHL$dH3 %(u HH[SHHH6dH%(HD$1HPPHL$dH3 %(u HH[SHHH6dH%(HD$1HHL$dH3 %(u HH[@f.SHHH6dH%(HD$1HPpHT$dH3%(u HH[SHHH6dH%(HD$1HPXHL$dH3 %(u HH[SHHHHVdH %(HL$1HNHHL$dH3 %(u HH[fDSHHHvdH%(HD$1HT$dH3%(u HH[SHH H6dH%(HD$1HHP0H|$H$HtfH=uDWHH{BGH|$HtHL$dH3 %(Hu2H [HWHH{HHCfDAUATHUSLgHHHnHHEHu@H+uHHGHEXH+E8HHHHH0Hu0H+u HGHGHG HG(HG0HG8HHG@HGHHHGPHGXLL[8HC H{0Hu@HU HM0LE8MK @HH9t7H9tJHtoHH9uIPHIH9HuDIIH9HuDHH+LkhHH+HC`LHHHHH0HH+uxHChHCpHCxHǃHǃHǃHHǃHǃHHǃHǃLHHH+LHuxL)H{xLHLHHHHHLH)HHHVfDHL9t/HtAHHL9HuIrHIL9LufI{IHLuHH+HHH+HHHHH0HH+HǃHǃHǃHǃHǃHǃHHǃHǃHHǃHǃLHHHHHLMJ fHH9t7H9tEHtoHH9uIPHIH9HuDIIH9HuHǃHǃHǃH(H (HH[]A\A]HLHLHAUATIUSH0H(dH%(HD$1HH1LcLcHCHHCLHC HC(HC0HC8HC@HCHHCPHCXLkh1HC`HChHCpLHCxHǃHǃHǃHǃHǃHǃHǃH1HǃHǃHǃHǃHǃHǃHǃHǃHǃHǃHǃHǃHǃHHUHuHHH ǃ(?$HD$D$ HT$dH3%(Hu H([]A\A]LHLH߾0HHHfAUATLgUSHLkhH1H(HWHGdH%(HD$1HHGHG HG(HG0HHG8HG@HGHHGPHGXLHC`HCh1HCpHCxLHǃHǃHǃHǃHǃHǃHǃHHǃHǃHǃHǃ1HǃHǃHǃHǃHǃHǃHǃHǃHǃHHuHUH ǃ(?HH$HD$D$ HL$dH3 %(Hu H([]A\A]HHHLHLHH@f.AWAVIAUAT1USHHnHHHIL$IMI$HK%fHHHH1IHHHI9umH9uH;kuHHCIL!L!H9tHt$Ht$LL#{H#L9uaI$E1HtHL[]A\A]A^A_f. Ht$AHt$HHHLoL@H H5H=UHG0SHHHHHGHGHGG ?HG(HG0HH[]HHHf.HG0AVAUATUHSHHFHGHGHGG ?HG(Lp8HG0HX Lh0L`@IDHHHI9tI9u[H]A\A]A^IILHHHHHH@ HHH@ SHH~H5H9t?*tuHC[1[SHH~H5H9t?*tuHC[1[( AUATUSHHHO0HG HQL LhH9HHG HHHVH9HHHHCxHQH9HHCxHH9tH@@ HH9t'H}HLLHHPH9uH[]A\A]DH(HC8HPH@HS8HHC(HC HS0 HHHPH@HHHHHDHHHPH@HHHHCxH=== Stack Trace ===AWAVH5AUATH=USHXdH%(H$H1HHH@HHr{87sCH=HHHHÉIHōCL%L=Ml*DsCH=HHL9H]HtbHH=HHI$H@IH{8uHH H@0L9tHwI$HxLw LH$HdH3%(uKHX[]A\A]A^A_HHH H@0H9H/srv/scratch/marinovg/spades-cloudspades-paper/assembler/src/common/modules/path_extend/scaffolder2015/scaffold_vertex.cpp/srv/scratch/marinovg/spades-cloudspades-paper/assembler/src/common/assembly_graph/paths/bidirectional_path.hpp/srv/scratch/marinovg/spades-cloudspades-paper/assembler/src/common/assembly_graph/core/order_and_law.hpppath_size > 0path_->Size() > 0gap_len_[0].gap == 0ptr_.get() == rhs.ptr_.get()AVAUATUSHHo@L_8HGXH_ HH+OHL)HHHHHHO0H)HHHGHH+w(1ffIL@HHLP@IHMIIfM)MIO$M,$M!EeI*Me M)fI*^Hf(IIIIMIL)HKL(M!IE L)xAfH*YHH9XHHIDIIICDIfII I*XDH~MIIlfDHfHL$M!AD$H*ID$ L)fH*^f(HHH.fDMfIAM I*XffH9tD$HD$xEfH*H^[]A\A]A^IfII I*X]f.HfHH H*X ()AVAUIATUSIIHHHHdH%(H$1H{LH5HIHLH!Hu I+vH5HHsLHH$dH3 %(LuHĐ[]A\A]A^HHH9EYPath Length Weight , [], final: #, edge (length), gap info, total length, total length from startAWAVAUATUSHHdH%(HD$81HG@H9G tIH5HLH LH5HH5L1HC H9C@t HHLH5HH5LfLZ(H5HH5ALH5LHCXH+C8HHHHHC@H+CHHHHS0H+S HHe1Lt$fHHHK8HHH)HHHHHLHT$Ht$LH5HIHHH+HHHSHH5HHHH)HHыxHH5D8@ |$ LL$D$DLH5HIt$LH5HIt$ LH5 HIt$LH5HIHKxHH+HHHeHH?'HHHH)HHH0LH5HIHC H9C@HHKxHHH+HHHHH?IH4IIM)J4H;MHC H9C@HHKxHHH+HHHHHH?HHH)H HH+HLH5HH|$IFH9tHSXH+S8HHC@H+CHHHHHHHHC0H+C HHH9sSHLH5HIHK HsHH+C(HHHHHHHD$8dH3%(HH[]A\A]A^A_D11SfH4HHHuHHHHHHHHHHHHH1HH[HHHZH`H|$IHL9tHA ATUISHHHHdH%(H$1HsLHsHHH$dH3%(Hu HĐ[]A\HHH /;{USHHHHtfDHHHuHEH}1H0HH}HEHEH9tH[]fH[]ATIUSH?HtAID$HI\$(HhH9vfDH;HH9wI<$[]A\f.[]A\ATIUSH?HtAID$HI\$(HhH9vfDH;HH9wI<$[]A\f.[]A\HATUHSHHHtHHt7HHL`I9vH;HI9wHH}h[H}]A\HATUHSHHHtHHt7HHL`I9vH;HI9wHH}hH}[H0]A\LHH~LNLFLH)HHHx\HH~2MHH)I8HL@LHHxHLHfDHHxLHI L@HHHHH=SHtot+[fGPWuHPC PS HPC uHH[H@AVAUIATUHHSHH_HHHE@HUHEH)HL4M$M9s"LfHHI9wIALu(IHHUHUHE ID$HEHID$HIHE8Lm0HM@[]A\A]A^H}H_HL9vI>IHHH}HEHEHH%4e}AVAUIATUHHSHH_HHHE@HUHEH)HL4M$M9s"LfHHI9wIA?Lu(HHUHUHE ID$HEHID$HE8HJHM@HE0[]A\A]A^fDH}H_HL9vI>IHHH}HEHEHH%4e}AVAUIATUHHSHH_HHHE@HUHEH)HL4M$M9s"LfHHI9wIALu(IHHUHUHE ID$HEHID$HIHE8Lm0HM@[]A\A]A^H}H_HL9vI>IHHH}HEHEHH%4e}%P ;?QCR` fAWAVIAUATUSHHHGHHw(H_II)IIK 'H< H9vEH)HHJ HEH]HHIH)H9H9HL9LHCLlHI9J<T$ H $LH $T$ IHu(H)HHJHEHEHLHPH9t H)HH}ILuLmHH](HEHHE JD#HEHHHE8HHE@H[]A\A]A^A_DH9tLH)HAWAVIAUATUSHHHGHHw(H_II)IIK 'H< H9vEH)HHJ HEH]HHIH)H9H9HL9LHCLlHI9J<T$ H $LH $T$ IHu(H)HHJHEHEHLHPH9t H)HH}ILuLmHH](HEHHE JD#HEHHHE8HHE@H[]A\A]A^A_DH9tLH)HAWAVIAUATUSHHHGHHw(H_II)IIK 'H< H9vEH)HHJ HEH]HHIH)H9H9HL9LHCLlHI9J<T$ H $LH $T$ IHu(H)HHJHEHEHLHPH9t H)HH}ILuLmHH](HEHHE JD#HEHHHE8HHE@H[]A\A]A^A_DH9tLH)HHGH;GtHHtHHHHWÐATUHSLg(HL;'tUID$HC(HPH@HS(HHCHS HHHSt HUH[]A\Lc(gap_len_[0] == Gap()AWAVIAUATUSHHE(ExdH%(HD$81A@$A@ D$HH!HG H;G(Hn8Lf@%HHtHhL`IV II+H\$IHHHHII+HHIH)HHIH\$1HHHD$HD$DEu D@EcHt$1HHD$0HPx zHt$1HL$HD$4$D(DxH IpI9kHHtAAAAIIVHINxH!I~hH@ H+BI9Ht IcHHHHD$$Dl$MM;D|$D$D$D$t(fDI}ILHLIHM9uHD$8dH3%(gHH[]A\A]A^A_xx fDH_8H;_HCIF8HPH@IV8HIF(IV0HHIV HLfDII;HT$HT$HBIHPH@IHIIHHIPHǀǀƀ/HI^8IIGH H5H=#!data_.empty() || gap == Gap()AWAVAUATIUSHHIH(dH%(HD$1HG@H9G `HKPHQH9HtH(L`HHC@HHHQH9Ht AoEHHHSHHH!HHLp HCxL+rIcUL@HHH9H9uHHQH97HtL0HHAoELL;)$t-II}MHHLIHPL9uHD$dH3%(SH([]A\A]A^A_f.HHHMDD Eu DAEtWHC@H;C |AuuAMuAUu A} YH H5H=fyuy u뚐LsXHKLH+CHH)HwH{1ҾLsXIFHC@HtH(L`HCXHPH@HSXHHCHHC@HSPf.LHLH+HH)HwH1ҾLIFHHt AoEHHPH@HHHHHhLHKpLH+ChHH)HwH{h1ҾLIGHHtL0HHPH@HHHHHRAUATUSHHHHHIH9L,LL1HILU0HMHEHt[E1LMfHHHHHHt::operator==(const restricted::pure_pointer&) const [with T = omnigraph::PairedEdge]St11_Mutex_baseILN9__gnu_cxx12_Lock_policyE2EESt16_Sp_counted_baseILN9__gnu_cxx12_Lock_policyE2EEN11path_extend12PathListenerEN11path_extend17BidirectionalPathEN11path_extend14scaffold_graph19InnerScaffoldVertexEN11path_extend14scaffold_graph12EdgeIdVertexEN11path_extend14scaffold_graph10PathVertexESt19_Sp_make_shared_tagSt23_Sp_counted_ptr_inplaceIN11path_extend14scaffold_graph12EdgeIdVertexESaIS2_ELN9__gnu_cxx12_Lock_policyE2EESt23_Sp_counted_ptr_inplaceIN11path_extend14scaffold_graph10PathVertexESaIS2_ELN9__gnu_cxx12_Lock_policyE2EEGCC: (Ubuntu 7.5.0-3ubuntu1~18.04) 7.5.0zRx 0DXl$^ $?AAJ mDA   4H\p  4Af I C4Af I C  ( < Pd$xAAZ DA OAG0} DA 8BBA A(G0 (A ABBF $WAAL FAA((ePAA OABHTdBBB B(D0A8G@B8D0A(B BBBHBBBB B(A0A8GP 8A0A(B BBBC LBBI B(H0A8L?n 8A0A(B BBBD <xTTAY N tAc L dD  G @BBB A(A0D@, 0E(A BBBD   4H\p.     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@HtH@H$IH$L$HDŽ$L$HDŽ$DŽ$H$H$HL$Ƅ$Ƅ$H$H$H$H$H$H$H$$$H$H$L$L$H$0H$(HDŽ$LHDŽ$ H$8LI~IIH9H$ I~HcPHHHHHH#He1HILH$Ƅ$HIH$H$H$H$HDŽ$HDŽ$L$H$HL$Ƅ$Ƅ$H$H$H$H$H$H$H$$$H$H$LH$0H$(H$8HDŽ$HDŽ$ L$LI~XHHuH90 H$I~XHcPHHHHHH#H1HI~PH$Ƅ$HXMnHHD$0pD$H$HII!IP8HH!@t HH8H!HHHH!HRH!HRH!HHƒu HHHu5@YI@@H|$0LH$H$DŽ$ H$Lx LHLHDŽ$HDŽ$ H$H$(H$0L$8H$(H9Hc$0H$8HrHH$Ho$LLIIH9.LH$IFXHD$LH|$IIH9kAw9p^H$Lx LHLHDŽ$HDŽ$ H$H$(H$0L$8H$(H9Hc$0H$8HrHH$Ho$LLII7H90wH$H;$$@8$$8$^H$HtHD$(HtHHHt$ HHCH`HhH$HtHH5HP H$Ht$HHH^tH|$xHtH$PH|$H$(dH3%(HD$.H8[]A\A]A^A_@@HE@H$HD$PHt$ D$OH$HHD$8L$L$MID$MDfDHE@H$Ht$ HD$PD$OH$HHD$8L$L$MH=ID$uDAD$HLhHHMHL$`IE`CAw9pfDH$89HvjHH$w@HGAO9H|fDH$89Hv!HH$.@HPH+HH6D@g@@@@1 DAF8fDHD$(@fM9HKAO9H4fDIEMmMHD$`tMIE@HCXHD$hAEHt$`H In Mn0INIv(AE@Hd$(In IF0IFHD$`Af8InHIF(HIF@HD$XIFPHHHCHHHH+HxHHtHXHtHPHtHhH$HtHD$(HtHHH HCH|$hH$HtHHH$HtH|$xHtH|$H$PHH H5H=}HHH$IL9tLXL$LI|$H5H|$I|$HH5HIH|$(HLL$It$HLL$LH3HH$IL9tLHD$0@fAFUDHt$ H$HHHHH@ H9H=L$@H$HCH$LD$ HL$HT$HHHD$PH$HHtL$ H8IHt!HL$ H$(H;$0 Ht.H$HH$HHFtH=,@HL$ H$(L$HLLLd$ LHL$HT$MH|$hHH$HHtH8IHtH H$(H;$0% Ht7H$HH$HHFtH= @H$(HH$(H$HtH$HtHEH|$Hp(H$HEH|$(H$Hp(H$H$H8IHtHH8IHtHH$H9$H$(L$ HDŽ$@HDŽ$HHDŽ$PIM)LHHHH9L LH$(L$ IL9H$@H$HL$PtaHL@FHHH9t3HtH2H1HrHHqtH=uHFHH9uIL)HHDLl$ HT$L$Ht$HH$HLLD$H|$`HP(H8HHtHH8HHtHH8HHtH7H$HtHH$HtLH|$HHH$uoH$H9$tmH$HHQH9uH$H$HHPH@H$HH$H$H$tHHP(DH$HtBH$H$HXH9v$f.H}HH9wH$H$HtH|$0LH$H|$@H|$8H$pH$HtH$HtH$8dH3%(D$HH[]A\A]A^A_CH$H$KTD$Qf.L$L$ LI|$H5M}L$It$LL$LHJLH$IL9tLfDL$LI|$H5H$I|$IEL$It$LHD$L$H|$LHVH$IL9tLH5HIN@H$HT$(H\$@Hl@H$`HT$H\$8Hd@AGD@H$(fDL$LI|$H5HL$HI|$HAXH+A8Hq0H+q HHHHHHA@H+AHHHHL$It$HmLL$LH`HH$IL9tL=DL$LI|$H5HD$HI|$H L$It$HmLL$LH_HH$IL9tLjL$LI|$H5H$I|$IEL$It$LHD$L$H|$LHWH$IL9tLIH$Ht$xHHD$gL$ HT$PLjfDL$LI|$H5L$It$HmLL$LHaHH$IL9tL?L$LI|$H5IEL$It$LHD$PL$H|$PLHPH$IL9tL@HT$hL1OHLH$HtHHH$HtLH|$H|$H$HtH|$0LH$H|$@H$pH|$8H$HtH$HtHH$HHtHH$HHHtH|$0hH`H`HL$ H$HHtL.HL$ HLH$HD$H$IHL9tHLH$IHL9tHLHH$IHL9tH$HHHtH$HHH$HuHL[H$IHL9tH8H|$`0HH$HD$HyH$IHL9tLL$ KHHHyH$HHrrHHH$HDŽ$HDŽ$HLH$IHL9H$IHL9tH$HHHtL$ XH|$ H4HHjfDUHAWAVAUATSHHHhdH%(HE1H8HtHIjHCHPHCHXHHPLhLpHH`HXLI^PMn0IN(H`MH=HhAELr HrM HhAFHLHL_HHWLgAELHLAFHSLPMLHH`HXHLL=ZHH1LLHHHHDžHDžHDžHHHL)HHHt,HH9V HHLHHL9HHH9 HLHhfFHHH9t3HtH2H1HrHHqtH=uHFHH9uIHhL)LHH|HL)HHHH HHLH(H L H0HH8LHHDžPHDžXH@HDž`t)HH9 HHLHL9HPHXH`tlHLHhFHHH9t3HtH2H1HrHHqtH=uHFHH9uIHhL)HHDHXHH LHDžpƅxHDžƅHhHCxI|$(DžHDžHHHHDžDžHHHHDžHDžHHDžHDžHDžLH`LHxHHtHHtMtLMtLHxHtHHtH8IHtHHXLHhLHpHHHHtH8IHtHHPLHhLHpHHHHtLLsxHDžHDžHDžM91HDžhAfDHt AoE HhLHhHL9ItLHHhH9uHhIU LHLHhL9IuLL;huIL;hHI9D$uH`LCtHHhhAEIvMv MAFHhHLL_HHWLgLHAEINHLtfL@LI}H5HCLHLHXLI}HH5HIHCH HHHPHHLH(HtHHtL IuI$LL LH]HH IL9tLDHHhHhHtH1HHhHHHH{pH{0LHH]dH3%(hHe[A\A]A^A_]LhMr IzM~H5HAFMJHIRMbHHDžLHHHL;INDL@LI}H5IL IuLHHL HHLHcH IL9tLfL@LI}H5IL IuLHXL HXLHeH IL9tLHhHHDžHHDžLNHHVLfLHI11 First length: Second length: First size: Second size: Intersection: Score: EdgeSplitPredicateFirst second: First third: First: Second: Third: Second third: First fourth: read_length_ > g_.k()CompositeConnectionPredicate is LAGapAnalyzerHammingGapAnalyzer short_overlap_threshold basic_overlap_length First half of start: Second half of start: First half of end: Second half of end: Next conjugate check failedPrevious check failed.Path container size: Coverage map size: Made grow step, iteration Found targetSimpleSearcherChecking vertex: Visited: Edge restricted: PassedId: Distance: Passed threshold. ProcessingProcessing finishedTransitiveEdgesPredicateChecking edge (Found another path, falseTrueEdgeInTheMiddlePredicateSecond barcodes: Shared fraction: edge DistanceCounted(vertex)Start composite checkInitial path id: Initial path size: Constructed path containerConstructed basic extenderStart: Target: Could not find supported pathCreated dijkstraDijkstra finishedATUISHHH^dH%(HD$1HHHHP(H$HtHHPH<$HtHP ID$H}HEAD$ HE ID$HEtHP HH]tHHPHHP HD$dH3%(u3H[]A\HFHGF G HFHGHHtHP HHH<$HHtHP HHP HHHu 4F~ATUHS@L%HHHHHC8H}HL#HCHH{tHPHE HuH{HC HE(HC(E0C0HHH8HCH8HC8HHXH[]A\HHL#H߾@HHHfATUL%SHHxH@HHHHHC8H}HL#HCHH{tHPHE HuH{HC HE(HC(E0C0HHH8HCH8HC8HHXH[]A\HHL#H߾@HHHOV/srv/scratch/marinovg/spades-cloudspades-paper/assembler/src/common/sequence/sequence.hppto >= fromto <= size_H(H9roLNI9IHLFI)Ҁ~u'HMLWHGLGtAHH(H)LWGLMLGHuHH(fDH H5H=~@HL$HT$Ht$H<$Ht$HL$H<$HT$LNI9>H H5H=USHGH-HHHvHHsH1PfDHHH>HHHuGH<t<Tt <L AHsHH9v>HCH H{tHH)HHH>HHЃfHH[]ATUISH-H0HvHdH%(HD$(1HCHH$It$H1O@HHH>HHH4$GH<t<Tt <L AIt$HH9v=ID$I $HA|$tHH)HHH>HHЃ@HT$H4$HH<$HH9tH\$(dH3%(Hu H0[]A\H<$HHH9tH5/srv/scratch/marinovg/spades-cloudspades-paper/assembler/src/common/sequence/range.hppend_pos >= start_posHGHH9rH)SHHCHH9rH)[H H5H=1HG@H9G :AUATUSHH;GHHWJL`LhHLLL!HH HH+BM9LHcJHHHLKHHGxf.H)HH9H9uH9HHM9HVILH}@H;}HHH}@HH;t%fDH;HLLHHPH9uH[]A\A]fDIIH]DfDHHRHfHGXH@LLDHEXHPH@HUXHHEHHHE@HUP'DHHLLHPH@HHHHM9HHLHHPH@HHHHHHpATUSHHHHCuSHCH;C0taHK H(HQH9uH{HC(HHPH@HS(HHCHCHS tHEHP(HCH;C0u@H;Ht@HCHHk(L`I9vH}HI9wH;[]A\f.[]A\HHHFHHGtH=u @D@HHHFHHGtH=u @D@USHHHGHWH9r*H)HUHHEH9rOH)H9HBH[]fDHEHUH9sH H5H=HEHUH9sR1: [, ]; R2: []; match_cnt: USHH5HHH3HH5HHHsHH5HHHsHH5HHHsHH5HHH5H Hs HH[]Hu`(@` C_9EYx'ej  '-OG R 'I1-a;%; Ql7-DP  W(    % *   *   /66,0  .4   :   !  ) ))!I!      +  B(h'Qer  (   =   )   (   =  /_66%4e}%4e}%4e}   Sa!h    Wx          T    'N2-Glk,Q; S    *   ^ o=Y, .     &     ,  #n-eG<a`1 G   + psJ!  ~   2   0UZ   J  (*J+--&0q  B#     #   0 PU  ! " =   ).Y;      Q  C.5{E* -  ?*   (  F9*&  '  %   ;        ='ig/;Q\U  -rbc :   :::C)))6?QG 8  =& -QV  !1 G <    UnY! X  :  lxt?Q R 3   9!`/D?Q5C U  "%@""""n ?Qz J  :     > !     x  @   < )FMbbo fX\   :   4   +    /w/  - -  &!/q0   7 0   0:)00j0S  N  N4du'\W.c^.Jf]+!z "  5         _  K7C   C     2   m  a            DR0!b  !   F   !   *r    (q(IkC          "O*!| !v?O.Ma1 G*$=#  =       $9!5!))_=bqn8*-0 Z ;         7 XA]?6$$%%$ $" %#*!`525m222226 6 6 5 5 !523533445_3353335`45754!45 8 5%8&5&5'57'7(2(5)5)b0*7*5+47+7,5,57-7-5-%5.7.7/4/#6/70426668759gzY/o/   - - &!/q0   7 0   0:)00j0-! !  !  (""UIHHHATSIHL`Lht#)p)M)U)])e)m)u)}dH%(H81HFH HDž Dž$0H)HEH\$H(H@HHH0AIT$LHI$HcHH8dH3<%(Lu He[A\]ATUSHoHH9t&IDH;HCH9tH H9uI$HtH[]A\f[]A\ ()AVAUIATUSIIHHHHdH%(H$1H{LH5HIHLH!Hu I+vH5HHsLHH$dH3 %(LuHĐ[]A\A]A^HHHHVHHHWw fDUSHHHHHUHEHH3H[]uHFF HATUHSHtBt-thHFF H[]A\HHHL' HHLAD$H+E[]A\DH.Ht"H}vH}Ht HHDHH5HxH9t?*tuHEHNHH HAUATIUSHH_Hu%}DmHLMt]HkL#HtH=uϋEPUuHEHPE PU uHEHPHLMuIEI}1I0HI}IEIEL9tDH[]A\A]DHEHPE .HEHPu@H[]A\A]AUATUSHLgHI9tnIDmtyHI9tPHkHtH=u݋EPUuHEHPE PU uHEHHPI9u@I]Ht7HH[]A\A]DHEHPE f.H[]A\A]H9AVAUATUHSLnHIH?HEMI)H)LHHIIHH9r`HUJ'II)LHIH9M~%foHHGSWHuHE[H]A\A]A^@E1Ht"H H9LH}IL9t:HCLI)IKtfDHtoHKHJHHH9uHtK&LuHEHEhMJ4 ~%oHHGDCDGHuL9%HNI)IJ| HHtoHvHrHHH9uHEVerification of expression '!filling_seq_' failed in function ''. In file '' on line . Message 'Filling sequence specified'./srv/scratch/marinovg/spades-cloudspades-paper/assembler/src/common/modules/alignment/gap_info.hppAUATAUSHHdH%(H$18u,H$dH3%(Dm Hĸ[]A\A]H\$ HH{H5H{H5 H{H5H{H5kH{H5 H{H5bH{H5 H{H5 HIH5LH5LIHsLHT$H4$H=HH<$ID$H9tHsLHT$H4$H=HH<$IL9tH=H=}8uH=H H5H=H<$IHL9tHHHHHGHGHHGG HG(HG0G8AUATUSHLgHI9tnIDmtyHI9tPHkHtH=u݋EPUuHEHPE PU uHEHHPI9u@I]Ht7HH[]A\A]DHEHPE f.H[]A\A]AUATUSHLgHI9ImH@I9tlHk HtH=tymHkHtH=uEPUuHEHPE PU uHEHPH@I9ufI]HHH[]A\A]EPUuHEHPE PU hHEHPYHEHPE HEHPi@HEHPE f.H[]A\A]AUATUSHLgHI9tnIDmtyHI9tPHkHtH=u݋EPUuHEHPE PU uHEHHPI9u@I]Ht7HH[]A\A]DHEHPE f.H[]A\A]AUATUSHLgHI9tnIDmtyHI9tPHkHtH=u݋EPUuHEHPE PU uHEHHPI9u@I]Ht7HH[]A\A]DHEHPE f.H[]A\A]USHHHHtfDHHHuHEH}1H0HH}HEHEH9tH[]fH[]HHЃuHuDHBH+HAWAVAUATUSHHdH%(HD$x1HH!H+H!HHHǃu HAHHt(1HT$xdH3%(HĈ[]A\A]A^A_HzILL$LD$HL$L!HuHC8L!HL!LaM!LHuI|$L!HtH|$PH|$XHD$PHL$LD$LL$HL!L#hLr8Lz@IU8Mm@Hs8IL!H>L!HGHH|$@LHD$HL!LHH9L\$0H|$8iH>HH!H!HwHHt$HH|$@H8H@H9H|$0HD$8Hl$@H|$0LL$ LD$HL$HHT$xHL$LD$HT$LL$ LiHM0MxHI#D$HHHu HHHIL$7HL!HB@H9AHR8HD$HHT$@tEHL!HP8H@@IIAHL9uĸf.HxH+8HHHHLL$HL$HL$LL$uL0LxHPLhNHl$@H|$0LT$(LL$ LD$HHL$HT$HT$HL$LD$LL$ LT$(tL1LyIMhHs8L!+HHBH)HSearchingMultiExtenderloop detectorloop detected/srv/scratch/marinovg/spades-cloudspades-paper/assembler/src/common/modules/path_extend/path_extender.hppAWAVAUATIUSIHHdH%(H$1H8HtHH:A$HE@H9EHHPHpHI$HxH8HHHLt$ LI~H5IIvHmLL $LH;HH<$IL9tL#fDIuIUH-H$dH3 %(Hĸ[]A\A]A^A_Lt$ LI~H5IIvHLL $LH7HH<$IL9tLOfHEXH@HRH<$IHL9tLHHAWAVIAUATIUSHHHOHHI)H)HHH4IH9LH$H]HMMH$III)MtHII9t LHLHL$L$HL$L$IODM)L9tLLLIMHtHLmLuL}H[]A\A]A^A_L<FfDHH9-HuME1E1>H=SHtot+[fGPWuHPC PS HPC uHH[H@HHHHt HHHHGH Ht DHSHHHHGH HtH߾H[HSHHHHtH߾([HHHHt HSHHHHtH߾[HHHHt HSHHHHtH߾([HHHHt HSHHHHtH߾0[HHHHt HSHHHHtH߾0[HHHHt HSHHHHtH߾ [HHHHt HSHHHHtH߾0[HSHHH0HtH{ Ht [D[HSHHHHH9tH{xHH9tH{(HtH{Ht[[AWAVAUATIUSH8HG0HO(HW HoHD$HG8HYHT$ HL$(HD$HGHH9HD$L3M@Al$IM9tZMfMtH=uAt$~A|$uI4$LVAt$ ~A|$ uI4$ILVM9ufDHH9\$qHT$H9T$(H;l$ tyHD$ H]H)HLtmlL9HtOHHmHtH=u֋EPUuHEHPE PU uHEHHPL9uHT$H9T$HL$HD$HYH)HLtmI9H\$tVHHD$HhHtH=uϋEPUuHEHPE PU uHEHPI9H\$uI}HIEHI](HhH9v@H;HH9wI}H8[]A\A]A^A_I4$LVAt$ GHEHPE iHEHPE HD$H9[H]H)HLdHH}HtL9HuI}H,H8[]A\A]A^A_HHwHHHGHBHHGH=u0@I@O IHHG0HO(t@Ht9f.@IpO IHHw0HFHO(tHO(HuATUIS(HHHHHEHHEHHEHHEHCHHE tH=t{@HEHP HH5I|$0ID$(Il$0HtF[]A\DI@O IHHG0HO( H=H&fD[]A\@I|$0HHtI|$HtHBarcodePutCheckerAWAVAUATIUSMHHdH%(H$1H8HtHI2H8IHtHueHl$LLHH{HH|$HtD$D$H$dH3 %(KH[]A\A]A^A_DHl$@HH}H5HSHH}L!Hp H+rM>Lt$ HuLLL$ LHLH|$ IL9tHfDHl$@HH}H5H}LM>Lt$ HuLLL$ LHLH|$ IL9tHBHHHH|$ IHL9tH|$HHtHHHGH Ht HSHHH0HtH{ HtH߾[HSHHGH@HtH{(Ht [@[HSHHGH@HtH{(Ht [@[HSHHHHH9tH{xHH9tH{(HtH{HtH߾[HSHHH HtH{Ht [D[HSHHH HtH{Ht [D[HSHHH HtH{Ht [D[HSHHHXHtH{HHtH{ HHHtH{HtH߾`[HSHHH HtH{HtH߾X[HSHHH HtH{HtH߾X[HSHHH HtH{HtH߾X[HSHHHXHtH{HHtH{ HHHtH{Ht [[HSHHHHGHHtH{xHtH{hHtH{(Ht [[HSHHHHGHHtH{xHtH{hHtH{(HtH߾[ATIUSH?HtAID$HI\$(HhH9vfDH;HH9wI<$[]A\f.[]A\ATIUSH?HtAID$HI\$(HhH9vfDH;HH9wI<$[]A\f.[]A\HATUHSHHHtHHt7HHL`I9vH;HI9wHH}h[H}]A\HATUHSHHHtHHt7HHL`I9vH;HI9wHH}hH}[H0]A\LHH~LNLFLH)HHHxTHH?~2MHH)I8L@LHHxHLHfIHxLHL@H@HHHLHH~LNLFLH)HHHx\HH~2MHH)I8HL@LHHxHLHfDHHxLHI L@HHHHAWAVIAUATUSHXHRXI+V8dH%(HD$H1IF@I+FHHt$HHHHHHIF0I+F HOXH+O8HHHW@H+WHHL HHHHH HW0H+W HHI9HHG Hl$ 1IHD$IF HD$DHt$HHHD$ Ht$HLhL8HD$HHT$ L;jHL!M!L9t)H H5H=DIVXI+V8HIF@I+FHHHHHHHIF0I+F HHH9EfD1H\$HdH3%(uHX[]A\A]A^A_/srv/scratch/marinovg/spades-cloudspades-paper/assembler/src/common/modules/path_extend/weight_counter.hpppath.Length() > 0AWAVIAUATUSHHHdH%(HD$81HF@H9F VHHEIF I9F@nLH]IFXI+F8HHHHIF@I+FHHHIV0I+V HHHD$Mn E1HHD$ZfDfH*^IVXI+V8IF@I+FHIHHHHHHIF0I+F HHI9]H|$LL$LcHD$fI$$HH!AH*HA H+BaHfHH H*XLfDHD$8dH3%(u.HH[]A\A]A^A_H H5H='AWAVIAUATUSHXHN@Hv dH%(HD$H1H9&HIVXI+V8I+NHH\$ Mn IH\$HHHBIV0HHHH)HDM $HLLAy+H\$HdH3%(HX[]A\A]A^A_H|$HcLHʉD$HL$HT$ HL$LH|$HHH!L8HT$ I!HIWH!H!H@8HH!IHH!AHHHpD$Hu0A@16L:LRM9tIH!Hz8H!H8H!H?H!L_LOI9I!H!I9t.fDH H5H=@IW@I9bH H!Hy8H!Hw8H!H>H!L;_HwH!HI9uHIII=AWAVAUATUSHxH7dH%(HD$h1HFXH+F8HV@H+VHHHHHHHV0H+V HH1Hw%H\$hdH3%(_Hx[]A\A]A^A_fHl$@HH HIHH3HD$@HL HFXH H+FHHHHHF H+F(HHHVH+HHTHD$@L0H@MHD$M!I?L!Ht 1=fIG8M!L!HL!HAHIHD$(HL$ IL$I4$H9Ht$HL$uHt$ H|$tID$8L!L#(IMIEHL$@HD$HIWIH9HL$0HT$8sH|$0H^HT$H;LAWAVMAUATIUSIH8L$H|$8Hl$`HT$LLl$0dH%(H$(1HHEHHHD$`I\$ID$H$H9IEHD$HD$@HD$ H$HD$H$HD$(HT$hHt$`H|$HS H|$ Iw IMnHD$@H|$LHHHH$H$LH$H;|$(tHt$HHH9$HlHD$0H|$8HpH|$`HH9tH|$0H$(dH3 %(HD$8uH8[]A\A]A^A_HT$H$HHH9tH|$`HH9tH|$0HHHPath Weight [], final: #, edge (length), gap info, total length, total length from startAWAVAUATUSHdH%(HD$x1HG@H9G IH5HLH LH5HH5L1HC H9C@t HHLH5HH5LfLZ(H5HH5ALH5LHCXH+C8HHHHHC@H+CHHHHS0H+S HHHC 1Ll$0LsxHD$(HD$PHD$ HHHHHH)HHыxPH5@ |$ T$$LL$D$t$LH5HIt$ LH5HIt$$LH5 HIt$LH5HILLHHD$0LH0H5HIHC H9C@HHLLHD$HT$0HD$H;HC H9C@HHLLHD$HT$0HD$H+HLH5HHD$H|$PHH9tHSXH+S8HHC@H+CHHHHHHHHC0H+C HHH9HLH5HIHCHt$(HLHD$HD$0Ht$H|$HHHHT$XHt$PLH5HIHHH+HHH[HHHZ@HD$xdH3%(uGHĈ[]A\A]A^A_fD11@fHHH 1\HT$H|$PHHH9tHpath.Size() > 1 General loop with start e1 e2 out cov in = cov out cov cov e1 = cov e2 = fwd_count = back_count = result = AWAVMAUATIUSLHH(LNXH~@dH%(H$1LFHHL$(LH+F8HL)HHHHHHV0H+V HHHI9HGLgH|$PHH HD$8HL$PHfHAH9HD$0IEH!H#W8HH0HqHH@BHR H)H9H*HGH fH*^IL!ËCL$ fH*HC H)H9HGHfH*^HI!IEHHPAD$D$ -XL$@YD$fH*ID$ H)fH*^D~%5^D$f(=XAXf(D$fTf.fHfH!ŋEH*HE H)xfH*^f(^T$XAXf(T$f(fTf.L$1\$\\$P]f.vKf(XAXf(f(fTf.  f.\HH,H1H8IHtHHH$dH3%(H([]A\A]A^A_fDH,ffUH*f(fT\f(fVT$fH,ffUH*f(fT\f(fV\$df.H,#fDH,ffUH*f(f(fT\f( fVf.DH$HHD$HHD$HH5HxHD$HHt$0HxH5HHD$0Ht$8H|$0H5HHD$0Ht$(H|$0H5HHD$(H|$(LH5 HID$ LH5 HID$@LH5HID$LH5 HIAD$fH*IEHID$ H+BEfH*^LH5 HIEfH*IEHHE H+BfH*^LH5 HHD$HH5HHD$HH5 HHHHHD$HHl$pM&HHpLL$pLHbLH|$pHH9tH|$HaHfHH H*Xsf.HfHH H*XfHfHH H*XEfHfHH H*XfIyHSHt$Ht$LNXH~@LFHLH+F8HL)HHHHHHV0H+V HHHH H5H=L@HfHH H*Xf.HfHH H*XH|$pHHH9tH|$HHHLHH~LNLFLH)HHHx\HH~2MHH)I8HL@LHHxHLHfDHHxLHI L@HHHHAWAVIAUATIUSHHHOHHI)H)HHH4IH9LH$H]HMMH$III)MtHII9t LHLHL$L$HL$L$IODM)L9tLLLIMHtHLmLuL}H[]A\A]A^A_L<FfDHH9-HuME1E1>AUATIUSHH_Hu%DmHLMtxHk0L#HtH=mHk HtH=uEPUuHEHPE PU uHEHPHLMuIEI}1HIEIEH[]A\A]EPUfHEHPE PU JHEHP;HEHPE HEHPO@HEHPE SHH0H{H9t [@[HAUATIUSHHHsLHk(LcHtH=t$mt]HLMuH[]A\A]fEPUuHEHPE PU uHEHPfDfDHEHPE HAUATIUSHHHsLHk(LcHtH=t$mt]HLMuH[]A\A]fEPUuHEHPE PU uHEHPfDfDHEHPE HSHHHHXHH{xHsPH{@H{H߾[HSHHHHXHH{xHsPH{@H{[Ht3ATIUSHHsLHkHHHu[]A\@HSHHGHHtHsXH{HHs(H{[Ht3ATIUSHHsLHkHHHu[]A\@ATUHSH_ IHHt0fDHkHtHuH0HHHuIt$XI|$HI|$ HtDHHHuID$I|$1I@HI|$ID$ID$L9t[]A\fD[]A\HATUHSHHHtHHtHHtHH;HHEt]E1fDLHHH;HtHP(H{HHtHP(HHIHCH)HL9wHHtH]PHHE0Ht2LcMtIt$L0LHHuHH}xH}PHt@HHHuHEHH}@1HH}@HEpHEXHEPH9tH}(Ht[H ]A\HATUHSHHH;t[E1@LHHH;HtHP(H{HHtHP(HHIHCH)HL9wHHtH]PHHE0Ht2LcMtIt$L0LHHuHH}xH}PHt@HHHuHEHH}@1HH}@HEpHEXHEPH9tH}(Ht[H]A\ATUHSH_ IHHt0fDHkHtHuH0HHHuIt$XI|$HI|$ HtDHHHuID$I|$1HI|$ID$@ID$(ID$ H9t[Lx]A\HATUHSHHHtHHtHH;HHEt^E1LHHH;HtHP(H{HHtHP(HHIHCH)HL9wHHtH]PHHE0Ht2LcMtIt$L0LHHuHH}xH}PHt@HHHuHEHH}@1HH}@HEpHEXHEPH9tH}(Ht[H]A\HATUHSHHH;t[E1@LHHH;HtHP(H{HHtHP(HHIHCH)HL9wHHtH]PHHE0Ht2LcMtIt$L0LHHuHH}xH}PHt@HHHuHEHH}@1HH}@HEpHEXHEPH9tH}(Ht[]A\D[]A\HATUHSHHHtHHtHH;HHEt^E1LHHH;HtHP(H{HHtHP(HHIHCH)HL9wHHtH]PHHE0Ht2LcMtIt$L0LHHuHH}xH}PHt@HHHuHEHH}@1HH}@HEpHEXHEPH9tH}(Ht[]A\D[]A\HATUHSHHHtHHtHHtHH;HHEt]E1fDLHHH;HtHP(H{HHtHP(HHIHCH)HL9wHHtH]PHHE0Ht2LcMtIt$L0LHHuHH}xH}PHt@HHHuHEHH}@1HH}@HEpHEXHEPH9tH}(Ht[]A\D[]A\HGHUSHoHHH DH@HtHP H9 rHPvHHHuH1[]HpHu-DHHvHtH~ H; rHvHufDHtHr H; w6HHRHuH9t1HHH9uHH[]DHR1Ht3ATIUSHHsLHkHHHu[]A\@HtCATIUSHHsLHs@HkH{0HHHu[]A\HSHHHHtHHtHHHH{pH{XHtH߾[HSHHHHtHHtHHHH{pH{XHt [fD[Ht3ATIUSHHsLHkHHHu[]A\@Ht3ATIUSHHsLHkHHHu[]A\@Ht3ATIUSHHsLHkHHHu[]A\@Ht3ATIUSHHsLHkHHHu[]A\@SHHHHHHsxH{h[AUATIUSHHHwI$I$I$I|$pMl$8I\$0HID$(I9ulmtyHI9tPHkHtH=u݋EPUuHEHPE PU uHEHHPI9u@I\$0Ht.HH[]A\A]@HEHPE fH[]A\A]HHHH!H9thH6HHH!H9thHHHH HHHHHH HHHHHH)HH)H9HHGH@H1HtDH1Htmath::gr(single_threshold_, 0.)Threshold value not initializedAVAUATUISHdH%(H$1ID$HD$ I@HHD$(H=@HHD$HBHHD$t@Lt$ Ll$LMLH|$HtH|$(HtL$HLLHD$AL$8I$L$ ufL$f.H\$PHH{H5H{H5H{H5H{H5H{H5 H{H5jH{H5 H{H5 HHH5HH5HHl$0HsHHT$8Ht$0H=HH|$0HEH9tHsHHT$8Ht$0H=HH|$0HH9tH=H=AD$8LLHD$D$ D$fD$f.HH$dH3%(H[]A\A]A^Ð@HHRHHD$HT$HBaX@HHD$HBHHD$:H=(HH H5H=H|$0HIH9tHLI|$0HI$HtI|$HtHH|$HHtH|$(HtHHIvAWAVHAUATIUSIHHMD$H?LI)H)HHH H IH9LHT$I<$MD$HXHT$IIMtoHBAEIEH9tIHGHHLH)HHIDHHtoHJHKHKHH9uH0L9tIHHH}HEHEHHAVAUIATUHHSHH_HHHE@HUHEH)HL4M$M9s"LfHHI9wIA?Lu(HHUHUHE ID$HEHID$HE8HJHM@HE0[]A\A]A^fDH}H_HL9vI>IHHH}HEHEHHAVAUIATUHHSHH_HHHE@HUHEH)HL4M$M9s"LfHHI9wIALu(IHHUHUHE ID$HEHID$HIHE8Lm0HM@[]A\A]A^H}H_HL9vI>IHHH}HEHEHHAUHATUSHLgHHHHFHGHFXH+F8Hv@H+uHHHHHH0Hu0H+u HGHGHG HG(HG0HG8HHG@HGHHHGPHGXLL[8HC H{0Hu@HU HM0LE8MKDHH9t7H9tJHtoHH9uIPHIH9HuDIIH9HuDHH+LkhHH+HC`LHHHHH0HH+uxHChHCpHCxHǃHǃHǃHHǃHǃHHǃHǃLHHH+LHuxL)H{xLHLHHHHHLH)HHHVfDHL9t/HtAHHL9HuIrHIL9LufI{IHLuHH+HHH+HHHHH0HH+HǃHǃHǃHǃHǃHǃHHǃHǃHHǃHǃLHHHHHLMJ fHH9t7H9tEHtoHH9uIPHIH9HuDIIH9HuHǃHǃHǃH(H (H[]A\A]HLHLHUSHHHHHHtHu>HHw1H}HE0oE HC0HE8C HC8E@C@H[]oFGHFHGAWAVAUATIUSHHHoHHHWHH)HHH)HvSHEHC0HtI$HHCHHPH@HSHHHC8HC0HS@H[]A\A]A^A_Hw(II)IMnIK6H9HHlHH9H<IHHs(L)HM4HCHHPH9t H)LH;IL;HkIKl.Ls(HkHHCHHC HEHC8HHC@L)HIHL4HH)L9v#H9tL@BfDH9tLH)Lp_Map_base::atAWAVAUATIUSHHH1IHuHEL,MtfI]IHKH!HHtPHHH1IHHHuI9u8I9uHsLtIEHtHH[]A\A]A^A_H=USHHHOHHtHHC(HH[]H9t1B 9E @SHH_HtRL Dr HFH9C(wHCE1HtHHK L9vHCAHuEHuI9v;1H[H_1H;_HtHHt$Ht$HH HHLI9wr HFH9C(rHH1[USHHHOHHtHHC(HH[]H9tHE H9B wӿr1HB(H9E(@ATUISH`HoEH@ HE HtsUHC@S8HU(HSHHU0HSPHS8HPHE8HE HE8HCXHEHE(HE0Hs LHtDHLHH[]A\HC8C8HC@HCXHCHHCPHs@H{0HD$HHD$H1[]A\AUHGATUSHIHH9L*L9n HvGH9]HHt'HL;h HxHHEHDHH[]A\A]fDrHBH9F(wr H1H9] tbHL;h r w{Hp(I9t$spH{HڹHEHEH[H]A\A]@H(tBH_ HC H9w r3HC(H9Bv)H1HH[]A\A]DrIt$H9p(.HLH[]A\A]USHH_HtQD@HCAHtHËK A9|HCE1HuEIu1HA9HOIOH[]H_1H9_HtHHIDEH HAUHGATUSHIHH9tD*D;n H};HGH9Ht#HD;h H~hHxHEHEH[]A\A]Ð~^HO 1H9HtHD;h H})H{HEHDH(t H_ 9C |&HLH[]A\A]HH1[]A\A]HH1[]A\A]AWAVHAUATIUSHH!H!MuhHH^ I$H|$H DL$D9AOE)A9щDLD)DL$AAHɀ|$*t?E)IEE9END)AH9HcM+T$\IAHHc\f_YHX$$MHH9 fL|$(0Hl$0$$Hp Mg0X I`(LH+LHLIW@H\$H;i(/Iv@I~0LfDHD$p/fDt$ f)BTVD)*f.MH(LH H$IHH|$Ht$PHAWAVIAUATIUSHHHOHHI)H)HHH4IH9LH$H]HMMH$III)Mt AI9t LHLHL$L$HL$L$IODM)L9tLLLIMHtHLmLuL}H[]A\A]A^A_DL<FfDHH9-HuME1E1>HGH;GtHtHHGHHAWAVAUATIUSHhLbh H|$ BxHL$(dH%(HD$X1f.H,AEAE,E,Ht$D$D$1EDHEDHIŰHHt$HHxH=D$H8H=HpHxHFC@Ds\Hk(HsPHC IcD{XHC0IcLHC8D$Lc`HChHCpHCxǃHǃCHHLLHǃǃHǃHHHǃHǃHǃImHǃHǃHǃHǃI9IE1@LM|$(I9IuMfI*l$HE(1L|$0HfHH*d$M L HHRHt9J }HRHuI9t;H }HU LHHT$0LLD$H^D$@(I9HtEHE(HHiHfHH HH*XD$YL@LHt$PHD$PLLLHt$HHD$HLHCPHS`H@)H|$@Ht$8E1H|$Ht$fDfH*fHY*XfH*^HHt$LL\BX T$D$@HLD$Ht$BX D$8HCPIHS`H@)9|KHJHfHH H*X5@HfHH H*X9fHH5HHCHD$(HHP Ht$ H|$XdH3<%(HH^HuRHh[]A\A]A^A_\HH,H1hLfHAL H*XD$ HHHtHHtHHHLH{hHtHHUSHH_HtQLFHCAHtHHK(L9wHCE1HuEIu1HI9HGIGH[]fH_1H9_HtHHILEHH(HUSHHHHu H1[]ÐHHHH[]AWAVAUATUSHHHHuH?IHI)H)HHH IH9LHT$H}HuLxHT$IIMt oAEH9t8LHHtoHHH9uHGHH)HHM| H9t5HLfDHtoHHH9uHH)HM|HtLeL}LuH[]A\A]A^A_f.HIHH9HuAE1E1 HGH;GtHtoHHGÐHHUHAWAVAUATISHHBXH+B8HxHPdH %(HM1HuLpHDMHHHGHGHHID$@I+D$HHHIT$0I+T$ HDIL$ HHXHEHEHhHJIHEIH`fHH?BI$HHH)HHDMDHHhH}DMHEHDMHxLpI}@HPH0jXZfH~fH~L!L9tzHL L9J8HwnHEHEH9`HEIL$xHXH+]LhHI+$HHHHHHHHsff.vHuHPEH]jDHLH)QfHHMdH3 %(HPuHe[A\A]A^A_]HHPH8HtHread_length_ != -1ulIdealInfoProviderEstimated coverage Correction coefficient AWAVEAUATIUSHHHdH%(H$1H~ HL$LD$ HLHPf(HC f(H_T$XfH*HCH@HfH*\\$X^\$H8IHtH1?H8IHtH1u}HL$LD$ LEHHHEHUH9t&HHDD$HY@@H9uH$dH3 %(HH[]A\A]A^A_Ll$PLI}H5I}D$ILt$0IuLLt$HD$(LL$0H|$(LH<1H|$0LHH9tLDLl$PLI}H5I}D$HD$0IuM6HHD$LL$0LH;1LHD$H|$0HH9tL+fHfHH H*XfHfHH H*XfH{ EH H5H=7HLHHHD$H|$0HH9tHT$H|$0HHH9uWeightCounterSupposedly covered edge ideal weight at dist Actual weight After normalization threshold Querying paired library for edges UHAWAVAUATSHhHHGdH%(H]1HGIAIHxHHLHH9H@ILHH HHHDH8IHtH1 HHH LpxHMl$HLLIELP LHHLHDuD0HHHLLLEHPH0jAXZH8IHtH1 A|$ t^H8IHtH1rAD$8HLuf.w)HHxLHHH9SH8IH3H1LLI~H5H3I~H5HIHID$LHHq HHHHHHHH(H LH5HILH H;tHHMmHpL LH1LH H;tHLLI~H5"LHHLMt$H HHHHHHLHHHHHHHxH5HIIt$HHHH(H LH5 HHpHHLLqxLHHcuHpH0H H;tHHHH9tHHMmHpL LH1LH H;tHBfDLLI~H5I~HIvMmL LH1LH H;tHHLLI~H5I~LH5 HIAD$8LLHMmIvL LH1LH H;tH@H]dH3%(HxuHe[A\A]A^A_]HH HHH9tHHxH8HtHHHHH HH9uHHH HH9tHHHH9ttHHkCounting weight for edge Excluded edges Total ideal coverage Lib weight UHAWAVAUATISIMEHXHHdH%(HE1H8HHtH1SIu(HHEHLHHIPHHLHAWILLHHHLXZL9fMD$ML$HDMt9HLLHH@HtH;P vH@HuL9tH9Q vXNHI9uHtHLL9I|$MD$Ht1HLH HH@HtH9P sH@HuL9tH;Q sXVHI9uH8IHtH1vH8HHtH1H8HHtH1MHHHDžfu^HHtHEdH3%(He[A\A]A^A_]L@LLI~H5I~L#H IvHL LH1LH HH9tHH@HHH{H5HHHHGHrHHH HLMLHHH(H HxH HCH9tHHHH9tHHM'HpL LH 1LH HH9tH`H@HHH{H5HH IuHHHHH(H HxH HCH9tHHHHHHL HLH1H HH9tHL@LLIH5 IL#H IwHL LH1LH HH9tHfHHHHtHIHLH HIH9tHHHHH9tH HIH9tL^H HIH9tLHCUHAWAVAUATISIHHv(H`HHGHGHpH}HHXLPDxdH%(H]1PHEH]H9Hh2IG LmHHHH?HpHHH)HH HDxDLHHD|HEHD|HXLPLHPH0jAA|$ XZt^CHH`LEHEHH9ht_Mt$HILx HpHpxHH+HHHHHHHfH%HEHhHhHtHH]dH3%(H`uHe[A\A]A^A_]H}HHtH`H8HtHHSHLIHHH0HdH<%(H|$(1H|$H|$LT$L9LKfLCHDMt9HLLHH@HtH9P sH@HuI9tH;Q sXFHI9uHtD$D$HD$(dH3%(u H0[fUSHH_HtQL@HCAHtHHK I9rHCE1HuEIu1HI9HGIGH[]fH_1H9_HtHHILEHH HUSHHHHu H1[]ÐHHHH[]UHAWAVAUATLuSIHMEHXHuHv(dH%(HE1HGGHGHG(HUHGHG LHPHHUHuH}AWMLMH}XZHtHELuI9HEIIIHEHEI9tbHE@fH~fH~L!L9Hx~L L9J(tuHvff.vHuHHEHEI9uHEHEHEHtHHMdH3 %(HuAHe[A\A]A^A_]fDHLH)DLdff.)rH}IHtHsHLH}IHuIAWAVAUATIUSH(GHGdH%(HD$1HGHG(HGHG HH$Lt$I9HII fHI9tWCfH~fH~H!H9HxoL L9J tfHvff.vHLHI9uH$HtHHL$dH3 %(Lu=H([]A\A]A^A_DHLH)DLsff.AH<$HHtIuLHHUSHHHHu H1[]ÐHHHH[]/srv/scratch/marinovg/spades-cloudspades-paper/assembler/src/common/assembly_graph/core/graph_core.hppCheckUniqueIncomingEdge(v)AWAVAUATUSHH8HV@H+VHdH%(HD$(1HFXH+F8HHHHHHV0H+V HHƒDjDE9|.H\$(dH3%(DH8[]A\A]A^A_IMcH LLHH$HH!EL1xI!IFH!HHƒu{H{HPHH+HgHH)HuafH8AH!HO8H!Hy8H!H7HH!LvLL<$IAy@HHH H5H=AWAVAUATIUSIHXHN@Hv dH%(HD$H1H9t]IUXI+U8Ho@I+MHMu HHHBIU0HHHH)HLHD$ HD$LLHy*HD$HdH3%(xHX[]A\A]A^A_H|$HcLHʉD$HL$HT$ HL$LH|$HHH!L8HT$ I!HIWH!H!H@8HH!IHH!AHHHpD$HuH5B@LLJM9tIH!Hz8H!H8H!LI!IzMRI9H!H!H9t.fDH H5H=@IS@I9jH H!Hq8H!Hv8H!H6H!L;VHNH!HH9uHIII=AWAVAUATUSHHHHuH?IHI)H)HHH IH9LHT$H}HuLxHT$IIMt oAEH9t8LHHtoHHH9uHGHH)HHM| H9t5HLfDHtoHHH9uHH)HM|HtLeL}LuH[]A\A]A^A_f.HIHH9HuAE1E1 AWAVHAUATIUSIHHMD$H?LI)H)HHH H IH9LHT$I<$MD$HXHT$IIMtoHBAEIEH9tIHGHHLH)HHIDHHtoHJHKHKHH9uH0L9tH@u]I4B HI4>HH8HHL9tUEtLDH))HIT>H҃@tLDH))HI4>HHуDH/fH*MfI*^HD$H \ $tHH$HtHt$H|$l$ 4$l$`$u4$f.t$ HD$0H9Xu|$DHH9\$8|$DL$H8HHtHH8HHtHH\$(Ƅ$C {8o$HC()$H$HC0oCH$)$Lt$DH\$H$fo$$C H$C8HC(H$fo$HC0CH$HdH3%(HD$HHX[]A\A]A^A_LfHAL H*XfHfHH H*XfH8HHtH1H8HHtH1<$؉D$D|$ @fRH|$HH$H$HC@H$HH{XHCH$CP($C8H$HCPHSHHK@H$$HCXH$HH$tƄ$f%*YXXf(f(fTf.Jf.H,HD$8H|$8HHEHD$8$L|$PLLt$XH5 LHLLeH$IwHL$LH1LH$HH9tH|$PL|$PLLt$XH5L$LLeH$IwHL$LH1LH$HH9tH|$PmH8HL$HHL$eLI|$H5H$It$HHL$LH"HH$HH9tL\H,HHH1H|$8H,ffUH*f(f(%fT\f(fVf.s~L$LI|$H5I|$HLmH$It$HL$LHLH$HH9tLL$LI|$H5 Ht$8I|$LmH$It$HL$LHLH$HH9tLLI|$H5&I|$D$ H$It$HHL$LH(HH$HH9tLH8HHLI|$H5HD$(I|$p H5 HHD|$DHDH5 HHDHH5HH$It$HHL$LH*HH$HH9tLHD$H@8H H5H=HLHH$HHH9tH|$xHHtH$HtH$HtH$HuH H5H=HcKYAHH|$PHH$HHH9tSWOverlapAnalyzerAnalysis starteds1 s2 Empty overlapResult /srv/scratch/marinovg/spades-cloudspades-paper/assembler/src/common/modules/path_extend/overlap_analysis.hppmatch_cnt <= std::min(r1.size(), r2.size())shift > 0 || size_t(-shift) <= start_posAWAVIAUATIUSIHHHdH%(H$81H8HtHHIUIHH)H9кHGI9FIFFHD$H8HD$HtHH8HD$HHHL$PH $HL$H<$L1Lt$0IMHLLH|$8tHD$XHmHHCHCHCHC H|$HHtH|$hHtHH4AIcHSHHH8HHtHH$8dH3 %(HHH[]A\A]A^A_@L$LI|$H5HD$PHL$1LHH$H4$I|$H|$hHtHD$It$HHD$H$HHD$L$H|$LHeHD$H$HH9tL@L$LI|$H5HD$PIMHLHH$H4$I|$H|$hHtHD$It$HH$H$HHD$L$H<$LHdHD$H$HH9tL fDH{H{H{H{ H8HHHL$LI|$H5L$It$HmLL|$L$LHhHfDHD$PH$]f.Iw8L$D$,H$IOHDŽ$Ht$H4$IT$0HƄ$HDŽ$H$HDŽ$HDŽ$HL$HD$Ll$pLL$LLD$Ht$pHL$,H|$MLH|$pIAL9tHD$H$HH9tEH$tf$HHCHCHCHC HtH$I0L9tjL$LI|$H5H$It$HmHHD$L$LH`HHD$H$HH9tL@L$LI|$H5I|$HL$It$HmLL|$L$LHmHH$LHH9tL@HcH9QHH9@H H5H=fH$II)LHHiH?H9LIH$H$II)H9tHLLK.I9 K4.LE1@уuIHH9u勄$Hc$HH9$VHc$HcH9r~HCHCH3HSHKHLk H$HII9LGM9wlH<$Lk HII9LGM9)MtLH$ fH H5H=#@E1E1HHD$H$HH9tLHH|$pIHL9tHD$H$HH9tH$HtH$I0L9tH|$HHtH|$hHt|HHbMHtLH H5H=HoH|$hHHHsHT$H$HHH9j`Considered max overlap Analyzing edges and Low alignment sizeMax flank length - Low identity scoreToo long flanks for such alignmentLess than k+1 nucleotides were left of one of the edgesAWAVIAUATIUSHdH%(H$1Hz(H<$u Hz0H$ HH{H5H{H5 H{H5H{H5cH{H5 H{H5iH{H5 H{HH5 HHH5HH5HL$HsLH$H$H=HH$ID$H9tHsLH$H$H=HH$IL9tH=H=I}(' I}0 HAE L$HD$`LD$pHL$hHt$_H$IHD$pD$hD$`D$_LD$HL$0HD$(Ƅ$Ƅ$DŽ$H8IHtHIEImHD$IEHD$8IEHD$IFHD$ H8HD$@HtHHL$HH|$LH!H#T$HHH8HHtHH$H$H9'H)HT$xHD$pH9QHH)H9HCI9^ZHI#EHh H$H)H9HBH8IHtH-HfH*AYF%XXf(f(fTf.v7H,f%fUH*f(f(fT\f(fV,H$H$A^ H9 H)HT$pHD$xH9H)H9HB95H$HHHt$0H|$(HD$`HD$h&IFHL$xH@H9v)IUHH$H!HR H)H9H8HHtHfH<$IH$dH3 %(H$Hĸ[]A\A]A^A_ÐH$ HH{H5L$HT$Ht$ HLH$H$H{H5HHD$HH$HT$HL$8Ht$ HH$H$H|$HH$HH9tH$ID$H9tHD$@HsLH(L$LHsHH$IL9tH-fHfHH H*XfH$ HHt$H{L$HsHmLL$LHPHH$IL9tHf.H$ HH{H5H{HI,$L$HsLL$LH[HH$IL9tHHHfH*X%XXf(f(fTf.Pf.H,HH$H$H9H H5H=HT$xHD$pH9fDH8HHLH3H$ HH{H5L$HsHmLL$LHSHfH$H$H9DHD$xHT$pH9H)H9HB9H8HHZHAH$ HH{H5L$HsHmLL$LH]HH$IL9tHf\HH,H1DH,f%fUH*f(f(fT\f(fVf.sxfDH$ HH{H5H{HI$L$HsLHD$L$H|$LHYH$IL9tHH8I#uH|$HHn H)IMIUI}IuL$I:IrIJIRAB Ij(IZ0AB8E@H$ HH{H5L$HsHmLL$LHgHfDbfH*t$H|$H fH*|$HHt$0H|$(^HD$h|$`|$=D$f.fDH8HH,HH$ HH{H5L$HsHmLL$LHbHfHfHH H*XhfHfHH H*XfHfHH H*XD$H H5H=HHH$IL9tHIHHHHH$HIH9tLHH$IHL9tHUAWAVIAUATUSHHHGHHw(H_II)IIK 'H< H9vEH)HHJ HEH]HHIH)H9H9HL9LHCLlHI9J<T$ H $LH $T$ IHu(H)HHJHEHEHLHPH9t H)HH}ILuLmHH](HEHHE JD#HEHHHE8HHE@H[]A\A]A^A_DH9tLH)HAWAVIAUATUSHHHGHHw(H_II)IIK 'H< H9vEH)HHJ HEH]HHIH)H9H9HL9LHCLlHI9J<T$ H $LH $T$ IHu(H)HHJHEHEHLHPH9t H)HH}ILuLmHH](HEHHE JD#HEHHHE8HHE@H[]A\A]A^A_DH9tLH)HAWAVIAUATUSHHHGHHw(H_II)IIK 'H< H9vEH)HHJ HEH]HHIH)H9H9HL9LHCLlHI9J<T$ H $LH $T$ IHu(H)HHJHEHEHLHPH9t H)HH}ILuLmHH](HEHHE JD#HEHHHE8HHE@H[]A\A]A^A_DH9tLH)HHGH;GtHHtHHHHWÐATUHSLg(HL;'tUID$HC(HPH@HS(HHCHS HHHSt HUH[]A\Lc(gap_len_[0] == Gap()AWAVIAUATUSHHE(ExdH%(HD$81A@$A@ D$HH!HG H;G(Hn8Lf@%HHtHhL`IV II+H\$IHHHHII+HHIH)HHIH\$1HHHD$HD$DEu D@EcHt$1HHD$0HPx zHt$1HL$HD$4$D(DxH IpI9kHHtAAAAIIVHINxH!I~hH@ H+BI9Ht IcHHHHD$$Dl$MM;D|$D$D$D$t(fDI}ILHLIHM9uHD$8dH3%(gHH[]A\A]A^A_xx fDH_8H;_HCIF8HPH@IV8HIF(IV0HHIV HLfDII;HT$HT$HBIHPH@IHIIHHIPHǀǀƀ/HI^8IIGH H5H=#!data_.empty() || gap == Gap()AWAVAUATIUSHHIH(dH%(HD$1HG@H9G `HKPHQH9HtH(L`HHC@HHHQH9Ht AoEHHHSHHH!HHLp HCxL+rIcUL@HHH9H9uHHQH97HtL0HHAoELL;)$t-II}MHHLIHPL9uHD$dH3%(SH([]A\A]A^A_f.HHHMDD Eu DAEtWHC@H;C |AuuAMuAUu A} YH H5H=fyuy u뚐LsXHKLH+CHH)HwH{1ҾLsXIFHC@HtH(L`HCXHPH@HSXHHCHHC@HSPf.LHLH+HH)HwH1ҾLIFHHt AoEHHPH@HHHHHhLHKpLH+ChHH)HwH{h1ҾLIGHHtL0HHPH@HHHHHRFound PI with back weight , weight threshold AWAVIAUATIUSHH1H8dH%(H$(1HGLl$PHT$HH\$PH!H@Ly HD$`H@(HD$HGI}D+xHD$XHD$hHD$pHD$xHDŽ$HDŽ$HDŽ$HDŽ$HDŽ$HDŽ$I}h1HDŽ$HDŽ$HDŽ$HDŽ$HDŽ$HDŽ$HDŽ$HDŽ$HDŽ$HDŽ$HDŽ$I1HDŽ$HDŽ$HDŽ$HDŽ$ HDŽ$(HDŽ$0HDŽ$8HDŽ$@HDŽ$HHDŽ$PHDŽ$XHDŽ$`HDŽ$hHH\$ LHLH$pDŽ$x?HD$ HD$$D$,HJfLIT$Ht$HL!H+rHHQ H9I|$EILHL$LHLPHCD$(HD$0HD$HHD$8HD$@AHt$0HD$AD$ fH~fH~H!H9HL$HH!H9HHHH HHHHIHHH HHHHH)HH)H9HHGHvL$f.HT$HLLD|$ HD$$D$,H$H9D$p1fDHHuHL$HH!H94HH!L$f.tfH8HHtHuC1 LH$(dH3%(LH8[]A\A]A^A_H$HH}H5H}D$H5HIAD$ LL#H$HuHL$LHLH$HH9tH1 H$HIH9tLHLHHHt$0HHHHI}hHI}HHwc_ != nullptrSingle loopMultiple cyclesAWAVAUATIUSHHHLNXHV@LFHdH%(H$1LH+N8HL)HHHHHH HF0H+F HHHH{HL9Ll$ HLrLzE1HIUMH@D$(HT$8HT$@LHD$0HD$HHt$0L$C H|$ $LD$D$L$ u $D$f.1H$dH3%(XH[]A\A]A^A_IQH$H4$H4$LNXHV@LFHLH+N8HL)HHHHH HF0H+F HHHH H5H=zfDHLMLHthH8HHtHDH4$H{H4$HNHV@LFHLNX DH8HHtHufHl$pHH}H5L#H\$PHuHLL$PLHLH|$PHH9tHrDHl$pHH}H5L#H\$PHuHLL$PLHLH|$PHH9tHH H5H={IHLH|$PHIH9tHt$0HLHAWAVIAUATHUSHIIHL$LL$HHL$Ld$tHH[]A\A]A^A_I0MMLLHHHCfrom <= to && to <= Size()AWAVIAUATUSHhLn@L+nHdH%(HD$X1HFXH+F8IHHHLLn0L+n IIL9HHFH=HkLshIH;1HCHHCHCHC HC(HC0HC8HC@HCHHCPHCXHC`HCh1HCpHCxLHǃHǃHǃHǃHǃHǃHǃHHǃHǃHǃHǃ1HǃHǃHǃHǃHǃHǃHǃHǃHǃHM9H ǃ(?ID$ MLIHD$HD$0HD$HD$ HD$m@HHI$HHH)HHo)D$ Ht$H|$HHD$0HL$HH0HPHII9tOI9I$HI+$HHHkHHHj@J1wH|$XdH3<%(HuXHh[]A\A]A^A_fDH H5H=@D$ HD$$D$,LHHHHHHHLooking for IS cycle last is pos looking for 1sr IS cycle AWAVAUATUSHHHdH%(H$1H8HtH1IHCXH+C8HHHHHC@H+CHHHHS0H+S HDdExHD$ LsxH\$E1McH$HAIALLHL)HT$ HH9rDd$ H\$H8HHHcT$ H<$HHT$xL\$XHt$`LT$hHL$PLL$@HHCXL{8L)LC@LsHHH{0Lk HHHl$HLd$L)HIHL)HLHl$HL)HHHHl$LLd$L)HIHL)HLH9l$1XH$HHHCXL{8HLC@LsHH{0Lk HT$xL\$XHt$`LT$hHL$PLL$@L)L)M)HHL)HHIHL)HHL)LHHHHHH)H9]H8HHtH1H<$H$dH3 %(wH[]A\A]A^A_fDL$pLI}H5HI}L$PIuM$$LL$PLH1LH$PIL9tLfD;l$ H\$Dd$ H8HHdH1NL$pLI}H5 t$ I}L$PIuHmLL$PLH1HH$PIL9tLD$ HD$ H$L$pLI}H5I}L$PIuHmLL$PLH1HH$PIL9tLDd$ H1HLH<$HHLHH$PIHL9tH$PIHL9tHFound IS cycle last edge pos last_edge_pos > posresult pos last_edge_pos > -1(int) path.Size() == last_edge_posAWAVAUATIUSHHdH%(H$1D$ H8HtHH|$ {HCXH+C8HHHHHC@H+CHHHHS0H+S HlkHcL{xE1Lt$H$fDI@H$LLL)HT$I$H9rH8IHtH9l$  HCXH+C8DmLc@L+cHHHIHJ Lc0L+c IIDAA9|KfDHAE9uHCXH+C8HHHHHC@H+CHHHHS0H+S H9 H8HHtHuVH$dH3 %(D$ H[]A\A]A^A_ÐH H5H=@Ll$PLI}H5 t$ I}Lt$0IuHLLL$0LHHH|$0IL9tLHSXH+S8HC@H+CHHHHHHHHC0H+C HH9H H5H=fDH H5H=@Ll$PLI}H5t$ I}Lt$0IuHmLLL$0LHHH|$0IL9tLvf.Ll$PLI}H5I}Lt$0IuM$$LLL$0LHLH|$0IL9tLHLHH|$0IHL9tAWAVAUATIUSHHkH=LkhHhdH%(HD$X1HFH;1HHCHCHC HC(HCHC0HC8HC@HCHHCPHCXHC`HCh1HCpHCxLHǃHǃHǃHǃHǃHǃHǃHHǃHǃHǃHǃ1HǃHǃHǃHǃHǃHǃHǃHǃHǃHH ID$@I9D$ ǃ(?I;D$HD$0HD$4D$<HH#PLt$0HLHHR@Hp8ID$XI+D$8HHHHID$@I+D$HHHIT$0I+T$ HDlEID$ 1IHD$DMcHHD$HD$ HD$HHI$HHH)HHHЋ0PLH@ t$ Ht$T$(LL$$H)D$,HD$0HL$H8L!HW@Hw8HHH9l$tKI$IEH)HI+$HHHQHHHPfHH_@H|$XdH3<%(Hu)Hh[]A\A]A^A_fDID$XH@HPHHHLHHHHpos >= 0ScaffoldingPathExtenderRC connectionCycle scaffoldingAWAVAUATUSHHH8dH%(H$(1HF@H9FHHHH@H;BHL$ HD$( HK@H;KHQHH#AHH@H@8H9JH$PH$PH$XHD$,Hl$ L2LjHHHL$LLHDŽ$PHDŽ$TƄ$\HD$xH+D$XHT$`H+T$hHHHHHHT$PH+T$@HHHwLH|$ HH9tH8HH|$ HIH9tHLIHATUHSHHILU0IHMHEHtYE1LMHHHHHHt= this->size() (which is %zu)Excluding edge because of no ideal info #Excluding edge because of ambiguous paired info #SimpleExtensionChooserAWAVAUATIUSHH$HL$ HV@HN dH%(H$x1H|$H9t`HFXH+F8H_@H+VHL~ L$IHHHHHHV0H)HLHT$ LHH$IHPHHHH)HIHIEXI+E8Iu@I+uHHHHHHIu0I+u HD|0E_HD$ HD$(HHD$8IcHD$HH$HD$XH$HD$`HD$ Hl$HH+l$(H@Ht4Ht$8 HH@HtH9h sH@HuH;t$8t H9n H$Iu H1IHHD$0H$HH@HD$H$HL$HPHHHD$PH9unYH8HD$@HtHmHt$0H|$ H$H$HHPHHH)HIH9IuxHI+HHHHH?|IIIL)H4H4H)LHIH9H|$H[HHHWHHzjHT$Ht$(L@H@fH~fH~YL!L9^HHH H9HHf.AHD$(EHLd$xHD$pH9D$xHDŽ$HD$L$L$HDŽ$H$HD$(HD$0H$HD$HD$E1LHpHD$(H@LHH|$0HL@AH$H;l$H$H] MHu(fIH@HtH;X vH@HuM9tI;_ s\0MH|$HP HX @(LIHHu I9LLH$AG(HH;D$HKH|$0H$HH$HD$(HL$(H8H@HH)HHH9HL$H$HQH9 L$HL$IL$I,@HHHD$HH9H$H8H@H)oC H)$Hŋ$H9uH8IHtHCHt$0H|$ wHHH)'Ht$PfDHHf.f.HHH5LHD$8HD$8IHfD1HB I9G @DH|$XH|$`H5)H|$`DHD$@HL$XHHqHD$hH$HHD$@L$H|$hLH8HD$@H$HH9tH|$XH$H|$H$xdH3%(nHĈ[]A\A]A^A_HcLLHʉD$HL$H$HL$LLHHL!H(H$L!HHUL!L!H@8HL!HHHL!HHLHD$yHHoLH51LH$LIt$LMmL$LHJLH$IFH9tLHt$0H|$ 1HLFL9L!L;OHw1L!HI9uHLH;H=H1H$IHL9tLH|$H$HHH$H|$0HHLd$@H$HIL9tH|$XHH:t 1fD0LOHVI9uAWAVAUATUSLW L^ M9MLoLfIo^IE1C|-O|)Nt"|$CHuWJ4'L$HI4D)>H@8u^HAI9tS@tLL$H)HID>H҃tLL$H)HI4D>HփfD1[]A\A]A^A_fH^H9_^8_USHdH%(H$1~8D$`F 8oF$$HF0)$H$HF(oH$)$G oGD$(HG0)D$@HD$0HG(oHD$8H$)D$PH9D$X<$tH|$ Ht|$`tH$HtH$dH3%(H[]GPHWHHO@HT$D$HGXHL$HHD$ t$/FPHVHHN@HT$pD$xHFXHL$hHH$tD$`HH$Hl$`H{P H$H9D$HHu@H{@H$H9D$8H$H9D$0$9D$(HH<$HtH|$ Ht|$`tH$HtHgap.right_trim() == 0 && gap.left_trim() == 0Edges are supposed to be too far to check overlapsEstimated gap looks unreliableNot supported yetCompositeGapAnalyzerTrying to fix estimated gap between Overlap was not foundAWAVIAUATIUSH8dH%(H$(1Hz0Ht$u Hz(H$HH{H5H{H5-H{H5H{H5jH{H5 H{H5iH{H5 H{H5 HHH5HH5HLd$@HsLHT$HHt$@H=HH|$@ID$H9tHsLHT$HHt$@H=HH|$@IL9tH=H=I}0I}(wHH8HHtHCHL$AE ;A(IHL$HYHIH9HL$Ld$@L$@EHLLLLL$tH$HtD$D$T$x[tH$HtHtHHH9\$t-HkH3HrH=_E[fDAE HL$9A0H8HH$Ht!HH$IE(A}8AoEAu Ƅ$H$IE0)$$AoEH$)$[HHD$H@89N$$fo$AG8AG H$AIG(H$fo$IG0AGH$H$IG@H$HIXIGH$AGPE$AG8t~H$Htqj@H8HHtHGAE AoEAAoEAG IE(AGIG(IE0AG8A}8IG0H$(dH3 %(LfH8[]A\A]A^A_fDD$`AG8foD$@AG HD$hAIG(HD$pfoD$PIG0AGTHtHDH$HH{H5Au H{H5 HIHD$Lt$ IMIULHpHT$(Ht$ LH5HHD$HD$Ld$@IMIULHpHT$HHt$@H|$H|$@ID$H9tH|$ IL9tHsLHmLL$@LHHH|$@IL9tHxH8HHtHLf.H$HH{H5Ld$@HsHmLLL$@LHHH|$@IL9tH:AEPIUHIM@IWHAGPIEXIO@HIGXtAG8B@H$H$IG@H$HIXIGH$AGP|$xAG8_H$HNDAEPIUHIM@H$$IEXH$HH$tAu Ƅ$[fDAG8fDH$HH{H5Ld$@HsHmLLL$@LHHH|$@IL9tHHH{H5Ld$@HsHmLLL$@LHHH|$@IL9tHH H5H=HHHH|$@IHL9tр$HtH$Ht|$xtH$HtHtHHHx뉀$HtH$HtcKYH|$@IHL9tH|$ IL9BHLooks like wrong scaffolding. PathId: , estimated gap length: Gap after fixing (was Overlap is not large enoughGap joiners offcandidate.d_ > int(g_.k())AWAVIAUATUSHHHdH%(H$1DD$D$HD$D$HIAVHHHC+PID$@I9D$HLPL@L$I9IAT$@HD$HHT$ LT$ LD$(H|$0HD$8LHD$PD$XH$HH$$$fo$Ƅ$x$`H$)$@H$hH$fo$H$p)$PnL$@LL$xtH$HtD$D$$tH$8HtD$D$ LC$H$H$A@։))1Ҁ$D$|$t$T$tH$Ht|$XtH|$xHtGD$9uD$9kH8IHtHz|$foD$EEH$dH3 %(HCH[]A\A]A^A_DH$ H$H$(H$$0$H$8HH$tƄ$x=ID$XH@H\@H8IHHL$@LI}H5L$IuM$$LL<$L$LHLH$LHH9tLHSAF;BD$HD$D$EfoD$$DEifHHt$HP8CH8HHtH!EH=H=Hxq=5LI}H5t$I}H5HIAvLH5HL<$IuM$$LL$LHLH$IGH9tLD$9D$8tH8HHzHaLI}H5&I$ I}H5HIID$ I9D$@LHLH5HIAvLL4$IuHLL$LHHH$LHH9tLif.HSAF;BH H5H=H={H=HNLI}H5L4$IuHLL$LHH1|HLHHÀ|$XtH|$xHtHH$H$HH9t부$xHtH$Ht$tH$8Ht$tH$Hsi|IDm:H$H$HHH9dAWAVIAUAT0USHHIHHs Hx IHsIEIEImHAEHkHtgM0HHE HC HE(HHC(tH=tM@EHCHCI\$LcHuHu1HmIHuHL[]A\A]A^A_@f.LHLHC@LLLIE= 1Path is too longpush donepush other candidate Inserting vertex Found candidatesAWAVAUATUSH8dH%(H$(1HBH9LD$HFXH+F8IIILHHHHHF@H+FHHHHV0H+V HHHYI$ID$H)HHHHHH$HL$(HD$ H$HD$8fD0LHHHD$PHT$hHt$`HD|$PHD$THHD$D$\IN@IF0H\$HHQH9HtHHIF0H8IHtHHH#\$HHCHHt$H|$HT$PHD$XI$ID$H)HHD$(H9HDmHo)D$`HPHT$pHDxHL$HHHL$H8HHHH|$ H|$8H5Ht$H|$8HL$ H$HHHD$0HqL$LHHHD$0H$HH9tH|$ DH|$`IuxHD$`H;H8HHtHfD1ffIUXI+U8IE@I+EHHHHHHHIE0I+E HHH H5H=H|$ H|$8H5HH#\$H|$8HsHL$ H$M?HHD$0HqL$LHLHD$0H$HH9tH|$ ?H8HHtHI$Hl$`LHPH0HD$dD$lT$`HPH8IHtHH8IHtHI$HH|$HH#HH@HT$`HD$hID$I+$HHHHAH8IH-HH$HH{H5It$I+4$HH{HHH5HL$HsMeLLt$0L$LH$LH$LHH9tHOfH8HHtHID$Hl$`LHHXHP@HD$dD$lHމD$`HH|$HH!HHCHT$`HD$hH8HHHH$HH{H5L$HsHmLLt$0L$LHHH$LHH9tHH$(dH3 %(2H8[]A\A]A^A_Ht$HLzfDH$HH{H5I$HH{H#HpL$HsMmLLt$0L$LH LH$LHH9tHhDH$HH{H5L$HsMmLLt$0L$LHLH$LHH9tHH$HH{H5L$HsHmLLt$0L$LHHH$LHH9tHH$HH{H5L$HsHmLLt$0L$LHHH$LHH9tH1KfDH$HH{H5L$HsHmLLt$0L$LH HH$LHH9tHHH߾0HHHD$0H$HH9tHHHHT$0H$HHH9uHH|$ HHHD$0H$HH9tng`YAWAVAUATIUSHHXLiHdH%(HD$H1HD$HD$L9HD$ txLt$0L|$fHI9tZoLLH)D$0HCHD$@tHt$H;t$ HtoHCHFHHI9Ht$uHHLPHT$LLHH|$HtD$D$HL$HdH3 %(u HX[]A\A]A^A_ÐHL0H|$HHtHHATUHSHHILU0IHMHEHtYE1LMHHHHHHtHHtHAWAVHm۶m۶mAUATIUSIHHMD$H?LI)H)HHHH IH9LHT$I<$MD$HX8HT$IIMt$oHB0AoBIF0AFoB AF H9HG8HHLH)HHm۶m۶ HHHH!HH H)It f.HHt!ooBCoB C HB0HC0HK8H8H9uHpL9ttHE8LIm۶m۶ HH)HIIL!HHH)HfHt!oHF0oFHC0CoF C H8H8H9uHtM,$I\$M|$H[]A\A]A^A_fDL<I)I^H$I$IH9DHuͻ8E1E1TDijkstra%lu startedAdding new entry to queueEntry: vertex distance finishedAll neighbours of vertex processedChecking new neighbour of vertex /srv/scratch/marinovg/spades-cloudspades-paper/assembler/src/common/assembly_graph/dijkstra/dijkstra_algorithm.hppCheckPutVertex returned true and new entry is addedAWAVAUATIUSHHH$Ht$`HT$HHL$@LD$PdH%(H$1H$HHD$$D$7H$HHD$h$H$D$6H$ HD$H$0HD$8fDH;l$]H8HHtH1LeIM!|$6Mf8IF@IHD$M!IExHI^IMpHt6HHH@HtH9X(sH@HuH9t H9Z(IHD$(H8IHtH1hIEHt$@H+pIF HHD$ H8IHtH1!LL$ LD$I}(Ht$(LHH8HHH1H|$Lt$8H5!LL$LD$HH5H 1LH$H$LH5HH$IGH9tHD$LHHpL$LH|1HH$IGH9tH|$H;l$fDt$7@8t$6H8HHtH1H$dH3%(.Hĸ[]A\A]A^A_fHEHD$fH|$Lt$8H5!LL$LD$HH5H 1LH$H$LH5HH$IGH9tHD$LHHpL$LHp1HH$IGH9tH|$dH8IHtH1HD$ H$L$H$HD$(H$HD$`H$HD$HH$HD$H$HD$PHpH;pHt2fo$fo$Ffo$F H$HF0HL$PHF8HAHL$PHPo@H9H$HL$)$H1o@)$o@H)HHm۶m۶mHH)$$$H$$$$$H@H|$H|$8H5L$H5H Iغ 1LH$H$H|$8H5 HHD$XHt$ H|$XH$IGH9tHD$LM6HpL$LHu1LH$IGH9tH|$DH|$H|$8H5HD$IL$LHpHL$ L$H|$ LHs1H$IGH9tH|$ H|$H|$8H5HD$L$M6LHpL$LHw1LH$IGH9tH|$H$ HH}H5L$LD$HH5H 1LH$H$H}H5HH$IGH9tHuLHL$LH~1HH$IGH9tHZH\$PHT$hHHC?HH|$HH$HIGH9tH$IWHH9tHHH$HIGH9u|HStarting dijkstra run from vertex Priority queue initialized. Starting search already counted. Proceeding to next queue entry.Check for processing vertex failed. Proceeding to the next queue entry.Finished dijkstra run from vertex Dijkstra iteration startedVertex with distance fetched from queueDistance to vertex is found to be at distance from vertex UHAWAVAUATISHH(HdH%(HE1H8HtH1I HHsxHCXHDž HDž(HDž0HHChLHHHCpHHCxHǃHHHHHHHHHǃHǃHHHHHHH(H;0HǃHǃHHHHCPHDž@HDž`HDžpHHHHPHHXHh Ht.fo@foPFfo`F HpHF0H8H(oFHHH 1)oF)oF)HFH)HHHm۶m۶mHHHHH@HH@H@HHPH8IHtH1\ L@IGHH HfDH(H9 {PH8IHtH1H HHHLo(oGLg0)HHGLw HHHHfHHRHtH9J(sHRHuH9HtH;H(s+HHHHHH HLp8Lh@L`HHp0H(HHPH)H8 H(H8IHtH1 HCxHHtJHHDHH@HtH;P(vH@HuH;Ht H;Q(HHHfoH)IH8HtH1HCXHH;CHHCXoC`H8IHH1LHH5LIwM$$LL LH1LH8IH4H1LLH5LLLH H5 1LH(H LH5HH IFH9tLIwM$$LL LH1LH IFH9tLH(H9 9DCPH8HHtH1H HtHEdH3%(cHe[A\A]A^A_]o@H)H1)o@)o@)HHHo@oG@oG @HO0HHHm۶m۶mjHH(H@HPILHH5LIwM$$LL LH1LH IFH9tLLLH5LLLH H5 1LH(H LH5HIHLH5HH IFH9tLIwM$$LL LH1LH IFH9tLHE@HH;C ~HHHHL HHL@LI|$H5"L LH5H 1LH(H I|$H IGH9tIt$LMmL LH1LH IL9tLjLLH5LLLH5H 1LHHLH5HIHLH5 HILH5H H 1H(H LHH HH9tHIL9tLIwM$$LL LH1LH IFH9tLL@LI|$H5M/L It$LL LH1LH IL9tL"L@LI|$H5"L LH5H 1LH(H I|$H IGH9tIt$LHL LH1HH IL9tLzH@H H(BHLH HtHHHH HH9tLHHHIL9uHHH HH9tHLHH HLHH9tH?SwImH HLHH9HAUATH)USHHHHHyHBH<DHD#IvLM ILM~5LHL\ E:#~ t@IIN\E:#dLHuI9t D:eDcILM~9LHL\ E:#~$8IIN\E:#,LHuI9t D:eeDcILM~1LHL\ E:#~IIN\E:#LHuI9t D:e-kIM~4LHMA:+~ DIIOA:+LHuM9t A:(HH9HH)HHIHHHLH[]A\A]ILfL)IkLiZILf.L)IkLiILf.L)IkLiILf.L)MCLaHHH[]A\A]fDHHH[]A\A]fDH3HuH3HuH3HAWAVIAUATUSHHHdH%(H$1HD$HSHHT$ H|$HLl$ HD$0H|$0Ht$ILl$@LLt$@HD$pH|$pHt$0IL$qLL$HD$PILd$`yLD$PHt$pLLLd$`HDŽ$IL$H$LHHHHLjHIXZH$vH$HfDIvH|$0HtIvH|$HtL9LKIWuLcMILE IvLK MM~4LHI<D:~ DHHI<0D:HHuL9tE:|IL9uHH$dH3%(LHĸ[]A\A]A^A_@LHL$pLHHD$PHHL$HL$HL$HDŽ$LLd$PH$HH$LH$HLjH^_H$ILhHLf.H)LGLQLHHD$pHt$0ufDLHHD$0Ht$#fDHHT$H3HHD$HT$H$HXLd$PM@H|$PHHtH|$@vH|$0HtH|$ vH|$HtHH|$pHHuHHATL%USHHL#H}HHCHH{tHPHE HC HE(HC(E0C0HHH(HC[]A\HHL#HUSH@HHHHHHC8HHH5HHH8HCH8HC8HHHUSHHHxH@HHHHHC8HHH5HHH8HCH8HC8HHHAUATIUS@HHHdH%(HD$81LHHHHHHD$HD$ L%H$H(HD$(HD$HD$0HC8H|$HL#HCHH{tHPHD$ HuH{HC HD$(HC(D$0C0HHH8HCH8HC8HHH5HIL#HMHHLHIAWAVIAUATIUSIHHHGH)I)HHH HH9 HHT$H4$H4$HT$Lh HHIt>ID$H I$HBH9I $HJIL$HJHHBBIL$IH9HJ HHBH)IH|:0HI7fH HHJHHHJH@H@H H H9t"HtHJH HHH9uoBLHLl@IVH9~HN HFH)HHt20LH1H HHJHHH@H@HJH H H9t"HtHJH HHH9uoBHGM~HIM&M9t I<$ID$H9tI M9uM>MtLIMnInH[]A\A]A^A_f.HHoBAD$LHH9HuA 11AWAVAUATIUSIHHHHnL$HL$dH%(H$81LHAD$LLLt$$$L$H$PHHD$(I$LHDŽ$$hH$HHD$0IL$$hLLLd$8$$L$@LL$$LE1䉄$X1EH$PvH$@HtH$vH$HtHEHDH$H$vH$HtH$`vH$PHtH$vH$HtH9H$H$H$H$Ƅ$  H$HtSH$HHHH $HyPHH$H$H9u-H9u(H;$uƄ$ DH$HH$H$H$H$H$H$HHD$ HH$HtuHHHtH{HH$vH$HtH$H|$HDŽ$HDŽ$HDŽ$HDŽ$HHDŽ$Ƅ$ H$HtuHHHtH{HHl$0Ht$HH\$(Ht$ HHLHD$pHD$xHDŽ$Hl$8HHH<$LH$HHH\$@HD$hH$IoHD$HD$pHD$HHCHD$VfHH|$QHH$H$H$H9u H9cH$H$H$HL$M$I$ ;L$H$L)uH$H$H)H9HH$H\$h HA$$HH$Ht$xH;$1HH$tRHFHH$H9HH$HFH$HHFH$HDŽ$Ƅ$H Ht$xH9tH$H$H$HnHHH;$Ƅ$D(L$H$L)Mt.$ tAuIIHtH<$HHH$Ht#uHHHtH|$8HHH$@HtuHHHtI~HH$PHt#uHHHtH|$(HHH$Ht#uHHHtH|$0HHHD$pI]ImH$IEHD$xH9H\$pHl$xIEIEIUH$t H;HCH9tH H9uHl$pHtHH$Ht#uHHHtH|$HHH$Ht#uHHHtH|$ HHH$8dH3 %(LeHH[]A\A]A^A_Ht$1LHT$hH$H$HLHH\$hH$@fo$F fDH|$HLH$fDHHLHL$XLD$P:H$H9$LD$PHL$XH$H9$:HHH%fDH)HMH$H$VH$H9$H$HD$h@H$LHHD$@$X $Ht$@HIH$$L$AD$vH$HtA?@HHHH|$@HHL$H$H9$HH$Ht"uHHHtH<$HHH$Ht#uHHHtH|$ HHHHH$HtuHHHtH|$HHHH$HtuHHHtH|$0HHHH|$pHtH$PHtuHHHtH|$(HHHH$@HtuHHHtI~HHH$HtèuHHHtH|$8HHHH$HtuHHHtH<$HHHLd$pH\$xLH9tH}HEH9tH Ld$xHH$vH$HtH$PvH$@HtH$vH$HtH$vH$HtH$`vH$PHtH$vH$HtH$H$HHHH$HtuHHHtH<$HH띾 LHHH$HQIHHH9H|$@HH!HH$H+#HHHH<$HHH$IHL9tHHBHWHlHHAWAVAUATUSHHHHuH?IHI)H)HHH IH9LHT$H}HuLxHT$IIMt oAEH9t8LHHtoHHH9uHGHH)HHM| H9t5HLfDHtoHHH9uHH)HM|HtLeL}LuH[]A\A]A^A_f.HIHH9HuAE1E1 Looking for the following edgesPushing backvector::reserveAdding edge w distance Following edges foundAWAVAUATUSHHdH%(H$1H$H8HtHH7H<$HD$HD$HD$ HHGH8HHtHeHE@H9EHuHEXH@HHxHH!H#HHHu HnHHl$L,HD$L9Lt$0L|$HƐIH HSI)H9D$ HL$0HT$8H9Hto@HxHIHI)LH|$HM @HHoHuHfoD$0HJt%I9mHH H)HH9H<$HHHHH|$H)HHH9H90Ld$PH\$pLt$0M|$5HUHELH<$D$@HT$0HD$8HH9l$H8IHtHtHH{H5HuH{HsLMmLL$PLH?LH|$PL9tH&fDHt foD$0HFHD$@LLHl$HD$gH8HHtHH|$HtH$dH3%(H[]A\A]A^A_Ld$pLI|$H5L+H\$PIt$HLL$PLH8LH|$PHH9tLLLd$pLI|$H5L+H\$PIt$HLL$PLH;LH|$PHH9tLH$L$RIHhII)H>LIH9t:HCHH)HHILLHtoHrHpHHH9uH$H8HtH$MMHl$L0LhL`HD$Ld$pLI|$H5H+H\$PIt$HLL$PLHBHH|$PHH9tLHH|$HtHH|$PHHH9tHLHE1H|$PHHH9tLHHH|$PIHL9tHH_HH=HHCH)HH|HBUSHAHÃH?HHH9IKDL ED:D} HL EH9FI|HtoHPII?IIH9~?FD83DDLIE8~DI@N HH?HHL9|A []@HL 7uH@HII?LHH9t L rHTDDDHBL UAWAVIAUATI)USHIEHIIHo[IAMIMVA}A8}_88_AMA}VHH@8I|&H8} H8H9sH@8PAM{H88AU@~AMA}fDILHM)I~tMH6I^H@HALHHjLLHY^uAEIA $HL1L)LHA$jHXZH[]A\A]A^A_AEA>A}AMVIgBidirectionalPathAWAVAUATUSHHL$@dH%(H$1LIuHL$ IuLH$LHl$HHH\$Ld$x HHfD$@HD$@H\$hHD$D$@HHH$fD$`HD$`HD$(D$`H$(HH$ LfD$pHD$pHT$ HD$0D$pL$ LH$(Hf$H$LHD$8I9Hl$uM9LH|$LckH@0hf$uH|$8HH$ HH)H$(H9D$ HT$ LH)H|$0H\$XL$HH|$(HD$@HfD$PHD$HpHD$PHD$D$PHLf$H$HD$ H$ L$(IHL9ufDHI9tL+H@0hf$uH$ H$(HH9H1LH)H|$ H$HkHH|$HH|$HH|$H1HHDŽ$HDŽ$HDŽ$HDŽ$HDŽ$ HH$HHHH$HHHLH$DŽ$XvH$HtH|$LLH$PvH$@HtH$vH$HtH$vH$HtH$ IGH9tH$H$MuH9ufDH H9H8IHtHtξLHUHuLIuLM$$L$ LHLH$ IGH9tLH H9[fDH$H$H9t%H;HCH9tH 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HcH$(H@oD)$0HD$Hh f.$TL$H$XMSL9t_HLtQI1Ht-o HXHItAPu HXHH$p$xIL$XH$(L_L95HdLH$pKH1Ht/0@LXMMt@AIu LXLIH$@$HL$(H9H$(HL_L9QL/M(L$8Lf.DPE1DA9tIAHcHRL;Lv)A 0HcAH IL;LA9uA?8u*McJfDD@H@8DPE9tAUH$@D$HIXHH/ Iu IXIL9fMcL$(K@oD)$0K@H$HTH H!HI@H9w"L$I!Mx@L9zH9H$(LOL9t_HLtQH1Ht-HXHItAPu HXHH$@$HIL$(8t$HV$HH9|HH$@$HH$PHE1Ht9u]HX HXDAH9HwtHHcH$(HRoD)$0pAEFDH9DAHwuD9uHH$(5DH$@H$pH9($x9$HVfDL/M L$8LDPE1DA9tIAHcHRL9Ls)A 0HcAH IL;LA9uA?8u*McJfDD@H@8sDPE9tAUH$@D$HIXHHIu IXII9uMcL$(K@oDH$p)$0AEFDM+M{L$hLDH1ED9tKB6HcHRL9Ds,D4DDLcAO4vN;D9uց?8u)HcHfDpH@8DHA9tAUH$p$xIXHIZE@u IXII9(HcL$XHvoD)$`&ADf.AwA@H$@Lc$HLML$8LАDXE1DA9AT HcHRL9Ds,B .HcAH IL;DD9uׁ?8u*HcHpH@8hDXA9tA:H$@$HIXMXARL9jHcL$(HvoD)$0UAEnA9DBLH$L)LQH$p$xMRAUH$PMH$P1AL/L_H$@$HMAUvLH$P1AL/L_H$@$HMAU`LkH$PLLO$H1H$@MA:L9AR9fH9$@u$H9$x:H H5H=EAAIDE1I9H$PA9D9IH$pL$(sA9IMcL$(I!IIH}9xHD$0H$(dH3%(H@(MH8[]A\A]A^A_D9HH$(Ht$(H|$HD$PIIHHHE1HL)fH*HL|$0Dl$::increment_slow() [with Node = const btree::btree_node >, std::less > >, std::allocator > >, 256> >; Reference = const restricted::pure_pointer >&; Pointer = const restricted::pure_pointer >*]btree::safe_btree_iterator::reference btree::safe_btree_iterator::operator*() const [with Tree = const btree::safe_btree >, std::less > >, std::allocator > >, 256> >; Iterator = btree::btree_iterator >, std::less > >, std::allocator > >, 256> >, const restricted::pure_pointer >&, const restricted::pure_pointer >*>; btree::safe_btree_iterator::reference = const restricted::pure_pointer >&]path_extend::PathCoverWeightCounter::PathCoverWeightCounter(const Graph&, const std::shared_ptr&, bool, double, std::shared_ptr)path_extend::CoverageAwareIdealInfoProvider::CoverageAwareIdealInfoProvider(const Graph&, const std::shared_ptr&, size_t)int path_extend::InsertSizeLoopDetector::RemoveCycle(path_extend::BidirectionalPath&) constbool path_extend::InsertSizeLoopDetector::InExistingLoop(const path_extend::BidirectionalPath&)path_extend::Gap path_extend::ScaffoldingPathExtender::NormalizeGap(path_extend::Gap) constboost::optional path_extend::ScaffoldingPathExtender::GetGap(const path_extend::BidirectionalPath&, const path_extend::EdgeWithDistance&, bool, const EdgeId&)path_extend::BidirectionalPath path_extend::BidirectionalPath::SubPath(size_t, size_t) constbool path_extend::InsertSizeLoopDetector::CheckCycledNonIS(const path_extend::BidirectionalPath&) constvirtual size_t path_extend::CoverageLoopEstimator::EstimateSimpleCycleCount(const path_extend::BidirectionalPath&, path_extend::EdgeId, path_extend::EdgeId) constvirtual size_t path_extend::PairedInfoLoopEstimator::EstimateSimpleCycleCount(const path_extend::BidirectionalPath&, path_extend::EdgeId, path_extend::EdgeId) constpath_extend::ExtensionChooser::EdgeContainer path_extend::ExcludingExtensionChooser::FindFilteredEdges(const path_extend::BidirectionalPath&, const EdgeContainer&, const std::set&) constvirtual std::vector path_extend::CoverageAwareIdealInfoProvider::FindCoveredEdges(const path_extend::BidirectionalPath&, path_extend::EdgeId, int) constomnigraph::GraphCore::EdgeId omnigraph::GraphCore::GetUniqueIncomingEdge(omnigraph::GraphCore::VertexId) const [with DataMaster = debruijn_graph::DeBruijnDataMaster; omnigraph::GraphCore::EdgeId = restricted::pure_pointer >; omnigraph::GraphCore::VertexId = restricted::pure_pointer >]virtual double path_extend::CoverageAwareIdealInfoProvider::EstimatePathCoverage(const path_extend::BidirectionalPath&) constvoid path_extend::BidirectionalPath::PushBack(debruijn_graph::EdgeId, const path_extend::Gap&)void path_extend::BidirectionalPath::PushFront(debruijn_graph::EdgeId, path_extend::Gap)bool path_extend::SearchingMultiExtender::SearchingAddCandidates(path_extend::BidirectionalPath&, path_extend::ExtensionChooser::EdgeContainer&, path_extend::QueueContainer&, std::unordered_set > >&, size_t)void omnigraph::GapDescription::set_estimated_dist(int) [with Graph = debruijn_graph::DeBruijnGraph]double path_extend::HammingGapAnalyzer::ScoreGap(const Sequence&, const Sequence&) constvirtual path_extend::GapDescription path_extend::HammingGapAnalyzer::FixGap(const GapDescription&) constsize_t Range::size() constvoid Range::shift(int)debruijn_graph::OverlapInfo::OverlapInfo(const Range&, const Range&, size_t)Range::Range(size_t, size_t)Sequence Sequence::Subseq(size_t, size_t) constvirtual path_extend::GapDescription path_extend::LAGapAnalyzer::FixGap(const GapDescription&) constvirtual path_extend::GapDescription path_extend::CompositeGapAnalyzer::FixGap(const GapDescription&) constsize_t path_extend::BidirectionalPath::Length() constvoid btree::btree_iterator::increment_slow() [with Node = const btree::btree_node >, omnigraph::de::StrongWeakPtr > >, std::less > >, std::allocator >, omnigraph::de::StrongWeakPtr > > > >, 256> >; Reference = const std::pair >, omnigraph::de::StrongWeakPtr > > >&; Pointer = const std::pair >, omnigraph::de::StrongWeakPtr > > >*]size_t path_extend::PairedInfoLibraryWithIndex::FindJumpEdges(path_extend::EdgeId, std::set > >&, int, int, size_t) const [with Index = const omnigraph::de::PairedIndex&; size_t = long unsigned int; path_extend::EdgeId = restricted::pure_pointer >]void path_extend::PairedInfoLibraryWithIndex::CountDistances(path_extend::EdgeId, path_extend::EdgeId, std::vector&, std::vector&) const [with Index = const omnigraph::de::PairedIndex&; path_extend::EdgeId = restricted::pure_pointer >]double path_extend::PairedInfoLibraryWithIndex::CountPairedInfo(path_extend::EdgeId, path_extend::EdgeId, int, bool) const [with Index = const omnigraph::de::PairedIndex&; path_extend::EdgeId = restricted::pure_pointer >]btree::safe_btree_iterator::pointer btree::safe_btree_iterator::operator->() const [with Tree = const btree::safe_btree >, omnigraph::de::StrongWeakPtr > >, std::less > >, std::allocator >, omnigraph::de::StrongWeakPtr > > > >, 256> >; Iterator = btree::btree_iterator >, omnigraph::de::StrongWeakPtr > >, std::less > >, std::allocator >, omnigraph::de::StrongWeakPtr > > > >, 256> >, const std::pair >, omnigraph::de::StrongWeakPtr > > >&, const std::pair >, omnigraph::de::StrongWeakPtr > > >*>; btree::safe_btree_iterator::pointer = const std::pair >, omnigraph::de::StrongWeakPtr > > >*]btree::safe_btree_iterator::pointer btree::safe_btree_iterator::operator->() const [with Tree = const btree::safe_btree >, omnigraph::de::NoLockingAdapter >, omnigraph::de::StrongWeakPtr > >, std::less > >, std::allocator >, omnigraph::de::StrongWeakPtr > > > >, 256> >, std::less > >, std::allocator >, omnigraph::de::NoLockingAdapter >, omnigraph::de::StrongWeakPtr > >, std::less > >, std::allocator >, omnigraph::de::StrongWeakPtr > > > >, 256> > > >, 256> >; Iterator = btree::btree_iterator >, omnigraph::de::NoLockingAdapter >, omnigraph::de::StrongWeakPtr > >, std::less > >, std::allocator >, omnigraph::de::StrongWeakPtr > > > >, 256> >, std::less > >, std::allocator >, omnigraph::de::NoLockingAdapter >, omnigraph::de::StrongWeakPtr > >, std::less > >, std::allocator >, omnigraph::de::StrongWeakPtr > > > >, 256> > > >, 256> >, const std::pair >, omnigraph::de::NoLockingAdapter >, omnigraph::de::StrongWeakPtr > >, std::less > >, std::allocator >, omnigraph::de::StrongWeakPtr > > > >, 256> > >&, const std::pair >, omnigraph::de::NoLockingAdapter >, omnigraph::de::StrongWeakPtr > >, std::less > >, std::allocator >, omnigraph::de::StrongWeakPtr > > > >, 256> > >*>; btree::safe_btree_iterator::pointer = const std::pair >, omnigraph::de::NoLockingAdapter >, omnigraph::de::StrongWeakPtr > >, std::less > >, std::allocator >, omnigraph::de::StrongWeakPtr > > > >, 256> > >*]double path_extend::PairedInfoLibraryWithIndex::CountPairedInfo(path_extend::EdgeId, path_extend::EdgeId, int, int) const [with Index = const omnigraph::de::PairedIndex&; path_extend::EdgeId = restricted::pure_pointer >]virtual double path_extend::NormalizedBarcodeScoreFunction::GetScore(const path_extend::scaffold_graph::ScaffoldGraph::ScaffoldEdge&) constdistance_t omnigraph::Dijkstra::GetDistance(omnigraph::Dijkstra::VertexId) const [with Graph = debruijn_graph::DeBruijnGraph; DijkstraSettings = omnigraph::ComposedDijkstraSettings, omnigraph::BoundProcessChecker, omnigraph::UniquePutChecker, omnigraph::ForwardNeighbourIteratorFactory >; distance_t = long unsigned int; omnigraph::Dijkstra::VertexId = restricted::pure_pointer >]bool restricted::pure_pointer::operator==(const restricted::pure_pointer&) const [with T = omnigraph::PairedEdge]bool restricted::pure_pointer::operator==(const restricted::pure_pointer&) const [with T = omnigraph::PairedVertex]virtual std::map >, double> path_extend::AssemblyGraphUniqueConnectionCondition::ConnectedWith(path_extend::EdgeId) 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HoHL)I|$IHHVM$HH?HHI HH9ssH9OH9rsI<$MD$HVHHf.L9Iw3H9HAs_HAHHHPH9rH9vSHLHQI<$LCHH9rH9I$LFLI<$MD$@HH9wLHHL)HMHHHHkH fDHHI HjHLHY^uIfI$LIHL)1HLIIFjHHXZ[]A\A]A^I$LMD$I<$HVf.AWAVAUATUSHHLiL!dH%(H$1D$MM)LHyHfH*Yf.H,H9'I,NlEH8IHtHH8IHtHuhD$HLHHH$dH3%(H[]A\A]A^A_\HH,H1=DLd$@LI|$H5I|$LM>Lt$ It$LLL$ LHTLH|$ IL9tL Ld$@LI|$H5I|$HM>Lt$ It$LLL$ LHSLH|$ IL9tLTM9HHҸ?LH?LLD$HcL$H)HHIƀL$LD$HM$LjL^_M9LMLD$L$t?H7HWHGH9r HHPHPHHH9rHH0I9uLeHUL)HEHHHfHH H*XLD$L$HjLLXLeHUYLD$EL)HL$fHlH=1HLHH|$ IHL9tfDAWAVAUATIUSILHHt$8HT$@dH%(H$1H HD$ T$L H HD$H HD$ H HD$( ${ d$0WL;HkL)HHHfH*Y$ f.H,H9QHM= this->size() (which is %zu)Constructing scaffold graph with length threshold === Stack Trace ===AWAVH5AUATH=USHXdH%(H$H1HHH@HHr{87sCH=HHHHÉIHōCL%L=Ml*DsCH=HHL9H]HtbHH=HHI$H@IH{8uHH H@0L9tHwI$HxLw LH$HdH3%(uKHX[]A\A]A^A_HHH H@0H9HHHHFHHGtH=u @D@SHH HtH;Ht[[ATU1SLfHL+&HHHGHGLHHtHH9LHIH HKLcHEHuII)H9tHLHELLe(L+e HK1HC HC(HC0CLHHtHH9wSLHIHK HK(Lc0HE(Hu II)H9tHLHE8LHK(C8[]A\H;HHtHLAUATUSHLgHI9ImH@I9tlHk HtH=tymHkHtH=uEPUuHEHPE PU 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In file '' on line . Message 'Config not initialized'./srv/scratch/marinovg/spades-cloudspades-paper/assembler/src/common/pipeline/config_singl.hppAUATUSHdH%(H$1=H\$ HH{H5H{H5H{H5H{H5qH{H5 H{H5]H{H5 H{!H5 HHH5HH5HHHsHHT$H4$H=IHH@MMUA|$8At$CLHH<$HEH9tHsHHT$H4$H=IHH@MMA|$8YAt$CLHH<$HH9tH=H==CHt1H$dH3 %(H Hĸ[]A\A]DH=tHHHH=HH HHH@HHHHH`HHHHHXHH HHHHH HHH HH HHHHHH HH HH HHH HH HHH(HH HHH HHhHHH HHHHHHHH HHHHH HH HHH(HH HHH@HH HHH HH HHHPHHHHHHHHHHHHH HHH@HHHHHHHHHHHHHHHHH HHHHHHH5H=BLI$H H@0H9PLCfDLI$H H@0H9L{H H5H=!H<$HIH9tHLI9:?BB'XAUATUSHLgHI9tnIDmtyHI9tPHkHtH=u݋EPUuHEHPE PU uHEHHPI9u@I]Ht7HH[]A\A]DHEHPE f.H[]A\A]AWAVIAUATIUSHHHOHHI)H)HHH4IH9LH$H]HMMH$III)MtHII9t LHLHL$L$HL$L$IODM)L9tLLLIMHtHLmLuL}H[]A\A]A^A_L<FfDHH9-HuME1E1>H=SHtot+[fGPWuHPC PS HPC uHH[H@SHHHC H9tH{Ht [[AUATIUSHHG0H_(H9Hk0H H)HHHH!Ll@IIfDk-L9HteH0H{HC H9tH[HtH=uċCPSuHHPC PS uHHPL9HufDI\$(HtHMl$I\$I9urDmHI9tTHkHtH=uًEPUuHEHPE PU uHEHHPI9uI\$HtHI|$HtdH[]A\A]DHHPC HHPfDHEHPE gH[]A\A]%`0?RC=!  `   (    bg?Q/; #/f{// + /  +   .   /+h/!cp9I\n7\_PN  ;  8  +       0  ,6f;?Q%#U0"   ! 6    8  0IB  /  *    KP N4z<D/j4                Rq B          >  (''"7  W0Q     !   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M   7  eHHGH0Ht HHGH Ht HAUATIUSHHHsLHk(LcHtH=t$mt]HLMuH[]A\A]fEPUuHEHPE PU uHEHPfDfDHEHPE USHHHHo`HGHtH=tqmHs8H{(HHCH[ HtH=tkt\H[]DCPSuHHPC PS AfDEPUuHEHPE PU IDHHPC uHHH@H[]fDHEHPE %HEHPSHHw@HH0HGHHCH[ HtH=tkt/[DCPSuHHPC PS fDHHPC uHH[H@HAUATIUSHHHsLHk(LcHtH=t$mt]HLMuH[]A\A]fEPUuHEHPE PU uHEHPfDfDHEHPE AUATIUSHǰHHwI$I$It$XI|$HI\$ Hu mHLMt}Hk0L+HtH=mHk HtH=uEPUuHEHPE PU uHEHPHLMuDID$I|$1I@HI|$ID$ID$L9H[]A\A]@EPUFHEHPE PU *HEHPHEHPE HEHP/@HEHPE fH[]A\A]Ht3ATIUSHHsLHkHHHu[]A\@HtKATIUSHHsLH{ HC0HkH9tHHHu[]A\f.Ht[ATIUSHHsLH{PHC`HkH9tH{0HC@H9tHHHu[]A\AWAVAUATIUSHHHHwI$ I$0H9tI$I$H9tI$I$H9tI$I$H9t&@H;HCH9tH H9uI$HtHI$I$H9LL)IHILHI!IMiIfDHhHxH9tHHHXH9tH(H8H9tHHH9tHHL}XH]PI9tH;HCH9tH I9uH]PHtHL}@H]8I9t&H;HCH9tH I9uH]8HtHL}(H] I9t&H;HCH9tH I9uH] HtHL}H]I9t&H;HCH9tH I9uH]HtHM9Lt IƘI$HtHA$xI$ I$ I$ I$ H9tI$ I$ H9tI$` I$p H9tI$@ I$P H9tI$ I$0 H9tI$ I$ H9tI$ I$ H9tI$ I$ H9tI$x I$ H9tI$X I$h H9tI$P I$` H9tI$0 I$@ H9tI$ I$ H9tA$tI$I$H9tI$I$H9tI$I$H9tI$hI$xH9tI$@I$PH9tI$ I$0H9tI$I$H9tI$I$H9tI$I$H9tI$I$H9tI$I$H9tI$`I$pH9tI$@I$PH9tA$I$xI$H9tI$XI$hH9tI$I$H9tI$xI$H9tI$I$(H9tI|$xI$H9tI|$8ID$HH9tI|$I(L9tH[]A\A]A^A_H[]A\A]A^A_fI$I$(H9tI$I$H9tI$I$H9tI$I$(H9tI$I$H9tI$I$(H9tI$I$H9tI$I$H9H>I$I$I$I$H96,Ht3ATIUSHHsLHkHHHu[]A\@USHHHHHdH%(HD$81HHHP(Ht$HHl$(HL$8dH3 %(u HHH[]AUATIUSHH_(Hu%DmHLMteHs(H{L#HkHtH=u‹EPUuHEHPE PU uHEHPHLMufIE I}1IHHI}IEIEL9tDH[]A\A]DHEHPE &HEHPz@H[]A\A]AWAVAUATUSHH_H;_HtbHHCHHFHFHCHC HHCHVHF H9tEHSHV HS HVHSF H_HFHFH0H_H[]A\A]A^A_fDoF C DIL+?HIHLHHHH4H9Ht$HD$H|$ILLt[IINIHIVIFHPHP HPIV H9HHIN HH INIVIFAF HHHEH9HP HH0H)H HHHHH!Ht@LHL4DHHH HH HJHHHRHBH0H0H9tQHtHJH@HHJHBHHHH HBHHHJH9uo@ fLDH}Lp0H9HS H0H H)HHHH!H HHt`L2HHH HH HJHHHRHBH0H0H9tIHtHJH@HHJHBHHHH HBHHHJH9uo@ fHDH}HIH]H9tgLk0H L)HHHH!L|III0H{HS H9tH{HtM9LuH}HtLeLd$LuLeH[]A\A]A^A_fDHD$07fAoF @ }HUUUUUUUH9 E1HHk0HD$ General Constructed initial graph vertices and edges in initial graphInitial graphStarting edges in current graphMin scaffold vertex length: Max training gap: Min training length: Created stagesAWAVIAUATIUSIHHHHGH)I)HHH HH9HIH(IoHD$Mt(IUI$IUHIT$tH=BMMnI9LLLf.Ht%HHAHHBHBHAHHHH9uM`HL)L9Il ttHHHtH2HH1HrHBHqHHL9uHLH)HM9HlttM`kM9LtUIH_HtH=u֋SJKuHHRS JK uHHRM9LuM.MtLHD$M>InIFH[]A\A]A^A_ÐHHGHHRS BMMnI9LhL9ufHH9HuHD$E1USHH_HtQL@HCAHtHHK I9rHCE1HuEIu1HI9HGIGH[]fH_1H9_HtHHILEHH HSHw HHH{Ht[[AWAVIAUATIUSHHMnH?LI)H)HHH HH9HHT$I>IMnH(HT$IoH$MtHHI$HBHBID$H9LHDHt%HHAHHBHBHAHHHH9uLgHL)L9Il ttHHHtHHrHHBHHqHHL9uHLH)HL9HltiLgkM9LtMIH_HtH=u֋CPSuHHPC PS uHHPM9LuM.MtLH$M>InIFH[]A\A]A^A_fHHWHHPC HH9%HuH$E13L9eHGH;Gt6Ht%HH@HHVHFHPHHHGHHAWAVIAUAT(USHHIHIHC HsIEIEImIE HAEHkHtKM(HHE HC EHCHCI\$LcHuHu"HmIHuHL[]A\A]A^A_@LHLHC@LLLIEgHLLHHHATUHSHHILU0IHMHEHtYE1LMHHHHHHtT$(HsSHT$8HSHT$@HS HF1HD$HHD$0HD$HHC(HEHD$8HD$@HH|$HtH$dH3 %(HH[]A\A]A^ÐLd$H$MH=utAT$HD$Ld$BAD$HT$LHH|$HtMtLHt$0UIT$HD$Ld$@IT$HD$Ld$CHCHCHC HC(@HD$HD$DHD$HD$0HHt$0HH|$HtHH|$PIHL9tLHH|$HHtMtLAWAVIAUATIUSIHHHHGH)I)HHH HH98HHT$HT$IHI_H$Mt%HIHBHIFtH=@MEM9LLGHHI9t3HtHzHHHHytH=uHGHI9uI}ILL)HL9I\ thILAHHH9t3HtHJHHHHKtH=uHAHH9uIImL)HI\MeI9up@AnIL9tSMt$MtH=uAFPAVuILPAF PAV uIILPL9u@ImHtHH$M}I]IEH[]A\A]A^A_ùHHILPAF f@MEM9>fDI}II9wHH9HuH$E1HATUHSHHILU0IHMHEHtYE1LMHHHHHHt::operator==(const restricted::pure_pointer&) const [with T = omnigraph::PairedEdge]static const Config& config_common::config::get() [with Config = debruijn_graph::config::debruijn_config]St11_Mutex_baseILN9__gnu_cxx12_Lock_policyE2EESt16_Sp_counted_baseILN9__gnu_cxx12_Lock_policyE2EEN13barcode_index32ScaffoldVertexIndexInfoExtractorEN13barcode_index44IntersectingScaffoldVertexIndexInfoExtractorISt3setImSt4lessImESaImEEEEN13barcode_index38SimpleScaffoldVertexIndexInfoExtractorEN11path_extend14scaffold_graph24ScaffoldGraphConstructorEN11path_extend14scaffold_graph28BaseScaffoldGraphConstructorEN11path_extend32ScaffoldGraphPipelineConstructorEN11path_extend37BasicScaffoldGraphPipelineConstructorEN11path_extend36FullScaffoldGraphPipelineConstructorEN11path_extend35GapScaffoldGraphPipelineConstructorEN11path_extend39MergingScaffoldGraphPipelineConstructorEN11path_extend39BinningScaffoldGraphPipelineConstructorEN13barcode_index19TailThresholdGetterEN13barcode_index24ConstTailThresholdGetterEN13barcode_index27FractionTailThresholdGetterEN13barcode_index36AbstractScaffoldVertexEntryExtractorISt3setImSt4lessImESaImEEEEN13barcode_index34ScaffoldVertexSimpleEntryExtractorESt19_Sp_make_shared_tagSt23_Sp_counted_ptr_inplaceIN11path_extend14scaffold_graph13ScaffoldGraphESaIS2_ELN9__gnu_cxx12_Lock_policyE2EESt23_Sp_counted_ptr_inplaceIN13barcode_index24ConstTailThresholdGetterESaIS1_ELN9__gnu_cxx12_Lock_policyE2EESt23_Sp_counted_ptr_inplaceIN13barcode_index38SimpleScaffoldVertexIndexInfoExtractorESaIS1_ELN9__gnu_cxx12_Lock_policyE2EESt23_Sp_counted_ptr_inplaceIN11path_extend14scaffold_graph30UniqueScaffoldGraphConstructorESaIS2_ELN9__gnu_cxx12_Lock_policyE2EESt23_Sp_counted_ptr_inplaceIN11path_extend30NormalizedBarcodeScoreFunctionESaIS1_ELN9__gnu_cxx12_Lock_policyE2EESt23_Sp_counted_ptr_inplaceIN11path_extend14scaffold_graph37ScoreFunctionScaffoldGraphConstructorESaIS2_ELN9__gnu_cxx12_Lock_policyE2EESt23_Sp_counted_ptr_inplaceIN11path_extend29BarcodeScoreConstructorCallerESaIS1_ELN9__gnu_cxx12_Lock_policyE2EESt23_Sp_counted_ptr_inplaceIN11path_extend34BarcodeConnectionConstructorCallerESaIS1_ELN9__gnu_cxx12_Lock_policyE2EESt23_Sp_counted_ptr_inplaceIN13barcode_index27FractionTailThresholdGetterESaIS1_ELN9__gnu_cxx12_Lock_policyE2EESt23_Sp_counted_ptr_inplaceIN11path_extend26EdgeSplitConstructorCallerESaIS1_ELN9__gnu_cxx12_Lock_policyE2EESt23_Sp_counted_ptr_inplaceIN11path_extend27TransitiveConstructorCallerESaIS1_ELN9__gnu_cxx12_Lock_policyE2EESt23_Sp_counted_ptr_inplaceIN13barcode_index34ScaffoldVertexSimpleEntryExtractorESaIS1_ELN9__gnu_cxx12_Lock_policyE2EESt23_Sp_counted_ptr_inplaceIN13barcode_index19ScaffoldVertexIndexISt3setImSt4lessImESaImEEEESaIS7_ELN9__gnu_cxx12_Lock_policyE2EEC{Gz?RQ??GCC: (Ubuntu 7.5.0-3ubuntu1~18.04) 7.5.0zRx 0DXl  4H\p    $ 8 L ` t     (<Pdx4Af I C4Af I C4Af I C<4Af I C\4Af I C|4Af I C4Af I C4Af I C4Af I C4Af I C4Af I C<4Af I C\4Af I C |{Av I O Q 4Kc A H}BBE B(E0A8P@s 8D0A(B BBBG 0BAD G0f  AABH L<BBI B(H0A8L?n 8A0A(B BBBD ."AZ E AzPLRx 0$>BAC  ABA (6<PNdNHx[BBA A(D0 (D ABBF (A ABB0wAAG W AAN DAAHBBA A(D0 (D ABBJ d(A ABB@BBA A(GW (A ABBF ,pBAA G0] DABHBBA A(D0 (D ABBJ d(A ABBH .BBE B(D0A8GP 8A0A(B BBBI P bIM J | p AX G W AX G W AX G W *A_ H AH BBD A(D0s (A ABBJ T(A ABB@UBBL A(D0 (A BBBA  " "H KBD A(G0~ (A ABBC xH04 AAN X AAF v AAH 8 AA F GH\ KBD A(G0~ (A ABBC xH0H BBD A(K0 (A ABBI (A ABB, :GDA dABE,$ RGDA vABK,T bGDA HABI` BBB B(D0A8K@. 8A0A(B BBBH D 8A0A(B BBBJ , :GDA dABE( \AAM`B DAA HD #BBD A(D0 (A ABBJ t(A ABBd BBB B(A0A8DP 8A0A(B BBBG  8A0A(B BBBG P< BBB B(D0A8G 8A0A(B BBBB HL~BBE B(D0A8JP 8A0A(B BBBB g(AAD U AAC "AZ E AHNBBE B(D0A8GP 8A0A(B BBBC DKLBBE B(F0A8M@ 8D0A(B BBBE 0FAD  ABF < BBD A(Q@ (A ABBG \BBD A(G0 (A ABBG C (A ABBG W(A ABBH|BBB 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H1L!HHrL!H9H H5H=H8IHtH1HDžHDžHDž HDžHDžE1HDž HDž1HDžE11HLHI0H@HH{H5M'LHsLLLH1LHIL9tHHHL1111~HpH[LHPFLHHHtHpHtHPHtHHHH;IHtLLH0HtHHHHHILML[[HHHtHHHH>H1H]HIHLHILHH9tHHHH>HHH!111"HHHdd@f.AWAVAUATIUSHHHHdH%(H$1H8IHtHHHLH8HHtHHD$H$H9tzHkPH H)HHHH!LdII fHPH{0HC@H9tH{HtH;HtL9HuH$HtHH$dH3 %(L[H[]A\A]A^A_f.Lt$@LIuI+uHm۶m۶mI~HHH5HLd$ IvHmLLL$ LHHH|$ IL9tLfLt$@LHt$H+4$HI~HHH5HM<$Ld$ IvLLL$ LHLH|$ IL9tLHLHHHHLH|$ IHL9tHLH|$ IHL9tfAWAVIAUATIUSHHxH$H$DŽ$dH%(H$h1HCHDŽ$HDŽ$HDŽ$H$H$H8IHtHD(A I$Ll$`L|$hD$xLHD$`HLI$Ll$Ld$ H$LLHD$L|$@LLLH8IHtH1Ht$LHH\$HD$HH|$@H9t3LgL)HLlIH?HtM9LuH|$@HtHD$(Ld$ L9ttMl$8Hm۶m۶ L)HHHH!HHH)M4 DI8I|$ID$(H9tI<$HtM9MuLd$ MtLH$HH$hdH3 %(HxHx[]A\A]A^A_@L$LHt$HH+t$@HI~HHH5HIEL$IvLH$L$H<$LHAH$IL9tLL$LI~H5IEL$IvLHD$L$H|$LHH$IL9tLf HLH$HHHHLHLH$IHL9tHLH$IHL9tG,G-SHH0HtHP H[H0HtH`(SH_0HtHHP(HH[H@0[HW H9W0t G(8G8HV HIH:HL!~(u(LJLHIHHxLHHV LHHDHy8LI@LH!H9OHWHH!HF H+BL9OHH`SHHHP H[HHH@ HHH@ HH`HH`(ƇHH`0HH`0 @H@0HSHHH0HtHP(H{0HtHPH{HH9t[[SHH~H5H9t?*tuHC[1[SHH~H5H9t?*tuHC[1[SHH~H5H9t?*tuHC[1[u1@HH`H0HtHHH@H9uG,1DH0HtHHH@H9uG-fbasic_string::_M_construct null not valid/srv/scratch/marinovg/spades-cloudspades-paper/assembler/src/common/assembly_graph/core/order_and_law.hpp/srv/scratch/marinovg/spades-cloudspades-paper/assembler/src/common/sequence/range.hpp/srv/scratch/marinovg/spades-cloudspades-paper/assembler/src/common/modules/path_extend/read_cloud_path_extend/validation/transition_extractor.cppnext_pos + mapping_error_threshold >= pos/srv/scratch/marinovg/spades-cloudspades-paper/assembler/src/common/assembly_graph/paths/mapping_path.hpp/srv/scratch/marinovg/spades-cloudspades-paper/assembler/src/common/modules/alignment/long_read_mapper.hpp/srv/scratch/marinovg/spades-cloudspades-paper/assembler/src/common/assembly_graph/graph_support/scaff_supplementary.hppHSHHH0HtHP(H{0HtHPH{HCH9tH߾8[HHWHHGH9tQATUHSHXH)HLdHH8HtL9HuHEHt[]A\Hf[]A\Ht HHGHHH9uMHSHHGH@HtHP(H{@HtHPH{H(H9t [D[fDHOHHATIUSHHGHH9t0H_H)HHlHH?HtH9HuI|$Ht[L(]A\=== Stack Trace ===AWAVH5AUATH=USHXdH%(H$H1HHH@HHr{87sCH=HHHHÉIHōCL%L=Ml*DsCH=HHL9H]HtbHH=HHI$H@IH{8uHH H@0L9tHwI$HxLw LH$HdH3%(uKHX[]A\A]A^A_HHH H@0H9Hptr_.get() == rhs.ptr_.get()end_pos >= start_pos General Detected repeatsidx < size()read unmapped raw paths fixed pathsScaffoldingUniqueEdgeStoragestorage created, empty reference paths@Gt~ @ct0@Tt@au0fD@At~ @Ct1@gt@tt1Ð@v1@t@wFHHcHfD1Dff.f.HGHHuHH 6HHЃ>H@HOHHH 6HHЃ>HЃSHH@HCPH9tH{ HC0H9tH;HH9t [fD[basic_string::substr_RCbasic_string::appendseq_.size() == qual_.size()%s: __pos (which is %zu) > this->size() (which is %zu)/srv/scratch/marinovg/spades-cloudspades-paper/assembler/src/common/io/reads/single_read.hppAWAVAUATIUSHHHVLt$0HD$8D$@dH%(H$1IFHLl$pHD$0I4$IELHD$pHHH+D$xH H5LLLH|$pIEH9tAD$`Il$HM|$@HHl$(fD$AD$bfD$I/HD$IEHD$p I4/I9t"HHH HHHH9uHD$pHT$(Hl$PHHT$xHEIt$(1HD$PIT$ MD$(HL$PHD$XIL9tIHtH=A        " T\"('')W(&()))((''&"("'#'$'$'$(%(%'%)%(&'''(('(())))2057l))A|!n0"1        SHHHC(H9tH;Ht [@[UIHHHATSIHL`Lht#)p)M)U)])e)m)u)}dH%(H81HFH HDž Dž$0H)HEH\$H(H@HHH0AIT$LHI$HcHH8dH3<%(Lu He[A\]/srv/scratch/marinovg/spades-cloudspades-paper/assembler/src/common/assembly_graph/dijkstra/dijkstra_algorithm.hppDistanceCounted(vertex)ATUISHGpHHohHHHDHHIHtH9Y(sHIHuH9|H9Z(wvHHfDHH@HtH9X(sH@HuH9t[H9Z(wUHDHHIHtH;Y(vHIHuH9tH;X(HB[H@0]A\ID$pHwH H5H=HWHH9t\ATUISHXH)HHlHH8HtH9HuI$Ht[]A\Hf.[]A\Ht HUSHHHHtfDHHHuHEH}1H0HH}HEHEH9tH[]fH[]USHHHHtfDHHHuHEH}1H0HH}HEHEH9tH[]fH[]USHHHHtfDHHHuHEH}1H0HH}HEHEH9tH[]fH[]AUATUSHHGHH9twHkPH IH)HHHH!LdIIHPH{0HC@H9tH{HtH;HtL9HuI]HtHH[]A\A]@H[]A\A]AUATUSHHGHH9tqHk8Hm۶m۶ IH)HHHH!HHH)L,@H8H{HC(H9tH;HtL9HuI$HtHH[]A\A]fH[]A\A]HWHH9t\ATUISHXH)HHlHH8HtH9HuI$Ht[]A\Hf.[]A\Ht HVerification of expression 'is_initialized()' failed in function ''. In file '' on line . Message 'Config not initialized'./srv/scratch/marinovg/spades-cloudspades-paper/assembler/src/common/pipeline/config_singl.hppAUATUSHdH%(H$1=H\$ HH{H5H{H5H{H5H{H5qH{H5 H{H5]H{H5 H{!H5 HHH5HH5HHHsHHT$H4$H=IHH@MMUA|$8At$CLHH<$HEH9tHsHHT$H4$H=IHH@MMA|$8YAt$CLHH<$HH9tH=H==CHt1H$dH3 %(H Hĸ[]A\A]DH=tHHHH=HH HHH@HHHHH`HHHHHXHH HHHHH HHH HH HHHHHH HH HH HHH HH HHH(HH HHH HHhHHH HHHHHHHH HHHHH HH HHH(HH HHH@HH HHH HH HHHPHHHHHHHHHHHHH HHH@HHHHHHHHHHHHHHHHH HHHHHHH5H=BLI$H H@0H9PLCfDLI$H H@0H9L{H H5H=!H<$HIH9tHLIHt3ATIUSHHsLHkHHHu[]A\@HtKATIUSHHsLH{ HC0HkH9tHHHu[]A\f.Ht[ATIUSHHsLH{PHC`HkH9tH{0HC@H9tHHHu[]A\AWAVAUATIUSHHHHwI$ I$0H9tI$I$H9tI$I$H9tI$I$H9t&@H;HCH9tH H9uI$HtHI$I$H9LL)IHILHI!IMiIfDHhHxH9tHHHXH9tH(H8H9tHHH9tHHL}XH]PI9tH;HCH9tH I9uH]PHtHL}@H]8I9t&H;HCH9tH I9uH]8HtHL}(H] I9t&H;HCH9tH I9uH] HtHL}H]I9t&H;HCH9tH I9uH]HtHM9Lt IƘI$HtHA$xI$ I$ I$ I$ H9tI$ I$ H9tI$` I$p H9tI$@ I$P H9tI$ I$0 H9tI$ I$ H9tI$ I$ H9tI$ I$ H9tI$x I$ H9tI$X I$h H9tI$P I$` H9tI$0 I$@ H9tI$ I$ H9tA$tI$I$H9tI$I$H9tI$I$H9tI$hI$xH9tI$@I$PH9tI$ I$0H9tI$I$H9tI$I$H9tI$I$H9tI$I$H9tI$I$H9tI$`I$pH9tI$@I$PH9tA$I$xI$H9tI$XI$hH9tI$I$H9tI$xI$H9tI$I$(H9tI|$xI$H9tI|$8ID$HH9tI|$I(L9tH[]A\A]A^A_H[]A\A]A^A_fI$I$(H9tI$I$H9tI$I$H9tI$I$(H9tI$I$H9tI$I$(H9tI$I$H9tI$I$H9H>I$I$I$I$H96,H=SHtot+[fGPWuHPC PS HPC uHH[H@HHHHt HSHHHHtH߾[HSHHHGH{HHHt [[HSHHHXHChH9tH{8HCHH9tH{HC(H9tH{HHHtH߾[AUATIUSHH_Hu%ymHLMtVHkL#HtH=uϋEPUuHEHPE PU uHEHPHLMuIEI}1HIEIEH[]A\A]DHEHPE FHEHPSHH0H{H9t [@[AUATIUSHH_Hu%DmHLMt_H{L#HkHtH=uƋEPUuHEHPE PU uHEHPHLMuIEI}1HIEIEH[]A\A]@HEHPE >HEHPSHH0H{H9t [@[SHHpH{8H[AUATE1USHHH?H^Hte IHHCID$HCHID$tH=@HC1HMLeID$HuHEH HHu@H[]A\A]D@I $HC1HAHuHEHH8tKHIHt HHHCHAHCHHAtH=u@L HHt'Ht$Ht$ILm@ HE0Lm0HHMtH}H0H9tHHUSHXHdH%(HD$1HHHEHCHEHHCtH=ud@HEH{HuoE0HHCHC HE(HC(C8HCHH<$HC0HL$dH3 %(HuH[]Ð@H{HHtHHHHAUATE1USHHH?H^Ht8H{IHCP1HMID$PLeID$PHuHEH HHu#H[]A\A]f.L HIHtH{I$HHCP1HAPHuHEHH8u@HHtHt$Ht$ILmEHE0Lm0HHMtH}H0H9tHHHt3ATIUSHHsLHkHHHu[]A\@Ht3ATIUSHHsLHkHHHu[]A\@Ht3ATIUSHHsLHkHHHu[]A\@Ht3ATIUSHHsLHkHHHu[]A\@SHHHHHHspH{`[AWAVLwAUATIUSHHH_Ht_LFfHCAHtHH{(I9rHCE1HuEIu$I9wAHH1[]A\A]A^A_LH9]toHIMD$Hx(HI9vM9AuV0Ao$LLHD@ HHE(HHغ[]A\A]A^A_@IAM9tE1IE(I9D$AAWAVAUATUSHHHHuH?IHI)H)HHH IH9LHT$H}HuLxHT$IIMt oAEH9t8LHHtoHHH9uHGHH)HHM| H9t5HLfDHtoHHH9uHH)HM|HtLeL}LuH[]A\A]A^A_f.HIHH9HuAE1E1 HGH;GtHtoHHGÐHHAWAVIAUATHUSHIHHHHGH)H)HHH^L4L9iHI ILIwI?HEHEHEHH)HD$HHt$HH9HH|$IwI?HT$HEHEHH9HUtAHHfHtooBAH H H9uH H)HHD HEM$I|$I9LMxHH LL)HHHH!HDvM\L@HtDH@H@HL LHLRLHLPLJLRLHLPLJHHL9uHvH9Il0teHCHH)HHHTfDHt.HHHEHCHCHEHCHCHEHHH9uI9t0MxL)HI\IH9HtI9LuI<$HtKvM,$Il$IDID$H[]A\A]A^A_AKH<H9H|$H3333333HHD$HD$Lt$cHsH;IIFIFII)LHHt"HH9LHsH;IH9IIFMft5HHfDHtoHHH9uHH)HHDHs H{IFIFIF IF(II)LHHt#HH9}LHs H{IH9IFIF Mf(tHHfDHtooBAH H H9uH H)HHD0 HC HC@H{0HC0It$0IT$8HIPL9d$HCPt-H}DHD$HD$HHHAWAVAUATUSHHHHuH?IHI)H)HHH IH9LHT$H}HuLx HT$IIMtoAEoBAEH9t?LHHtooBAH H H9uHG HH)HHM|@H9t=HLDHtooBAH H H9uH H)HM| HtLeL}LuH[]A\A]A^A_ÐHIHH9HuA E1E1AWAVHm۶m۶mAUATIUSHIIHH(HHGH)I)HHHH<H9H|$H$I$IHHD$H$LH $HL$HsH;HHAHAII)LHHt"HH9LHsH;HL$IH9HHALat@HHHtooBAH H H9uH H)HHD0 Ht$HS HFHF(H~HFHsHM'M9H$fHMl$M+,$HHCHCLHHtHH9LIHHCLkIt$I<$H9t>HHfDHtooBAH H H9uH H)HHD0 HCHC(H{HCIt$IT$ HI8HC8M9t7HHD$HD$H<H)HfDMgHpM9H\$IHHuH}HHCHCII)LHHtL9LHuH}IH9HHCLktfDHtoo@BH H H9uHG HH)HHMt HMI H9t=HLDHtooB@H H H9uH H)HMt HtILmLuMLmH[]A\A]A^A_fALHfDHI9vHIMuE1HMtLHHAWAVIAUATIUSHHHHHGH)I)HHL$L9'HIHT$HT$IMtHIIVLIFIVH}LMH9Ht>fDHtoo@BH H H9uHG HH)HHMt HMI H9t=HLDHtooB@H H H9uH H)HMt HtILmLuMLmH[]A\A]A^A_fALHfDHI9vHIMuE1HMtLHHAUATIUS8HMl$HoH@ HCI\$HHE0t\H}(fDHSHtHHs(H9rHS1HuHu'H9w,HHH1[]A\A]LI9\$u6HI9տuALHID$(HH[]A\A]DHHH}(Hp(H1HB(H9E(@AWAVAUATIUSHHIHHHHI)H)HHHH4IH9LHT$I $I|$HhHT$IIMt-HHIHBHBIGHBHBIGH9LyHH HL)HHHH!HTvMLfHtDHBHBHLLHLHLBLJL@LHLBLJL@HHL9uHvH9Il0teHCHHH)HHHTHt.HHHEHFHFHEHFHFHEHHH9uH9t4LyL)HH\ fIH9HtI9LuI<$HtM4$Il$Ml$H[]A\A]A^A_@L,vI,fDH H9HuսE1E1#H9HGH;GtVHtDH@H@HHHHHNHPHHHVHNHPHHHVHHG@HHAUATLgUSH(H^H.dH%(HD$1H$HD$IH9HD$tQH11I,@HtoHH9HD$t&HD$Ht$HH9uHLH9uLLH<$HtHD$dH3%(u H([]A\A]H<$HHtH_Map_base::atAWAVAUATIUSHHH1IHuHEL,MtfI]IHKP!HHtPHHP1IHHHuI9u8I9uHsLtIEHtHH[]A\A]A^A_H=/t vector::_M_range_insertH9'AWAVHAUATIUSHH)HLGH_IIL)MHL9MI)MIM9LMI)M9t LLڐHtoHHI9uI(LH)HWHHH~DIAoIHAuH~@oIHAAIuH[]A\A]A^A_fIH?MHIHHHI)IL)I9M9MBMI9MILI>MFIIH9Lt:HHtoHHH9uHGHH)HHIDHLHtoHHH9uIL)HL9Hl(t3HH@HtoHHL9uHsH)HHlHtM>InMfH[]A\A]A^A_fDJ"H9t!M@MtoAHIH9uM)IMI9L_t$LHtoHHI9uMML_6oIHAAHuH[]A\A]A^A_f.I\@E1E1bH=AUATUSHHH,HttH]ILC %DHHtpL@ 1HHLHwH9uXL9uHCI9D$uI$HCIL!L!H9tI$L!L#kL9u&HH[]A\A]H1[H]A\A]H H5H=HATUHSHHILU0IHMHEHtYE1LMHHHHHHt 0 || size_t(-shift) <= start_posAWAVIAUATUSHHdH%(H$1Ht$H8HtHH(H$@Iw IW(1HGH|$(HH$@H$`H$HHEHEHE1HD$ H$HEHE HE(HD$0H$HD$H9sIIG HI HH@u L1HE1HH9$)H$AH2~tIcLH|$ H$Ht/u HD$H$HH9tH8HHtHH8HHtHHD$(H$@HH9tH$dH3 %(H)H[]A\A]A^A_@H$1)$o@)$o@H)HHm۶m۶mHH)$$$H$$$$$H@#H|$H|$(H5IuHD$L$LHt$0HpL$H|$0LHs1H$IL9tH|$>H|$H|$(H5L$H5H Iغ 1LH$H$H|$(H5 HHD$XH|$XLH$IEH9tHD$0Ht$LHHHD$0L$H|$0LHu1H$IL9tH|$qH|$H|$(H5IuHD$L$LHt$0HpL$H|$0LHw1H$IL9tH|$H$HH}H5L$LD$@H5H 1LH$H$H}H5HH$IEH9tHuLHL$LH~1HH$IL9tHYH\$HHT$pHHC&HUHEH)HHHH|$HH$IHL9tHHHH$IHL9tStarting dijkstra run from vertex Priority queue initialized. Starting search already counted. Proceeding to next queue entry.Check for processing vertex failed. Proceeding to the next queue entry.Finished dijkstra run from vertex Dijkstra iteration startedVertex with distance fetched from queueDistance to vertex is found to be at distance from vertex UHAWAVAUATISHH8HdH%(HE1H8HtH1I% HHspHCPHDž HDž(HDž0HHC`LHHHChHHCpHǃHHCxHHHHHHHǃHǃHHHHHHH(H;0HǃHǃHHHHCHHDž@HDž`HDžpHHHHPHHXHhB Ht.fo@foPFfo`F HpHF0H8H(oFHHH 1)oF)oF)HFH)HHHm۶m۶mHHHH@H HHHHHRHtH9J(sHRHuH9HtH;H(s$HHHHHHH@8H@HHP0HP@H8IHtH1Z H@L HHHH(H9 {HH8IHtH1H HHHLo(oGLg0)HHGLw HHHHDHHRHtH9J(sHRHuH9HtH;H(s+HHHHHH HLp8Lh@L`HHp0H(HHPH)H8H(H8IHtH1HCpHHtNHHfHH@HtH;P(vH@HuH;Ht H;Q(HHHfoH)IH8HtH1HCPHH;C@HCPwCXH8IHH1LLHH5IvLM$$L LH1LH8IHLXhH@pH!HwHtXLHH@HtH;p(vH@HuI9t0H;w(r*EtMIuI;uM@@ItPHtL&LFHIuHH9[A8RH8L[]A\A]A^A_IuI;uMLCIuIM+ULHHAL?L9?ILHT$(LL$ L$LT$LD$L$L$IuHT$(LL$ LT$LD$L$ItM"MBI}I9 IIDMt AoAIIM9uLGMM)MINdII9t9MMMt AoAIIL9uIL)HMd4Ht4HT$ LL$L$HD$L$L$HT$ LL$HD$L$IELMeIEHpAHI91MHII)/srv/scratch/marinovg/spades-cloudspades-paper/assembler/src/common/assembly_graph/paths/path_processor.hpp!reversed_edge_path_.empty()curr_len_ >= lenPathProcessorPopping edge ()AWAVAUATUSHHhdH%(H$X1HGXH9GPIL#`HHHH $Il$ H+hH9k8H8IHtH1IT$8HH|$LkhH!H#1HHH@HD$HHL$HspHHLHt/H0Ht'HFHHHHFHHkXH)k8Hk@H$XdH3%(Hh[]A\A]A^A_L|$@LIH5 HL$LHD$H4$I}H5HH$HL$It$ H<$H+qH5HHD$ IuHH$LHT$(Ht$ IH$H|$ HH9tIwLM6L$LHX1LH$IL9tLf.H9k8H H5H=VfHLEHLH%HCXH9CP:H H5H=SHLHH$IHL9tLHH$H|$ HHH9uAWAVAUATIUSHH8HOHHL$ HHD$(H!IHD$fDHL$LLMMHA8It$hL!HID$pL!HLyt3IHDIHRHtL;z(vHRHuL9tM;x(s'Ht$LL$ID$pLL$Ht$H{HIIH@HtL;x(vH@HuL9LM;x(BHDHHRHtL;z(vHRHuH9tL;x(HBM!L@0LIA8MbhL!H8IBpL!HLt5MH@IHRHtL;z(vHRHuM9t M;y(Hs)LT$LD$LT$IBpHLD$HMfIH@HtL;x(vH@HuM9tXM;y(rRLDHHRHtL;z(vHRHuI9tL;x(IBIL9@0v>AoEAEfDH H5H=fHD$(HEHD$ HEH8[]A\A]A^A_AWAVAUATUSHH9HT$H_H9t|Ld$HIIfIH3LHSMFL{tRLIwIOL)LHHH~LfHo@HuI6INI9LuH[]A\A]A^A_Ht$HHAWAVHAUATIUSI?IIHHLHt$ HT$HH $LD$0H9LL$8HD$9HD$8IHHD$fIoH|$Lt-HHMfHuHUMIIIMMELDMDIL;d$AoEB;M|HLID$uL|$ILH?LHH9HCLl$8HH?HHH;\$ IILMHI,4MBhHEL!Hx8IBpL!H?L!HHOt/MH IHRHtH;J(vHRHuM9tI;I(s0LD$HL$LT$LT$HL$LD$IBpHHMfIH@HtH;H(vH@HuM9I;I(zLDHHRHtH;J(vHRHuI9tH;H(IBLH0H$ML!Hp8ICpMChL!H>L!HHOt9MHIHRHtH;J(vHRHuM9t I;J(Hs=L\$LL$(LD$HL$L\$ICpHHL$LD$HLL$(MDIH@HtH;H(vH@HuM9txI;J(rrLDHHRHtH;J(vHRHuI9tH;H(IBHLL9H0vnIVoEHH?HHL9t$ LI@H H5H=D$H\$ 4H\$ HLH$HHD$0HCHH[]A\A]A^A_HDHHHAoAHHH\$ AWAVAUATUSHhdH%(HD$X1HHT$@Ht$0H)H= HIHHGHIHD$8HD$PHD$HL)HD$8H|$HHLt$0Hl$@IH\$PI?H0HPIInIIMI $MD$INI4$IT$MFH|$HIUIEAo$AEI$ID$IEHl$8Ld$0@L!LHl$ HH8MMIFpIvhL!H L!HHIt5HHHHRHtH;J(vHRHuH9tH;O(s0Ht$HL$LL$IFpLL$HL$Ht$HHHfHH@HtH;H(vH@HuH9H;O(HDHHRHtH;J(vHRHuH9tH;H(HBM!L@0LIA8IrhL!HIBpL!HLqt5HH@HHRHtL;r(vHRHuH9t L;w(Hs3LT$LD$Ht$LT$IBpHHt$LD$HHHH@HtL;p(vH@HuH9L;w(HDHHRHtL;r(vHRHuH9tL;p(HBL9@0FMt$Hl$(LfIELHl$LeL!IqhHH8IApL!H L!HLqt4HHHHRHtL;r(vHRHuH9t L;w(Hs)LL$Ht$LL$IApHHt$HHfHH@HtL;p(vH@HuH9|L;w(rHDHHRHtL;r(vHRHuH9tL;p(HBMLH0LM!I@8MbhL!HIBpL!HLqt:LHfHHRHtL;r(vHRHuI9t L;w(Hs)LT$LL$LT$IBpHLL$HLfHH@HtL;p(vH@HuI9|L;w(rvL HHRHtL;r(vHRHuI9tL;p(IBHL9H0Ld$Hl$(L9sJHUHEAo$EI$ID$HHEH H5H=HT$@Ht$0HHHL)H=H|$@Hl$0HLxHIMIMII $MD$IHLLIMuLt$ IAoEL1IMFL)AHILHIHHD$XdH3%(Hh[]A\A]A^A_H|$8HD$0H7HWHHL@H|$HtjIEIUAoEIEIUAERHD$8HMLEH|$HH0HPtIUIEHL$0oAAEHQHAIEIT$HMI4$LEH|$HIUIEHt$ Got to vertex Maximal count Pushing edge of recursive calls was exceeded!Iterating through incoming edges of vertex AWAVAUATUSHHdH%(H$1Ht$PHT$XHL$ H8HtH1HHEHHH= HEHHEHHH9L$XH8HHtH1oH$HDŽ$HDŽ$HDŽ$HHT$PHH!H#BHHHHu HHHIIHL$L$M9L?HL)LLHHHH?HH)HHHLLH$L$L9HD$2HD$pIHD$(H$HD$0H$HD$8DI$It$HHD$L!Ht$IH@8HOhHL!H0HGpL!HL~H^L|$`H\$hu@HH@HtH;X(vH@HuH9lH;Z(bHt$`HT$hHHU8H+QIV HH;E 3HE0H9E@%H}HHD$L$H$HD$pHD$HD$xH8HD$HtH1HT$pHE8H}PHt$(L!HB HH+BHE@HE8H$H}hHHL$ LHHHHt[L$jHL$h1LD$`H}hHHupHLHHHHxƅIL9d$ L$1MtLH$dH3 %(H[]A\A]A^A_H8HHH1L$`LI~H5I~ H5HL$IvHmLL$LHr1HH$IL9tLDIHLHHHHI9uVL$`LI~H5L$LD$XH5H 1LH$H$I~H$ID$H9tIvLHL$LHp1HH$IL9tL@L$`LI~H5+Ht$XI~L$IvHLL$LH{1HH$IL9tLH|$0H|$8H5 HHL$xL$`LHD$HD$pHL$@HD$HHt$@I~H5HHD$@HD$HH|$@L!Hp HD$H+pH5HH$IvHHD$LH$H$H|$8HD$H$HH9tHD$HL$0LHHqHD$L$`H|$LHK1H$`IL9tH|$0HpH|$PJHD$ H9E8;H}(HuPHP(HHWH)HHH$`IHL9tH|$0H$HtHH$IHL9tLHHHL|$H$HIL9uLHyHqProcess launchedStart vertex is Bounds are End vertex curr_len_ == 0curr_depth_ == 0vertex_cnts_.size() == 0dijkstra : vertex limit exceededProcess finished with error code AWAVAUATMUSHHdH%(H$1Ht$H$HL$LL$H8HtH1H}{pKH8HHtH1AH8IHtH1AH8HHtH1[H8IHtH1UHD$Ll$@Ll$ H\$ HI}PHD$XHD$`HD$(H$HD$hHD$pHD$xHDŽ$HD$0HD$HDŽ$HDŽ$HDŽ$DŽ$?HD$8HD$HDŽ$HDŽ$HDŽ$Ƅ$HD$HH$HD$PIH$HCH$H$IuI}hH$HH$HT$0HGpHwhHt+H HH@HtH;P(vH@HuH9tH;Q(sjH8HHtH1$I}hH|$pHtH$dH3%(D HĘ[]A\A]A^A_Ht$(HT$0H;D$@wHL$8Ht$(LHT$0H|$XH|$` HL$01MEI}hHH$HLHHH HPHHPHHPH$HH$H$A E1L$LI|$H5!I|$DH$It$HHL$LH1HH$HH9tLDL$LI|$H5 H$L$H5H 1HH$H$I|$H$HEH9tIt$HM6L$LH1LH$HH9tL@L$LI|$H5 Ht$I|$H5HILLLuH$It$HL$LH1LH$HH9tLL$LI|$H5H$LCH5H 1HH$H$I|$H$HEH9tIt$HM6L$LH1LH$HH9tL@L$LI|$H5LuH$It$HL$LH1LH$HH9tLfL$LI|$H5LuH$It$HL$LH1LH$HH9tLfH|$X H H5H=H|$`H H5H=HpI}hH$fDAH$H H5H=DHpI}hH$HHH9tLHHHI}hH|$pHtHLH$HHH9txsTrying to close gap between v1=Several closing paths found, first chosen and v2=Path storage callback createdDijkstra launchedDijkstra finishedPaths processedFailed to find closing pathUnique closing path foundTaking answer Gap closedCumulative closure length is UHAWAVAUATISHHHLdH%(HE1HH9HHLSH8IHtH1HHHDžHDžHDžHHHHHH8IHt$HH1HHHLHLHDžh ƅpHHHH HHLHH(H0H8HH`I$HHMH@HHHI$HPHDžxHHHXƅDžHDžHDžDžHDžHHI$HDžDžHDžHHHDžH8IHtH1HI|$LH8IHtH1 HHLEHLj1LLXZHI$HI$HI|$xH8IHtH1HHHH)H9HH8IHtH1?H8IHtH1HE1HKH3II)LHHt%HH9XLHKH3IKD%H9HHLHHtoHHH9uHHH)HMd H8IHtH1H8IHtH1HM.MfIFHHHHH]dH3%(LVHe[A\A]A^A_]H8IH}H1gH@HH{H5L HsM$$LL LH1LfHHIIFIF fH@HHHH{H5I$L HsLIL LH1LH IL9tHfDH@HH{H5IL HsLHL HLH1H IL9tHDH@HH{H5HH{H5HIHLIL HsLIL LH1LH IL9tHf.H@HH{H5IL HsLIL LH1LH IL9tHpDH@HH{H5L HsM$$LL LH1LH IL9tH{H@HH{H5L HsM$$LL LH1LH IL9tH@H8IHtH1:IIFIFfDH@HH{H5L HsM$$LL LH1LH IL9tHH@HH{H5IL HsLHL HLH1H IL9tHDH@HH{H5HM9HEHL@LL1HI@HHH!HR L)HH9uLH{IL HsLHL HLH1H IL9tHMH@HH{H5L HsM$$LL LH1LH IL9tHE1IHHHHLI|$HIH IIL9tHH IIL9tHMtLtHI|$IHHQIIxH IIL9tHLIH IIL9tHLIH IIL9tHMHHII>4/srv/scratch/marinovg/spades-cloudspades-paper/assembler/src/common/modules/alignment/kmer_mapper.hppthis->IsAttached()answer != valAVAUIATUSHH@dH%(HD$81~(oHHB I~HoBAVDHC CHHhH0H\Ll$HEf8(LHD$HD$HD$ HD$(Ld$0IIJHL$0tHHHJ!DA~PHC HPHHt$HD$H9u~1 fILH9 u)HH9uHC HPHHt*HD$H9uD1I|H9HTHHHDH ?>HЃ8tC8H+;Lk(HD$HD$HD$ HD$(Ll$0MMIA?MH|$JH|$1f.H HH HI9uLL E1AJߺHЉDI4H!I#HHHH1HuJIM9rMtHDHHJ!DHD$0y7HpHH1foD$HuHEL$HD$0HiHU)D$@HD$`HՀfoD$ )D$PHpH|$@HHH4IH$EIHT$DHEHEHMM1HpGfDD9tWdtRIt(LHI1HHH1L1IL1IL8HH@LH&HIHVIJHsD9nH}HcLHHHgLoHHHHW(H H?H4HH!H9vyITM\IUUUUUUUUH33333333IIHHIIM!L)IHH!I!ILHLL!IH8HI9uHHHUUUUUUUUHI#THHH!H33333333H)HHH!H!HHHHHH!HHH8HLHs0HD$hdH3%(Hp[]A\A]A^fC8H;HsHC0LH}H1HI1LHL1L1IL1ILHHE@LIMt]I0HN #@HHtHHH 1IHHHI9u1I9uHT$H$H3VH3FH uIHf.H@A@M)MEJtH|$EL1DHHDIHtIILLH HI9AHAtHCDHJDIfDH=HL1AAL@DLZLHHHHHt)LH0HHHHHPH9uIHL@H=L1AAL@DLZLHHHHHt%LH0HHHHHPH9uIt HLH=4HIIL9uH=HCDAH|$HHD$xH8Hp*1E1/srv/scratch/marinovg/spades-cloudspades-paper/assembler/src/common/assembly_graph/index/edge_position_index.hppedge_id != IdType() || clean()SHH H7HWdH%(HD$1HH҉ODGHD$H$tnHHHD$H$tHD$dH3%(ubH [@HHt׃{tH H5H=@Ht {tHSr/srv/scratch/marinovg/spades-cloudspades-paper/assembler/src/common/modules/alignment/edge_index.hppAWAVAUATUSHHHLdH%(H$1LD$A(H~HNLd$`HF MWPLHVH|$pLHL$xH$LT$`LD$hH$HDŽ$Ƅ$Ƅ$H$HHt IWPH;B(r31H$dH3%(Hĸ[]A\A]A^A_$$IG8HIHЋPD@J]H|$@H1Dt$PAFeHH#D$@HHD$DL$HD$M>E1fIM9 HD$H|$J4(LCL-HHth>H@8t@Ht$A(Ht$LH H5H=OL$MIz1E1 @HFHIHL9HLH>HThHHHDhH ?>HЃ8tQLH$h@$$H$H @IG8HȋpD@NEH|$@H1D$PfoD$@)D$ H9HD$0H{H9;HGH9D$(H;{foD$ HH{HD$0HHr6HHr-H|$Ht$@HD$PHl$@HL$HHT$XH H5H=#$LH$IW8H@Ho)D$@H@HD$PDHt$ HtHT$HRH9j+H{H;{H MF1E1!DHGHIII9WHLЉH>HthLHHDhHC >HЃ@8tLL$f.LH$IO8H@Ho)D$@H@HD$P3DHT$ HH2HH#H|$@HHI HP@L))Hp8H|$0HOH;JHHJHj;@HH#H|$@HHI H+$Hp8)HP@AWAVMAUATIUSHIHdH%(HD$x1EHT$DL$HAHuHIXHxHSH!HG H+FH9Le HH$Jt"ILC $H$HIt>H@8H\$PHuLHHT$MLHH15HGPDHxHHHtH8uHT$MLLHHT$xdH3%(HĈ[]A\A]A^A_DH#H Hȃ}(H>1HHHH9HD$2HE HL`LC $HID>H$HH9\$HCH;LHD$(HH|$ H!H:$uHt$ LHT$HHHt$0LHD$8HT$0HD$@HD$HD$HHHHH HBH)HHHHCD$HSHAH+HHH HHH H5H=#/srv/scratch/marinovg/spades-cloudspades-paper/assembler/src/common/sequence/rtseq.hppsize_ == 0 || is_dignucl(s[0]) || is_nucl(s[0])offset + size_ <= this->size(s)size_ <= max_size_AWAVAUATUSHHdH%(H$1HF H;BHD$ HD$(HD$0HD$@HD$HHD$PvaHHGHGHGHG HG(HH$dH3%(HĘ[]A\A]A^A_fDIIH=H$LH+L$M9|$M1L1E1H$Ll$HD$`HD$hE1HD$pHD$xILL~DHIHH I@uJl`E1I1IL9$wMH$Ll$t Jl`IILt$`wLt$`KIIuHD$@HL$ E11LLIHD$HL$Im I;l$AHD$XH,$HD$DHLH HVH9uH$HNJ|`HH>HHH JD`HLD$HL$HH+$ELLI9l$AIE H$ 1LDAD~D@L$@DH H5H="::get() [with Config = debruijn_graph::config::debruijn_config]virtual path_extend::validation::ContigTransitionStorage path_extend::validation::ApproximateTransitionStorageBuilder::BuildStorage(const std::vector >&) constvoid path_extend::validation::ContigTransitionStorage::InsertTransition(const EdgeId&, const EdgeId&)void omnigraph::PathProcessor::Traversal::Pop() [with Graph = debruijn_graph::DeBruijnGraph]distance_t omnigraph::Dijkstra::GetDistance(omnigraph::Dijkstra::VertexId) const [with Graph = debruijn_graph::DeBruijnGraph; DijkstraSettings = omnigraph::ComposedDijkstraSettings, omnigraph::BoundProcessChecker, omnigraph::BoundPutChecker, omnigraph::ForwardNeighbourIteratorFactory, long unsigned int>; distance_t = long unsigned int; omnigraph::Dijkstra::VertexId = restricted::pure_pointer >]bool omnigraph::PathProcessor::Traversal::Go() [with Graph = debruijn_graph::DeBruijnGraph]bool restricted::pure_pointer::operator==(const restricted::pure_pointer&) const [with T = omnigraph::PairedVertex]size_t Range::size() conststd::pair omnigraph::MappingPath::operator[](size_t) const [with ElementId = restricted::pure_pointer >; size_t = long unsigned int]void Range::shift(int)void Sequence::InitFromNucls(const S&, bool) [with S = std::__cxx11::basic_string]bool restricted::pure_pointer::operator==(const restricted::pure_pointer&) const [with T = omnigraph::PairedEdge]debruijn_graph::EdgeInfo::EdgeInfo(IdType, unsigned int, unsigned int) [with IdType = restricted::pure_pointer >]const std::pair debruijn_graph::EdgeIndex::get(const KMer&) const [with Graph = debruijn_graph::DeBruijnGraph; typename Graph::EdgeId = restricted::pure_pointer >; debruijn_graph::EdgeIndex::KMer = RuntimeSeq<128>]debruijn_graph::KmerMapper::Kmer debruijn_graph::KmerMapper::Substitute(const Kmer&) const [with Graph = debruijn_graph::DeBruijnGraph; debruijn_graph::KmerMapper::Kmer = RuntimeSeq<128>]Range::Range(size_t, size_t)RuntimeSeq::RuntimeSeq(size_t, const S&, size_t) [with S = Sequence; long unsigned int max_size_ = 128; T = long unsigned int; size_t = long unsigned int]void io::SingleRead::Init()St11_Mutex_baseILN9__gnu_cxx12_Lock_policyE2EEN5boost12noncopyable_11noncopyableESt16_Sp_counted_baseILN9__gnu_cxx12_Lock_policyE2EEN2io10ReadStreamINS_10SingleReadEEEN2io14FileReadStreamEN2io17DelegatingWrapperINS_10SingleReadEEEN9omnigraph16LengthCalculatorIN14debruijn_graph13DeBruijnGraphEmEEN9omnigraph20VertexProcessCheckerIN14debruijn_graph13DeBruijnGraphEmEEN9omnigraph19BoundProcessCheckerIN14debruijn_graph13DeBruijnGraphEmEEN9omnigraph16VertexPutCheckerIN14debruijn_graph13DeBruijnGraphEmEEN9omnigraph15BoundPutCheckerIN14debruijn_graph13DeBruijnGraphEmEEN14debruijn_graph14SequenceMapperINS_13DeBruijnGraphEEEN11path_extend10validation24TransitionStorageBuilderEN11path_extend10validation30StrictTransitionStorageBuilderEN11path_extend10validation31ReverseTransitionStorageBuilderEN11path_extend10validation33ConjugateTransitionStorageBuilderEN11path_extend10validation31GeneralTransitionStorageBuilderEN11path_extend10validation35ApproximateTransitionStorageBuilderEN14debruijn_graph22AbstractSequenceMapperINS_13DeBruijnGraphEEEN14debruijn_graph19BasicSequenceMapperINS_13DeBruijnGraphENS_9EdgeIndexIS1_EEEEN2io9RCWrapperINS_10SingleReadEEEN9omnigraph13PathProcessorIN14debruijn_graph13DeBruijnGraphEE8CallbackEN9omnigraph19PathStorageCallbackIN14debruijn_graph13DeBruijnGraphEEESt19_Sp_make_shared_tagSt23_Sp_counted_ptr_inplaceIN2io14FileReadStreamESaIS1_ELN9__gnu_cxx12_Lock_policyE2EESt23_Sp_counted_ptr_inplaceIN14debruijn_graph19BasicSequenceMapperINS0_13DeBruijnGraphENS0_9EdgeIndexIS2_EEEESaIS5_ELN9__gnu_cxx12_Lock_policyE2EESt23_Sp_counted_ptr_inplaceIN2io9RCWrapperINS0_10SingleReadEEESaIS3_ELN9__gnu_cxx12_Lock_policyE2EE?333333?GCC: 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IuHM}(IuAGLHLIEH(IE0H IE8IEHH@ H9wPH=IHIGHIwIIEH HMo(IOHIWIO H(LMg0HIG8H IG@HIGHHLIGIHHH@ H9HHHH(HHpH5H0HpHpH HxHPHpHHHy(H{0foH9HA HA@A0jHtH@1HH(HFH H4HC0H(Hs@HDžHDžxHpHHyPHDžHDžHDžHAHH(HsxHH(HHH@ H9H{xH{@HH LIH(IFLH8HtHPLH]dH3%(LrHe[A\A]A^A_]H @HIHL8IEHH0IEIEMHmH=IG+AGH5AGIU IuHM}(IuAGLHLIEH(IE0H IE8IEHH@ H9,XH=IHIGHIwIMIEHHMo(IWHIOIW H(LMg0HIG8H IG@HIGHHLIGHIGPIHHH@ H98HHmL@LI|$H5M/L It$LL LHJLH IL9tLHH IU M}(IMIufH5IU M}(IuHIuHIU IE(IEHIEH(IE0H IE8HIU IE(IEHIEH(IE0H IE8H5HH HMo(IGHIGHIG AEAEHMo(IGHIGHIG AEAEH5LHqH5LH@H5LHHQ@HQHHQ@~H5LHIHLLLH8HtHPLHHHHLHH HLHH9tHHq@UHAWAVAUATISEHL HHHHHdH%(HE1LHLILHHLHHHLHPLHHHHHMHHHHHHHxpHHHx8HHHEMLHH8IHtHuLs(HHHHjLXZPLHHHCHH{HHHHHHH=@HHPHHHXt@HHMLHXHtHHtHH5HP H=HSHHHHOLPHXH`HhHpLxHHHLHHpHtH`HtHHHtHHtHHtHMdH3 %(HHe[A\A]A^A_]fD@HHHHPHXHBbYfL@LIH5HIHpIL IwLHL HLH5H IL9tLfHCHHsWLPHXH`WHhHpCHHPHHHX+H=HHHHtHHtHHHHtHHHHHXIHtHHtHLLPHXHDž`HhHpLxHpIHtH`HtHL3LPHXHDž`HhHpCLxHLH IHL9tHG(H9G8HG(H9G8HGHHH@ HHH@ HHH@`X0P@PX (HPSHH~H5H9t?*tuHC[1[SHH~H5H9t?*tuHC[1[SHH~H5H9t?*tuHC[1[SHH~H5H9t?*tuHC[1[SHH~H5H9t?*tuHC[1[SHH~H5H9t?*tuHC[1[SHH~H5H9t?*tuHC[1[SHH~H5H9t?*tuHC[1[SHH~H5H9t?*tuHC[1[SHH~H5H9t?*tuHC[1[SHH~H5H9t?*tuHC[1[SHH~H5H9t?*tuHC[1[ScaffoldBarcodePutCheckerChecking vertex Id: First id: Second id: Target reachedChecking/srv/scratch/marinovg/spades-cloudspades-paper/assembler/src/common/modules/path_extend/read_cloud_path_extend/scaffold_graph_dijkstra.hppAWAVIAUATIUSIHdH%(H$1H8HtH1IMH8HHtH1H8HHtH1H8HHtH1MtOIt$Lt-H8HHtH1W1GIt$ LuH8HHtH1I|$0LHH$dH3 %(lHĸ[]A\A]A^A_H\$ HH{H5 I|$H{HL}HsHHL $LHy1LH<$HH9tHH\$ HH{H5LH{HL}HsHHL $LHx1LH<$HH9tHfH\$ HH{H5It$HLHHT$H4$H{H<$HEH9tHsHM?L $LHw1LH<$HH9tHH\$ HH{H5 I|$ H{HL}HsHHL $LHz1LH<$HH9tHH\$ HH{H5LuHsHHL $LH1LH<$HH9tHH\$ HH{H5LeHsHHL $LH}1LH<$HH9tH1}IHLH<$HIH9tw-.  ,      .      basic_string::_M_construct null not valid/srv/scratch/marinovg/spades-cloudspades-paper/assembler/src/common/assembly_graph/paths/bidirectional_path.hpp/srv/scratch/marinovg/spades-cloudspades-paper/assembler/src/common/modules/path_extend/read_cloud_path_extend/intermediate_scaffolding/scaffold_graph_polisher.cppChecking reachability for target: Starting processing from vertex Removing disconnected verticesCloudScaffoldSubgraphExtractorAdding forward vertex to subgraph: Adding backward vertex to subgraph: Getting inserted path connectionsConstructing initial cluster storageInitial cluster storage size: ATUIS8It$MD$HAo$HHL)@HHCHC HHHC(t!HH9weHIt$MD$HI9HCHC Hk(t3HL@HtoHHH9uIL)HHDHC H[]A\HHHH kg=== Stack Trace ===AWAVH5AUATH=USHXdH%(H$H1HHH@HHr{87sCH=HHHHÉIHōCL%L=Ml*DsCH=HHL9H]HtbHH=HHI$H@IH{8uHH H@0L9tHwI$HxLw LH$HdH3%(uKHX[]A\A]A^A_HHH H@0H9Hgap_len_[0].gap == 0ReachabilityCheckerProcessing vertex: Checking neighbour: Found targetInserting Not visited, processingVisitedCutVerticesExtractorSource: Sink: Current graph: -> cut vertices: General Checking vertex: PassedAdding edge: (TrueFalseExtracting scaffold subgraphFirst: Second: First length: Second length: First coverage: Second coverage: Checking sizesFirst size: Second size: Getting intersectionGot intersectionGot extractorConstructed predicatesRunning dijkstraTarget reached: vertices in subgraphAdding edge: vertices in cleaned subgraph edges in cleaned subgraphComplex subgraphBroken subgraphScaffoldGraphPolisherExtracting subgraphExtracting pathsFound pathsCleaning graphCleaned graphHHHFHHGtH=u @D@USHHHvHHHFHGHuH{HE(E0C0HC(HE8HC8H[]UIHHHATSIHL`Lht#)p)M)U)])e)m)u)}dH%(H81HFH HDž Dž$0H)HEH\$H(H@HHH0AIT$LHI$HcHH8dH3<%(Lu He[A\]HSHHHHHCXH9tHH{8H[HSHHHHHCXH9tHH{8HH߾h[/srv/scratch/marinovg/spades-cloudspades-paper/assembler/ext/include/boost/dynamic_bitset/dynamic_bitset.hppsize() > 0 && num_blocks() > 0m_check_invariants()HHWLHGHу?uqHwL)HL)HH9wHHHH9t%H H5H=yfDMtLHHHHI9t HpvH H5H=AWAVAUATIUSHHFHH|$HnH9H$qLs Lm M9M9H9$M|$M9rsH9$tHLp HI$M9rM9w&HLh 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H5H=oDHILLLHD$HHuHHUL`H|$HH8Ht$HH$L HtH8HHH1L$LI~H5HD$HI~HpL$IvHLL$LHx1HH$IL9tL%HD$@HuHHUL(H|$HHt$HH$L(HtH8IHH1L$LI~H5HD$@I~H0IEL$IvLHD$L$H|$LHt1H$IL9tLH$IHL9tLH$HtH|$xHtH|$@HtHHHH$HHtH{8HHHhH$HHsiHH{8HH_HUH|$8HHtH'Processed out of Extracting clusters from edge AWAVAUATUSHhdH%(H$X1HGL8HhL)HHHA1LcIcHHI9sH1LILI9HD$ XHC HkLd$`Ll$XHD$LHHD$HD$WHD$(HD$pHD$H$HD$0H$HD$8H$HD$@fHD$H|$(I4HD$`HT$hH8IHtHHuLH|$HL$Mt<IGHHM(L LCLLHHD$`IGPM?XZMuHC(HH|$HC(t1Ht$HH|$IHD$L9t$ tHCL8 H$XdH3%(Hh[]A\A]A^A_H|$0HD$0H5HHHHL$HHL$HHt$hHHD$0H|$8M?HpL$LHLTH$H;|$@tH|$0z@H8IHHH|$0HD$0H5 HHHHL$HHL$HHs(HH5HHD$HHCHL$HHpH+0HHHD$0H|$8M?HpL$LHL`H$H;|$@tH|$0Inserting head clusterInserting tail clustertail_cluster.Size() == 1head_cluster.Size() == 1head_mapping.GetEdge() == tail_mapping.GetEdge()head_mapping.GetReads() == tail_mapping.GetReads()AWAVIAUATUSHxdH%(H$h1H^Ht$hHT$LD$@LL$8HLH$L$H$HD$H$HD$fDH8IHtHn IG8HsH}HH$HLHH}xH}@H}IG8H|$@HHt$8LH$HPHxHa H$HDHHRHtH9J sHRHuH9tH;N sL$HHL$HLf(HHHD$HXHH$H$H$H$f.H8HHtH HL$hLHC1HD$ HqLHHH,IHLMIMALL'HHHH1IHHHI9I9uI<$u4IH L@1LILHI9} M9uHEHHD$f H{(tH{(0 Lt$I~(tI~( HD$HDŽ$HDŽ$HDŽ$Hh H 11L$@@H$HE8HF HH(H$HmHtsH$H$H9tFHtHEHHHE HFHE(HFHE0HHFtH=u@f.HULHmHuH$HLjHD$(HBMHD$XHBHD$HtH=lAEH$H$HJ H9HL$pL`(H L)HHHH!HTL4meM9LtUI(HhHtH=u֋EPUuHEHPE PU uHEHPM9LufDH$HtHk HDŽ$HDŽ$HDŽ$H11L$DBH$HU8HP HH(H$HmHtkH$H$H9t>HtHUHHHU HPHU(HPHU0HHPtH=uBfHULHmHuH$HHhHHL$0HHHHL$`HHHL$tH=EH$H@ HD$xH$H9HW(H Hl$HH\$PH)HHHHH!HDHH@Al$CH9Ht[H(LgMtH=uAL$qAt$uI $LQAL$ qAt$ uI $LQH9Hu@Hl$HH\$PH$HtHD$HH$H$H=EHD$ML$H$IEtL$LLH$HtD$HD$HH$HtD$HD$HuHD$HH$H$H=EHD$ML$H$IEtLLpH$HtD$D$H$HtD$D$Ht$0H9t$(uHt$`H9t$X7IG8Ht$ I|$HH$LLI$I|$xI|$@I|$IG8HD$1HtHD$D$MtLD$D$HL$@HHy8Ht$8HH$HPHxHH$H@HHRHtH9J sHRHuH9tH;N sL$LHL$HHn(HH= left_pos_UHAWAVAULnATLeSLuHIHxLHhLdH%(HE1LLHhI~ LHHEHAHEHhIV8LLzLHHA 1HEH|PH}PH{PH~PH}H HtH}HtH}HtH{81HhHHChHC@HCxHǃLs8CXHC8HHCpHHHBHH9r}HLLH)HHhH@ HIHǃHLLH}HtHEdH3%(uPHe[A\A]A^A_]fDHhHFHH9gH H5H=)LHH}HtHH}IHtLHLIAWAVAUATIUSHHH?H$H^HmIEL MI|$0I$Mt$HHI$tI|$HtHsLHCHs(I|$(ID$HC ID$ HC81HMID$8HC@ID$@LeID$@HuHEH HHI0IMwHHItIHtHsLHCHs(I(IGHC IG HC81IG8M<$HC@IG@HuHEHH8tRHMHt7IEL8MgHIHHsHxzfDH[]A\A]A^A_ÐL HHtGHt$Ht$H$H$HEDfDHIHHsHxsHE0HE0H$HHH<$tH}H0H9tHHAVAUATUSHH0dH%(HD$(1H9LoLw(HH~L#L9HH}HH{HEHT$HoE HH\$HCHCC HCHD$HD$HD$MtHC0I9tLH|$HL$(dH3 %(Hu@H0[]A\A]A^fJL1E1cfDHC0HC0EH|$HHMtH;HC0H9tLs(L#LkHCH;1HHHAWAVAUATIUSHHdH%(HD$81H?H$HD$H^HH$L{HL(MIUImMuHHIEI}HtLLHC HT$(HsoC8HIEIE(IE HC0AE8IEHHl$(IE0HCP1IL$IEPMl$IEPIt$I$H H+HHD$0HD$@HLsLHHCHHD$H{HtH{LHE HT$HuoE8LHCHC(HC HE0C8HCHLt$0HC0I]HEP1HCPIt$I$HH8t\HmIHt(H$L}HHH9LH@HD$8dH3%(uuHH[]A\A]A^A_fL(HHt6Ht$Ht$HD$HD$I$@LItID$0ID$0HD$HHLH|$tI<$I0L9tI}HHtHLH{HHtHHHHHhH[AVAUATUSHH0dH%(HD$(1H9LoLw(HH~L#L9HH}HH{HEHT$HoE HH\$HCHCC HCHD$HD$HD$MtHC0I9tLH|$HL$(dH3 %(Hu@H0[]A\A]A^fJL1E1cfDHC0HC0EH|$HHMtH;HC0H9tLs(L#LkHCH;1HHHConstructing head clusterclusters.size() > 0Barcode: clusterscluster.Size() == 1Left pos: Right pos: Edge: Edge positions: it != positions.end()Edge left pos: Edge right pos: Left pos on edge: Right pos on edge: Current left pos: Current right pos: current_left_pos >= right_posedge_right_pos >= current_mapping.GetRight()current_right_pos >= current_left_posAWAVAUATUSH8H$pH$H$H$LD$hLL$pHD$HdH%(H$(1H8HtH1HwHD$pH0H;p&H$HH$H$HDŽ$HDŽ$HDŽ$H11H$}HtMHSHHHS HPHS(HPHS0HHPtH= BH$HS8HP HH(H$HHt)H$H$H9uHSHHHuH$HL$0HsLH$ HCH$(HC HH$H$@H$LHH\$H$HHHD$PH$HD$`HT$@HtH8HHtH1H8HHtH1 HD$pL8H@L9HD$8 H$HD$ H$HD$0ItIwI_HDŽ$HDŽ$HDŽ$H1E1H$bfMt0HCI|$Hs(I$HC ID$HC8ID$ L$I(L$HHt/L$H$L9uHSHHHufDH$HHsH$HCH$HD$HxHC H$H$H$H9tHHo(H H)HHHH\(fH(HHtH9HuH$HtH8HHtH1nH8HHtH1HD$HpH$PHHHD$XH|$PHH$XH$H$HtH8HHtH1 H8HHtH1,H$H|$HHHD$HHH0HHH)HHHHH9"HKH3IH9gLHHtoHHH9uHH)HMd M9L$LIFHD$HI9H8HHtH1tѾLH|$H5H3H|$H5HHD$(HsH|$(H5HH|$ IvHmL$LH1HH$H;|$0tLHI9MH$HtIL9|$8HD$pL(H@L9HD$xPL$D$0HD$p1HD$(ID$HD$8fDI}tI}YImHDŽ$HDŽ$HDŽ$H81E1WMt,HEI~Hu(IHE IFHE8IF L$I(L$HmHt2L$H$L9uH|$HUHmHufDH$HEHuH$HEH$HD$HxHE H$H$H$H9tWLw(H L)HHHH!HDH,@I(HHtL9LuH$HtHD$L|$XHpLH|$PLH$XH$H$HtHt$H|$HHxL0HHL)HH~AHHHHLH9Xs&@HHHHLH9XnHHuL9 IFI.L$HD$ H$IHHD$H8IHtH1H8HHtH1H8HHtH1lH8HHtH1H8HHtH1(H8HHtH1H8HHtH1 H8HHtH1& HD$ H9$cL;t$0HD$@H9$I9HD$hHL$HL9H;$x@@  H$|$0LEt$(H$H$HL$pHD$`H$HLt$(HD$@tIL9l$xH\$@l$0H$H$HHD$(HH$PHD$H$XHD$XHxH$HD$pHH$ptL|$Ht$XH$LH$;H{ Ht$H$H\$H{8HH$hHtH$8HtH$H{8HH$(dH3 %(H$ H8[]A\A]A^A_ÃB@HHfH)LpHJDLH H5H="@H H5H=@HD$ H9$H H5H=fLL|$8H5LLLL}H$It$HL$LH1LH$HH9tLFfDLL|$8H5LHt$LL}H$It$HL$LH1LH$HH9tL@LL|$8H5 LHLL}H$It$HL$LH1LH$HH9tLbfDLH|$8H5H|$8HH$It$M?HL$LH1LH$HH9tLLL|$8H5LHt$ LL}H$It$HL$LH1LH$HH9tLr@LL|$8H5LH$LL}H$It$HL$LH1LH$HH9tLLL|$8H5LH$LL}H$It$HL$LH1LH$HH9tLfHl$`HH!H#$H9t HH#$H9 H9\$|$0Hl$ Ht$H|$HHHxL0IHL)HH~DHHHHLH;hv)ZHHHHLH;h?HHuL9M6H$LL$HD$XDH$HH{H5H$H{H|$ HsHmL$LH1HH$H;|$0tHDH$HH{H5H|$ HsHmL$LH1HH$H;|$0tHWH$HH{H5 H$H{H|$ HsHmL$LH1HH$H;|$0tHDH$HH{H5 H$H{H|$ HsHmL$LH1HH$H;|$0tHDLL|$8H5 LHt$(LL}H$It$HL$LH1LH$HH9tLF@L9uH H5H=*f.1If1E1H9H$Ht|$0ZH\$H$HH{H5 H$H{LeH$HsHL$LH1LH$HH9tHHHH)LpHJpHD$pH0H;pH H5H=fH$HH{H5LeH$HsHL$LH1LH$HH9tHH$HHD$pH{HpH+0HH5HLeH$HsHL$LH1LH$HH9tHWLIw8H{@IwpH{xIHH$`HH$hHH$pHH$xHM9w@1H$H$HIH9tHLH$8t1HIIoIxI@HAH$8HtL$I8LHI|H$HIH9tHLIL|$HI8LH$hH/%H$HHH9tLH$HuHHHD$ H$HH9tHH$HtHH H5H=HHdqH$XHHKAH|$H3H H5H=HT$ H$HHH9tLMtLHH$HHnHHHHHpHrHrH$XHHvHH H5H=HUpdating storageConstructing tail clusterhead_conj_cluster.Size() == 1right_pos >= left_pospath_length >= right_posExtracting tail clusterExtracting head clusterConj path: Extracting clusters from path AWAVAUATUSHHGdH %(H$1H|$pH(HXH)HH A1HcIcHHH9sH1HHHHHL$XHH9H$ HHL$pL$HD$xH$H$H$HQ HIH$H$H$H$H$PH $H$H$H$H$HD$ H$HD$(H$PHD$0H$HD$8H$HD$@H$HD$H$HD$hH$ H$HD$xH$HtHL$HLHD$H$HH$HPHHLHD$H8HHtH" H8HHtH H$Hl$ NLHHH$LLLt$ NHLLH$LLHK@H|$ HHHK@H|$(HLHD$0H$`HDŽ$XHDŽ$`HDŽ$hDŽ$p?H0HDŽ$xHDŽ$H$PHD$8HDŽ$HDŽ$HDŽ$DŽ$?H0HHDŽ$H$HDŽ$Hl$@ufDHHLcLkH8IHtHh Nt$(MHD$HT$LHL@(HXZ$tL$MoLeLLH|$0LIIxI@L$3HH}xH}@LHH H$H$HHHD$`H$HD$HuhHH[HkLcH8IHtHh Nt$0HHD$HT$(MH|$ L@(HY^$tH$H8IHtH\H$ tH$  L$HDŽ$HDŽ$HDŽ$M1E1L$cfMt0ID$I~It$(IID$ IFID$8IF L$I(L$M$$Mt6L$H$I9uIT$LLM$$MuL$I$H|$`It$H$ ID$H$(ID$ LH$@H$@H|$L$ L$(HD$PHG H9G@M9IM9Ht$H|$HHt$HLIL)M)H$L$H$HD$PHH$tL$H$LLH$HtH$8HtH$H$H$H$fo$H$It$0H$H$H$H9H$HDŽ$$zHtH@@1HH$IOH ID$0It$8I@HDŽ$HDŽ$H$HDŽ$HDŽ$HDŽ$It$pIxH$H$xH$H$o$H$I$H$H$H$H9HDŽ$)$HtH@1HH$IH I$H|$8LHDŽ$HDŽ$H$xH$HDŽ$HDŽ$HDŽ$H$H$H$H$H$H$H$IIxI@II$I|$pI|$8L$Lt$II~xI~@I~HHH8HHtH[H\$pHT$8L$Ht$0H<$LCH HC(1HD$HHC(H$H(H|$8H|$0H|$(H|$ H$H$H$HtH$HtHD$XHD$xHD$XH9$vHD$pH@H(QfH$dH3%(SHĨ[]A\A]A^A_HH}H5H|$HuM6L$LHLdH$H;|$htHfLt$@LI~H5H|$IvMmL$LHLnH$H;|$htH|$@E1M9ZH H5H=AH H5H=B@H8HHHLt$@InLH5 HLl$pHIu(H5HHIEHHpH+0HH|$IvHL$LHH߹}H$H;|$htH|$@fDLt$@LI~H5M,$L$IvLL$LH:LH$IL9tH|$@fE1L$IW8H$H$H$eIH$H$H$+@Lt$@LI~H5H|$IvHL$LHH߹yH$H;|$htH|$@'fLt$@LInH5HHD$HH H|$IvHL$LHH߹VH$H;|$htH|$@DfDLt$@LInH5 HHD$HH H|$IvHL$LHH߹WH$H;|$htH|$@H H5H=;LH$8HtH$HtH|$@H$IL9tAUATIUSIHH_Hu}DHSHtHHk LHuHSHutD1I;]Ht,HIHh HLH1҄HHEIEH[]A\A]fIH_AUHGATUSHIHH9tgLn HHL}HEH9Ht0HHx LItAI}HHEIDH[]A\A]fDH(tHG HHx ueHLH[]A\A]LLtYHU 1H9tHHp LItH{HIEIEpHU H1[]A\A]H1MAWAVIAUATIUSHHI6L` HLH{0H1H{HHC@H{X1HChHCpLHCxLHHIIt[HL}t-LLHHE(HH[]A\A]A^A_L9tHr Lf.H{@H{8HtH{(HtHHL[]A\A]A^A_HH{(HtHHHH{`HtH{PHtH{8HtH{(HtHHHHHH{PHHtH{8HRHHAVAULwATUISILH H_dH%(HD$1Hu>@HH[HtH{ LtH[HuI9tHu Lt$HL$LD$HHLLd$HHT$dH3%(HE0u H []A\A]A^AWAVIAUATUSH(HT$0HHL$8HHt$(H?HHdH %(H$1H9HD$H$IHD$HD$@HD$ @@HS HCHHD$XHT$`HB HC(HS8HD$hHC0HHT$xHD$pHBHSHHC@HH$H$HBtHCPCX$H$HC`H$HEH$HEH$HEHH$H=n@HU HEHH$H$HBHE(HU8H$HE0HH$H$HBHUHHE@HH$H$HBtHEPEX$H$HE`H$HD$@H9$D$H$HtH$HtH$HtH$HtH$HtH|$xHtH|$`HtH|$PHtD$KDmHDMDIDLkI,HH}HEHCI9HEt+MtH=AEH}HtLmLk H} HCI9HEt+MtH=}AEH} HtLm HC(Lk8H}8HE(HC0I9HE0t+MtH=EAEH}8HtLm8LkHH}HHC@I9HE@t+MtH=AEH}HHtLmHHCPL;d$MCXHEPHC`EXHE`MIEL4MfIKdIII,IHHD$@HCHD$HHCHHD$PH=0@HCHD$XHC HHD$`t@HC(HD$hHC0HD$pHC8HHD$xE@HC@H$HCHHH$A@8@HEH$HE HH$t@HE(H$HE0H$HE8HH$tb@HE@H$HEHHH$@@HE(H$HE0H$HE8HH$HE@H$HEHHH$IH=tH2@HC(HD$hHC0HD$pHC8HHD$x@HC@H$HCHHH$H=HHEH$HE HH$H=H4HCHD$XHC HHD$`%H=HfDAE+fDAESfDAEfDAEfDHD$HL$ HpHyHD$<HL$ HpHyHD$Hp(HD$ Hx(fDH$Ld$(HD$fDHD$0uHHHH?HHL9H\$8Lt$HHsI~H$HsI~HC(Hs0I~0H$Hs@I~@HCPHT$(LCXLLH$HC`$H$LH$dH3%(H([]A\A]A^A_HL$ HpHyD$DHE(H$HE0H$HE8HH$H=H%@HC(HD$hHC0HD$pHC8HHD$xH=HDHL$ HpHySfK\$H[HI4KdIII<LH|$HH|$ HH|$HHAUATUSHHH,HttH]ILCx%DHHtpL@x1HHLHwH9uXL9uHCI9D$uI$HCIL!L!H9tI$L!L#kL9u&HH[]A\A]H1[H]A\A]H H5H=HHN1HHwIHLHtHHt HHH=HHHH@@HSHHHHp H@(HtBHHf.HH@HtH9P sH@HuH9tH;Q [1[/srv/scratch/marinovg/spades-cloudspades-paper/assembler/src/common/barcode_index/barcode_info_extractor.hppHasBarcode(edge, barcode)AUATL-USIHHHHH@(L96HGHxHp H@(H(HUHHH@HtH9P sH@HuH9H;Q HH@(L9HCLHxHp H@(HHUH HH@HtH9P sH@HuH9H;Q H{LHHP(Hp HHMHHHRHtH9J sHRHuH9tH;H HBHH([]A\A]fЄfDHH@(L9HLHЄVH H5H=8fHH[H(]A\A]pos < m_num_bitsAWAVIAUATIUSHHHHHHGHGH~LHL$ LD$dH%(H$1H{LLLp0H{LLL`(HLHD$HCHxHH@PH{LLH$HXH+XIE1HD$PHD$XHD$`HHHtHH9HILLD$XLD$PH\$`IGIwHH)H9tLHIIG LM9H\$XHD$hI9SHD$@LM1HD$(HD$pHD$0H$HD$8H$HD$.@IuIܾHI9H;\$hLD$PHHٸ?HHIu@tH<$H;|$vIuIUH|$(H $H|$8Ht$(HIHD$pHIHD$xH|$HHD$HH$tHT$ Ht$0H|$H}H;}-HtHt$H}HH}HD$Hx8H|$H$HtH11I9@@unHT$hH|$PHD$XHу?pHt$`H)HH)HH9wHHHH9H H5H=yMH$IuIUHH$HLLLd$pLd$pL|$xI|$H$HD$HH$tHT$ LHH}H;}Ht HH}HH}HH{pH{8HH$HHtH$dH34%(HHĸ[]A\A]A^A_f.HHH9HpsfDHHHADHT$HHH H5H=HHHHH|$PLt$HI~8LH$HtH{8IHLH H5H=HHHN1HHwIHLHtHHt H1HAUATUSHHH(dH%(HD$1HH#HHP@H@8H$HGHT$HxH}IHI8HI|$L9t~Hh@HX8E1fDHt=HO HHHHRHtH9J sHRHuH9t H;N rIL9HuH\$dH3%(LuH([]A\A]E1ScaffoldVertexSimpleEntryExtractor/srv/scratch/marinovg/spades-cloudspades-paper/assembler/src/common/barcode_index/scaffold_vertex_index_builder.hppExtracting entry from pathTail threshold: Current tail: Current entry size: Result size: AWAVIAUATIUSHxH|$PdH%(H$h1H8HtH1HI<$IH@XH|$PI+G8I^HDŽ$HDŽ$HDŽ$HHHHIG@I+GHHHIW0I+W GHGHG(DŽ$?HDŽ$HDŽ$HHHD$@HGHGHG H$I<$HD$XH$H$HH(Ll$pHLLl$LHH|$xHD$8HtH8HHtH1H|$@H$HD$ )HD$ H$H$H9D$@wH|$8H9|$ gIO H$HI+G(HHHxHHZIO8HHH)HHHH@INHD$xHHT$pH!HB H+AI9F0`HD$8H+D$ HD$H8HHtH1IF(MfH\$HD$(ID$HHxH@PHHD$ID$HxHXHHD$H1HD$0/@HD$Lk(HCPH9D$r L9l$(HHID$Ht$HxH8H9uHD$0H9II]H$1HHH$LIMI0HN*HHHH1IHHHI9H9uIHpIUHIHL9xH8HHtH1)HH#T$pH|$ IFHz HH+PHD$0HHT$ HH$H$H9D$@H$Hu ?HHt6H{vLt$PHkHLHtHHLHHuH8HHtH1H|$XH$hdH3%(HD$PHx[]A\A]A^A_@H9l$HHC HD$`HtHELmHfDIUH|$XHHH@LHPHWHHHHHHH$HH{H5Ht$H{LeH$HsHL$LHv1LH$HH9tHnH$HH{H5H$H{LeH$HsHL$LH{1LH$HH9tHHthHH{HvHH{It$ID$(H{0It$0HC(H{@It$@ID$PAD$XCXHCPID$`HC`H]HshHuHFH}H$HFHD$HFHHD$H=@HFHD$HFHHD$ t@HFHD$(HFHD$0HFHHD$8@HFHD$@HFHHD$Ht@HFFD$XHD$PHFHD$`H$HD$pHD$HD$xHD$HH$,H=@HT$ HD$HH$H$HB2HD$(HT$8H$HD$0HH$H$HB*HT$HHD$@HH$H$HBtHD$PH)H\$pHD$XH1H$HD$`$H$HNNNHHHHH$dH3%(H[]A\@HVHFHHD$HT$ HBHFHVHD$(HFHHT$8HD$0HBHVHFHHD$@HT$HHB#@@HD$H$HD$ HH$t@HD$(H$HD$0H$HD$8HH$@HD$@H$HD$HHH${@rHD$H$HD$ HH$MH=jHfDHD$(H$HD$0H$HD$8HH$>HD$@H$HD$HHH$H=UHfDHFHD$HFHHD$ tqH=rH>fHFHD$(HFHD$0HFHHD$8ufHFHD$@HFHHD$HsH=aH9fDHFHD$(HFHD$0HFHHD$8tH= HHD$(H$HD$0H$HD$8HH$H=!HfHHHu#HHHHDijkstra startedAdding new entry to queueEntry: vertex distance finishedAll neighbours of vertex processedChecking new neighbour of vertex /srv/scratch/marinovg/spades-cloudspades-paper/assembler/src/common/assembly_graph/dijkstra/dijkstra_algorithm.hppCheckPutVertex returned true and new entry is addedAWAVAUATIUSHH$HT$@HL$HdH%(H$1HHt$(H\$ H$HH$@HHH$HH$HHHMl$xHH$HL$H$H$HD$H$HtHHHH$H$HLH$HtH$HH$HH$tH$HtH$HtH$H9$H$L$ HD$H$HD$HD$PHD$8XH8IHtH1H}H$HHtH$H9$9H8IHtH1CHt$HHHM$I$HH$IHtM95H8IHtH1OLt$ HuLL<$LLLHHLHD$@LHHD$0H8IHtH1PL|$ HuLH|$8HL4$LL|$`LHt$8LLLt$pHLLHL$0I|$8HLH|$xAHtHH|$hHtH<$H|$XHtH|$ EH8IHtH1GH<$HuL|$ Ht$(LHLHD$0H{LH$H{LH4$H{(H|$HHHH|$xHtH$HtH<$LI}H5!HT$(I4$H|$H$H$I}H5HH$H;|$tH|$IuM6L$LH|1LH$H;|$tLfLI}H5!HT$(I4$H|$H$H$I}H5HH$H;|$tH|$IuM6L$LHp1LH$H;|$tLH8HHtH1H$H$HH$H9t3fDH{ HtH{HtH@H9uH$HtHH$HH$HtH$dH3%(Hĸ[]A\A]A^A_@L$ LI}H5H$HT$(I4$HH$H$I}H5HH$HEH9tIuHHL$LH~1HH$HH9tLvLI}H5H|$IuM6L$LHs1LH$H;|$tL=@LI}H5I4$H|$HH$H$I}H5 HIHt$0LH$H;|$tH|$IuM6L$LHu1LH$H;|$tLDLI}H5H|$IuM?L$LHw1LH$H;|$tLEHHD$H$HH9tLHH|$HHH$HHtHH|$xIHtHH|$hHtH<$H|$XHtH|$ 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f.HHQHuHUXHL$`HD$PHT$hHD$HDŽ$D$xHDŽ$HPH$H$Hs@HqH|$HL$8H|$8IH HHBHuH$L HHBHuLsXH$L$L$HEHLuXH8H9taLc@E1H8@Mt=HH HLHHRHtH9J sHRHuH9t H;N rIHH9uM)H|$LHt$PH|$MxWfI*L$^f(bHT$(Ht$ LIBHfHH H*XD$eLfHAL H*XLsXE1LHT$(Ht$ IeHT$(Ht$ LHxfH*\$HfHH H*XD$H|$Ht$PHHH=HH=HH5Hbarcode_index::BarcodeIndexInfoExtractor::const_intersection_iterator::reference barcode_index::BarcodeIndexInfoExtractor::const_intersection_iterator::operator*() [with barcode_entry_t = barcode_index::FrameEdgeEntry; barcode_index::BarcodeIndexInfoExtractor::const_intersection_iterator::reference = barcode_index::BarcodeIndexInfoExtractor::IntersectionData]void cluster_storage::EdgeInitialClusterStorageBuilder::AddClustersFromBarcodeOnEdge(const EdgeId&, const BarcodeId&, size_t, cluster_storage::InternalEdgeClusterStorage&, cluster_storage::ClusterStorage&, std::vector&) constcluster_storage::PathInitialClusterStorageBuilder::EdgePosIndex::EdgePosEntry cluster_storage::PathInitialClusterStorageBuilder::EdgePosIndex::GetPosEntry(const EdgeId&, size_t, size_t) constdebruijn_graph::EdgeId path_extend::scaffold_graph::EdgeGetter::GetEdgeFromScaffoldVertex(const path_extend::scaffold_graph::ScaffoldVertex&)boost::optional cluster_storage::PathInitialClusterStorageBuilder::ConstructHeadClusterForBarcode(path_extend::BidirectionalPath*, barcode_index::BarcodeId, size_t, const std::vector&, const cluster_storage::PathInitialClusterStorageBuilder::EdgePosIndex&, size_t) constcluster_storage::Cluster cluster_storage::PathInitialClusterStorageBuilder::ConstructTailClusterForBarcode(path_extend::BidirectionalPath*, barcode_index::BarcodeId, const cluster_storage::Cluster&) constvoid cluster_storage::PathInitialClusterStorageBuilder::UpdateClusterStorage(std::unordered_map&, std::unordered_map&, cluster_storage::ClusterStorage&, cluster_storage::InternalEdgeClusterStorage&, const ScaffoldVertex&) constcluster_storage::PathInitialClusterStorageBuilder::EdgePosIndex cluster_storage::PathInitialClusterStorageBuilder::ConstructEdgePosIndex(path_extend::BidirectionalPath*, size_t) constcluster_storage::Cluster::MappingInfo cluster_storage::Cluster::GetMapping(const ScaffoldVertex&) constconst Block& boost::dynamic_bitset::m_highest_block() const [with Block = long unsigned int; Allocator = std::allocator]boost::dynamic_bitset::~dynamic_bitset() [with Block = long unsigned int; Allocator = std::allocator]bool boost::dynamic_bitset::test(boost::dynamic_bitset::size_type) const [with Block = long unsigned int; Allocator = std::allocator; boost::dynamic_bitset::size_type = long unsigned int]const barcode_info_t& barcode_index::BarcodeIndexInfoExtractor::GetInfo(const EdgeId&, const BarcodeId&) const [with barcode_entry_t = barcode_index::FrameEdgeEntry; barcode_index::BarcodeIndexInfoExtractor::barcode_info_t = barcode_index::FrameBarcodeInfo; barcode_index::EdgeId = restricted::pure_pointer >; barcode_index::BarcodeId = long unsigned int]void btree::btree_iterator::increment_slow() [with Node = const btree::btree_node >, std::less > >, std::allocator > >, 256> >; Reference = const restricted::pure_pointer >&; Pointer = const restricted::pure_pointer >*]btree::safe_btree_iterator::reference btree::safe_btree_iterator::operator*() const [with Tree = const btree::safe_btree >, std::less > >, std::allocator > >, 256> >; Iterator = btree::btree_iterator >, std::less > >, std::allocator > >, 256> >, const restricted::pure_pointer >&, const restricted::pure_pointer >*>; btree::safe_btree_iterator::reference = const restricted::pure_pointer >&]static const Config& config_common::config::get() [with Config = debruijn_graph::config::debruijn_config]size_t cluster_storage::Cluster::MappingInfo::GetSpan() conststd::unordered_map > cluster_storage::PathInitialClusterStorageBuilder::ExtractBarcodeToClusters(path_extend::BidirectionalPath*, size_t) constpath_extend::BidirectionalPath* path_extend::scaffold_graph::PathGetter::GetPathFromScaffoldVertex(const path_extend::scaffold_graph::ScaffoldVertex&)size_t path_extend::BidirectionalPath::Length() constbool restricted::pure_pointer::operator==(const restricted::pure_pointer&) const [with T = omnigraph::PairedEdge]void path_extend::SimpleGraph::AddEdge(const Vertex&, const Vertex&) [with Vertex = path_extend::scaffold_graph::ScaffoldVertex]St11_Mutex_baseILN9__gnu_cxx12_Lock_policyE2EESt16_Sp_counted_baseILN9__gnu_cxx12_Lock_policyE2EEN13barcode_index20AbstractBarcodeIndexEN13barcode_index33AbstractBarcodeIndexInfoExtractorEN13barcode_index25BarcodeIndexInfoExtractorINS_14FrameEdgeEntryEEEN13barcode_index30FrameBarcodeIndexInfoExtractorEN13barcode_index12BarcodeIndexINS_14FrameEdgeEntryEEEN13barcode_index32ScaffoldVertexIndexInfoExtractorEN13barcode_index44IntersectingScaffoldVertexIndexInfoExtractorISt3setImSt4lessImESaImEEEEN13barcode_index38SimpleScaffoldVertexIndexInfoExtractorEN11path_extend25ScaffoldSubgraphExtractorEN11path_extend30CloudScaffoldSubgraphExtractorEN11path_extend19ReachabilityCheckerEN11path_extend26ForwardReachabilityCheckerEN11path_extend27BackwardReachabilityCheckerEN9omnigraph17NeighbourIteratorIN11path_extend14scaffold_graph13ScaffoldGraphEEEN9omnigraph24ForwardNeighbourIteratorIN11path_extend14scaffold_graph13ScaffoldGraphEEEN9omnigraph25BackwardNeighbourIteratorIN11path_extend14scaffold_graph13ScaffoldGraphEEEN9omnigraph20VertexProcessCheckerIN11path_extend14scaffold_graph13ScaffoldGraphEmEEN9omnigraph19BoundProcessCheckerIN11path_extend14scaffold_graph13ScaffoldGraphEmEEN9omnigraph35BoundedVertexTargetedProcessCheckerIN11path_extend14scaffold_graph13ScaffoldGraphEmEEN9omnigraph16VertexPutCheckerIN11path_extend14scaffold_graph13ScaffoldGraphEmEEN9omnigraph30ScaffoldBarcodedPathPutCheckerIN11path_extend14scaffold_graph13ScaffoldGraphEmEEN13barcode_index19TailThresholdGetterEN13barcode_index24ConstTailThresholdGetterEN13barcode_index36AbstractScaffoldVertexEntryExtractorISt3setImSt4lessImESaImEEEEN13barcode_index34ScaffoldVertexSimpleEntryExtractorEN15cluster_storage20EdgeClusterExtractorEN15cluster_storage28AccurateEdgeClusterExtractorEN15cluster_storage28InitialClusterStorageBuilderEN15cluster_storage32EdgeInitialClusterStorageBuilderEN15cluster_storage32PathInitialClusterStorageBuilderESt19_Sp_make_shared_tagSt23_Sp_counted_ptr_inplaceIN11path_extend35IntersectionBasedPairEntryProcessorESaIS1_ELN9__gnu_cxx12_Lock_policyE2EESt23_Sp_counted_ptr_inplaceIN11path_extend30LongEdgePairGapCloserPredicateESaIS1_ELN9__gnu_cxx12_Lock_policyE2EESt23_Sp_counted_ptr_inplaceIN13barcode_index30FrameBarcodeIndexInfoExtractorESaIS1_ELN9__gnu_cxx12_Lock_policyE2EESt23_Sp_counted_ptr_inplaceIN11path_extend23CloudBasedPathExtractorESaIS1_ELN9__gnu_cxx12_Lock_policyE2EESt23_Sp_counted_ptr_inplaceIN15cluster_storage28AccurateEdgeClusterExtractorESaIS1_ELN9__gnu_cxx12_Lock_policyE2EESt23_Sp_counted_ptr_inplaceIN15cluster_storage32EdgeInitialClusterStorageBuilderESaIS1_ELN9__gnu_cxx12_Lock_policyE2EESt23_Sp_counted_ptr_inplaceIN15cluster_storage21InitialClusterStorageESaIS1_ELN9__gnu_cxx12_Lock_policyE2EESt23_Sp_counted_ptr_inplaceIN15cluster_storage32PathInitialClusterStorageBuilderESaIS1_ELN9__gnu_cxx12_Lock_policyE2EESt23_Sp_counted_ptr_inplaceIN13barcode_index24ConstTailThresholdGetterESaIS1_ELN9__gnu_cxx12_Lock_policyE2EESt23_Sp_counted_ptr_inplaceIN13barcode_index38SimpleScaffoldVertexIndexInfoExtractorESaIS1_ELN9__gnu_cxx12_Lock_policyE2EESt23_Sp_counted_ptr_inplaceIN13barcode_index34ScaffoldVertexSimpleEntryExtractorESaIS1_ELN9__gnu_cxx12_Lock_policyE2EESt23_Sp_counted_ptr_inplaceIN13barcode_index19ScaffoldVertexIndexISt3setImSt4lessImESaImEEEESaIS7_ELN9__gnu_cxx12_Lock_policyE2EE?_CGCC: 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lect1stIS2_ESt4lessImESaIS2_EE8_M_eraseEPSt13_Rb_tree_nodeIS2_E_ZNSt6vectorImSaImEE17_M_realloc_insertIJRKmEEEvN9__gnu_cxx17__normal_iteratorIPmS1_EEDpOT_memmove_ZNSt16_Sp_counted_baseILN9__gnu_cxx12_Lock_policyE2EE10_M_releaseEv_ZNSt4pairIKN11path_extend14scaffold_graph14ScaffoldVertexEN15cluster_storage7Cluster11MappingInfoEED2Ev_ZNSt4pairIKN11path_extend14scaffold_graph14ScaffoldVertexEN15cluster_storage7Cluster11MappingInfoEED1Ev_ZN9omnigraph35BoundedVertexTargetedProcessCheckerIN11path_extend14scaffold_graph13ScaffoldGraphEmED2Ev_ZTVN9omnigraph35BoundedVertexTargetedProcessCheckerIN11path_extend14scaffold_graph13ScaffoldGraphEmEE_ZN9omnigraph35BoundedVertexTargetedProcessCheckerIN11path_extend14scaffold_graph13ScaffoldGraphEmED1Ev_ZN9omnigraph35BoundedVertexTargetedProcessCheckerIN11path_extend14scaffold_graph13ScaffoldGraphEmED0Ev_ZN11path_extend14scaffold_graph13ScaffoldGraph12ScaffoldEdgeD2Ev_ZN11path_extend14scaffold_graph13ScaffoldGraph12ScaffoldEdgeD1Ev_ZNK11path_extend30CloudScaffoldSubgraphExtractor19CheckSubGraphVertexERKNS_14scaffold_graph14ScaffoldVertexES4_S4__ZNK11path_extend14scaffold_graph14ScaffoldVertex21GetConjugateFromGraphERKN14debruijn_graph13DeBruijnGraphE_ZNK11path_extend14scaffold_graph14ScaffoldVertexneERKS1__ZN13barcode_index25BarcodeIndexInfoExtractorINS_14FrameEdgeEntryEED2Ev_ZTVN13barcode_index25BarcodeIndexInfoExtractorINS_14FrameEdgeEntryEEE_ZN13barcode_index25BarcodeIndexInfoExtractorINS_14FrameEdgeEntryEED1Ev_ZN13barcode_index25BarcodeIndexInfoExtractorINS_14FrameEdgeEntryEED0Ev_ZN13barcode_index30FrameBarcodeIndexInfoExtractorD2Ev_ZN13barcode_index30FrameBarcodeIndexInfoExtractorD1Ev_ZN13barcode_index30FrameBarcodeIndexInfoExtractorD0Ev_ZN9omnigraph30ScaffoldBarcodedPathPutCheckerIN11path_extend14scaffold_graph13ScaffoldGraphEmED2Ev_ZN9omnigraph30ScaffoldBarcodedPathPutCheckerIN11path_extend14scaffold_graph13ScaffoldGraphEmED1Ev_ZN9omnigraph35BoundedVertexTargetedProcessCheckerIN11path_extend14scaffold_graph13ScaffoldGraphEmE5CheckENS2_14ScaffoldVertexEm_ZNSt14__shared_countILN9__gnu_cxx12_Lock_policyE2EEaSERKS2__ZN9omnigraph25BackwardNeighbourIteratorIN11path_extend14scaffold_graph13ScaffoldGraphEE4NextEv_ZN11path_extend14scaffold_graph10EdgeGetter25GetEdgeFromScaffoldVertexERKNS0_14ScaffoldVertexE_ZNK11path_extend14scaffold_graph14ScaffoldVertex7GetTypeEv_ZNK11path_extend14scaffold_graph14ScaffoldVertex14GetInnerVertexEv_ZNK11path_extend14scaffold_graph12EdgeIdVertex3getEv_ZN11path_extend14scaffold_graph10PathGetter25GetPathFromScaffoldVertexERKNS0_14ScaffoldVertexE_ZNK11path_extend14scaffold_graph10PathVertex3getEv_ZN9omnigraph30ScaffoldBarcodedPathPutCheckerIN11path_extend14scaffold_graph13ScaffoldGraphEmEC2ERKS3_RKNS2_14ScaffoldVertexES9_St10shared_ptrINS1_23ScaffoldVertexPredicateEE_ZN9omnigraph30ScaffoldBarcodedPathPutCheckerIN11path_extend14scaffold_graph13ScaffoldGraphEmEC1ERKS3_RKNS2_14ScaffoldVertexES9_St10shared_ptrINS1_23ScaffoldVertexPredicateEE_ZN9omnigraph24ForwardNeighbourIteratorIN11path_extend14scaffold_graph13ScaffoldGraphEE4NextEv_ZNSt5dequeIN11path_extend14scaffold_graph14ScaffoldVertexESaIS2_EED2Ev_ZNSt5dequeIN11path_extend14scaffold_graph14ScaffoldVertexESaIS2_EED1Ev_ZN9omnigraph24ForwardNeighbourIteratorIN11path_extend14scaffold_graph13ScaffoldGraphEED2Ev_ZTVN9omnigraph24ForwardNeighbourIteratorIN11path_extend14scaffold_graph13ScaffoldGraphEEE_ZTVN9omnigraph17NeighbourIteratorIN11path_extend14scaffold_graph13ScaffoldGraphEEE_ZN9omnigraph24ForwardNeighbourIteratorIN11path_extend14scaffold_graph13ScaffoldGraphEED1Ev_ZN9omnigraph25BackwardNeighbourIteratorIN11path_extend14scaffold_graph13ScaffoldGraphEED2Ev_ZTVN9omnigraph25BackwardNeighbourIteratorIN11path_extend14scaffold_graph13ScaffoldGraphEEE_ZN9omnigraph25BackwardNeighbourIteratorIN11path_extend14scaffold_graph13ScaffoldGraphEED1Ev_ZNSt23_Sp_counted_ptr_inplaceIN13barcode_index34ScaffoldVertexSimpleEntryExtractorESaIS1_ELN9__gnu_cxx12_Lock_policyE2EE10_M_disposeEv_ZTVN13barcode_index34ScaffoldVertexSimpleEntryExtractorE_ZNSt23_Sp_counted_ptr_inplaceIN13barcode_index38SimpleScaffoldVertexIndexInfoExtractorESaIS1_ELN9__gnu_cxx12_Lock_policyE2EE10_M_disposeEv_ZTVN13barcode_index38SimpleScaffoldVertexIndexInfoExtractorE_ZNSt23_Sp_counted_ptr_inplaceIN15cluster_storage32PathInitialClusterStorageBuilderESaIS1_ELN9__gnu_cxx12_Lock_policyE2EE10_M_disposeEv_ZTVN15cluster_storage28InitialClusterStorageBuilderE_ZNSt23_Sp_counted_ptr_inplaceIN15cluster_storage32EdgeInitialClusterStorageBuilderESaIS1_ELN9__gnu_cxx12_Lock_policyE2EE10_M_disposeEv_ZNSt23_Sp_counted_ptr_inplaceIN15cluster_storage28AccurateEdgeClusterExtractorESaIS1_ELN9__gnu_cxx12_Lock_policyE2EE10_M_disposeEv_ZTVN15cluster_storage20EdgeClusterExtractorE_ZN9omnigraph24ForwardNeighbourIteratorIN11path_extend14scaffold_graph13ScaffoldGraphEED0Ev_ZN9omnigraph25BackwardNeighbourIteratorIN11path_extend14scaffold_graph13ScaffoldGraphEED0Ev_ZN9omnigraph30ScaffoldBarcodedPathPutCheckerIN11path_extend14scaffold_graph13ScaffoldGraphEmED0Ev_ZN9omnigrap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all pathsSingle pathToo many pathsConstructing cluster storageProcessing clusters out of PathClusterConflictResolverFirst size: Second size: Getting scoresGot scoresChecking entries path clustersChecking conflictsFound conflictGot clash score pairsReturningCloudBasedPathExtractorGetting path clustersGet normalized storageResolving conflictsExtracted paths/srv/scratch/marinovg/spades-cloudspades-paper/assembler/src/common/modules/path_extend/read_cloud_path_extend/intermediate_scaffolding/path_cluster_helper.cppExtracting paths using final clustersHATUHSHHILU0IHMHEHtYE1LMHHHHHHt1LH$H;|$8tL@LI}H5I}LH|$0IuM?L$LH@1LH$H;|$8tLHIIH$IfDIU@IUH$IU@L$LI|$H5L+H$It$HL$LH*LH$HH9tLL$LI|$H5L+H$It$HL$LH9LH$HH9tL.HLH|$(H$HHLH{8HHH|$H$HHT$0H$HHH9tHLHHD$0H$HH9tuHHD$0H$HH9uZRHHD$8H$HH9tLL|$I8LHHHD$8H$HH9HHH{@HH{HHZSHLHH$HHH9t]HjH$HHH9tHLUHH$HHH9tHCluster storage size: Edge cluster storage size: Size: Edge storage size: AWAVIAUATIUSHfHLl$@L$HL$dH%(H$1IE0 D$XHD$@ID$0HD$H$)$D$hL$`$H$ID$h$)$H$HB@$HD$PHD$xHDŽ$HDŽ$HDŽ$HDŽ$H$H8HD$HtHH8HD$HtHHD$HHt(fDH$HMMMLLHmHuHD$HHT$(HfoD$`LHCHC0HHCHD$XC H\$(HCHD$xHk@HT$0fo$LHC@HCPHHC8H$C`HCpHl$0HCHH$HCXH$H{xHT$8o$It$8HCxHǃHH$HǃH|$8HH8IHtHJH8IHtHuMI|$8LLH$dH3 %(H.HĨ[]A\A]A^A_H$HH}H5HCP1HtHp@HHuHHtHp@HHuH}L$HuM6LL|$L$LHLH$LHH9tHH$HH}H5HsH}L$HuM6LL|$L$LHLH$LHH9tHH$HH}H5IvH}HD$HuHHD$H$HHD$L$H|$LHHD$H$HH9tHfH$HH}H5IFP1HtHp@HHuIHt Hp@HHuH}HD$HuHHD$H$HHD$L$H|$LHHD$H$HH9tH HHD$H$HH9tHI|$8LLHHIHLIHHLIHD$H$HH9tHHIIKHT$H$IHH9uHATUHSHHILU0IHMHEHtYE1LMHHHHHHtClusterMergerIntersection: Merging barcode: Getting clusters from edgesmap::atGetting clusters from storageFirst id: Second id: Head cluster size: Head cluster id: it != mappings_.end()Tail cluster size: Tail cluster id: Distance to end: Distance to start: Between edges: Distance: edge_ == other.edge_New cluster size: New cluster id: First edge: Second edge: Finished inserting/srv/scratch/marinovg/spades-cloudspades-paper/assembler/src/common/barcode_index/cluster_storage/barcode_cluster.hppsecond.GetLengthFromGraph(g_) >= second_cluster_mapping.GetRight()AWAVLAUATH8USHH|$0HHt$hHT$`HL$ L$LL$@dH %(H$1H$H$PHDŽ$`DŽ$XHDŽ$xHWH|$HH$hH$pHpHtoH$`HH$`H f.HHQHuH$hH HHQHuHS(H$pH$`H$xHt$`H$HH$HDŽ$DŽ$HDŽ$HPHD$PH$H$HuHH$`HH$`HDHHSHuH$H HHQHuHU(H$H$H$HD$HH$hL$`L$HDŽ$HDŽ$HDŽ$L`HD$PLhL9t#L9tHE H;C HHL9uH8HHtH1H$H$H9HL$X4HD$H$`L$HD$(H$pHD$8H$HD$pf.H8HHtH1H8HHtH1$H$`HHL$HHL$HH HH@HtH9P sH@HuHD$HHH9SH;Q IH$Hi(HTHL$PHfHH@HtH;P vH@HuHD$PHH9H;Q  Li(H8HHtH1_H8HHtH1Ht$pH|$ H$L$`HLH8HHtH1H|$ H$L$H$`HHHL$H$xH$xH8HHtH1 H8HHtH1 H\$hH1HLH$hHHHHHHCHs(H$H$HC H$HC8H$H8HHtH1u H8HHtH1 Ld$`L1HH|$H$hHLH HHHCHs(H$0H$ HC H$(HC8LH$@HD$0H0H;$(sHD$0H|$`H0H9$(>HD$0H|$hH0H+$HH$ HD$HHD$xH8IHtH1d H8HHtH1 H8HHtH1h H8HHtH1ZHL$@H9L$xI9H$pHH$H8H1HLH$hHHHrL(MfIE(LHHD$:H|$LIEH9CHFCIEHC I9E ICE IE HC8IE8H$HtHHLc(HLH1HLH$hHHH LkL1HH$H$hLHT$Ht$LHt H8bHHxHLH$H$HSLHPHS Hx(HP HS8H$LHt$HP8H$HHT$`Ht$hI8DH$8HtH$HtH\$H{8HI8LHD$HD$H9D$XH$HD$XHD$XHtHH$H|$PH$`H|$HH$dH3%(H[]A\A]A^A_2 HHfLI~H5H|$(IvHL$`LHs1HH$`H;|$8tLH$`HmH=@LI~H5HD$I~H0H|$(IvHL$`LHr1HH$`H;|$8tLfDLI~H5H|$(IvHL$`LHv1HH$`H;|$8tL-@LI~H5 I~HH|$(IvHL$`LHw1HH$`H;|$8tLLI~H5 I~LH|$(IvHL$`LHy1HH$`H;|$8tLH H5H=@ffDH$@H$@L$HD$xLH$@H$HH$HHD$Hp8H$0HIo8DHsHHHuH$0HHD$L$fDHD$I|$8HhHHX-@@I8LHH$HtHI|$8HHt-HCH$HCHH$tH=u@HD$HHHD$bLHT$`Ht$hI8H\$ H$XHH$XHLHHH8HHtH1H8HHtH1H8HHtH1!H8HHtH1H$pHH$L$HD$fDHs(LHD$@H;CvvH$LHPHxHHL$HH HHRHtH9J sHRHuH9tH;N sHL$LHH$HHn(HD$0LH0HT$@HS H9H$HtHH3H8HHH1LI~H5H|$(IvHL$`LH1HH$`H;|$8tLuDH$LHPHxH.HL$HH f.HHRHtH9J sHRHuH9tH;N sHL$HT$HH$HHn(@LI~H5H$xI~H|$(IvHL$`LH~1HH$`H;|$8tLfDLI~H5H$XI~H|$(IvHL$`LH1HH$`H;|$8tLfDLI~H5H$PI~H|$(IvHL$`LH1HH$`H;|$8tLfDLI~H5H$xI~H|$(IvHL$`LH1HH$`H;|$8tLfDLI~H5H$XI~H|$(IvHL$`LH1HH$`H;|$8tLfDLI~H5I~HH|$(IvI$L$`LH1HH$`H;|$8tLf.LI~H5Ht$I~H|$(IvHL$`LH1HH$`H;|$8tLfH$H;$H$`HtHHH$HHfDLI~H5 Ht$xI~H|$(IvHL$`LH1HH$`H;|$8tLHHHLI~H5 H|$hI~HH|$(IvHL$`LH1HH$`H;|$8tLPLI~H5H$XI~H|$(IvHL$`LH1HH$`H;|$8tLLI~H5H$xI~H|$(IvHL$`LH1HH$`H;|$8tLLI~H5 H|$`I~HH|$(IvHL$`LH1HH$`H;|$8tLH$HH{H5H$H+$H{HLeH$`HsHL$`LHp1LH$`HH9tHTLLbH=H$HHtH$8HtH$HtLt$I~8LI8LH$HtH$H|$PH|$HH$`HfDH=HHHD$(H$`HH9tL5HHHD$(H$`HH9tLHH$HHtLHHHD$(H$`HH9tLIHLH H5H=HhHrH$`HIH9tH H5H="HBHPH_HHD$(H$`HH9tL.HH$HHJp@fHHD$(H$`HH9tLHH AGraphClusterStorageBuilderProcessed out of vertices.Merging clusters using transition edge UHAWAVAUATSH8HHdH%(HE1HHHHHHHHHHA8IHDžHH@HH HHHfHHLxLHXHH@HSHCHHHHBtH8ILHtH1LHLHjHI~MN LLXZMtH=Al$LMtH=Al$HHLHHHAHHAHHtDH=@HCHHCHH@f.HCHHCHHH=tHfDAD$PAT$ I$LPAD$ PAT$ I$LPAD$PAT$I$LPAD$ PAT$ I$LPLLI|$H5'HI|$HLH5HHLLHHHHMmHpL LH1LH H;tHTHHHHt1HHHHHH}HEdH3%(kHe[A\A]A^A_]I$LPAD$ zDI$LPAD$ DH8HHmHTLLIH5 HIH5HIHLHH5HHIwHL LHHH H;tHHHHHHH HH9tHHHtHHtHHHHH HH9pfBuilding clustersExtracting substorageCopying substoragesFinished building clustersAWAVIAUATIUSHHdH%(H$1Ht$H8HtHHH8HHtHH$Ht$LLHH8IHtHH$HT$Hfo$HHCHC0HHCH$C H\$HCH$Lt$0HT$ fo$Hu@LHD$0HD$@HC8H$)D$PHD$`Lt$ HD$8H$HD$HH$ I~8HT$(o$8HuxHD$hHD$xHD$pH$0$HDŽ$H|$(H$H|$LLHH8IHtHH8IHtHH8IHtHu`I~8LH}xH}@HH$dH3 %(HH[]A\A]A^A_fL$pLI|$H5M}L$PIt$LL$PLHLH$PIL9tLfDL$pLI|$H5HD$@1HtfHp@HHuHD$xHtf.Hp@HHuI|$M}L$PIt$LL$PLHLH$PIL9tLfDL$pLI|$H5HsI|$M}L$PIt$LL$PLHLH$PIL9tLEL$pLI|$H5MuL$PIt$LL$PLHLH$PIL9tL^fDL$pLI|$H5L$PIt$HmLL$PLHHH$PIL9tLfDL$pLI|$H5L$PIt$HmLL$PLHHH$PIL9tLHLHHH$PIHL9tHLHH$PIHL9tILI~8MLHLxILIIHSH$PIIL9tMAUATUSHHH,HttH]ILCx%DHHtpL@x1HHLHwH9uXL9uHCI9D$uI$HCIL!L!H9tI$L!L#kL9u&HH[]A\A]H1[H]A\A]H H5H=HHN1HHwIHLHtHHt HHH=HHN1HHwIHLHtHHt H1HScaffoldVertexSimpleEntryExtractor/srv/scratch/marinovg/spades-cloudspades-paper/assembler/src/common/barcode_index/scaffold_vertex_index_builder.hppExtracting entry from pathTail threshold: Current tail: Current entry size: Result size: AWAVIAUATIUSHxH|$PdH%(H$h1H8HtH1HI<$IH@XH|$PI+G8I^HDŽ$HDŽ$HDŽ$HHHHIG@I+GHHHIW0I+W GHGHG(DŽ$?HDŽ$HDŽ$HHHD$@HGHGHG H$I<$HD$XH$H$HH(Ll$pHLLl$LHH|$xHD$8HtH8HHtH1H|$@H$HD$ )HD$ H$H$H9D$@wH|$8H9|$ gIO H$HI+G(HHHxHHZIO8HHH)HHHH@INHD$xHHT$pH!HB H+AI9F0`HD$8H+D$ HD$H8HHtH1IF(MfH\$HD$(ID$HHxH@PHHD$ID$HxHXHHD$H1HD$0/@HD$Lk(HCPH9D$r L9l$(HHID$Ht$HxH8H9uHD$0H9II]H$1HHH$LIMI0HN*HHHH1IHHHI9H9uIHpIUHIHL9xH8HHtH1)HH#T$pH|$ IFHz HH+PHD$0HHT$ HH$H$H9D$@H$Hu ?HHt6H{vLt$PHkHLHtHHLHHuH8HHtH1H|$XH$hdH3%(HD$PHx[]A\A]A^A_@H9l$HHC HD$`HtHELmHfDIUH|$XHHH@LHPHWHHHHHHH$HH{H5Ht$H{LeH$HsHL$LHv1LH$HH9tHnH$HH{H5H$H{LeH$HsHL$LH{1LH$HH9tHT$(HsSHT$8HSHT$@HS HF1HD$HHD$0HD$HHC(HEHD$8HD$@HH|$HtH$dH3 %(HH[]A\A]A^ÐLd$H$MH=utAT$HD$Ld$BAD$HT$LHH|$HtMtLHt$0UIT$HD$Ld$@IT$HD$Ld$CHCHCHC HC(@HD$HD$DHD$HD$0HHt$0HH|$HtHH|$PIHL9tLHH|$HHtMtLHAWAVHAUATUHSH?IHHHHHHL$H4$HT$Hl$dH %(HL$81AEH{HtLkLH9\$~nHKH, HM< LuLLHM,LMDLDHLIEMmH{HI9tMtH=uAEfHD$uIILH?III9*Lt$ Ht$LHCII?IIH;$K@@H{HtHD$HD$HCIULHH?HHL9,$ILLHLHHLtFHEH{HHEH9tHtH=w@wfDHLfHD$ H{IvHH|$(HtHD$8dH3%(uNHH[]A\A]A^A_DHHlHIHHHHxLH HrHH|$(HHtHUH)HAWAVAUATSH8dH%(HE1HHIL}HFIHH?HHIHEIIb@HSHEH]HHuLjLLH}XZHtHEHtKHHHEtHII\$I$HtTH=uSHEH]BCHtHHEdH3%(u%He[A\A]A^A_]DHEHECH}IHtHtHLContainsVertex(start)ContainsVertex(end)UHAWAVAUATISIH8LHdH%(HE1HGHGMHEHEHER1Lu!@H]HH]M$$Mt^HEH9t-HtID$HID$HHCtH=u@fIT$HLLuM$$H]MuLeHI9tJL)?HHLHH?HH)HEHHEHEHLHEH]HEHI8LeH9u3@HxHLeHHuHH9LsLLeLHLLLeH HLLeHjHLLeHLLLeHZHuH}HLejZYQH]HEHH9N@I_I;_ZHLuL+uHCHHCLHHtHH9qLLeHHCILEH}LsI9teHH@FHHI9t3HtH2H1HrHHqtH=uHFHI9uHI)H}IJDHCI_HHuI_fDLef.Le@fH}f.H}HMdH3 %(LHe[A\A]A^A_]fLHLLeG11~H H5H=/H H5H=0HEHEH}HLHUHAWAVAUATSHdH%(HE1HFHH8HLLLpHDž@HDžHHDžPM+11L@/@@HHHHHM$$MDHPH9 HtID$HID$HHCtH=u@뭐HGLHH@IHILHLI~pI~8LLLHu?IHHHhI}hH8I}8HI}?HMdH3 %(cHe[A\A]A^A_]D1@IT$LMM$$HHM@L@HI9tJL)?HHLHH?HH)H@HIHLH@HHHL@H9u8f.HxHHHHHH9LsI}8MLHI}8LMHI}8HHI}8HMHI}8LHaHHHH@MjZYt$H@HHHH9M@H@?I}pI}8L?HfD 11H H5H=/H H5H=0HLHHLHLHLHAUHGATUSHIHH9tgLn HHL}HEH9Ht0HHx LItAI}HHEIDH[]A\A]fDH(tHG HHx ueHLH[]A\A]LLtYHU 1H9tHHp LItH{HIEIEpHU H1[]A\A]H1MAWAVIAUATIUSHHHLD$L $L9t,L9t'Lm Lc LLt,HHL9uHD$H$H[]A\A]A^A_@LLtHH@Ll$H4$LLHuHHH$HfDLHLAWAVAUATMUSMHHHH4$HL$H;$t_H;l$L{ tpLu LLLLLHtLHLHHIHH;$uHLL[]A\A]A^A_Lx LLLHtLHLHHIH;$HuDLLu HHHHAWAVIAUATHUSHHIHHdH%(HD$1HGH)H)HHHL4L9HIUUUUUUUILtwIwHSCHCHC(HSHS HtKHHH$HHHQHuHKHHHQHuIW(HK HCHS(LEHMM9LMx0MH IPM)ILHI!LOLRIMTf.HpXHZHXHZHX L^Hr Hp(HBHRHRHB H0H0I9t>HtHrLXHu@H@H0LXLXH0H@I9uKRHI9I\`ID$HI0L)H HHHH!HtRHHRfDDHSDSLPLSLPLS LJHP H@H@H@H@ HS(H0H0H9t>HtHPLKHuCHCH0LKLKH0HCH9uI9tRMx0L)H HHHH!LdIIM DI0HwM9LuHMHtHKvLmH]HIHD$dH3%(Lmu]H[]A\A]A^A_@AK::operator==(const restricted::pure_pointer&) const [with T = omnigraph::PairedVertex]bool path_extend::SimpleGraph::ContainsEdge(const Vertex&, const Vertex&) const [with Vertex = path_extend::scaffold_graph::ScaffoldVertex]void path_extend::SimpleGraph::AddEdge(const Vertex&, const Vertex&) [with Vertex = path_extend::scaffold_graph::ScaffoldVertex]void cluster_storage::Cluster::MappingInfo::Merge(const cluster_storage::Cluster::MappingInfo&)void cluster_storage::ClusterMerger::MergeClustersOnEdges(const ScaffoldVertex&, const ScaffoldVertex&, cluster_storage::ClusterStorage&, cluster_storage::InternalEdgeClusterStorage&, uint64_t, uint64_t) constcluster_storage::Cluster::MappingInfo cluster_storage::Cluster::GetMapping(const ScaffoldVertex&) conststatic const Config& config_common::config::get() [with Config = debruijn_graph::config::debruijn_config]bool restricted::pure_pointer::operator==(const restricted::pure_pointer&) const [with T = 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rHL9HuHfH*T$IH=H@HH9H|$ HL|$pLL|$H#HP@H@8HD$pIFHT$xHxI~Ht$(HHHT$HHD$PHHD$@D$HHD$hHT$XHT$`Hu@HD$HtWLHHD$pHHHQHuHL$XH f.HHQHuHUXHL$`HD$PHT$hHD$HDŽ$D$xHDŽ$HPH$H$Hs@HqH|$HL$8H|$8IH HHBHuH$L HHBHuLsXH$L$L$HEHLuXH8H9taLc@E1H8@Mt=HH HLHHRHtH9J sHRHuH9t H;N rIHH9uM)H|$LHt$PH|$MxWfI*L$^f(bHT$(Ht$ LIBHfHH H*XD$eLfHAL H*XLsXE1LHT$(Ht$ IeHT$(Ht$ LHxfH*\$HfHH H*XD$H|$Ht$PHHH=HH=HH5Hvoid path_extend::PathScaffolder::MergeUnivocalEdges(const std::vector&) constvoid path_extend::BidirectionalPath::PushBack(const path_extend::BidirectionalPath&, const path_extend::Gap&)path_extend::BidirectionalPath* path_extend::scaffold_graph::PathGetter::GetPathFromScaffoldVertex(const path_extend::scaffold_graph::ScaffoldVertex&)static const Config& config_common::config::get() [with Config = debruijn_graph::config::debruijn_config]void path_extend::BidirectionalPath::PushBack(debruijn_graph::EdgeId, const path_extend::Gap&)size_t path_extend::BidirectionalPath::Length() constbarcode_index::BarcodeIndexInfoExtractor::const_intersection_iterator::reference barcode_index::BarcodeIndexInfoExtractor::const_intersection_iterator::operator*() [with barcode_entry_t = barcode_index::FrameEdgeEntry; barcode_index::BarcodeIndexInfoExtractor::const_intersection_iterator::reference = barcode_index::BarcodeIndexInfoExtractor::IntersectionData]void btree::btree_iterator::increment_slow() [with Node = const btree::btree_node >, std::less > >, std::allocator > >, 256> >; Reference = const restricted::pure_pointer >&; Pointer = const restricted::pure_pointer >*]btree::safe_btree_iterator::reference btree::safe_btree_iterator::operator*() const [with Tree = const btree::safe_btree >, std::less > >, std::allocator > >, 256> >; Iterator = btree::btree_iterator >, std::less > >, std::allocator > >, 256> >, const restricted::pure_pointer >&, const restricted::pure_pointer >*>; btree::safe_btree_iterator::reference = const restricted::pure_pointer >&]const Block& boost::dynamic_bitset::m_highest_block() const [with Block = long unsigned int; Allocator = std::allocator]boost::dynamic_bitset::~dynamic_bitset() [with Block = long unsigned int; Allocator = std::allocator]bool restricted::pure_pointer::operator==(const restricted::pure_pointer&) const [with T = omnigraph::PairedEdge]St11_Mutex_baseILN9__gnu_cxx12_Lock_policyE2EESt16_Sp_counted_baseILN9__gnu_cxx12_Lock_policyE2EEN13barcode_index20AbstractBarcodeIndexEN13barcode_index33AbstractBarcodeIndexInfoExtractorEN13barcode_index25BarcodeIndexInfoExtractorINS_14FrameEdgeEntryEEEN13barcode_index30FrameBarcodeIndexInfoExtractorEN13barcode_index12BarcodeIndexINS_14FrameEdgeEntryEEESt19_Sp_make_shared_tagSt23_Sp_counted_ptr_inplaceIN13barcode_index30FrameBarcodeIndexInfoExtractorESaIS1_ELN9__gnu_cxx12_Lock_policyE2EE?GCC: (Ubuntu 7.5.0-3ubuntu1~18.04) 7.5.0zRx 0D X4Af I Cx 4Kc A 0BAD G0f  AABH LBBI B(H0A8L?n 8A0A(B BBBD @D  G L\BBB B(D0A8MQ 8A0A(B BBBK .$AL C A HBBD A(D0 (A ABBJ t(A ABBH\BBB 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Ht fo HHHPLx LHLHDž HDž0H(H8H@LHH8H9Hc@nHHHrHH Ho(LIHIH9 LHIEHHI~IIH9HHHH!@HIfDL@LIH5Hs@IM&L IwLLL LHLH IL9tL@L@LIH5Hs0IM&L IwLLL LHLH IL9tL@L@LIH5M&L IwLLL LHLH IL9tL8fL@LIH5Hs(IM&L IwLLL LHLH IL9tL@AO9HEHPLx LHLH@H(H8LHHDž HDž0LHII7H90 HH;@:8H8HHtH1HH9HCLSPH{@HS8LK0LC(HPHCHHXtH=@HsHHfARWRLLHXH HtLLH@fIIHxHHhKfDH8HHtHXHHL!L9=H$HH H@HL9Hof.%YH(H 1sHHDžPHDžXHDž`HH)HIHHt5HH9=HHH(H HH)IHH9HPHXH`tHLH8HLLHXhHPHtH8HHtHFH HtHHHHtHHtHHtHEdH3%(He[A\A]A^A_]fAO9HfDHH9HvHH fDHLH)fHHAO9H fDHxHhH5HH`H(H HDžPHDžXHDž`HH)HpHHWHH9HpH(H HII)HpHPHXHH9H`tLHLpLpH8HLLHXhH`HPHtHHxHHHpH HHL HpLHHH HH9tHx@HL@H8HHHL@LIH5CIL IwHLLL LHHH IL9tLHHpD=VAO9HnfDAO9H$fDHH9HvfHH rfDH9HviHHufD@,L@LHH+IHH5HHIwHHH HHL HLHHH HH9tL fDL@LIH5IL IwHLLL LHHH IL9tLLp1HHXHHHHH HHH HH9tLHHtHHLHHLHH HtHHH HH9tHHH HH9tHxH H5H=}H0LHHH HH9tL?HHHPHHhhHHPHHHXHH(h(SHH~H5H9t?*tuHC[1[SHH~H5H9t?*tuHC[1[SHH~H5H9t?*tuHC[1[UHSHHHH8HtHk0HtH=tmt=HH߾x[]fEPUuHEHPE PU DHEHPE uHEHPSH_ HHGHtH=tkt2[CPSuHHPC PS fDHHPC uHH[H@SH_(HHGHtH=tkt2[CPSuHHPC PS fDHHPC uHH[H@SH_ HHGHtH=tkt2[CPSuHHPC PS fDHHPC uHH[H@=== Stack Trace ===AWAVH5AUATH=USHXdH%(H$H1HHH@HHr{87sCH=HHHHÉIHōCL%L=Ml*DsCH=HHL9H]HtbHH=HHI$H@IH{8uHH H@0L9tHwI$HxLw LH$HdH3%(uKHX[]A\A]A^A_HHH H@0H9HAborted by assert: AUATIUSH5HH=HHIH=LDHH/srv/scratch/marinovg/spades-cloudspades-paper/assembler/ext/include/boost/optional/optional.hppLongEdgeScoreHistogramConstructor/srv/scratch/marinovg/spades-cloudspades-paper/assembler/src/common/modules/path_extend/read_cloud_path_extend/scaffold_graph_construction/containment_index_threshold_finder.cppvector::_M_range_check: __n (which is %zu) >= this->size() (which is %zu)LabeledDistributionThresholdFinderNot enough ultralong edges, setting containment index threshold at this->is_initialized()Inserting score: [, ], []max_distance >= min_distance General Effective max distance: left_start < left_endright_start < right_endContainmentIndexFunctionLeft barcodes: Right barcodes: Intersection: math::ge(percent, 0.0)math::le(percent, 1.0)interesting_edges_.size() > 0Edge length: Offset: Processed out of interesting edges score samplesEstimating score thresholdLeft block length: Right block length: Max distance: training edges. percentile value: Estimated score threshold:  A /3) fVl J B 1   1  - 1   c- _JJ@ *  ? g   0&'  /' & /&&"%&/%%%'(%%'%'''&O'3&%!'"D'"'#%#3'$&%'''%AWAVIAUATIUSHHHOHHI)H)HHH4IH9LH$H]HMMH$III)MtHII9t LHLHL$L$HL$L$IODM)L9tLLLIMHtHLmLuL}H[]A\A]A^A_L<FfDHH9-HuME1E1>H=SHtot+[fGPWuHPC PS HPC uHH[H@HSHHH8HtH{0Ht [D[AWAVAUATUSHHHHuH?IHI)H)HHH IH9LHT$H}HuLxHT$IIMt oAEH9t8LHHtoHHH9uHGHH)HHM| H9t5HLfDHtoHHH9uHH)HM|HtLeL}LuH[]A\A]A^A_f.HIHH9HuAE1E1 Ht3ATIUSHHsLHkHHHu[]A\@AWAVIAUATIUSHHHOHHI)H)HHH4IH9LH$H]HMMH$III)Mt AI9t LHLHL$L$HL$L$IODM)L9tLLLIMHtHLmLuL}H[]A\A]A^A_DL<FfDHH9-HuME1E1>HO(E1HHt)uJHHItEAu HHHwHcG HIH9tHHHoGfIA9uHHH1Ht(u/HHHtWu HHf.HSHHHH(HWH9t1H;Ht'H$HT$HCD$C HC(H@HHHHC[DHH@DP1D9t\ 2LKAAAAIcHHL9Ls1B4HcAHHL9L0rfAD9uց?8u%HcH{PH@8u?DPA9tHCS HHHC[EAf.ASD6HHCS H9AULoATUSIHLHI9u;}fH9tHLHH)L$L$HMI9tD Ef.wCHCf.w8H@HP@f.wHI9uH[]A\A]ÐfDH/srv/scratch/marinovg/spades-cloudspades-paper/assembler/src/common/assembly_graph/core/order_and_law.hppptr_.get() == rhs.ptr_.get()AUATUSHHH,HttH]ILCx%DHHtpL@x1HHLHwH9uXL9uHCI9D$uI$HCIL!L!H9tI$L!L#kL9u&HH[]A\A]H1[H]A\A]H H5H=HHN1HHwIHLHtHHt H1H_Map_base::atAWAVIAUATIUSIMH8HHGHL$HJ1HGH~dH%(HD$(1HLD$HwHHLHHHHhhIELHxHXHHD$ HD$E@HSPHC HHD$ L9HSXHH;T$„t HL$H;K(vJHHIELHxH8H9uHL$(dH3 %(LufH8[]A\A]A^A_@IvI;vtHtHHIv@HT$LH=I>HHtHHBSHӃII?IIL9I@IALHHIJLAf.w f(ILL9B I|HtmHAHH?HHH9~? f.w2f HHf.v HJLHH?HHH9|A[fHDHHH?HHH9tLtfHD LA HPDHtL/srv/scratch/marinovg/spades-cloudspades-paper/assembler/ext/include/btree/btree.hnode->parent()->child(node->position()) == nodeposition >= node->count()position < node->count()HLDOA8A@tjD9uRI@8AHL;Ht%HH9uopH9HujHȉWHH9tHD9AMcK8HuH8tHGHDLDOHH H5H=H H5H=H H5H=/srv/scratch/marinovg/spades-cloudspades-paper/assembler/ext/include/btree/safe_btree.hgeneration_ > 0AWAVAUATIUSH_IHHHdH%(HD$81ID$HI|$0LwL9L?MLDXE1DA9t]AML$HcHHL;Lv4_B HcAHHL9L:D9uA?8u.McJwD@H@8:DXE9tAID$ ED$(OIHHIu III9vMcMt$IPHoAD$IIJ<L!HHHHu HIT$8HHH9A|$HtjHL!A|$@HH8L@@tHHLL!Hp@HH8H9r>HIT$8>fDAEB`DHzLH9sHD$8dH3%(HH[]A\A]A^A_ÐID$ McD$(A|$@NHH9txWPI9|HHI$Lp LLt$(IHT$ LHD$H$HD$Hl$LHII>H98I|$ HHcPHHHH:L!H1HIT$8AD$@IL$0AL9Lq1ID$ AT$(MALHH!H9H H5H=H HBH)HA9IMcMt$A~9x+HH/H'H H5H=}1H=HH=HH5Hvirtual boost::optional path_extend::ShortEdgeScoreFunction::GetScoreFromTwoFragments(path_extend::EdgeId, size_t, size_t, size_t, size_t) constvirtual boost::optional path_extend::ContainmentIndexFunction::GetScoreFromTwoFragments(path_extend::EdgeId, size_t, size_t, size_t, size_t) constvoid btree::btree_iterator::increment_slow() [with Node = const btree::btree_node >, std::less > >, std::allocator > >, 256> >; Reference = const restricted::pure_pointer >&; Pointer = const restricted::pure_pointer >*]btree::safe_btree_iterator::reference btree::safe_btree_iterator::operator*() const [with Tree = const btree::safe_btree >, std::less > >, std::allocator > >, 256> >; Iterator = btree::btree_iterator >, std::less > >, std::allocator > >, 256> >, const restricted::pure_pointer >&, const restricted::pure_pointer >*>; btree::safe_btree_iterator::reference = const restricted::pure_pointer >&]double path_extend::PercentileGetter::GetPercentile(path_extend::cluster_model::SimpleDistribution, double)std::vector path_extend::LongEdgeScoreHistogramConstructor::ConstructDistanceDistribution(size_t, size_t) constbool restricted::pure_pointer::operator==(const restricted::pure_pointer&) const [with T = omnigraph::PairedEdge]boost::optional::reference_type boost::optional::get() [with T = double; boost::optional::reference_type = double&]virtual path_extend::AbstractScoreHistogramConstructor::ScoreDistribution path_extend::LongEdgeScoreHistogramConstructor::ConstructScoreDistribution() constSt11_Mutex_baseILN9__gnu_cxx12_Lock_policyE2EESt16_Sp_counted_baseILN9__gnu_cxx12_Lock_policyE2EEN11path_extend40ReadCloudScoreFunctionThresholdEstimatorEN11path_extend33AbstractScoreHistogramConstructorEN11path_extend27SegmentBarcodeScoreFunctionEN11path_extend24ContainmentIndexFunctionEN11path_extend22ShortEdgeScoreFunctionEN11path_extend33LongEdgeScoreHistogramConstructorEN11path_extend37LabeledDistributionThresholdEstimatorESt19_Sp_make_shared_tagSt23_Sp_counted_ptr_inplaceIN11path_extend24ContainmentIndexFunctionESaIS1_ELN9__gnu_cxx12_Lock_policyE2EESt23_Sp_counted_ptr_inplaceIN11path_extend37LabeledDistributionThresholdEstimatorESaIS1_ELN9__gnu_cxx12_Lock_policyE2EESt23_Sp_counted_ptr_inplaceIN11path_extend22ShortEdgeScoreFunctionESaIS1_ELN9__gnu_cxx12_Lock_policyE2EE?C?MbP??GCC: (Ubuntu 7.5.0-3ubuntu1~18.04) 7.5.0zRx 0DXl   4Af I C4Af I C$4Af I C(DAHG o IAG p}Af I G}Af I G}Af I GLBBI B(H0A8L?n 8A0A(B BBBD $ PBBD A(X0zPLRx `$`BBB B(A0A8GBMA: 8A0A(B BBBH g6GGH.BBE B(D0A8GP 8A0A(B BBBI <$!BBA A(D@ (A ABBC bIM J |AD K wAD K w2H^ J A@HIBB A(D0 (A BBBH P(jBBB B(D0A8O 8A0A(B BBBJ L|lBBB B(D0A8Lp 8A0A(B BBBG HaBBB B(A0A8JP 8A0A(B BBBK ,\:GDA dABEH.BBE B(D0A8GP 8A0A(B BBBF tE,RAG E EF  EA D0KFA A(M@(A ABBBH@LxADJ J(I0L(A I AAF D(B0F(A D AAE LBBA A(D0 (D ABBI D (C DBBA ?Dl H FLBBE B(D0A8Jp 8A0A(B BBBE PDBBB B(A0A8G) 8A0A(B BBBD LBBB B(A0A8D 8A0A(B BBBC ,+E J TLBKB H(A0`8I@R8A0Y8T@W8A0C (A BBBA 0BFK O0  AABG D0BBF A(D0DP 0A(A BBBA PgBBB B(D0A8G 8A0A(B BBBF $t )Ds I z F K A L @BBB B(K0A8U 8A0A(B BBBB 8!AC I% . `. 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A&fLT$I!I!M9L\$L9\$AAWAVHm۶m۶mAUATIUSIHHMD$H?LI)H)HHHH IH9LHT$I<$MD$HX8HT$IIMt$oHB0AoBIF0AFoB AF H9HG8HHLH)HHm۶m۶ HHHH!HH H)It f.HHt!ooBCoB C HB0HC0HK8H8H9uHpL9ttHE8LIm۶m۶ HH)HIIL!HHH)HfHt!oHF0oFHC0CoF C H8H8H9uHtM,$I\$M|$H[]A\A]A^A_fDL<I)I^H$I$IH9DHuͻ8E1E1TDijkstra%lu startedAdding new entry to queueEntry: vertex distance finishedAll neighbours of vertex processedChecking new neighbour of vertex /srv/scratch/marinovg/spades-cloudspades-paper/assembler/src/common/assembly_graph/dijkstra/dijkstra_algorithm.hppCheckPutVertex returned true and new entry is addedAWAVAUATIUSHdH%(H$1HHt$PHT$@H!HL$8LD$HHHHu HRHHHD$H$HD$H$ HD$(f.H;l$%H8HHtH1_LuID$pIHIL$hM!HI_t1HfHH@HtH9X(sH@HuH9t H9Z(HEHD$IHD$ H8IHtH1/ID$Ht$8H+pIG HIH8HD$0HtH1M;|$0|H8HHH1H|$Lt$(H5!LL$LD$@H5H 1LH$H$LH5HH$IEH9tHD$LHHpL$LH|1HH$IL9tH|$H;l$H8HHt H1f.H$dH3%(HĨ[]A\A]A^A_H|$Lt$(H5!LL$LD$@H5H 1LH$H$LH5HH$IEH9tHD$LHHpL$LHp1HH$IL9tH|$fDH8IHtH1HD$ L|$pH$L$HD$xHD$PH$HD$@H$HD$H$HD$HHpH;pHt/foD$pfo$Ffo$F 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Starting search already counted. Proceeding to next queue entry.Check for processing vertex failed. Proceeding to the next queue entry.Finished dijkstra run from vertex Dijkstra iteration startedVertex with distance fetched from queueDistance to vertex is found to be at distance from vertex UHAWAVAUATISHH(HdH%(HE1H8HtH1I HHspHCPHDž HDž(HDž0HHC`LHHHChHHCpHǃHHCxHHHHHHHǃHǃHHHHHHH(H;0HǃHǃHHHHCHHDž@HDž`HDžpHHHHPHHXHh Ht.fo@foPFfo`F HpHF0H8H(oFHHH 1)oF)oF)HFH)HHHm۶m۶mHHHHH@HH@H@HHPH8IHtH1O L@IGHH HH(H9 {HH8IHtH1H HHHLo(oGLg0)HHGLw HHHH HHRHtH9J(sHRHuH9HtH;H(s+HHHHHH HLp8Lh@L`HHp0H(HHPH)H8 H(H8IHtH1HCpHHtJHHDHH@HtH;P(vH@HuH;Ht H;Q(HHHfoH)IH8HtH1HCPHH;C@HCPoCXH8IHH1LHH5LIwM$$LL LH1LH8IH3(3(5).2)1*5*=1+1+51H=HH=HH5Hdistance_t omnigraph::Dijkstra::GetDistance(omnigraph::Dijkstra::VertexId) const [with Graph = debruijn_graph::DeBruijnGraph; DijkstraSettings = omnigraph::ComposedDijkstraSettings, omnigraph::BoundProcessChecker, omnigraph::BoundPutChecker, omnigraph::BackwardNeighbourIteratorFactory, long unsigned int>; distance_t = long unsigned int; omnigraph::Dijkstra::VertexId = restricted::pure_pointer >]distance_t omnigraph::Dijkstra::GetDistance(omnigraph::Dijkstra::VertexId) const [with Graph = debruijn_graph::DeBruijnGraph; DijkstraSettings = omnigraph::ComposedDijkstraSettings, omnigraph::BoundProcessChecker, omnigraph::BoundPutChecker, omnigraph::ForwardNeighbourIteratorFactory, long unsigned int>; distance_t = long unsigned int; omnigraph::Dijkstra::VertexId = restricted::pure_pointer >]bool restricted::pure_pointer::operator==(const restricted::pure_pointer&) const [with T = omnigraph::PairedVertex]N9omnigraph16LengthCalculatorIN14debruijn_graph13DeBruijnGraphEmEEN9omnigraph20VertexProcessCheckerIN14debruijn_graph13DeBruijnGraphEmEEN9omnigraph19BoundProcessCheckerIN14debruijn_graph13DeBruijnGraphEmEEN9omnigraph16VertexPutCheckerIN14debruijn_graph13DeBruijnGraphEmEEN9omnigraph15BoundPutCheckerIN14debruijn_graph13DeBruijnGraphEmEEGCC: (Ubuntu 7.5.0-3ubuntu1~18.04) 7.5.0zRx 0DXl#X#p   4 H \ p H~BBE B(E0A8P@u 8D0A(B BBBE 0BAD G0f  AABH LBBI B(H0A8L?n 8A0A(B BBBD T6$hAL C A bIM J |,:GDA dABE,:GDA dABE,:GDA dABE,@:GDA dABE`pBBF B(D0A8G@P 8F0A(B BBBI a 8I0A(B BBBE (AAD U AAC 0:AAJ N CAB RFAL4BBD A(Q0k (F ABBH l (D FBBF HaBBB B(A0A8JP 8A0A(B BBBK HFBB B(D0A8KP< 8A0A(B BBBF (AAD U AAC lHBFA A(J0E (A ABBA Q (G ABBK D (F ABBI D(F ABBHBBD A(O@i (D ABBF n(A ABBD y C l \BBE B(D0A8DpYxJGGGGGGIpX 8A0A(B BBBD H(BBL B(D0A8JP 8A0A(B BBBG zPLRx t$D BBB B(D0A8G 8A0A(B BBBH NGKGGGGI@AC HD.@W. 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HSHH~H5H9t?*tuHC[1[SHH~H5H9t?*tuHC[1[SHH~H5H9t?*tuHC[1[SHH~H5H9t?*tuHC[1[SHH~H5H9t?*tuHC[1[SHH~H5H9t?*tuHC[1[SHH~H5H9t?*tuHC[1[SHH~H5H9t?*tuHC[1[HSHHHHCH9tH߾8[0P0H @basic_string::_M_construct null not validBarcoded path filter with paired infopaired_lib_index.is_initialized()/srv/scratch/marinovg/spades-cloudspades-paper/assembler/src/common/modules/path_extend/read_cloud_path_extend/scaffold_graph_construction/construction_callers.cppGemCode paired library was not foundLong edge pair gap closer params:=== Stack Trace ===AWAVH5AUATH=USHXdH%(H$H1HHH@HHr{87sCH=HHHHÉIHōCL%L=Ml*DsCH=HHL9H]HtbHH=HHI$H@IH{8uHH H@0L9tHwI$HxLw LH$HdH3%(uKHX[]A\A]A^A_HHH H@0H9HVerification of expression 'false' failed in function ''. In file '' on line . Message ''./srv/scratch/marinovg/spades-cloudspades-paper/assembler/src/common/barcode_index/scaffold_vertex_index.hppHead entry extractor from BarcodeIndexInfoExtractorWrapper is currently not supportedATUSHH\$ dH%(H$1HH{H5H{H5H{H5H{H5}H{H5 H{H5kH{H5 H{H5 HHH5UHH5HHHsHHT$H4$H=HH<$HEH9tHsHHT$H4$H=HH<$HH9tH=H=H H5H=HHHH<$HIH9tL'+0  Long edge score filterBarcoded path filterConjugate filterTransitive filterbasic_string::append/ General Count threshold: Tail threshold: Length threshold: Estimated score threshold is too small, setting as default thresholdFmNvXAh<c'8=  *nF;       ///5,3a( 6Bx-bi?7 EC    d    w  oSHH8HCHH9tH{H(H9t [[AUATUSHLgHI9tnIDmtyHI9tPHkHtH=u݋EPUuHEHPE PU uHEHHPI9u@I]Ht7HH[]A\A]DHEHPE f.H[]A\A]is_initialized()Config not initialized/srv/scratch/marinovg/spades-cloudspades-paper/assembler/src/common/pipeline/config_singl.hppATUSHdH%(H$1=H\$ HH{H5H{H5H{H5H{H5qH{H5 H{H5]H{H5 H{!H5 HHH5HH5HHHsHHT$H4$H=HH<$HEH9tHsHHT$H4$H=HH<$HH9tH=H==Ht-H$dH3 %(HHİ[]A\H=tHHHH=HH HHH@HHHHH`HHHHHXHH HHHHH HHH HH HHHHHH HH HH HHH HH HHH(HH HHH HHhHHH HHHHHHHH HHHHH HH HHH(HH HHH@HH HHH HH HHHPHHHHHHHHHHHHH HHH@HHHHHHHHHHHHHHHHH HHHHHHH5H=FH H5H=!H<$HIH9tLHHHAWAVIAUATIUSHHHOHHI)H)HHH4IH9LH$H]HMMH$III)MtHII9t LHLHL$L$HL$L$IODM)L9tLLLIMHtHLmLuL}H[]A\A]A^A_L<FfDHH9-HuME1E1>H=SHtot+[fGPWuHPC PS HPC uHH[H@/srv/scratch/marinovg/spades-cloudspades-paper/assembler/src/common/modules/path_extend/scaffolder2015/scaffold_vertex.hppvertex.GetType() == EdgeUSHHH8dH%(HD$(1HH|$HH\$Hl$HtH=uQCHHHtHH$HT$H$HT$HL$(dH3 %(uOH8[]CH|$HtWH H5H=HHtHHHSHHH8HtH{HHHCH9t [fD[HSHHHHHtH{8HtH{HHHCH9t[[HSHHHHHtH{8HtH{HHHCH9t[[HSHHHHHtH{8HtH{HHHCH9t[[HSHHGH8HtH{ HHCHt[f[HHGH(Ht HSHHGH8HtH{ HHCHt[f[HSHHH8HtHH{HHCH9tH߾H[HSHHHHHtH{8HtHH{HHCH9tH߾h[HSHHHHHtH{8HtHH{HHCH9tH߾`[HSHHHHHtH{8HtHH{HHCH9tH߾X[Ht3ATIUSHHsLHkHHHu[]A\@HtKATIUSHHsLH{ HC0HkH9tHHHu[]A\f.Ht[ATIUSHHsLH{PHC`HkH9tH{0HC@H9tHHHu[]A\AWAVAUATIUSHHHHwI$ I$0H9tI$I$H9tI$I$H9tI$I$H9t&@H;HCH9tH 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H1HAUATUSHHH(dH%(HD$1HH#HHP@H@8H$HGHT$HxH}IHI8HI|$L9t~Hh@HX8E1fDHt=HO HHHHRHtH9J sHRHuH9t H;N rIL9HuH\$dH3%(LuH([]A\A]E1AUATIUSHHHHodH%(HD$81H\$ HEHL` LHHD$HT$HT$HH$I9HH}HH!HP@H@8HHT$(HD$ H}Ht$II8HI|$L9Hh@HX8E1Ht=HO HHHHRHtH9J sHRHuH9t H;N rIL9HuH\$8dH3%(Lu#HH[]A\A]HT$HHAIE1_Map_base::atHHN1HHwIHLHtHHt HHH=HHHH@@HATUSH H_dH%(HD$1HHHL`H$HHT$I9u-H{HHH@@HL$dH3 %(uH []A\HHAATUSH H_dH%(HD$1HHHL`HH!HP@H@8H$HHT$I9u0H{HHH@@HL$dH3 %(uH []A\HHAAUHGATUSHIHH9tL*L;n Hs;HGH9Ht#HL;h HvjHxHEHEH[]A\A]ÐvfHO 1H9HtHL;h Hs+H{HEHDH(t H_ HH9C r4HLH[]A\A]HH1[]A\A]HH1[]A\A]AWAVIAUATUSHxH_Ll$0dH%(HD$h1LHD$0HCLHT$8HD$HD$HD$ HxH{LL`8HHhHH\$I9tWLt$%HtHE HHHH\$I9Ht+H;\$ uHU HLHH\$I9HuIEHl$MwMgD$8HD$@HD$HIHD$PHD$XH9tM9tID$ H9EsSHH9uHt$@LH\$XH|$HtHL$hdH3 %(HHx[]A\A]A^A_vLI뉐LHLHIIuLHIfDHD$tV(I|$HEIMLLLD$HI@ LD$HD$XLIkfIEH9tHB H9ED$Ht$@LHH|$HtHH|$HHuAWAVIAUATUSHL}HXLfHH\$0dH%(HD$H1I$HLhHLHD$ HT$(LHD$HT$HHL$ HT$AH\$0HD$8EHEL}L} H)HE(IIHLGf(I|$HLLLIF HE(LHIt:HHHHIItHD$uI9tHB H9D$@H\$0HtHHL$HdH3 %(HuHX[]A\A]A^A_HuHHH|$0HtHAWLAVAUATLqUSLjIHHGLL HiHZGHG(L<$I9tI9tHE H9C s$HHI9uHL[]A\A]A^A_fvHH빐H4$HS LHH$IuLHH$HHD$t>(I|$HC H$LLL$I@ ID$(L$DI9tHB H9C D$It$HLHAWAVIAUATIUSIHHHGH)H)HH4$HH IH9LHT$HT$HXHIH $Ht%HHHBHHAtH=Y@I}L9`HHAHHI9t3HtHH HHHHJtH=uHAHI9uIMHLH)HL9H\ thHLBHHH9t3HtHHHPHHStH=uHBHH9uIM}L)HH\MuM9t!fDI~HtIM9uM}MtLImI]MeH[]A\A]A^A_DHIh@I}L9fDIMHI9fDHH9HuE11&H=HH=HH5Hvirtual std::shared_ptr path_extend::CompositeConnectionConstructorCaller::GetScaffoldGraphConstuctor(const path_extend::ScaffolderParams&, const ScaffoldGraph&) conststatic const Config& config_common::config::get() [with Config = debruijn_graph::config::debruijn_config]debruijn_graph::EdgeId path_extend::scaffold_graph::EdgeGetter::GetEdgeFromScaffoldVertex(const path_extend::scaffold_graph::ScaffoldVertex&)virtual barcode_index::SimpleVertexEntry barcode_index::BarcodeIndexInfoExtractorWrapper::GetHeadEntry(const ScaffoldVertex&)bool restricted::pure_pointer::operator==(const restricted::pure_pointer&) const 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>, std::allocator > >, 256> >; Reference = const restricted::pure_pointer >&; Pointer = const restricted::pure_pointer >*]btree::safe_btree_iterator::reference btree::safe_btree_iterator::operator*() const [with Tree = const btree::safe_btree >, std::less > >, std::allocator > >, 256> >; Iterator = btree::btree_iterator >, std::less > >, std::allocator > >, 256> >, const restricted::pure_pointer >&, const restricted::pure_pointer >*>; btree::safe_btree_iterator::reference = const restricted::pure_pointer >&]const Block& boost::dynamic_bitset::m_highest_block() const [with Block = long unsigned int; Allocator = std::allocator]boost::dynamic_bitset::~dynamic_bitset() [with Block = long unsigned int; Allocator = std::allocator]bool restricted::pure_pointer::operator==(const restricted::pure_pointer&) const [with T = omnigraph::PairedEdge]static const Config& config_common::config::get() [with Config = 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HHHPH@HHHHHDHHHPH@HHHHCxHH9AVLwAUIATIL9USLuRHL)uPHA,$I9t:+A:,$|SHC@8|CHȈPPHH@8|@(HI9u[]A\A]A^LLfDH@(basic_string::_M_construct null not valid/srv/scratch/marinovg/spades-cloudspades-paper/assembler/src/common/assembly_graph/core/order_and_law.hpp/srv/scratch/marinovg/spades-cloudspades-paper/assembler/src/common/assembly_graph/paths/bidirectional_path.hpp/srv/scratch/marinovg/spades-cloudspades-paper/assembler/src/common/modules/path_extend/read_cloud_path_extend/scaffold_graph_gap_closer/cloud_scaffold_graph_gap_closer.cpppaired_lib_index.is_initialized()UHSHoHHHGHHHHtHP HHHCHH8[]HSHHHHGHHtHP HHHH߾8[SHHXHHHC8H{HHHHHCtHP HHH[UHSHoHHHG(HHGHHHHtHP HHHCH[]f.HSHHG8HHHHGHHtHP HHH[UHSHoHHHG(HHGHHHHtHP HHHCHH@[]@f.SHHXHHHC8H{HHHHHCtHP HHHH߾@[fDHSHHG8HHHHGHHtHP HHHH߾@[=== Stack Trace ===AWAVH5AUATH=USHXdH%(H$H1HHH@HHr{87sCH=HHHHÉIHōCL%L=Ml*DsCH=HHL9H]HtbHH=HHI$H@IH{8uHH H@0L9tHwI$HxLw LH$HdH3%(uKHX[]A\A]A^A_HHH H@0H9Hptr_.get() == rhs.ptr_.get()gap_len_[0].gap == 0basic_string::append/Unique check enabled: Getting edge mapGot edge mapVerification of expression 'false' failed in function ''. In file '' on line . Message ''./srv/scratch/marinovg/spades-cloudspades-paper/assembler/src/common/barcode_index/scaffold_vertex_index.hppHead entry extractor from BarcodeIndexInfoExtractorWrapper is currently not supportedATUSHH\$ dH%(H$1HH{H5H{H5H{H5H{H5}H{H5 H{H5kH{H5 H{H5 HHH5UHH5HHHsHHT$H4$H=HH<$HEH9tHsHHT$H4$H=HH<$HH9tH=H=H H5H=HHHH<$HIH9tL'+0  ATUISHHH^dH%(HD$1HHHHP(H$HtHHPH<$HtHP ID$H}HEAD$ HE ID$HEtHP HH]tHHPHHP HD$dH3%(u3H[]A\HFHGF G HFHGHHtHP HHH<$HHtHP HHP HHHu 4F~ATUHS@L%HHHHHC8H}HL#HCHH{tHPHE HuH{HC HE(HC(E0C0HHH8HCH8HC8HHXH[]A\HHL#H߾@HHHfATUL%SHHxH@HHHHHC8H}HL#HCHH{tHPHE HuH{HC HE(HC(E0C0HHH8HCH8HC8HHXH[]A\HHL#H߾@HHHOV1HG@H9G :AUATUSHH;GHHWJL`LhHLLL!HH HH+BM9LHcJHHHLKHHGxf.H)HH9H9uH9HHM9HVILH}@H;}HHH}@HH;t%fDH;HLLHHPH9uH[]A\A]fDIIH]DfDHHRHfHGXH@LLDHEXHPH@HUXHHEHHHE@HUP'DHHLLHPH@HHHHM9HHLHHPH@HHHHHHpHHHFHHGtH=u @D@HHHFHHGtH=u @D@Hu`(@` UIHHHATSIHL`Lht#)p)M)U)])e)m)u)}dH%(H81HFH HDž Dž$0H)HEH\$H(H@HHH0AIT$LHI$HcHH8dH3<%(Lu He[A\]ATUSHoHH9t&IDH;HCH9tH 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I$0H9tI$I$H9tI$I$H9tI$I$I$H9LL)IHILHI!IMiIHhHxH9tHHHXH9tH(H8H9tHHH9tHHL}XH]PI9tH;HCH9tH I9uH]PHtHL}@H]8I9t&H;HCH9tH I9uH]8HtHL}(H] I9t&H;HCH9tH I9uH] HtHL}H]I9t&H;HCH9tH I9uH]HtHM9Lt IƘI$HtHA$xI$ I$ I$ I$ H9tI$ I$ H9tI$` I$p H9tI$@ I$P H9tI$ I$0 H9tI$ I$ H9tI$ I$ H9tI$ I$ H9tI$x I$ H9tI$X I$h H9tI$P I$` H9tI$0 I$@ H9tI$ I$ H9tA$tI$I$H9tI$I$H9tI$I$H9tI$hI$xH9tI$@I$PH9tI$ I$0H9tI$I$H9tI$I$H9tI$I$H9tI$I$H9tI$I$H9tI$`I$pH9tI$@I$PH9tA$I$xI$H9tI$XI$hH9tI$I$H9tI$xI$H9tI$I$(H9tI|$xI$H9tI|$8ID$HH9tI|$I(L9tH[]A\A]A^A_H[]A\A]A^A_fI$I$(H9tI$I$H9tI$I$H9tI$I$(H9tI$I$H9tI$I$(H9tI$I$H9tI$I$H9H>I$I$I$I$H96,H=SHtot+[fGPWuHPC PS HPC uHH[H@HHHHt HHHHGH Ht DHSHHHHGH HtH߾H[HSHHHHtH߾([HHHHt HSHHHHtH߾ [HHHHt HSHHHHtH߾ [HSHHGH@HtH{(Ht [@[HHHHt HSHHHHtH߾[/srv/scratch/marinovg/spades-cloudspades-paper/assembler/src/common/modules/path_extend/scaffolder2015/scaffold_vertex.hppvertex.GetType() == EdgeUSHHH8dH%(HD$(1HH|$HH\$Hl$HtH=uQCHHHtHH$HT$H$HT$HL$(dH3 %(uOH8[]CH|$HtWH H5H=HHtHH*nFHSHHGH8HtH{(Ht [@[HHGH(Ht HHGH Ht HSHH0HGH{(Ht[f[H HtfHSHHHXHtH{HHtH{ HHHtH{HtH߾`[HSHHHXHtH{HHtH{ HHHtH{Ht [[HSHHHhHtH{XHtH{HHtH{ HHHtH{Ht[[HSHHHhHtH{XHtH{HHtH{ HHHtH{HtH߾[ATIUSH?HtAID$HI\$(HhH9vfDH;HH9wI<$[]A\f.[]A\ATIUSH?HtAID$HI\$(HhH9vfDH;HH9wI<$[]A\f.[]A\HATUHSHHHtHHt7HHL`I9vH;HI9wHH}h[H}]A\HATUHSHHHtHHt7HHL`I9vH;HI9wHH}hH}[H0]A\LHH~LNLFLH)HHHx\HH~2MHH)I8HL@LHHxHLHfDHHxLHI L@HHHHAWAVIAUATUSHXHRXI+V8dH%(HD$H1IF@I+FHHt$HHHHHHIF0I+F HOXH+O8HHHW@H+WHHL HHHHH HW0H+W HHI9HHG Hl$ 1IHD$IF HD$DHt$HHHD$ Ht$HLhL8HD$HHT$ L;jHL!M!L9t)H H5H=DIVXI+V8HIF@I+FHHHHHHHIF0I+F HHH9EfD1H\$HdH3%(uHX[]A\A]A^A_AWAVAUATUSHxH7dH%(HD$h1HFXH+F8HV@H+VHHHHHHHV0H+V HH1Hw%H|$hdH3<%(Hx[]A\A]A^A_fHl$@HH HHH3HD$@HL HFXH H+FHHHHHF H+F(HHHVH+HHTHD$@L0LxHMI!I#EHHu HHHt 11fDIE8HI!H!HH!HAHIHD$(HL$ IL$I4$H9Ht$HL$uHt$ H|$HT$tID$8HT$H!H#HBHRHD$HHT$@IUIMH9HL$0HT$8ZH|$0HEH;LLjHPH+HHPath Length Weight , ()[], final: #, edge (length), gap info, total length, total length from startAWAVAUATUSHdH %(H$1HO@H9O Ht$IH5HLH LH5HH5L1HC H9C@t HHL|$LH5HH5LfLZ(H5HH5ALH5LHCXH+C8HHHHHC@H+CHHHHS0H+S HHHC 1HD$ HD$@HD$0H$H$H$HD$(HD$`HD$HD$pHD$8fDHHHHHH)HHD8DhH5D`@ LD$DLH5HIDLH5HIDLH5 HIt$LH5HIHKxHH+HHH2HH?HHHH)HHH0LH5HIHC H9C@HHKxHHH+HHHHH?IH4IIM)J4H;"HC H9C@HHKxHHH+HHHHbHH?fHHH)H HH+HLH5HH|$`H;|$8tHSXH+S8HHC@H+CHHHHHHHHC0H+C HHH9H|$HH5HIHt$ H|$0HL{HD$@H<$LpL H|$(LH5HIHLI!It$ I+wH5HL<$H|$IwLHT$hHt$`LH5HIHHH+HHHxHHHwH$dH3%(H[]A\A]A^A_1;f1vfHHH0HH4HHHaHHH1HHHHHHH<$HHHT$H|$`HHH9tH"L L`  (/srv/scratch/marinovg/spades-cloudspades-paper/assembler/src/common/modules/path_extend/path_extender.hpppath.Size() > 1 General loop with start e1 e2 out cov in = cov out cov cov e1 = cov e2 = fwd_count = back_count = result = AWAVMAUATIUSLHH(LNXH~@dH%(H$1LFHHL$(LH+F8HL)HHHHHHV0H+V HHHI9HGLgH|$PHH HD$8HL$PHfHAH9HD$0IEH!H#W8HH0HqHH@BHR H)H9H*HGH fH*^IL!ËCL$ fH*HC H)H9HGHfH*^HI!IEHHPAD$D$ -XL$@YD$fH*ID$ H)fH*^D~%5^D$f(=XAXf(D$fTf.fHfH!ŋEH*HE H)xfH*^f(^T$XAXf(T$f(fTf.L$1\$\\$P]f.vKf(XAXf(f(fTf.  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H9t[Lx]A\HATUHSHHHtHHtHH;HHEt^E1LHHH;HtHP(H{HHtHP(HHIHCH)HL9wHHtH]PHHE0Ht2LcMtIt$L0LHHuHH}xH}PHt@HHHuHEHH}@1HH}@HEpHEXHEPH9tH}(Ht[H]A\HATUHSHHHHtH8HtHHHEHtHHtHH;HHEtYE1fLHHH;HtHP(H{HHtHP(HHIHCH)HL9wHHtH]PHHE0Ht2LcMtIt$L0LHHuHH}xH}PHt@HHHuHEHH}@1HH}@HEpHEXHEPH9tH}(Ht[HX]A\HATUHSHHH;t[E1@LHHH;HtHP(H{HHtHP(HHIHCH)HL9wHHtH]PHHE0Ht2LcMtIt$L0LHHuHH}xH}PHt@HHHuHEHH}@1HH}@HEpHEXHEPH9tH}(Ht[H]A\HATUHSHHH;t[E1@LHHH;HtHP(H{HHtHP(HHIHCH)HL9wHHtH]PHHE0Ht2LcMtIt$L0LHHuHH}xH}PHt@HHHuHEHH}@1HH}@HEpHEXHEPH9tH}(Ht[]A\D[]A\HATUHSHHHHtH8HtHHHEHtHHtHH;HHEtYE1fLHHH;HtHP(H{HHtHP(HHIHCH)HL9wHHtH]PHHE0Ht2LcMtIt$L0LHHuHH}xH}PHt@HHHuHEHH}@1HH}@HEpHEXHEPH9tH}(Ht[]A\D[]A\HATUHSHHHtHHtHH;HHEt^E1LHHH;HtHP(H{HHtHP(HHIHCH)HL9wHHtH]PHHE0Ht2LcMtIt$L0LHHuHH}xH}PHt@HHHuHEHH}@1HH}@HEpHEXHEPH9tH}(Ht[]A\D[]A\HGHUSHoHHH DH@HtHP H9 rHPvHHHuH1[]HpHu-DHHvHtH~ H; rHvHufDHtHr H; w6HHRHuH9t1HHH9uHH[]DHR1Ht3ATIUSHHsLHkHHHu[]A\@HtCATIUSHHsLHs@HkH{0HHHu[]A\HSHHHHtHHtHHHH{pH{XHtH߾[HSHHHHtHHtHHHH{pH{XHt [fD[Ht3ATIUSHHsLHkHHHu[]A\@ScaffoldingUniqueEdgeStoragestorage created, empty/srv/scratch/marinovg/spades-cloudspades-paper/assembler/src/common/assembly_graph/graph_support/scaff_supplementary.hppAUATUSHHGHGdH%(H$1HGHG(HG0HGHG H8HHtHu-H$dH3%(Hĸ[]A\A]Ld$ LI|$H5LmIt$HHL $LHLH<$HH9tLYHLHsHHH<$HIH9tLHNdAWAVAUATIUSHHHH9/LkxHL=L)HHHH!HHHH)HHD$@HH H@ H9Hk L;Ht0DLuMtIvL0LHmHuHsXH{HH{ HtH/HHuHCH{1H@HH{HCHCH9tL9l$LtIx4@HLL9l$uI$HtHI$M$L9IoH)HMlI?I;tTE1@LHHH;HtHP(H{HHtHP(I?IGIHCH)HL9wHItL9It HM$MtLI$I$It$pI|$`ID$PI|$HH9tZH_8Hm۶m۶ H)HHHH!HHH)H, DH8HwH9HuI|$HHtIt$ HI|$[]A\A]A^A_HHHH!H9thH6HHH!H9thHHHH HHHHHH HHHHHH)HH)H9HHGH@H1HtDH1HtUSHHH(BdH%(HD$1fH~HfH~NH!H9fH~HfH~H!H9 HHHH HHHHHH HHHHHH)HH)H9HHGHHt$H|$L$D$tNHEHHSHuHuzHHH HHHHH HH)H9HwH1H\$dH3%(u{H([]HHf.ȸQ@H9HHf.ȸ!@HHH)mHH1AWAVHAUATIUSIHHMD$H?LI)H)HHH H IH9LHT$I<$MD$HXHT$IIMtoHBAEIEH9tIHGHHLH)HHIDHHtoHJHKHKHH9uH0L9t 0 && num_blocks() > 0m_check_invariants()HAUATIUSIHHHsLHSHHkHу?H{0HC8Hs@H)HH)HH9wHHHH9t$H H5H=yDHtHHHjH[]A\A]H{0HC8LHH9tHpcfH 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L9HDŽ$(JDHLHI9uH$HD$HLxL9twHHSHHHH@HtH9P(sH@HuH9t3H;Q(r-HD$hH;D$pHtoHSHPHHD$hHI9uLH$HtH|$XHtH|$`L|$hI9Ht"fHLHI9uH|$`HtIL9t$NHD$HL`I9ImDH$Ht9HSHf.HH@HtH9P(sH@HuH9tH;Q(s4HD$HpH;pHtoHCHFHD$HHpHI9yH$H|$HH$LH$8dH3<%(HD$HH[]A\A]A^A_HI9H|$@HHH$V11H|$HP1^HH$H|$HH$LHD$H8HtHHH|$`HtH$LHH$HtH|$XHtH)     AWAVAUATUSHHHHuH?IHI)H)HHH IH9LHT$H}HuLxHT$IIMt oAEH9t8LHHtoHHH9uHGHH)HHM| H9t5HLfDHtoHHH9uHH)HM|HtLeL}LuH[]A\A]A^A_f.HIHH9HuAE1E1 HGH;GtHtoHHGÐHHAWAVIAUATUSH(HBXHHL$8HJ8Ht$0H|$pdH4%(H$1H)Hr DL$`HHGHGHHHIF@I+FHHHIV0H)HD:HHD$HD$HH$HzHD$PH$H|$@HD$XDI~xH\$HH+\$HD$0HI+L`H\$HHHjHH?<IIIL)HHЋT$`HI+F(H\$HHHHHHHH)HHHH#t$8HID$@$M$Ht$ Hv H@IHH!I)Hq HL$(HH)I$HD$I$HtRLHf.rL;j(wHHRHtH;Z vHRHuI9tH;Y rL;i(fHD$XH$H|$DŽ$HDŽ$HHDŽ$H$H$H$HEL$DŽ$HDŽ$H$H$HDŽ$H$H}H$H|$PI$HLrL;h(wHH@HtH;X vH@HuI9tH;] rwyL;m(ssf.`HX H\$ILh(@8H@8H@IW HIGHIGPHIGXHHLHHHHU@Lm8$Ht3LHHH@Ht9X }H@HuI9t 9Y #HD$ Hp ID$@H@IHD$(Hx DŽ$AD$HzID$HM$IL$xIMDLH HHRHtD9B }HRHuD)L)L$t$ DMLl$xt$(H$MLH|$hHD$MՉt$dMA@MLLLDHHRHt;J |HRHuH9H(P EH}Pt$ HL$dffDHAEHD))E\ AɍJGL)A9AND)A))T$(D9AL)щʃH*_YHXD$D$M1LH9XDH$0Ll$xL$Le0d$Hp X LI`(H'LHLHU@H$LHHRHt9Z }HRHuI9t;X }'Le0H$HLH$H$@(HfH~fH~H!H9tLHHH H9HtxHw6HD$HD$H9D$@ Iv IN8@HHtf.vHD$H|$pH$$H$DHHH)vHHH(fHHHHHHHIw@I0LfDH$~t$hf)֍T~D)*H$dH34%(HD$puEH([]A\A]A^A_fDL@L(LH>HHD$pH8HtHH$H}HH$H|$PUHAWAVAUATISIEHXHv(HdH%(HE1HGHGH}HHUHMLEPH]LuL9YHEHEHH?HuIIL)HHHDHEHp EHH+P(HHHHHHHMHHH)HI8HHHHPH0HMjLEAA|$ XZt^CHHuLEHEHI9t}I|$H HLP HEHpxHH+HHH HHH DHHHHTfHHH"LuMtLH]dH3%(LuHe[A\A]A^A_]H}HHtI}HtHHW*SHLIHHH0HdH<%(H|$(1H|$H|$LT$L9LKfLCHDMt9HLLHH@HtH9P sH@HuI9tH;Q sXFHI9uHtD$D$HD$(dH3%(u H0[fUSHH_HtQL@HCAHtHHK I9rHCE1HuEIu1HI9HGIGH[]fH_1H9_HtHHILEHH HAWAVAUATIUSH(GHGdH%(HD$1HGHG(HGHG HH$Lt$I9HII fHI9tgCfH~fH~H!H9HxL L9J tvHvff.vHLHtHHLHI9u@H$HtHHL$dH3 %(Lu@H([]A\A]A^A_DHLH)DLcff.1qHIuLHH<$HHtGAWAVHAUATIUSIHHMD$H?LI)H)HHH H IH9LHT$I<$MD$HXHT$IIMtoHBAEIEH9tIHGHHLH)HHIDHHtoHJHKHKHH9uH0L9t posresult pos last_edge_pos > -1(int) path.Size() == last_edge_posAWAVAUATUSHHHdH%(H$1AH8HtHIEAHEXH+E8HHHHHE@H+EHHHHU0H+U HDdEHMxIcLLHH+L1HH:HH)CfDHHH?~CHIHHH)HL9s?AHHACHyHHH뾐HLH)HL9rH8HHtHE9HEXH+E8Et$H]@H+]HHHHHHH]0H+] HHÉ؃D9|JfDHD9uHEXH+E8HHHHHE@H+EHHHHU0H+U HA9H8HHtHuVH$dH3 %(DlHĸ[]A\A]A^A_fH H5H=@Lt$ LI~H5 I~DIIvHLL $LHHH<$IL9tL"HUXH+U8HE@H+EHHHHHHHHE0H+E HHA9H H5H=DH H5H=@Lt$ LI~H5I~DIIvM$$LL $LHLH<$IL9tL2Lt$ LI~H5I~DIIvHLL $LHHH<$IL9tLHLHH<$IHL9t9*#  $  #  LoopDetectingPathExtenderAdding edge. PathId: path length: , fixed gap : , trash length: -AWAVIAUATMUSHHHLdH%(H$1IE0Hx(HHHpHHH HH@HtH9X(sH@HuH9tJH9Z(wDIEI}Ht7HHH@HtH9X(sH@HuH9t H9Z(L4$H\$HHHIHtH9Y(sHIHuH9tXH9X(wRHLL|$HH#$LLHP@H@8HT$HD$HtLHL@HLLHH8IHtHu8H$dH34%(lH[]A\A]A^A_1@Lt$@LI~H5H I~H5HIHE H9E@HHpLH5HHA4$HH5HHAt$HH5HHAt$HHl$ IvMeHLL$ LHLH|$ HH9tLH$H\$JHH|$ HHH9tLHHSimpleExtenderloop detecorpushAWAVAUATUSHdH%(H$1HAH+Ht/1H$dH3 %(H[]A\A]A^A_@IHHH8IHtHA$u5HE@H9EH%HPHpHtqI$Hx_H8IHtHHCIHLHPHH@HD$D$ $fHCHHpHPsfLt$0LI~H5M}Ll$IvLLL$LHLH|$IL9tL@HEXH@HDLt$0LI~H5M}Ll$IvLLL$LHLH|$IL9tLH|$IHL9tLHH'iHGH;GtHHtHHHHWÐATUHSLg(HL;'tUID$HC(HPH@HS(HHCHS HHHSt HUH[]A\Lc(gap_len_[0] == Gap()AWAVIAUATUSHHE(ExdH%(HD$81A@$A@ D$HH!HG H;G(Hn8Lf@}HHtHhL`IV IIH\$IIH)HHHHII+HHIH)HHIHH)HD$HHHH~$HPHHIHHHH)HHHD Eu DAEH\$I1HHD$0HPx I1HHD$4$Ipt$D(Dx@p IH9HHtAAAAIIVHINxH!I~hH@ H+BI9Ht IcHHHHD$$Dl$MM;D|$D$D$D$t%I}ILHLIHM9uHD$8dH3%(HH[]A\A]A^A_HHHHWfDypy kafDH_8H;_HCIF8HPH@IV8HIF(IV0HHIV IHL6fDII;HT$HT$HBIHPH@IHIIHHI;HǀǀƀHI^8IIGH H5H=#AWAVAUATUSHHL$MtnI$IIIHLC HHtPL@ 1IHLHuI9u8M9uHCI9GuHsLtHL[]A\A]A^A_E1HHN1HHwIHLHtHHt H1HError erasing path from coverage map/srv/scratch/marinovg/spades-cloudspades-paper/assembler/src/common/modules/path_extend/pe_utils.hppATUHSHHt$Ht$HT$dH%(H$1HL$HHXHt$HHHCHsH!HT$HH  HH@HtHP H9 sH@HuH9tHG H; HBHHk(H$dH3%(H[]A\DH8HHtHtHl$@HH}H5L#H\$ HuHLL$ LH>LH|$ HH9tH8HH|$ HIH9tHLI6AUATUSHHHHHIH9L,LL1HILU0HMHEHt[E1LMfHHHHHHtID$H I$HBH9I $HJIL$HJHHBBIL$IH9HJ HHBH)IH|:0HI7fH HHJHHHJH@H@H H H9t"HtHJH HHH9uoBLHLl@IVH9~HN HFH)HHt20LH1H HHJHHH@H@HJH H H9t"HtHJH HHH9uoBHGM~HIM&M9t I<$ID$H9tI M9uM>MtLIMnInH[]A\A]A^A_f.HHoBAD$LHH9HuA 11AWAVAUATIUSIHHHHnL$HL$dH%(H$81LHAD$LLLt$$$L$H$PHHD$8I$LHDŽ$$hH$HHD$(IL$$hLLLd$0$$L$@LL$$LE1䉄$X1H$PvH$@HtH$vH$HtHEHDH$H$vH$HtH$`vH$PHtH$vH$HtH9H$H$H$H$Ƅ$ H$HtSH$HHHH $HyPHH$H$H9u-H9u(H9$uƄ$ DH$HH$H$H$H$H$H$HHD$ HH$HtuHHHtH{HH$vH$HtH$H|$HDŽ$HDŽ$HDŽ$HDŽ$HHDŽ$Ƅ$ H$HtuHHHtH{HHl$(Ht$HH\$8Ht$ HHLHD$pHD$xHDŽ$Hl$0HHH<$LH$HHH\$@HD$hH$IoHD$HD$pHD$HHCHD$VfHH|$QHH$H$H$H9u H9cH$H$H$HL$M$I$ ;L$H$L)uH$H$H)H9pHH$H\$hHA$$HH$Ht$xH;$HH$tRHFHH$H9HH$HFH$HHFH$HDŽ$Ƅ$H Ht$xH9tH$H$H$HnHHH;$Ƅ$DL$H$L)Mt.$ tAuIIHtH<$HHH$Ht#uHHHtH|$0HHH$@HtuHHHtI~HH$PHt#uHHHtH|$8HHH$Ht#uHHHtH|$(HHHT$pIEH|$pIUHT$xHD$pIEIUH$HD$xIEIUH$H$Ht#uHHHtH|$HHH$Ht#uHHHtH|$ HHH$8dH3 %(L]HH[]A\A]A^A_Ht$1LHT$hH$H$HLHH\$hH$@fo$F9fDH|$HLH$MfDHHLLD$XHL$PjH$H9$HL$PLD$XJH$H9$4jHHHUfDH)HMI H$H$H$H9$H$HD$h@H$LHHD$@$X $Ht$@HIH$$L$AD$vH$HtAo@HHHH|$@HHL$H$H9$HH$Ht"uHHHtH<$HHH$Ht#uHHHtH|$ HHHHH$HtuHHHtH|$HHHH$HtuHHHtH|$(HHHH|$pHtH$PHtuHHHtH|$8HHHH$@HtuHHHtI~HHH$HtèuHHHtH|$0HHHH$HtuHHHtH<$HHHLd$pH\$xLH9tH}HEH9tH Ld$xHH$vH$HtH$PvH$@HtH$vH$HtH$vH$HtH$`vH$PHtH$vH$HtH$H$HHHH$HtuHHHtH<$HH띾 LHHH$HQIHHH9H|$@HH!HH$H+#HHHH<$HHH$IHL9tHHBHWHlHHJfAUHGATUSHIHH9tL*L;n Hs;HGH9Ht#HL;h HvjHxHEHEH[]A\A]ÐvfHO 1H9HtHL;h Hs+H{HEHDH(t H_ HH9C r4HLH[]A\A]HH1[]A\A]HH1[]A\A]AWAVIAUATUSHhH_Ll$ dH%(HD$X1LHD$ HCLHT$(H$HD$HD$HxH{LL`8HHhHH\$I9tXI(HtHE HHHH\$I9Ht+H;\$uHU HLHH\$I9HuIEH,$MwMgD$(HD$0HD$8IHD$@HD$HM9tH9tID$ H9EsTHM9uHt$0LH\$HH<$HtHL$XdH3 %(HuoHh[]A\A]A^A_fvLI눐LHLHHuHI@HHLHHIH<$HHtHHt$0LHH<$Hu-ajAVAUIATUISH@HnHH\$ dH%(HD$81HEHLhHLHD$HT$HH$HT$HHHL$AH\$ HT$(ID$AD$ID$ID$ID$ H)ID$(HHH~;LHHHHtHHLHHHuH\$ HtHHL$8dH3 %(Lu H@[]A\A]A^It$LHH|$ HtH94AWLAVAUATLiUSLrIHHGLL HiHZGHG(I9tI9tHE H9C s(HI9HuHL[]A\A]A^A_fDvHH뵐HK LLHHL$HHuHIH@HL$HLHIt$HLH ReadCloudExtensionChooserCandidate: Score: Max score: /srv/scratch/marinovg/spades-cloudspades-paper/assembler/src/common/modules/path_extend/extension_chooser.hppAWAVAUATUSHHHBL"HL$H|$ dH %(H$81L9Ht$HHGHGHD$($fHD$`H$d$fDHD$LHD$@HD$HHD$PHh@LhxHEHxLpPHELHxHXHL|$@JHC HD$`HSPII9r(H{(t!Ht$HH;t$PcHtHHHt$HHHHELHxH8H9uH$Lt$HH\$@D$hHD$pHDŽ$LxHD$L|$xL$HhLhI9tI9tHE H9HI9uH$HfH*HD$H@(HfH*^D$8H8HHtH1H8HHtH1 D$8HL$HfH~IpHH!H9Ht$HHH!H9XHHIHH HHHHIH HIHII)HH)H9LHGHHD$H9!fH~HHH!H9fHHHH HHHHIHHH HHHHH)HH)H9HHGHvf.wL$L;$LHtoA$oCAD$H H$H H9\$uLL$H$I9H$HD$H$HD$H$`HD$(H$pHD$0fDH I9;H8HHtH1tH|$H|$H5 HsH|$H5 HHD$ H|$ CHD$H|$(HmHpL$`LH1HH$`H;|$0tH|$H$HH{H5LeH$`HsHL$`LHwLH$`HH9tHH$HH{H5LeH$`HsHL$`LHnLH$`HH9tHH$HH{H5H$H+$HH{HHLeH$`HsHL$`LHyLH$`HH9tHH$HH{H5LeH$`HsHL$`LHrLH$`HH9tH!H$LH$LLH$0HtH8HHtHoH$H$IH$HIFH$IFtH$HH H9\$LH+$HHD$ HHH H9HD$HD$H|$H$HL$ HtooCAH$I9HHHtooAFH H I9uHO LH)HHHL I9LA tALLfHtooAFH H H9uI L)HMD HtHD$(LD$ HD$(LD$ H$HD$L$H$@H$BH8HHHH$HH{H5LeH$`HsHL$`LHiLH$`HH9tHSHD$ 0H$HH{H5H$H+$HH{HHLeH$`HsHL$`LHLH$`HH9tH1HH9U1H|$bHHL$BDHIHLH$`HIH9tHLH$HtH$HtH$HtHH$HtH|$`HtHH|$@HtH|$H$HHH$@LH$0HH^^HVH`HH|$lg94HHD$(H$`HH9IHLH$0HHTTIHH$`HIH9tLH HH$`HIH9tHLIHH$`HIH9F) *(,,+,,*+!)C+!(B)))'1'R()+**)+)(H+*)((''!* ("B)#)#($*$H*%&&AWAVAUATUSHHHHuH?IHI)H)HHH IH9LHT$H}HuLxHT$IIMt oAEH9t8LHHtoHHH9uHGHH)HHM| H9t5HLfDHtoHHH9uHH)HM|HtLeL}LuH[]A\A]A^A_f.HIHH9HuAE1E1 Looking for the following edgesPushing backvector::reserveAdding edge w distance Following edges foundAWAVAUATUSHHdH%(H$1H$H8HtHHH<$HD$HD$HD$ HHGH8HHtHHE@H9EHuHEXH@HHxHH!H#HHHu HHHl$L,HD$I9Lt$0L|$HƐIH HSI)H;D$ HL$0HT$8H9Hto@HxHIHI)LH|$HM 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btree::btree_iterator::increment_slow() [with Node = const btree::btree_node >, std::less > >, std::allocator > >, 256> >; Reference = const restricted::pure_pointer >&; Pointer = const restricted::pure_pointer >*]btree::safe_btree_iterator::reference btree::safe_btree_iterator::operator*() const [with Tree = const btree::safe_btree >, std::less > >, std::allocator > >, 256> >; Iterator = btree::btree_iterator >, std::less > >, std::allocator > >, 256> >, const restricted::pure_pointer >&, const restricted::pure_pointer >*>; btree::safe_btree_iterator::reference = const restricted::pure_pointer >&]static const Config& config_common::config::get() [with Config = debruijn_graph::config::debruijn_config]const Block& boost::dynamic_bitset::m_highest_block() const [with Block = long unsigned int; Allocator = std::allocator]boost::dynamic_bitset::~dynamic_bitset() [with Block = long unsigned int; Allocator = std::allocator]barcode_index::BarcodeIndexInfoExtractor::const_intersection_iterator::reference barcode_index::BarcodeIndexInfoExtractor::const_intersection_iterator::operator*() [with barcode_entry_t = barcode_index::FrameEdgeEntry; barcode_index::BarcodeIndexInfoExtractor::const_intersection_iterator::reference = barcode_index::BarcodeIndexInfoExtractor::IntersectionData]debruijn_graph::EdgeId path_extend::scaffold_graph::EdgeGetter::GetEdgeFromScaffoldVertex(const path_extend::scaffold_graph::ScaffoldVertex&)virtual barcode_index::SimpleVertexEntry barcode_index::BarcodeIndexInfoExtractorWrapper::GetHeadEntry(const ScaffoldVertex&)int path_extend::InsertSizeLoopDetector::RemoveCycle(path_extend::BidirectionalPath&) constbool path_extend::InsertSizeLoopDetector::InExistingLoop(const path_extend::BidirectionalPath&)path_extend::BidirectionalPath path_extend::BidirectionalPath::SubPath(size_t, size_t) constvirtual size_t path_extend::CoverageLoopEstimator::EstimateSimpleCycleCount(const path_extend::BidirectionalPath&, path_extend::EdgeId, path_extend::EdgeId) constvirtual size_t path_extend::PairedInfoLoopEstimator::EstimateSimpleCycleCount(const path_extend::BidirectionalPath&, path_extend::EdgeId, path_extend::EdgeId) constvoid path_extend::BidirectionalPath::PushFront(debruijn_graph::EdgeId, path_extend::Gap)void path_extend::BidirectionalPath::PushBack(debruijn_graph::EdgeId, const path_extend::Gap&)bool restricted::pure_pointer::operator==(const restricted::pure_pointer&) const [with T = omnigraph::PairedVertex]size_t path_extend::BidirectionalPath::Length() constvoid btree::btree_iterator::increment_slow() [with Node = const btree::btree_node >, omnigraph::de::StrongWeakPtr > >, std::less > >, std::allocator >, omnigraph::de::StrongWeakPtr > > > >, 256> >; Reference = const std::pair >, omnigraph::de::StrongWeakPtr > > >&; Pointer = const std::pair >, omnigraph::de::StrongWeakPtr > > >*]size_t path_extend::PairedInfoLibraryWithIndex::FindJumpEdges(path_extend::EdgeId, std::set > >&, int, int, size_t) const [with Index = const omnigraph::de::PairedIndex&; size_t = long unsigned int; path_extend::EdgeId = restricted::pure_pointer >]bool restricted::pure_pointer::operator==(const restricted::pure_pointer&) const [with T = omnigraph::PairedEdge]void path_extend::PairedInfoLibraryWithIndex::CountDistances(path_extend::EdgeId, path_extend::EdgeId, std::vector&, std::vector&) const [with Index = const omnigraph::de::PairedIndex&; path_extend::EdgeId = restricted::pure_pointer >]double path_extend::PairedInfoLibraryWithIndex::CountPairedInfo(path_extend::EdgeId, path_extend::EdgeId, int, bool) const [with Index = const omnigraph::de::PairedIndex&; path_extend::EdgeId = restricted::pure_pointer >]btree::safe_btree_iterator::pointer btree::safe_btree_iterator::operator->() const [with Tree = const btree::safe_btree >, omnigraph::de::StrongWeakPtr > >, std::less > >, std::allocator >, omnigraph::de::StrongWeakPtr > > > >, 256> >; Iterator = btree::btree_iterator >, omnigraph::de::StrongWeakPtr > >, std::less > >, std::allocator >, omnigraph::de::StrongWeakPtr > > > >, 256> >, const std::pair >, omnigraph::de::StrongWeakPtr > > >&, const std::pair >, omnigraph::de::StrongWeakPtr > > >*>; btree::safe_btree_iterator::pointer = const std::pair >, omnigraph::de::StrongWeakPtr > > >*]btree::safe_btree_iterator::pointer btree::safe_btree_iterator::operator->() const [with Tree = const btree::safe_btree >, omnigraph::de::NoLockingAdapter >, omnigraph::de::StrongWeakPtr > >, std::less > >, std::allocator >, omnigraph::de::StrongWeakPtr > > > >, 256> >, std::less > >, std::allocator >, omnigraph::de::NoLockingAdapter >, omnigraph::de::StrongWeakPtr > >, std::less > >, std::allocator >, omnigraph::de::StrongWeakPtr > > > >, 256> > > >, 256> >; Iterator = btree::btree_iterator >, omnigraph::de::NoLockingAdapter >, omnigraph::de::StrongWeakPtr > >, std::less > >, std::allocator >, omnigraph::de::StrongWeakPtr > > > >, 256> >, std::less > >, std::allocator >, omnigraph::de::NoLockingAdapter >, omnigraph::de::StrongWeakPtr > >, std::less > >, std::allocator >, omnigraph::de::StrongWeakPtr > > > >, 256> > > >, 256> >, const std::pair >, omnigraph::de::NoLockingAdapter >, omnigraph::de::StrongWeakPtr > >, std::less > >, std::allocator >, omnigraph::de::StrongWeakPtr > > > >, 256> > >&, const std::pair >, omnigraph::de::NoLockingAdapter >, omnigraph::de::StrongWeakPtr > >, std::less > >, std::allocator >, omnigraph::de::StrongWeakPtr > > > >, 256> > >*>; btree::safe_btree_iterator::pointer = const std::pair >, omnigraph::de::NoLockingAdapter >, omnigraph::de::StrongWeakPtr > >, std::less > >, std::allocator >, omnigraph::de::StrongWeakPtr > > > >, 256> > >*]double path_extend::PairedInfoLibraryWithIndex::CountPairedInfo(path_extend::EdgeId, path_extend::EdgeId, int, int) const [with Index = const omnigraph::de::PairedIndex&; path_extend::EdgeId = restricted::pure_pointer 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In file '' on line . Message 'Config not initialized'./srv/scratch/marinovg/spades-cloudspades-paper/assembler/src/common/pipeline/config_singl.hppATUSHdH%(H$1=H\$ HH{H5H{H5H{H5H{H5qH{H5 H{H5]H{H5 H{!H5 HHH5HH5HHHsHHT$H4$H=HH<$HEH9tHsHHT$H4$H=HH<$HH9tH=H==Ht-H$dH3 %(HHİ[]A\H=tHHHH=HH HHH@HHHHH`HHHHHXHH HHHHH HHH HH HHHHHH HH HH HHH HH HHH(HH HHH HHhHHH HHHHHHHH HHHHH HH HHH(HH HHH@HH HHH HH HHHPHHHHHHHHHHHHH HHH@HHHHHHHHHHHHHHHHH HHHHHHH5H=FH H5H=!H<$HIH9tLHHH'8=  AVAUATUSHGHH9Lc(IL)HLl(kM9LtmI(HkHtH=tvmH[HtH=uCPSuHHPC PS uHHPM9LufIHH[]A\A]A^@EPUuHEHPE PU kHEHP\HHPC HHPlfDHEHPE f.[]A\A]A^AUATIUSHH_Hu%}DmHLMt]HkL#HtH=uϋEPUuHEHPE PU uHEHPHLMuIEI}1I0HI}IEIEL9tDH[]A\A]DHEHPE .HEHPu@H[]A\A]ATIUSH?HtAID$HI\$(HhH9vfDH;HH9wI<$[]A\f.[]A\ATIUSH?HtAID$HI\$(HhH9vfDH;HH9wI<$[]A\f.[]A\HATUHSHHHtHHt7HHL`I9vH;HI9wHH}h[H}]A\ General Made grow stepMaking grow stepScoreFunctionGapCloserProcessed tips out of TipFinderGapCloser in tips out tipsSearching for tipFound tip gaps traversed gaps closedScore function gap closerFilling entriesForward entry size: Backward entry size: No barcodes in connection: tip connectionsPath: Printed tip graph/srv/scratch/marinovg/spades-cloudspades-paper/assembler/src/common/modules/path_extend/read_cloud_path_extend/scaffold_graph_gap_closer/scaffold_graph_gap_closer.cpp-@_!(v'` D[9?Q?Q!H'x   !   &&//**k?Q%#1!/2//0 / 0 0 22 1 3/211=32Q2"////0!/!!0"1"/":0#3$/$+1$1%2%.3&3&/&12'2'2(+2(2)/)+3*3*%/*/+#/+.,/,.,-.HATUHSHHHtHHt7HHL`I9vH;HI9wHH}hH}[H0]A\AWAVIAUATIUSHHHOHHI)H)HHH4IH9LH$H]HMMH$III)MtHII9t LHLHL$L$HL$L$IODM)L9tLLLIMHtHLmLuL}H[]A\A]A^A_L<FfDHH9-HuME1E1>HGH;GtHHtHHHHWÐAWAVAUATUSHHHLg(L9't[ID$HC(HPH@HS(HHCHS HHHSt HUHH[]A\A]A^A_HWHHL)HLhLpHGKL-H9vtL)IHMlHBHL)M9I9LLMI$Lc(HCHHC KD4HCHHHC8HHC@Ht~L|HI9J<HLHs(L)HLdHCHHPH9tH)LHL$HL$H;HL$IHL$L{H EAI9tLLMH)LM/srv/scratch/marinovg/spades-cloudspades-paper/assembler/src/common/assembly_graph/paths/bidirectional_path.hppgap_len_[0] == Gap()AWAVIAUATUSHHE(ExdH%(HD$81A@$A@ D$HH!HG H;G(H^8Lf@HHtHXL`IV IIIIH)HHHHII+HHIH)HHBHH)IIHLHI~$MPMMIIMIM)INME Eu EBEIIIHH)HHHHI~'LPHLIIMIIM)MINEEEPEEHEAx HsHI~$HPHHIHIIL)HHI$E(ExA@D$A@ H9HHtAAAAIIVHINxH!I~hH@ H+BI9Ht IcHHHl$ HD$ H$Dl$ MM9D|$$D$(D$D$,t#I}ILHLIHM9uHD$8dH3%(HH[]A\A]A^A_MIIIfDAj Az (@Ho8H9o HEIF8HPH@IV8HIF(IV0HHIV HLfDII9BHEIHPH@IHIIHHIBHǀǀƀ!IIIIAfDHHHHHwXHH)HHPHHHGH<HL$H94H)HHHHLDH)L9H9HLHL$HL$HHEIn8IF(HIF0HD IFXHIFHHIFPPIHH)HHPHHIH<HL$H97H)HHHHLDH)L9H9HHLHL$HL$HHEIIHIHD IHIHIHHDHHD$HH9Hl$HT$H<HT$IHIv8H)HIlIFXHH9tH)HLD$HLD$I~LD$LD$HD$HL$MFIFHbHHDHHD$HH9GHl$HT$H<HT$IHIH)HIlIHH9tH)HLD$HLD$ILD$LD$HD$HL$MIHPHD$_H9tmHHHL$H)LD$LLD$HL$LH9tCHHHL$H)LD$LLD$HL$L4HD$@LLH H5H=#H=SHtot+[fGPWuHPC PS HPC uHH[H@SHHHtH{Ht [[HAUATIUSHHHsLHk(LcHtH=t$mt]HLMuH[]A\A]fEPUuHEHPE PU uHEHPfDfDHEHPE Ht3ATIUSHHsLHkHHHu[]A\@HtKATIUSHHsLH{ HC0HkH9tHHHu[]A\f.Ht[ATIUSHHsLH{PHC`HkH9tH{0HC@H9tHHHu[]A\AWAVAUATIUSHHHHwI$ I$0H9tI$I$H9tI$I$H9tI$I$H9t&@H;HCH9tH H9uI$HtHI$I$H9LL)IHILHI!IMiIfDHhHxH9tHHHXH9tH(H8H9tHHH9tHHL}XH]PI9tH;HCH9tH I9uH]PHtHL}@H]8I9t&H;HCH9tH I9uH]8HtHL}(H] I9t&H;HCH9tH I9uH] HtHL}H]I9t&H;HCH9tH I9uH]HtHM9Lt IƘI$HtHA$xI$ I$ I$ I$ H9tI$ I$ H9tI$` I$p H9tI$@ I$P H9tI$ I$0 H9tI$ I$ H9tI$ I$ H9tI$ I$ H9tI$x I$ H9tI$X I$h H9tI$P I$` H9tI$0 I$@ H9tI$ I$ H9tA$tI$I$H9tI$I$H9tI$I$H9tI$hI$xH9tI$@I$PH9tI$ I$0H9tI$I$H9tI$I$H9tI$I$H9tI$I$H9tI$I$H9tI$`I$pH9tI$@I$PH9tA$I$xI$H9tI$XI$hH9tI$I$H9tI$xI$H9tI$I$(H9tI|$xI$H9tI|$8ID$HH9tI|$I(L9tH[]A\A]A^A_H[]A\A]A^A_fI$I$(H9tI$I$H9tI$I$H9tI$I$(H9tI$I$H9tI$I$(H9tI$I$H9tI$I$H9H>I$I$I$I$H96,Ht3ATIUSHHsLHkHHHu[]A\@SHw HHH{Ht[[AUATIUSHH_Hu%DmHLMteHs(H{L#HkHtH=u‹EPUuHEHPE PU uHEHPHLMufIEI}1I0HI}IEIEL9tDH[]A\A]DHEHPE &HEHPz@H[]A\A]AUATIUSHH_Hu%ymHLMtVHkL#HtH=uϋEPUuHEHPE PU uHEHPHLMuIEI}1HIEIEH[]A\A]DHEHPE FHEHPAUATE1USHHH?H^HtH HsHxHIHC1HMLeID$HuHEH HHuEH[]A\A]f.@I $HC1HAHuHEHH8tKHIHt HHHCHAHCHHAtH=u@L HHtHt$Ht$ILmHE0Lm0HHMtH}H0H9tHHUSHXHdH%(HD$1oEHHH@Hx@HEHuHC(HoE0HC HE(C8HCHH<$HC0HL$dH3 %(HuH[]HHHHAWAVAUATLoUSIHHH_Huf.HSHtHL{ HLuHSHuI9\$t9HILx HHLuHH1[]A\A]A^A_@IM9Aub0Hx HHLLHDID$(HHغ[]A\A]A^A_IyLXIv HDAWAVIAUATIUSIHHHHGH)I)HHH HH9HHT$HT$IHI^H$LLtHI}L9LHfFHHI9t3HtHrHHHHqtH=uHFHI9uIuHLH)HL9I\ thHLAHHH9t3HtHJHHHHKtH=uHAHH9uIImL)HH\MeI9up@AoIL9tSM|$MtH=uAGPAWuILPAG PAW uIILPL9u@ImHtHH$MuI]IEH[]A\A]A^A_ùHH7ILPAG fHH9HuH$E1 IuHI9_AUATLoUSHMHH_HuQIH[HtH{ HtH[HuM9t&It$ HuHL[]A\A]HL[]A\A]AUATE1USHHH?H^Ht8H{IHCP1HMID$PLeID$PHuHEH HHu#H[]A\A]f.L HIHtH{I$HHCP1HAPHuHEHH8u@HHtHt$Ht$ILmEHE0Lm0HH]Ht+H{L#H{HCHH9tHLHEH}1HMHEHEtH}H0H9tHHAWAVIAUATIUSHHMIH(HGHL$HH)I)HHHH HH9 HLD$HT$HT$HLD$HH](H$It::get() [with Config = debruijn_graph::config::debruijn_config]void path_extend::BidirectionalPath::PushFront(debruijn_graph::EdgeId, path_extend::Gap)bool restricted::pure_pointer::operator==(const restricted::pure_pointer&) const [with T = omnigraph::PairedEdge]N11path_extend12PathListenerEN11path_extend17BidirectionalPathEN11path_extend11TipSearcherEN11path_extend23PathExtenderTipSearcherEN11path_extend22ScaffoldGraphGapCloserEN11path_extend18TipFinderGapCloserEN11path_extend22ScoreFunctionGapCloserEGCC: (Ubuntu 7.5.0-3ubuntu1~18.04) 7.5.0zRx 0D8XBBA A(G0 (A ABBF 4Kc A LBBI B(H0A8L?n 8A0A(B BBBD .6(:<PHdBBA A(D0 (D ABBJ d(A ABBHBBD A(D0 (A ABBF (A ABBzPLRx 8$BAA G  AABD LXiBBB A(A0 (A BBBI (A BBBHBBD A(D0 (A ABBJ t(A ABB4UBDA w ABO AAB4,UBDA w ABO AAB(d{IAD aEBPzBBL B(A0A8P 8A0A(B BBBA (IAD jIBH.BBE B(D0A8GP 8A0A(B BBBI H\bBB B(A0A8JPV 8A0A(B BBBD LBBE B(A0A8D 8A0A(B BBBD bIM J |*A[ L AH8KBD A(G0~ (A ABBC xH0,:GDA dABE,RGDA vABK,bGDA HABI`BBB B(D0A8K@. 8A0A(B BBBH D 8A0A(B BBBJ ,x:GDA dABE"AZ E AH#BBD A(D0 (A ABBJ t(A ABB8BBD A(D0 (A ABBF <XgBBD A(G@_ (A ABBK ,AAL0 AAA `"BBB B(E0A8J@t 8F0A(B BBBE B 8I0A(B BBBD H$uBBE B(D0A8JP 8A0A(B BBBA Hp~BBE A(J0K (D ABBH D(D ABB<rBBD A(G@O (A ABBK ,AAJ0 AAF H, BBE B(D0A8W`V 8A0A(B BBBI Lx BBA A(D0 (D ABBI D (C DBBA  ADp A PABBE B(A0A8M; 8A0A(B BBBA H8 BBB B(A0A8D@[ 8D0A(B BBBJ ( OAAM m EAA H BBB B(A0A8D@[ 8D0A(B BBBJ ( OAAM m EAA 00 FAD  ABF <d BBD A(Q@ (A ABBC H BBB A(D0z (A BBBD z(E BBBP *BBB B(A0A8G 8A0A(B BBBH 0D FAD  ABF <x BBD A(Q@ (A ABBC d GBBB B(A0A8OP 8F0A(B BBBE j 8F0A(B BBBA 8 AC HN I .w.0\ FAD  ABF < BBD A(Q@ (A ABBC P mBBB A(D0 (F BBBK d (F BBBH @$ AC P2.]..i. 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In file '' on line . 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Proceeding to the next queue entry.Finished dijkstra run from vertex Dijkstra iteration startedVertex with distance fetched from queueDistance to vertex is found to be at distance from vertex UHAWAVAUATISHH8HdH%(HE1H8HtH1IM HHHC`HDž HDž(HDž0HHCpLHHHCxHHǃHǃHHHHHHHHHǃHǃHHHHHHH(H;0HǃHǃHHHHCXHDž@HDž`HDžpHHHHPHHXHhf Ht.fo@foPFfo`F HpHF0H8H(oFHHH 1)oF)oF)HFH)HHHm۶m۶mHHHH@H HHHHHRHtH9J(sHRHuH9HtH;H(s$HHHHHHH@8H@HHP0HP@H8IHtH1z H@L HHHH(H9 {XH8IHtH1H HHHLo(oGLg0)HHGLw H HHHDHHRHtH9J(sHRHuH9HtH;H(s+HHHHHH HLp8Lh@L`HHp0H(HHPH)H8H(H8IHtH11HHHtKHHfDHH@HtH;P(vH@HuH;Ht H;Q(HHHfoH)IH8HtH1HC`HH;CPHC`ChH8IHH1LLHH5GIvLM$$L LH1L@H8IH4H1HLH5LLH5H L1H(H LH51HH IGH9tHLM$$HpL LH1LH IGH9tHH(H9 3CXH8HHtH1H HtHEdH3%(\He[A\A]A^A_]o@H)H1)o@)o@)HHHo@oG@oG @HO0HHHm۶m۶mjHH(H@HP5LLHH5IvLM$$L LH1LH IGH9tHf.HLH5LLH5H L1H(H LH5HIHLH5HH IGH9tHLM$$HpL LH1LH IGH9tHf.H@gHH;C VHHHHL HHL@LI}H5"L LH5H 1LH(H I}H ID$H9tIIuLIL LH1LH IL9tLHLH5LLLH5H 1LHHLH5HIHLH5 HILH5H L1H(H LH IGH9tHIL9tHLM$$HpL LH1LH IGH9tHL@LI}H5+M4$L IuLL LH1LH IL9tLL@LI}H5"L LH5H 1LH(H I}H ID$H9tIuLHL LH1HH IL9tLcH@H H(HHLH HtHHHIL9tHH HIGH9tHH IWHH9uHLHH HIGH9uHSH IHL9tH IHL9  General dijkstra startedDijkstra finishedDistanceCounted(vertex)/srv/scratch/marinovg/spades-cloudspades-paper/assembler/src/common/modules/path_extend/read_cloud_path_extend/extender_support/candidate_selectors.cppH=HH=HH5Hdistance_t omnigraph::Dijkstra::GetDistance(omnigraph::Dijkstra::VertexId) const [with Graph = debruijn_graph::DeBruijnGraph; DijkstraSettings = omnigraph::ComposedDijkstraSettings, omnigraph::BoundProcessChecker, omnigraph::CompositePutChecker, omnigraph::ForwardNeighbourIteratorFactory >; distance_t = long unsigned int; omnigraph::Dijkstra::VertexId = restricted::pure_pointer >]bool restricted::pure_pointer::operator==(const restricted::pure_pointer&) const [with T = omnigraph::PairedVertex]bool restricted::pure_pointer::operator==(const restricted::pure_pointer&) const [with T = omnigraph::PairedEdge]debruijn_graph::EdgeId path_extend::scaffold_graph::EdgeGetter::GetEdgeFromScaffoldVertex(const path_extend::scaffold_graph::ScaffoldVertex&)virtual barcode_index::SimpleVertexEntry barcode_index::BarcodeIndexInfoExtractorWrapper::GetHeadEntry(const ScaffoldVertex&)St11_Mutex_baseILN9__gnu_cxx12_Lock_policyE2EESt16_Sp_counted_baseILN9__gnu_cxx12_Lock_policyE2EEN13barcode_index32ScaffoldVertexIndexInfoExtractorEN13barcode_index44IntersectingScaffoldVertexIndexInfoExtractorISt3setImSt4lessImESaImEEEEN13barcode_index32BarcodeIndexInfoExtractorWrapperEN9omnigraph16LengthCalculatorIN14debruijn_graph13DeBruijnGraphEmEEN9omnigraph20VertexProcessCheckerIN14debruijn_graph13DeBruijnGraphEmEEN9omnigraph19BoundProcessCheckerIN14debruijn_graph13DeBruijnGraphEmEEN9omnigraph16VertexPutCheckerIN14debruijn_graph13DeBruijnGraphEmEEN9omnigraph19CompositePutCheckerIN14debruijn_graph13DeBruijnGraphEmEEN9omnigraph16LengthPutCheckerIN14debruijn_graph13DeBruijnGraphEmEEN9omnigraph15BoundPutCheckerIN14debruijn_graph13DeBruijnGraphEmEEN9omnigraph23SimpleBarcodePutCheckerIN14debruijn_graph13DeBruijnGraphEmEEN11path_extend22ReachableEdgesSelectorEN11path_extend34CloudReachableEdgesSelectorFactoryEN11path_extend34DefaultCloudReachableEdgesSelectorEN11path_extend35SimpleReachableEdgesSelectorFactoryESt19_Sp_make_shared_tagSt23_Sp_counted_ptr_inplaceIN9omnigraph16LengthPutCheckerIN14debruijn_graph13DeBruijnGraphEmEESaIS4_ELN9__gnu_cxx12_Lock_policyE2EESt23_Sp_counted_ptr_inplaceIN9omnigraph15BoundPutCheckerIN14debruijn_graph13DeBruijnGraphEmEESaIS4_ELN9__gnu_cxx12_Lock_policyE2EESt23_Sp_counted_ptr_inplaceIN9omnigraph23SimpleBarcodePutCheckerIN14debruijn_graph13DeBruijnGraphEmEESaIS4_ELN9__gnu_cxx12_Lock_policyE2EESt23_Sp_counted_ptr_inplaceIN13barcode_index32BarcodeIndexInfoExtractorWrapperESaIS1_ELN9__gnu_cxx12_Lock_policyE2EESt23_Sp_counted_ptr_inplaceIN11path_extend34DefaultCloudReachableEdgesSelectorESaIS1_ELN9__gnu_cxx12_Lock_policyE2EEGCC: (Ubuntu 7.5.0-3ubuntu1~18.04) 7.5.0zRx  0<AG j DA Th|#X 0DXl! 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HHtH=tbmHkHtH=tmteHH߾([]fEPUuHEHPE PU ADEPUuHEHPE PU IDHEHPE uHEHPsHEHPE 4HEHP%USHHHH_HHtH=tkt;HHH[]CPSuHHPC PS fDHHPC uHHP=== Stack Trace ===AWAVH5AUATH=USHXdH%(H$H1HHH@HHr{87sCH=HHHHÉIHōCL%L=Ml*DsCH=HHL9H]HtbHH=HHI$H@IH{8uHH H@0L9tHwI$HxLw LH$HdH3%(uKHX[]A\A]A^A_HHH H@0H9HUSHHH_HtH=t\kH]HtH=tkt_H[]CPSuHHPC PS AfDCPSuHHPC PS IfDHHPC uHHH@H[]fDHHPC ;HHP-HSHHHHHCXH9tHH{8H[HSHHHHHCXH9tHH{8HH߾h[AWAVIAUATIUSHHHOHHI)H)HHH4IH9LH$H]HMMH$III)MtHII9t LHLHL$L$HL$L$IODM)L9tLLLIMHtHLmLuL}H[]A\A]A^A_L<FfDHH9-HuME1E1>H=SHtot+[fGPWuHPC PS HPC uHH[H@ General Seed length: Getting initial coverageInitial coverage: Got predicateSimpleBarcodeEntryCollectorGetting unique edgesApplying predicatePushed back Finished getting unique edgesGot unique edges_Map_base::at/D!DF E E D F DEDFFBEBCFBEFFF B'D)B+B,A.B0D2B4C7D7B7B8BA5!?D ? > > ?>CDCQ?>??>@"C"B$A$A%?'A+A+@-A-A.A0=4>4?7A:?;A>??@o9S!5     Ht3ATIUSHHsLHkHHHu[]A\@AWAVLwAUATIUSHHH_Ht_Lf.HCAHtHH{ I9rHCE1HuEIu$I9w@HH1[]A\A]A^A_LH9]toHIM$Hx HI9vM9AuW(HI$LLHDHC HE(HHغ[]A\A]A^A_IAM9tE1IE I9$AAWAVAUATUSHHHHuH?IHI)H)HHH IH9LHT$H}HuLxHT$IIMt oAEH9t8LHHtoHHH9uHGHH)HHM| H9t5HLfDHtoHHH9uHH)HM|HtLeL}LuH[]A\A]A^A_f.HIHH9HuAE1E1 /srv/scratch/marinovg/spades-cloudspades-paper/assembler/src/common/assembly_graph/core/order_and_law.hppptr_.get() == rhs.ptr_.get()AUATUSHHH,HttH]ILCx%DHHtpL@x1HHLHwH9uXL9uHCI9D$uI$HCIL!L!H9tI$L!L#kL9u&HH[]A\A]H1[H]A\A]H H5H=HHN1HHwIHLHtHHt H1HH=HH=HH5Hbool restricted::pure_pointer::operator==(const restricted::pure_pointer&) const [with T = 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H(HIHHHH@H@ Lx(HH HHH@HH8H8H5HxH8I $L LHpHL HLH1H IL9tH8L@LL8I~H5 HI~HpH+0HkL*gHHH5HL IvHLL LHFHH IL9tH8wDH@HII~H5L8H8M4$L LHpL LH.LH IL9tH8MH5HIH5LI/@H5HHH@H5HIHH@H@ Lx(aIW@IWH0IW@ AD$+DHMH@H@ Lx(HH HHhHtHHHHIHH{pHHH{8HLHH{pIHHH{8HLvIHH89H IHL9tIH6HH8LI~8LHPHtH@HtHHHHtHLHHHmH IHL9G=H IHL9tH8HHHH{xIH{@HL\HH8HH8HHHHHhHHtHHHLuHHHtHHtHpLHxHHtHHuIHLHH IHL9HHHH@ 0@PSHH~H5H9t?*tuHC[1[SHH~H5H9t?*tuHC[1[SHH~H5H9t?*tuHC[1[SHH~H5H9t?*tuHC[1[basic_string::_M_construct null not validPathClusterStatisticsExtractor/srv/scratch/marinovg/spades-cloudspades-paper/assembler/src/common/modules/path_extend/read_cloud_path_extend/statistics/path_cluster_statistics.cpp/srv/scratch/marinovg/spades-cloudspades-paper/assembler/ext/include/boost/optional/optional.hpp/srv/scratch/marinovg/spades-cloudspades-paper/assembler/src/common/modules/path_extend/read_cloud_path_extend/intermediate_scaffolding/simple_graph.hppConstructing initial cluster storageConstructed initial cluster storageSHPHHHPHSHPHSHPHSHHP 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I9uH] HtHL}H]I9t&H;HCH9tH I9uH]HtHM9Lt IƘI$HtHA$xI$ I$ I$ I$ H9tI$ I$ H9tI$` I$p H9tI$@ I$P H9tI$ I$0 H9tI$ I$ H9tI$ I$ H9tI$ I$ H9tI$x I$ H9tI$X I$h H9tI$P I$` H9tI$0 I$@ H9tI$ I$ H9tA$tI$I$H9tI$I$H9tI$I$H9tI$hI$xH9tI$@I$PH9tI$ I$0H9tI$I$H9tI$I$H9tI$I$H9tI$I$H9tI$I$H9tI$`I$pH9tI$@I$PH9tA$I$xI$H9tI$XI$hH9tI$I$H9tI$xI$H9tI$I$(H9tI|$xI$H9tI|$8ID$HH9tI|$I(L9tH[]A\A]A^A_H[]A\A]A^A_fI$I$(H9tI$I$H9tI$I$H9tI$I$(H9tI$I$H9tI$I$(H9tI$I$H9tI$I$H9H>I$I$I$I$H96,H=SHtot+[fGPWuHPC PS HPC uHH[H@SHH(HtH{Ht [[HHHHt HSHHHHtH߾ [HHHHt HSHHHHtH߾ [No correct path!%lubasic_string::append -> Source: Sink: Graph: , len: Correct path Vertex info: , coverage: Normalized path clusters {, }: Final path clusters } All paths Resulting paths cluster_statistics---- Printing graphPrinted graph path clustersNormalizedResolved conflictsAborted by assert: this->is_initialized()No correct pathContainsVertex(start)ContainsVertex(end) target edges.Analyzed subgraphs-N%!(!}'`!(c-<LQ\'Q`s_v'Q%!O}! 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HxLHD$HhHIFLHxHD$Hx8LIHD$`IFHt$H\$PHl$XLl$hHxHD$H@HLHX IFHxHD$H@HH;X tOH|$0Ht$PH\$0Hl$8Ld$@Ll$HH$H@HD$HxAHt$H<$H\$PHl$XLd$`Ll$hHt$ H<$H H5H=Ht$H<$)Ht$ H<$HHD$H8HtHAWAVIAUATIUSHH5H8dH%(HD$(1HH@H9rHGHHxH@@Hfu%HD$(dH3%(H8[]A\A]A^A_fIHD$H@ H9fHH#Ht$HP@H@8HD$IGHT$HxIIGLI8HxI}D$I9tiL`@HX81fMt=HO HLHHRHtH9J sHRHuH9t H;N rHI9HuHxffH*IHD$H@H9u}ILHH@@D$HxCfH*^fHHfHH H*XHfHH H*XLLD$LHLHxfH*parent()->child(node->position()) == nodeposition >= node->count()position < node->count()HLDOA8A@tjD9uRI@8AHL;Ht%HH9uopH9HujHȉWHH9tHD9AMcK8HuH8tHGHDLDOHH H5H=H H5H=H H5H=/srv/scratch/marinovg/spades-cloudspades-paper/assembler/ext/include/btree/safe_btree.hgeneration_ > 0AWAVAUATIUSH_IHHHdH%(HD$81ID$HI|$0LwL9L?MLDXE1DA9t]AML$HcHHL;Lv4_B HcAHHL9L:D9uA?8u.McJwD@H@8:DXE9tAID$ ED$(OIHHIu III9vMcMt$IPHoAD$IIJ<L!HHHHu HIT$8HHH9A|$HtjHL!A|$@HH8L@@tHHLL!Hp@HH8H9r>HIT$8>fDAEB`DHzLH9sHD$8dH3%(HH[]A\A]A^A_ÐID$ McD$(A|$@NHH9txWPI9|HHI$Lp LLt$(IHT$ LHD$H$HD$Hl$LHII>H98I|$ HHcPHHHH:L!H1HIT$8AD$@IL$0AL9Lq1ID$ AT$(MALHH!H9H 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H5H=}1SIHLH$PHIH9tA9H$PHIH9tLHHHH$0IL9tH$PHIH9tLE1911HAUHGATUSHIHH9tgLn HHL}HEH9Ht0HHx LItAI}HHEIDH[]A\A]fDH(tHG HHx ueHLH[]A\A]LLtYHU 1H9tHHp LItH{HIEIEpHU H1[]A\A]H1MAWAVIAUAT`USHIHHL$IHC Hs01ID$0ID$8ID$@ID$ HC(ID$(HC8HH)HIHHt,HH9HHHC8Hs0II)HH9IL$0IL$8Il$@tHLHHCHHsLIL$8ID$ID$Ml$ID$HHCPHID$PHCXID$XA$-HkHM`HHE Lm8L+m01HC HE(HC0HC8HC@HC(LHHtHH9LHIHK0HK8Lk@HE8Hu0II)H9tHLHHEHLHK8HCHHEPHCPHEXHCXEHCHCI^LsHuHu'HmIHHL[]A\A]A^A_DHL$HLHCfHL$LLID$HHHLHLLHHHHHHAWAVAUATIUSHHdH%(H$1HH#Lt$PL|$ LHP@H@8HD$PHGHT$XHxI|$HHHHu@IWHD$(HD$0HT$8HT$@HHD$HtTLLL|$PHHHQHuHL$8H f.HHQHuHUXHL$@HD$0HT$HIVHD$`D$XHD$xHT$hHT$pHs@HHL$LLt$H$HHHBHuHT$hH$ fHHBHuHCXH<$HT$pHD$xH|$`HEXH8HD$HEH9tcLc@E1H8@Mt=HH HLHHRHtH9J sHRHuH9t H;N rIHH9uL)l$H4$LHt$0LH$dH3%(HD$u$HĘ[]A\A]A^A_ÐHCXH$2Ht$0HLHAWAVIAUATUSHdH%(H$1HH=Ht$ HT$(H@HH9HH#HL|$pLL|$HP@H@8HD$pIFHT$xHxHIFHHxHT$HHD$PHHD$@D$HHD$hHT$XHT$`Hu@HD$HtYLHHD$pHDHHQHuHL$XH f.HHQHuHUXHL$`HD$PHT$hHD$HDŽ$D$xHDŽ$HPH$H$Hs@H;H|$HL$8H|$8HD$HDHHBHuH$HT$DHHBHuL{XHD$H$L$H$HEHL}XH8H9tdLc@E1H8Mt=HH HLHHRHtH9J sHRHuH9t H;N rIHH9uM)Ht$H|$Ht$PH|$MfuGH$dH3%(iHĸ[]A\A]A^A_fDL{XHD$#fDIHD$H@ H9H|$ HHt$pH#HP@H@8HD$pIFHT$xHxIIFHt$(I8HxI}D$L9L`@Hh81Mt=HO HLHHRHtH9J sHRHuH9t H;N rHL9HuHfH*T$IH=H@HH9H|$ HL|$pLL|$H#HP@H@8HD$pIFHT$xHxI~Ht$(HHHT$HHD$PHHD$@D$HHD$hHT$XHT$`Hu@HD$HtWLHHD$pHHHQHuHL$XH f.HHQHuHUXHL$`HD$PHT$hHD$HDŽ$D$xHDŽ$HPH$H$Hs@HqH|$HL$8H|$8IH HHBHuH$L HHBHuLsXH$L$L$HEHLuXH8H9taLc@E1H8@Mt=HH HLHHRHtH9J sHRHuH9t H;N rIHH9uM)H|$LHt$PH|$MxWfI*L$^f(bHT$(Ht$ LIBHfHH H*XD$eLfHAL H*XLsXE1LHT$(Ht$ IeHT$(Ht$ LHxfH*\$HfHH H*XD$H|$Ht$PHHH=HH=HH5Hbool path_extend::SimpleGraph::ContainsEdge(const Vertex&, const Vertex&) const [with Vertex = path_extend::scaffold_graph::ScaffoldVertex]boost::optional::reference_const_type boost::optional::get() const [with T = std::vector; boost::optional::reference_const_type = const std::vector&]static const Config& config_common::config::get() [with Config = debruijn_graph::config::debruijn_config]cluster_storage::Cluster::MappingInfo cluster_storage::Cluster::GetMapping(const ScaffoldVertex&) constvoid cluster_storage::EdgeInitialClusterStorageBuilder::AddClustersFromBarcodeOnEdge(const EdgeId&, const BarcodeId&, size_t, cluster_storage::InternalEdgeClusterStorage&, cluster_storage::ClusterStorage&, std::vector&) constbarcode_index::BarcodeIndexInfoExtractor::const_intersection_iterator::reference barcode_index::BarcodeIndexInfoExtractor::const_intersection_iterator::operator*() [with barcode_entry_t = barcode_index::FrameEdgeEntry; barcode_index::BarcodeIndexInfoExtractor::const_intersection_iterator::reference = barcode_index::BarcodeIndexInfoExtractor::IntersectionData]debruijn_graph::EdgeId path_extend::scaffold_graph::EdgeGetter::GetEdgeFromScaffoldVertex(const path_extend::scaffold_graph::ScaffoldVertex&)const Block& boost::dynamic_bitset::m_highest_block() const [with Block = long unsigned int; Allocator = std::allocator]boost::dynamic_bitset::~dynamic_bitset() [with Block = long unsigned int; Allocator = std::allocator]bool boost::dynamic_bitset::test(boost::dynamic_bitset::size_type) const [with Block = long unsigned int; Allocator = std::allocator; boost::dynamic_bitset::size_type = long unsigned int]const barcode_info_t& barcode_index::BarcodeIndexInfoExtractor::GetInfo(const EdgeId&, const BarcodeId&) const [with barcode_entry_t = barcode_index::FrameEdgeEntry; barcode_index::BarcodeIndexInfoExtractor::barcode_info_t = barcode_index::FrameBarcodeInfo; barcode_index::EdgeId = restricted::pure_pointer >; barcode_index::BarcodeId = long unsigned int]void btree::btree_iterator::increment_slow() [with Node = const btree::btree_node >, std::less > >, std::allocator > >, 256> >; Reference = const restricted::pure_pointer >&; Pointer = const restricted::pure_pointer >*]btree::safe_btree_iterator::reference btree::safe_btree_iterator::operator*() const [with Tree = const btree::safe_btree >, std::less > >, std::allocator > >, 256> >; Iterator = btree::btree_iterator >, std::less > >, std::allocator > >, 256> >, const restricted::pure_pointer >&, const restricted::pure_pointer >*>; btree::safe_btree_iterator::reference = const restricted::pure_pointer >&]bool restricted::pure_pointer::operator==(const restricted::pure_pointer&) const [with T = omnigraph::PairedEdge]size_t cluster_storage::Cluster::MappingInfo::GetSpan() 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validSimpleTransitionGraphValidator/srv/scratch/marinovg/spades-cloudspades-paper/assembler/src/common/modules/path_extend/read_cloud_path_extend/validation/transition_subgraph_validation.cpp=== Stack Trace ===AWAVH5AUATH=USHXdH%(H$H1HHH@HHr{87sCH=HHHHÉIHōCL%L=Ml*DsCH=HHL9H]HtbHH=HHI$H@IH{8uHH H@0L9tHwI$HxLw LH$HdH3%(uKHX[]A\A]A^A_HHH H@0H9H/srv/scratch/marinovg/spades-cloudspades-paper/assembler/src/common/assembly_graph/core/order_and_law.hppptr_.get() == rhs.ptr_.get()AUATHUSI1HHOHy@HHA8H,HH]IHK$DHHthHH1HHHHI9uQI9uL;CuHCIL!IL!H9tL#kM9u)H}tH[]A\A]DH1[]A\A]H H5H=HSHHHHHCXH9tHH{8H[HSHHHHHCXH9tHH{8HH߾h[AUATUSHLgHI9tnIDmtyHI9tPHkHtH=u݋EPUuHEHPE PU uHEHHPI9u@I]Ht7HH[]A\A]DHEHPE f.H[]A\A]H=SHtot+[fGPWuHPC PS HPC uHH[H@HAUATIUSHHHsLHk(LcHtH=t$mt]HLMuH[]A\A]fEPUuHEHPE PU uHEHPfDfDHEHPE AWAV1AUATUSHLfLfLHwHL,MI]IIHK(2f.HHHH(1IHHHwI9I9uHCH9FuHHCL!L!H9t)Ht$H<$Ht$LHCH<$H#L!H9uDHC H9FuHVHCHH4$H!H!H9t;H4$HH#kH#FH9t"H H5H=IEHu1H[]A\A]A^A_USHHHHtfDHHHuHEH}1HHEHEH[]SHH0H{H9t [@[AUATE1USHHH?H^HtD oCIH1HM@HCLeID$HuHEH HHuH[]A\A]fDL HIHt oCHH1@I$HCHAHuHEHH8uHHtHt$Ht$ILm-HE0Lm0HHMtH}H0H9tHH(hUSHHHHtfDHHHuHEH}1HHEHEH[]SHH0H{H9t [@[AWAVIAUATIUSIHHHHGH)I)HHH HH98HHT$HT$IHI_H$Mt%HIHBHIFtH=@MEM9LLGHHI9t3HtHzHHHHytH=uHGHI9uI}ILL)HL9I\ thILAHHH9t3HtHJHHHHKtH=uHAHH9uIImL)HI\MeI9up@AnIL9tSMt$MtH=uAFPAVuILPAF PAV uIILPL9u@ImHtHH$M}I]IEH[]A\A]A^A_ùHHILPAF f@MEM9>fDI}II9wHH9HuH$E1AUATE1USHHH?H^HtM0oCIH1HM@oC@HC(LeID$(HuHEH HHuH[]A\A]DL HIHt0oCHH1@oC@I$HC(HA(HuHEHH8uf.HHtHt$Ht$ILmHE0Lm0HHMtH}H0H9tHH(p\0XD!__nX_ X Z X _ X______X______"X%_'_)_*_*_0_0_2\3\4[5[8\9\;];`<[>[@_@XA[C[F]G^I^I_J\LZO_Q\R[S[VXX\YYXZ\_]AWAVAUATIUSHH9LFHH/HGMI)H)LHHH9HXLgLH)IIL9nM<@AGHEHHHt )L}HHHHL{HEHEI9tMH=uAGHtHqpuHHT$HH$QH$HT$H qp uHH$HQH$lMuMuHL[]A\A]A^A_fDkHI9tH]HtH=uًCPSuHHPC PS uHHP봐1Ht&HH9.LL$L$HL9tSHfAHHI9t3HtH H HKHHJtH=uHAHI9uM}I]I9u(fAl$HI9LcMtH=uAT$BAD$uI$LPAD$ PAT$ uI$LPfHH= HHH?fDAD$HEHHPt *LeHHIHLcHEHEI9tMtcH=uAD$HtPJHuHHt$HH$RH$Ht$P JH uHH4$HRH4$oHeH=tHPH@MeImLFHLH)HL9u!fD@HIL9:MtHI$HCHID$tH=uƃ@I]HtHIImMuHHPC /I$LPAD$ DHHH$HT$QH$H HT$\fDHHH$Ht$RH$P Ht$fDIDAWAVAUATUSHHL,MtfI]IIIHLCP HHtHL@P1IHLHuI9u0M9uHsLtHL[]A\A]A^A_fE1_Map_base::atUSHHHH1HHHsHHHtHHt HH[]H=USHHHH1HHHsHHHtHHtH[]ÐH1[]Getting correct pathgraph.ContainsVertex(next)Checking transitionChecked transitionCurrent vertex: Next vertex: H=HH=HH5Hbool restricted::pure_pointer::operator==(const restricted::pure_pointer&) const [with T = omnigraph::PairedEdge]boost::optional > path_extend::validation::SimpleTransitionGraphValidator::GetCorrectPath(const SimpleTransitionGraph&, path_extend::scaffold_graph::ScaffoldVertex, path_extend::scaffold_graph::ScaffoldVertex) constSt11_Mutex_baseILN9__gnu_cxx12_Lock_policyE2EESt16_Sp_counted_baseILN9__gnu_cxx12_Lock_policyE2EEN4func14TypedPredicateIN10restricted12pure_pointerIN9omnigraph10PairedEdgeIN14debruijn_graph18DeBruijnDataMasterEEEEEE21TypedPredicateConceptEN4func14TypedPredicateIN10restricted12pure_pointerIN9omnigraph10PairedEdgeIN14debruijn_graph18DeBruijnDataMasterEEEEEE19TypedPredicateModelIZNK11path_extend10validation23ContigTransitionStorage15CheckTransitionERKNSB_14scaffold_graph14ScaffoldVertexESH_EUlRKS8_E_EESt19_Sp_make_shared_tagSt23_Sp_counted_ptr_inplaceIN4func14TypedPredicateIN10restricted12pure_pointerIN9omnigraph10PairedEdgeIN14debruijn_graph18DeBruijnDataMasterEEEEEE19TypedPredicateModelIZNK11path_extend10validation23ContigTransitionStorage15CheckTransitionERKNSC_14scaffold_graph14ScaffoldVertexESI_EUlRKS9_E_EESaISM_ELN9__gnu_cxx12_Lock_policyE2EEGCC: (Ubuntu 7.5.0-3ubuntu1~18.04) 7.5.0zRx 0DX l4Af I C  4Kc A 0BAD G0f  AABH LBBI B(H0A8L?n 8A0A(B BBBD LhBBD A(I0 (A ABBF D (C ABBA 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mappings_.end()ATUISHHH1HHHuHLHtOHHtGHPHHP HSHP(HSHP0HHStH=uABH@8HC H[]A\DH H5H=@BH@8HC H[]A\USHH_HtQL@HCAHtHHK I9rHCE1HuEIu1HI9HGIGH[]fH_1H9_HtHHILEHH HAUHGATUSHIHH9tL*L;n Hs;HGH9Ht#HL;h HvjHxHEHEH[]A\A]ÐvfHO 1H9HtHL;h Hs+H{HEHDH(t H_ HH9C r4HLH[]A\A]HH1[]A\A]HH1[]A\A]HATUHSHHILU0IHMHEHtYE1LMHHHHHHtHtHrLXHu@H@H0LXLXH0H@I9uKRHI9I\`ID$HI0L)H HHHH!HtRHHRfDDHSDSLPLSLPLS LJHP H@H@H@H@ HS(H0H0H9t>HtHPLKHuCHCH0LKLKH0HCH9uI9tRMx0L)H HHHH!LdIIM DI0HwM9LuHMHtHKvLmH]HIHD$dH3%(Lmu]H[]A\A]A^A_@AK= 1 and local_ids.size() <= 2Head cluster id: Tail cluster id: AWAVIAUATIUSHLMHH$LD$Lt$PIHT$HD$PLHD$XHD$`H3dH%(H$x1HsHH+H=HT$XHD$PHH)HH9HHt$0LHD$0H$HHL$HuHULH|$pLHH$HtHH{pH{8HHD$XHt$8LH@HD$8HHLl$@HuHULLHLH|$HHtHH{pH{8HL;d$pHH#EIWL$H@ H+BI9H$HtH$HtH|$PHtH$xdH3%(HĈ[]A\A]A^A_@HT$XHD$PHH)Hw H9@H H5H=oDHILLLHD$XHuHHUL`H|$HH8HLhH@HHL$LHDHH@HtH9P sH@HuL9tH;S s_0IHHD$LHS HC(HHHC HHu I98LHHE(H$Lc(HtH8HH9H1#L$LI~H5HD$XI~HpL$IvHLL$LHx1HH$IL9tLHD$PHuHHUHHD$H|$HILpH@HHL$MHDIH@HtH9P sH@HuM9tI;P sw0LD$ IHD$Ht$ IP I@(LLD$(HI@ HLD$(8Hu I9bLLLD$ IE(LD$ H$HD$HI@(tH8IHAH1+L$LI~H5HD$PI~H0IEL$IvLHD$L$H|$LHt1H$IL9tL@HHD$HD$H3fDLHD$ HD$ IfDLMN1HB I9@ @D1HB H9C @H$IHL9tLH$HtH$HtH|$PHtHHH$HHtHH{8HHHH$HHtH{8HHHH_H|$HHHtH1/srv/scratch/marinovg/spades-cloudspades-paper/assembler/src/common/modules/path_extend/scaffolder2015/scaffold_vertex.hppExtracting clusters from edge vertex.GetType() == EdgeProcessed out of AWAVAUATUSHXdH%(H$H1HGL HhL)HHHA1LcIcHHI9sH1LILI9HD$ HC HkHD$LHHD$HD$`HD$H$HD$(H$HD$0H$HD$8fDLd$LL/H|$LLd$hLl$`Mt'H=IAD$H|$hH=@LMIItLL|$PLl$XH8IHtH HuLd$PH|$Ll$HLHL|$pMt5IGHHM(L LCLLHHD$PIGPM?XZMuHC(HH|$HC(t1Ht$H'H|$IHD$L9t$ vHCL H$HdH3%(HX[]A\A]A^A_AD$LD[fDL|$(LLl$0H5LHt$XLIwL|$8M$$LL$LHLTH$IGH9tH|$(\fDH8IHHL|$(LLl$0H5 LHs(LH5HIHCLHpH+0HIwL|$8M$$LL$LHL`H$IGH9tH|$(H H5H=MtLHATUHSHHILU0IHMHEHtYE1LMHHHHHHt= left_pos_UHAWL~AVLPAUATSLeIHLHH(LH dH%(HE1LLIEI|$ LHEIEHEIE L@IT$8L41LMHHEH6PH7PH5PH8PHH}H HtH}HtHXHtH{81Lc8HHChH(HC@HCxHǃHC8HCX?ǃ?ǃ?HCpHHHHAH9,HLLH)HH(H@ HH HHǃHHHHjLH8XYu4HHHtHEdH3%(He[A\A]A^A_]ÐIF0H{pLHDžXHDž`HPHDžhDžp?HDžxHELHLLLHLIDH(HFHH9H H5H=)LHHXHtHILHLLIHHHtIAWAVAUATUSHHk(HhH2H$PHT$@HRH|$pIHHD$dH %(H$X1LHH$XH$HtHD$@H0HPH$ IHHD$HLL|$HS LLHH$XHD$xHtH$(HtHL$pHSHt$xHA0HAHAHA(HAHHA ?HHA0HL$@Ht$H#H$LyHH@ H+BHL$I9H$HL$PH$H$HD$`H$H$fDHD$xI_ H@Ht:IW HL$HH@HtH9P sH@HuH;L$t H;Q tHD$@H|$`H0HPH$Ht$`HDŽ$ H$(HD$HHxH$HDŽ$@HtHH\$Ht$HHHLHDŽ$HDŽ$HDŽ$LLHH$L$H$IG LE1L$HDŽ$HDŽ$HDŽ$H)H$HHHt.HH9 HL$H$ILL9L$H$L$Lt&Ht HHHHI9uHt$`H|$pH$H$H$I$I|$pI|$8LH\$HH{pH{8HH$8HtLH9D$IhHD$xHXH;\$H$L$L$PH$MgHHHD$ @H$H@Ht;HS HL$@HH@HtH9P sH@HuH9L$t H;Q LHD$@H|$H0HPHD$ Ht$H$ H$H$(HD$HHxH$XHDŽ$@HtLl$Ht$HHS LLLHDŽ$HDŽ$HDŽ$LLHH$L$HC HLL$H$H|$pLLHI~8LLl$I}8LH$8HtfHH;D$HRH$XdH3 %(HD$ppHh[]A\A]A^A_@HD$@H0HPH$HHD$XH$Ht$XHDŽ$ H$(HD$HHxH$HDŽ$@HtHH\$Ht$HHHLHDŽ$HDŽ$HDŽ$HHLH$H$XH$fo$pLHCHC0HHCH$hC L$H$HCH$Hk8H$o$It$8HC8HCHHHC@H$CXHChH$HCPH$LspH$fo$It$pHCpHǃLHCxH$HǃL$HH$HH$o$I$HǃHǃHH$HǃH$HH$0H$L$HH$8HH$@HH$HHIG LH)HDŽ$HDŽ$HDŽ$H$HHHHH9HL$H$HD$hHD$hHL9H$H$H$EHH$HD$ H$HD$(H$HD$0H$HD$8fDHHEHT$ HHHCHHCHEHCoE HC0H$C HE@Ls8HT$(Hu8HC8HCHLHC@HEPHCPoEXHChL$CXHExHKpHT$0HupHCpHǃHHL$PHCxHHoHǃH$HHT$8HHHǃHǃHHHoHǃH$HHHHHHHHHHI9AHt$`H|$pH$H$H|$XHD$hf.H\$hH|$`HHH$I|$8LL|$I8LH$8HtH|$pHIHHI~8LHHL9t"I~8LIHLHHQHH$HtHH$HH%HHHH$HwHHH$XHHtH$(HHH$XHHuH|$`HHH|$X@H|$PHLHHHHl$hH9tH}8HHHHHHH$HqgLIHHLHIHI!^/srv/scratch/marinovg/spades-cloudspades-paper/assembler/src/common/assembly_graph/core/order_and_law.hppptr_.get() == rhs.ptr_.get()AUATUSHHH,HttH]ILCx%DHHtpL@x1HHLHwH9uXL9uHCI9D$uI$HCIL!L!H9tI$L!L#kL9u&HH[]A\A]H1[H]A\A]H H5H=HHN1HHwIHLHtHHt HHH=SHHHHp H@(HtBHHf.HH@HtH9P sH@HuH9tH;Q [1[HHHH@@HHHN1HHwIHLHtHHt H1HAUATUSHHH(dH%(HD$1HH#HHP@H@8H$HGHT$HxH}IHI8HI|$L9t~Hh@HX8E1fDHt=HO HHHHRHtH9J sHRHuH9t H;N rIL9HuH\$dH3%(LuH([]A\A]E1ScaffoldVertexSimpleEntryExtractor/srv/scratch/marinovg/spades-cloudspades-paper/assembler/src/common/barcode_index/scaffold_vertex_index_builder.hppExtracting entry from pathTail threshold: Current tail: Current entry size: Result size: AWAVIAUATIUSHxH|$PdH%(H$h1H8HtH1HI<$IH@XH|$PI+G8I^HDŽ$HDŽ$HDŽ$HHHHIG@I+GHHHIW0I+W GHGHG(DŽ$?HDŽ$HDŽ$HHHD$@HGHGHG H$I<$HD$XH$H$HH(Ll$pHLLl$LHH|$xHD$8HtH8HHtH1H|$@H$HD$ )HD$ H$H$H9D$@wH|$8H9|$ gIO H$HI+G(HHHxHHZIO8HHH)HHHH@INHD$xHHT$pH!HB H+AI9F0`HD$8H+D$ HD$H8HHtH1IF(MfH\$HD$(ID$HHxH@PHHD$ID$HxHXHHD$H1HD$0/@HD$Lk(HCPH9D$r L9l$(HHID$Ht$HxH8H9uHD$0H9II]H$1HHH$LIMI0HN*HHHH1IHHHI9H9uIHpIUHIHL9xH8HHtH1)HH#T$pH|$ IFHz HH+PHD$0HHT$ HH$H$H9D$@H$Hu ?HHt6H{vLt$PHkHLHtHHLHHuH8HHtH1H|$XH$hdH3%(HD$PHx[]A\A]A^A_@H9l$HHC HD$`HtHELmHfDIUH|$XHHH@LHPHWHHHHHHH$HH{H5Ht$H{LeH$HsHL$LHv1LH$HH9tHnH$HH{H5H$H{LeH$HsHL$LH{1LH$HH9tHT$(HsSHT$8HSHT$@HS HF1HD$HHD$0HD$HHC(HEHD$8HD$@HH|$HtH$dH3 %(HH[]A\A]A^ÐLd$H$MH=utAT$HD$Ld$BAD$HT$LHH|$HtMtLHt$0UIT$HD$Ld$@IT$HD$Ld$CHCHCHC HC(@HD$HD$DHD$HD$0HHt$0HH|$HtHH|$PIHL9tLHH|$HHtMtLAWAVIAUATIUSIHHHHGH)I)HHH HH9HHT$HT$IHI^H$LLtHI}L9LHfFHHI9t3HtHrHHHHqtH=uHFHI9uIuHLH)HL9I\ thHLAHHH9t3HtHJHHHHKtH=uHAHH9uIImL)HH\MeI9up@AoIL9tSM|$MtH=uAGPAWuILPAG PAW 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H*XLsXE1LHT$(Ht$ IeHT$(Ht$ LHxfH*\$HfHH H*XD$H|$Ht$PHHH=HH=HH5Hcluster_storage::Cluster::MappingInfo cluster_storage::Cluster::GetMapping(const ScaffoldVertex&) constvoid cluster_storage::EdgeInitialClusterStorageBuilder::AddClustersFromBarcodeOnEdge(const EdgeId&, const BarcodeId&, size_t, cluster_storage::InternalEdgeClusterStorage&, cluster_storage::ClusterStorage&, std::vector&) constsize_t cluster_storage::Cluster::MappingInfo::GetSpan() constdebruijn_graph::EdgeId path_extend::scaffold_graph::EdgeGetter::GetEdgeFromScaffoldVertex(const path_extend::scaffold_graph::ScaffoldVertex&)barcode_index::BarcodeIndexInfoExtractor::const_intersection_iterator::reference barcode_index::BarcodeIndexInfoExtractor::const_intersection_iterator::operator*() [with barcode_entry_t = barcode_index::FrameEdgeEntry; barcode_index::BarcodeIndexInfoExtractor::const_intersection_iterator::reference = barcode_index::BarcodeIndexInfoExtractor::IntersectionData]void btree::btree_iterator::increment_slow() [with Node = const btree::btree_node >, std::less > >, std::allocator > >, 256> >; Reference = const restricted::pure_pointer >&; Pointer = const restricted::pure_pointer >*]btree::safe_btree_iterator::reference btree::safe_btree_iterator::operator*() const [with Tree = const btree::safe_btree >, std::less > >, std::allocator > >, 256> >; Iterator = btree::btree_iterator >, std::less > >, std::allocator > >, 256> >, const restricted::pure_pointer >&, const restricted::pure_pointer >*>; btree::safe_btree_iterator::reference = const restricted::pure_pointer >&]static const Config& config_common::config::get() [with Config = debruijn_graph::config::debruijn_config]const Block& boost::dynamic_bitset::m_highest_block() const [with Block = long unsigned int; Allocator = std::allocator]boost::dynamic_bitset::~dynamic_bitset() [with Block = long unsigned int; Allocator = std::allocator]bool restricted::pure_pointer::operator==(const restricted::pure_pointer&) const [with T = omnigraph::PairedEdge]St11_Mutex_baseILN9__gnu_cxx12_Lock_policyE2EESt16_Sp_counted_baseILN9__gnu_cxx12_Lock_policyE2EEN13barcode_index20AbstractBarcodeIndexEN13barcode_index33AbstractBarcodeIndexInfoExtractorEN13barcode_index25BarcodeIndexInfoExtractorINS_14FrameEdgeEntryEEEN13barcode_index30FrameBarcodeIndexInfoExtractorEN13barcode_index12BarcodeIndexINS_14FrameEdgeEntryEEEN15cluster_storage20EdgeClusterExtractorEN15cluster_storage26IndexBasedClusterExtractorEN15cluster_storage28InitialClusterStorageBuilderEN15cluster_storage32EdgeInitialClusterStorageBuilderEN13barcode_index19TailThresholdGetterEN13barcode_index27FractionTailThresholdGetterEN13barcode_index36AbstractScaffoldVertexEntryExtractorISt3setImSt4lessImESaImEEEEN13barcode_index34ScaffoldVertexSimpleEntryExtractorESt19_Sp_make_shared_tagSt23_Sp_counted_ptr_inplaceIN13barcode_index27FractionTailThresholdGetterESaIS1_ELN9__gnu_cxx12_Lock_policyE2EESt23_Sp_counted_ptr_inplaceIN15cluster_storage26IndexBasedClusterExtractorESaIS1_ELN9__gnu_cxx12_Lock_policyE2EESt23_Sp_counted_ptr_inplaceIN15cluster_storage32EdgeInitialClusterStorageBuilderESaIS1_ELN9__gnu_cxx12_Lock_policyE2EESt23_Sp_counted_ptr_inplaceIN15cluster_storage21InitialClusterStorageESaIS1_ELN9__gnu_cxx12_Lock_policyE2EESt23_Sp_counted_ptr_inplaceIN11path_extend18PathClusterCheckerESaIS1_ELN9__gnu_cxx12_Lock_policyE2EESt23_Sp_counted_ptr_inplaceIN13barcode_index30FrameBarcodeIndexInfoExtractorESaIS1_ELN9__gnu_cxx12_Lock_policyE2EESt23_Sp_counted_ptr_inplaceIN13barcode_index34ScaffoldVertexSimpleEntryExtractorESaIS1_ELN9__gnu_cxx12_Lock_policyE2EESt23_Sp_counted_ptr_inplaceIN13barcode_index19ScaffoldVertexIndexISt3setImSt4lessImESaImEEEESaIS7_ELN9__gnu_cxx12_Lock_policyE2EEC??_GCC: 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HH[]H=USHHHH1HHHsHHHtHHtH[]ÐH1[]HATUHSHHILU0IHMHEHtYE1LMHHHHHHt::ContainsEdge(const Vertex&, const Vertex&) const [with Vertex = path_extend::scaffold_graph::ScaffoldVertex]void path_extend::SimpleGraph::AddEdge(const Vertex&, const Vertex&) [with Vertex = path_extend::scaffold_graph::ScaffoldVertex]GCC: (Ubuntu 7.5.0-3ubuntu1~18.04) 7.5.0zRx 09AwL4Kc A HhBBF B(D0A8P@P 8D0A(B BBBB (AAG ^ DAL LBBI B(H0A8L?n 8A0A(B BBBD 0.0DLAAD v AAB DFAx HBBA A(D0 (D ABBJ d(A ABBbIM J |` {BBB B(A0A8Dp 8A0A(B BBBE t8A0A(B BBBHKBD A(G0~ (A ABBC xH04BAD h ABN AAB$VAAG JAA0"AV I A8PBBD A(D0 (A ABBE "AV I AAYHBBA A(D0 (D ABBI D(A ABBzPLRx <$BBD A(G@| (A ABBF ,dAAL0 AAB <BBD A(G@O (A ABBK H~BBE A(J0K (D ABBH D(D ABBL XBBE B(K0A8Mpo 8A0A(B BBBC DpBBB A(D0GP4 0A(A BBBB <TBBD A(G@O (A ABBK ,YAAG0 AAG L(BBE B(D0A8GP% 8A0A(B BBBJ LxBBB B(A0A8Gp 8A0A(B BBBG 8BBD A(G0w (A ABBC 0:AAJ N CAB RFAHHBBB B(D0A8G@ 8A0A(B BBBK LxBBE B(F0A8M@ 8D0A(B BBBF HBBB B(A0A8D@[ 8D0A(B BBBJ 00IAAM m AAB DCALTBBE B(K0A8MP% 8A0A(B BBBE 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validLeftId,LeftLength,LeftCov,LeftSize,RightId,RightLength,RightCov,RightSize,Intersection,Distance,Genome,Correct/srv/scratch/marinovg/spades-cloudspades-paper/assembler/src/common/assembly_graph/core/order_and_law.hpp/srv/scratch/marinovg/spades-cloudspades-paper/assembler/src/common/modules/path_extend/read_cloud_path_extend/statistics/long_edge_dataset.cppreference_transition_storage.IsEdgeCovered(transition.first_)reference_transition_storage.IsEdgeCovered(transition.second_)(long_edge_path_index.Contains(transition.first_))(long_edge_path_index.Contains(transition.second_))Correct transition from different paths!HHGH0HtH=tGtÐGPWu=== Stack Trace ===AWAVH5AUATH=USHXdH%(H$H1HHH@HHr{87sCH=HHHHÉIHōCL%L=Ml*DsCH=HHL9H]HtbHH=HHI$H@IH{8uHH H@0L9tHwI$HxLw LH$HdH3%(uKHX[]A\A]A^A_HHH H@0H9H,ptr_.get() == rhs.ptr_.get() General distances countedGetting path ids, map::atGetting long edge dataset reference edges reference paths correct pairsdefaultCovered edges: range_size > 0Processed pairs out of random pairs. long edges ultralong edgeslong_edge_dataset_%lu;  1 &   9:?BB'X(h-g?Q%1/; P]O     N 4   M      // + /  +   .   /+h u /!cp9I\n7\RPMZ866,6f;?Q%#U0"   ! 6    8  0IB  /  *    K/E      4^  g =d%555U5:YhScQ F          ?   ?  9+LQD!}^]g   UIHHHATSIHL`Lht#)p)M)U)])e)m)u)}dH%(H81HFH HDž Dž$0H)HEH\$H(H@HHH0AIT$LHI$HcHH8dH3<%(Lu He[A\]AWAVAUATIUSHHFHH|$HnH9H$qLs Lm M9M9H9$M|$M9rsH9$tHLp HI$M9rM9w&HLh HID$M9v_L9uIl$ID$Lm I$Il$I$Ls M9jHD$Ao$AoD$@HD$H[]A\A]A^A_DH;$uM9sL9tSM9H$fsfH9nt{HMHID$Lh mH9$cGfH<$HI$ID$GH9nHtH$Lm Lp M9tH~HMHI$Lp cUSHHHHtfDHHHuHEH}1H0HH}HEHEH9tH[]fH[]USHHHHtfDHHHuHEH}1H0HH}HEHEH9tH[]fH[]USHHHHtfDHHHuHEH}1H0HH}HEHEH9tH[]fH[]Verification of expression 'is_initialized()' failed in function ''. In file '' on line . 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HE(HC0HC8HC@HC(LHHtHH9LHIHK0HK8Lk@HE8Hu0II)H9tHLHHEHLHK8HCHHEPHCPHEXHCXEHCHCI^LsHuHu'HmIHHL[]A\A]A^A_DHL$HLHCfHL$LLID$HHHLHLLHHHHHHAWAVAUATIUSHHdH%(H$1HH#Lt$PL|$ LHP@H@8HD$PHGHT$XHxI|$HHHHu@IWHD$(HD$0HT$8HT$@HHD$HtTLLL|$PHHHQHuHL$8H f.HHQHuHUXHL$@HD$0HT$HIVHD$`D$XHD$xHT$hHT$pHs@HHL$LLt$H$HHHBHuHT$hH$ fHHBHuHCXH<$HT$pHD$xH|$`HEXH8HD$HEH9tcLc@E1H8@Mt=HH HLHHRHtH9J sHRHuH9t H;N rIHH9uL)l$H4$LHt$0LH$dH3%(HD$u$HĘ[]A\A]A^A_ÐHCXH$2Ht$0HLHAWAVIAUATUSHdH%(H$1HH=Ht$ HT$(H@HH9HH#HL|$pLL|$HP@H@8HD$pIFHT$xHxHIFHHxHT$HHD$PHHD$@D$HHD$hHT$XHT$`Hu@HD$HtYLHHD$pHDHHQHuHL$XH f.HHQHuHUXHL$`HD$PHT$hHD$HDŽ$D$xHDŽ$HPH$H$Hs@H;H|$HL$8H|$8HD$HDHHBHuH$HT$DHHBHuL{XHD$H$L$H$HEHL}XH8H9tdLc@E1H8Mt=HH HLHHRHtH9J sHRHuH9t H;N rIHH9uM)Ht$H|$Ht$PH|$MfuGH$dH3%(iHĸ[]A\A]A^A_fDL{XHD$#fDIHD$H@ H9H|$ HHt$pH#HP@H@8HD$pIFHT$xHxIIFHt$(I8HxI}D$L9L`@Hh81Mt=HO HLHHRHtH9J sHRHuH9t H;N rHL9HuHfH*T$IH=H@HH9H|$ HL|$pLL|$H#HP@H@8HD$pIFHT$xHxI~Ht$(HHHT$HHD$PHHD$@D$HHD$hHT$XHT$`Hu@HD$HtWLHHD$pHHHQHuHL$XH f.HHQHuHUXHL$`HD$PHT$hHD$HDŽ$D$xHDŽ$HPH$H$Hs@HqH|$HL$8H|$8IH HHBHuH$L HHBHuLsXH$L$L$HEHLuXH8H9taLc@E1H8@Mt=HH HLHHRHtH9J sHRHuH9t H;N rIHH9uM)H|$LHt$PH|$MxWfI*L$^f(bHT$(Ht$ LIBHfHH H*XD$eLfHAL H*XLsXE1LHT$(Ht$ IeHT$(Ht$ LHxfH*\$HfHH H*XD$H|$Ht$PHHH=HH=HH5Hstd::vector path_extend::LongEdgePairDatasetExtractor::GetCorrectEntries(std::shared_ptr, const path_extend::validation::ContigTransitionStorage&, const path_extend::validation::ReferencePathIndex&, const std::map&) constbarcode_index::BarcodeIndexInfoExtractor::const_intersection_iterator::reference barcode_index::BarcodeIndexInfoExtractor::const_intersection_iterator::operator*() [with barcode_entry_t = barcode_index::FrameEdgeEntry; barcode_index::BarcodeIndexInfoExtractor::const_intersection_iterator::reference = barcode_index::BarcodeIndexInfoExtractor::IntersectionData]void btree::btree_iterator::increment_slow() [with Node = const btree::btree_node >, std::less > >, std::allocator > >, 256> >; Reference = const restricted::pure_pointer >&; Pointer = const restricted::pure_pointer >*]btree::safe_btree_iterator::reference btree::safe_btree_iterator::operator*() const [with Tree = const btree::safe_btree >, std::less > >, std::allocator > >, 256> >; Iterator = btree::btree_iterator >, std::less > >, std::allocator > >, 256> >, const restricted::pure_pointer >&, const restricted::pure_pointer >*>; btree::safe_btree_iterator::reference = const restricted::pure_pointer >&]static const Config& config_common::config::get() [with Config = debruijn_graph::config::debruijn_config]const Block& boost::dynamic_bitset::m_highest_block() const [with Block = long unsigned int; Allocator = std::allocator]boost::dynamic_bitset::~dynamic_bitset() [with Block = long unsigned int; Allocator = std::allocator]bool restricted::pure_pointer::operator==(const restricted::pure_pointer&) const [with T = omnigraph::PairedEdge]path_extend::LongEdgePairDataset path_extend::LongEdgePairDatasetExtractor::GetLongEdgeDataset(const std::vector >&) 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HSHP(HSHP0HHStH=uABH@8HC H[]A\DH H5H=@BH@8HC H[]A\USHH_HtQL@HCAHtHHK I9rHCE1HuEIu1HI9HGIGH[]fH_1H9_HtHHILEHH HAUHGATUSHIHH9tL*L;n Hs;HGH9Ht#HL;h HvjHxHEHEH[]A\A]ÐvfHO 1H9HtHL;h Hs+H{HEHDH(t H_ HH9C r4HLH[]A\A]HH1[]A\A]HH1[]A\A]HATUHSHHILU0IHMHEHtYE1LMHHHHHHt= 1 and local_ids.size() <= 2Head cluster id: Tail cluster id: AWAVIAUATIUSHLMHH$LD$Lt$PIHT$HD$PLHD$XHD$`H3dH%(H$x1HsHH+H=HT$XHD$PHH)HH9HHt$0LHD$0H$HHL$HuHULH|$pLHH$HtHH{pH{8HHD$XHt$8LH@HD$8HHLl$@HuHULLHLH|$HHtHH{pH{8HL;d$pHH#EIWL$H@ H+BI9H$HtH$HtH|$PHtH$xdH3%(HĈ[]A\A]A^A_@HT$XHD$PHH)Hw H9@H H5H=oDHILLLHD$XHuHHUL`H|$HH8HLhH@HHL$LHDHH@HtH9P sH@HuL9tH;S s_0IHHD$LHS HC(HHHC HHu I98LHHE(H$Lc(HtH8HH9H1#L$LI~H5HD$XI~HpL$IvHLL$LHx1HH$IL9tLHD$PHuHHUHHD$H|$HILpH@HHL$MHDIH@HtH9P sH@HuM9tI;P sw0LD$ IHD$Ht$ IP I@(LLD$(HI@ HLD$(8Hu I9bLLLD$ IE(LD$ H$HD$HI@(tH8IHAH1+L$LI~H5HD$PI~H0IEL$IvLHD$L$H|$LHt1H$IL9tL@HHD$HD$H3fDLHD$ HD$ IfDLMN1HB I9@ @D1HB H9C @H$IHL9tLH$HtH$HtH|$PHtHHH$HHtHH{8HHHH$HHtH{8HHHH_H|$HHHtH1/srv/scratch/marinovg/spades-cloudspades-paper/assembler/src/common/modules/path_extend/scaffolder2015/scaffold_vertex.hppExtracting clusters from edge vertex.GetType() == EdgeProcessed out of AWAVAUATUSHXdH%(H$H1HGL HhL)HHHA1LcIcHHI9sH1LILI9HD$ HC HkHD$LHHD$HD$`HD$H$HD$(H$HD$0H$HD$8fDLd$LL/H|$LLd$hLl$`Mt'H=IAD$H|$hH=@LMIItLL|$PLl$XH8IHtH HuLd$PH|$Ll$HLHL|$pMt5IGHHM(L LCLLHHD$PIGPM?XZMuHC(HH|$HC(t1Ht$H'H|$IHD$L9t$ vHCL H$HdH3%(HX[]A\A]A^A_AD$LD[fDL|$(LLl$0H5LHt$XLIwL|$8M$$LL$LHLTH$IGH9tH|$(\fDH8IHHL|$(LLl$0H5 LHs(LH5HIHCLHpH+0HIwL|$8M$$LL$LHL`H$IGH9tH|$(H H5H=MtLHATUHSHHILU0IHMHEHtYE1LMHHHHHHt= left_pos_UHAWL~AVLPAUATSLeIHLHH(LH dH%(HE1LLIEI|$ LHEIEHEIE L@IT$8L41LMHHEH6PH7PH5PH8PHH}H HtH}HtHXHtH{81Lc8HHChH(HC@HCxHǃHC8HCX?ǃ?ǃ?HCpHHHHAH9,HLLH)HH(H@ HH HHǃHHHHjLH8XYu4HHHtHEdH3%(He[A\A]A^A_]ÐIF0H{pLHDžXHDž`HPHDžhDžp?HDžxHELHLLLHLIDH(HFHH9H H5H=)LHHXHtHILHLLIHHHtIHATUHSHHILU0IHMHEHtYE1LMHHHHHHtHS HL$HH@HtH9P sH@HuH9L$t H;Q LHD$ H|$H0HPHD$0Ht$H$HD$`H$HD$(HxH$HDŽ$HtLl$Ht$(HS LLLHDŽ$HDŽ$HDŽ$LLHH$L$HC HLL$H$H|$@LLHI~8LLl$I}8LH$Ht DHH;D$HRH$dH3 %(HD$@H[]A\A]A^A_@HD$ H0HPH$HHD$0HD$`Ht$0HDŽ$H$HD$(HxH$HDŽ$HtHH\$Ht$(HHHHDŽ$HDŽ$HDŽ$HHLH$H$HT$pfo$ HHCHC0HHCH$C L$H\$pHCH$@Lc8H$o$XHu8HC8HCHLHC@H$PCXHChL$HCPH$xL{pH$fo$HupHCpHǃLHCxH$HǃL$HH$HHT$xo$HHǃHǃHH$HǃH|$xHH$ML$HH$HH$HH$HH$IF HDŽ$HDŽ$HDŽ$I)H$LHHHH9LL$H$IML9L$L$L$Mt*Mt HLHII9uHt$8H|$@L$H|$XH|$0fE1HHI~8LLt$I~8LH$HtH|$@HHIHHH$HtHHHH|$8HHH$H}8HLHM9t$I8LIHHpHH$HtHH$He[6HHH$HHtH$HHH$HHuH|$8HHH|$0HM9t$I8LIHLILHLHIIHH$Hf\ H/srv/scratch/marinovg/spades-cloudspades-paper/assembler/src/common/assembly_graph/core/order_and_law.hppptr_.get() == rhs.ptr_.get()AUATUSHHH,HttH]ILCx%DHHtpL@x1HHLHwH9uXL9uHCI9D$uI$HCIL!L!H9tI$L!L#kL9u&HH[]A\A]H1[H]A\A]H H5H=HHN1HHwIHLHtHHt HHH=SHHHHp H@(HtBHHf.HH@HtH9P sH@HuH9tH;Q [1[HHHH@@HHHN1HHwIHLHtHHt H1HAUATUSHHH(dH%(HD$1HH#HHP@H@8H$HGHT$HxH}IHI8HI|$L9t~Hh@HX8E1fDHt=HO HHHHRHtH9J sHRHuH9t H;N rIL9HuH\$dH3%(LuH([]A\A]E1ScaffoldVertexSimpleEntryExtractor/srv/scratch/marinovg/spades-cloudspades-paper/assembler/src/common/barcode_index/scaffold_vertex_index_builder.hppExtracting entry from pathTail threshold: Current tail: Current entry size: Result size: AWAVIAUATIUSHxH|$PdH%(H$h1H8HtH1HI<$IH@XH|$PI+G8I^HDŽ$HDŽ$HDŽ$HHHHIG@I+GHHHIW0I+W GHGHG(DŽ$?HDŽ$HDŽ$HHHD$@HGHGHG H$I<$HD$XH$H$HH(Ll$pHLLl$LHH|$xHD$8HtH8HHtH1H|$@H$HD$ )HD$ H$H$H9D$@wH|$8H9|$ gIO H$HI+G(HHHxHHZIO8HHH)HHHH@INHD$xHHT$pH!HB H+AI9F0`HD$8H+D$ HD$H8HHtH1IF(MfH\$HD$(ID$HHxH@PHHD$ID$HxHXHHD$H1HD$0/@HD$Lk(HCPH9D$r L9l$(HHID$Ht$HxH8H9uHD$0H9II]H$1HHH$LIMI0HN*HHHH1IHHHI9H9uIHpIUHIHL9xH8HHtH1)HH#T$pH|$ IFHz HH+PHD$0HHT$ HH$H$H9D$@H$Hu ?HHt6H{vLt$PHkHLHtHHLHHuH8HHtH1H|$XH$hdH3%(HD$PHx[]A\A]A^A_@H9l$HHC HD$`HtHELmHfDIUH|$XHHH@LHPHWHHHHHHH$HH{H5Ht$H{LeH$HsHL$LHv1LH$HH9tHnH$HH{H5H$H{LeH$HsHL$LH{1LH$HH9tHT$(HsSHT$8HSHT$@HS HF1HD$HHD$0HD$HHC(HEHD$8HD$@HH|$HtH$dH3 %(HH[]A\A]A^ÐLd$H$MH=utAT$HD$Ld$BAD$HT$LHH|$HtMtLHt$0UIT$HD$Ld$@IT$HD$Ld$CHCHCHC HC(@HD$HD$DHD$HD$0HHt$0HH|$HtHH|$PIHL9tLHH|$HHtMtLAWAVIAUATIUSIHHHHGH)I)HHH HH9HHT$HT$IHI^H$LLtHI}L9LHfFHHI9t3HtHrHHHHqtH=uHFHI9uIuHLH)HL9I\ thHLAHHH9t3HtHJHHHHKtH=uHAHH9uIImL)HH\MeI9up@AoIL9tSM|$MtH=uAGPAWuILPAG PAW uIILPL9u@ImHtHH$MuI]IEH[]A\A]A^A_ùHH7ILPAG fHH9HuH$E1 IuHI9_Block size: Constructed cluster storageCluster storage construction finishedAWAVIAUATUSHfHdH%(H$1H$L$HDŽ$ HDŽ$HD$H$HDŽ$$H$ID$0HDŽ$$)$$$$H$ID$h$)$ HDŽ$$H$HDŽ$HDŽ$HD$0HD$8HD$@HF HXLhI9HL$01E1HL$+@Lt$8IHLt$8I9HteHD$@I9t+MtHC IHC(HIFtH=u@fH|$HS LHLt$8I9Huf.LH+t$0HHHHHHT$H8IHtHHD$Ll$PIW8H=1L|$`LLd$XHD$xHD$pHD$HD$PHD$HD$hH8IHtHL|$8H\$0I9t#H{HtHI9uH\$0HtHH8IHtHH$L|$HT$ fo$HHEHEHEH$LE HE0Hl$ HEH$H]@HT$(fo$LHE@HEPHHE8H$E`HEpH\$(HEHH$HEXH$H}xIt$8o$LHExHDžHH$HDžH|$PHI|$8LLH$dH3 %(HH[]A\A]A^A_DH$PHH{H5L$0HsM?LL$0LHdLH$0LHH9tHH$PHH{H5 Ht$H{L$0HsMmLL$0LHNLH$0LHH9tHfH$PHH{H5%L$0HsM?LL$0LHCLH$0LHH9tHHD$0HD$HD$HHH|$HI|$8LH|$HH$0HLHH9tHHHH$0LHHH9tIHLHuHHhHSCzHATUHSHHILU0IHMHEHtYE1LMHHHHHHtparent()->child(node->position()) == nodeposition >= node->count()position < node->count()HLDOA8A@tjD9uRI@8AHL;Ht%HH9uopH9HujHȉWHH9tHD9AMcK8HuH8tHGHDLDOHH H5H=H H5H=H H5H=/srv/scratch/marinovg/spades-cloudspades-paper/assembler/ext/include/btree/safe_btree.hgeneration_ > 0AWAVAUATIUSH_IHHHdH%(HD$81ID$HI|$0LwL9L?MLDXE1DA9t]AML$HcHHL;Lv4_B HcAHHL9L:D9uA?8u.McJwD@H@8:DXE9tAID$ ED$(OIHHIu III9vMcMt$IPHoAD$IIJ<L!HHHHu HIT$8HHH9A|$HtjHL!A|$@HH8L@@tHHLL!Hp@HH8H9r>HIT$8>fDAEB`DHzLH9sHD$8dH3%(HH[]A\A]A^A_ÐID$ McD$(A|$@NHH9txWPI9|HHI$Lp LLt$(IHT$ LHD$H$HD$Hl$LHII>H98I|$ HHcPHHHH:L!H1HIT$8AD$@IL$0AL9Lq1ID$ AT$(MALHH!H9H H5H=H HBH)HA9IMcMt$A~9x+HH/H'H H5H=}1%lutails: Long edgesAWAVIAUATUSHHodH%(H$1H Lu HD$HE HtH@H|$0HHD$HH\$8HD$0L$HD$@D$PL$Lt$XHD$0LH$Ƅ$Ƅ$H$HD$8H$HD$@H$HD$HH$D$P$HD$XH$LH$H$H$HDŽ$HDŽ$L$LI}HH H9:H$] I}HcPHHHHHH#H 1H LH$Ƅ$HD$`HD$(HD$ 1HD$HE Ho8HH yHHu QH9LE(HcHHHH HRHH$L$H$H$H$$L$Ƅ$ Ƅ$(j89HH QHHHH\$`H\$pH|$hHL$x$L$ yHHM(H9HHL$`HoD$hH|$I|$HD$HT$H2H90H$~I|$HcPHHHHH#2H1H'LH$Ƅ$ I}I|$HD$HT$H2H90v$H$IOHHyHH!@HA8HH!HR H)H9T$sJIHD$(LBHQ@H$HH$I9IGLHxH@@HD$ H$HQ LA H+:HH FIHHH$H$L$H$$L$LE@H9HI(HH$Ho$LI}HD$HT$H2H90PLH$HE HLE(11I1HfDHI H)H9L$IHD$(HRLAxHHH9LE(h9`DPHH\$`Ht$hHH\$pH9HD$xL$HM($x9fDr9p hr9p~H$HH HHL$HL$HH\$`H\$pHt$hHD$xH$HH$HL$xH9Hc$ZH$HrHHt$`HoD$hH|$I}HD$HT$H2H90H$H;$$@8$ $8$(H8IHtHLH8HHtHH|$ fH*D$ H|$(fH*L$(H$dH3%(^ H[]A\A]A^A_HH\$pH\$xHD$hHM(DŽ$L$HHL$`BHH$H$H$H$L$HI($DBD9HrU@J9HAHH$H$H$HI(DŽ$L$HH$(J9H%H$9HvHHt$`LLAfHD$(fHƒHH H*XXDHD$ fHƒHH H*XD[9XHH$pL$0HLD$ H5H L1H A11LH$PHSH$PHHPH9pH$PHHH$`HHH}H$XHH@@H$XH$PH$PHCH9tH$0IL9tHuHMeL$PLHvLH$PHH9tHiDHHu@H$pHH5Ht$(H}L#H$PHuHL$PLHwLH$PHH9tHo@)$`HHHH H5H=}1H$PHIH9tLHHH$PHIH9tLH$0IL9tIHLH$PHIH9tHH111F1E1:HAUHGATUSHIHH9tgLn HHL}HEH9Ht0HHx LItAI}HHEIDH[]A\A]fDH(tHG HHx ueHLH[]A\A]LLtYHU 1H9tHHp LItH{HIEIEpHU H1[]A\A]H1MAWAVIAUAT`USHIHHL$IHC Hs01ID$0ID$8ID$@ID$ HC(ID$(HC8HH)HIHHt,HH9HHHC8Hs0II)HH9IL$0IL$8Il$@tHLHHCHHsLIL$8ID$ID$Ml$ID$HHCPHID$PHCXID$XA$-HkHM`HHE Lm8L+m01HC HE(HC0HC8HC@HC(LHHtHH9LHIHK0HK8Lk@HE8Hu0II)H9tHLHHEHLHK8HCHHEPHCPHEXHCXEHCHCI^LsHuHu'HmIHHL[]A\A]A^A_DHL$HLHCfHL$LLID$HHHLHLLHHHHHHAWAVAUATIUSHHdH%(H$1HH#Lt$PL|$ LHP@H@8HD$PHGHT$XHxI|$HHHHu@IWHD$(HD$0HT$8HT$@HHD$HtTLLL|$PHHHQHuHL$8H f.HHQHuHUXHL$@HD$0HT$HIVHD$`D$XHD$xHT$hHT$pHs@HHL$LLt$H$HHHBHuHT$hH$ fHHBHuHCXH<$HT$pHD$xH|$`HEXH8HD$HEH9tcLc@E1H8@Mt=HH HLHHRHtH9J sHRHuH9t H;N rIHH9uL)l$H4$LHt$0LH$dH3%(HD$u$HĘ[]A\A]A^A_ÐHCXH$2Ht$0HLHAWAVIAUATUSHdH%(H$1HH=Ht$ HT$(H@HH9HH#HL|$pLL|$HP@H@8HD$pIFHT$xHxHIFHHxHT$HHD$PHHD$@D$HHD$hHT$XHT$`Hu@HD$HtYLHHD$pHDHHQHuHL$XH f.HHQHuHUXHL$`HD$PHT$hHD$HDŽ$D$xHDŽ$HPH$H$Hs@H;H|$HL$8H|$8HD$HDHHBHuH$HT$DHHBHuL{XHD$H$L$H$HEHL}XH8H9tdLc@E1H8Mt=HH HLHHRHtH9J sHRHuH9t H;N rIHH9uM)Ht$H|$Ht$PH|$MfuGH$dH3%(iHĸ[]A\A]A^A_fDL{XHD$#fDIHD$H@ H9H|$ HHt$pH#HP@H@8HD$pIFHT$xHxIIFHt$(I8HxI}D$L9L`@Hh81Mt=HO HLHHRHtH9J sHRHuH9t H;N rHL9HuHfH*T$IH=H@HH9H|$ HL|$pLL|$H#HP@H@8HD$pIFHT$xHxI~Ht$(HHHT$HHD$PHHD$@D$HHD$hHT$XHT$`Hu@HD$HtWLHHD$pHHHQHuHL$XH f.HHQHuHUXHL$`HD$PHT$hHD$HDŽ$D$xHDŽ$HPH$H$Hs@HqH|$HL$8H|$8IH HHBHuH$L HHBHuLsXH$L$L$HEHLuXH8H9taLc@E1H8@Mt=HH HLHHRHtH9J sHRHuH9t H;N rIHH9uM)H|$LHt$PH|$MxWfI*L$^f(bHT$(Ht$ LIBHfHH H*XD$eLfHAL H*XLsXE1LHT$(Ht$ IeHT$(Ht$ LHxfH*\$HfHH H*XD$H|$Ht$PHHH=HH=HH5Hstatic const Config& config_common::config::get() [with Config = debruijn_graph::config::debruijn_config]cluster_storage::Cluster::MappingInfo cluster_storage::Cluster::GetMapping(const ScaffoldVertex&) constvoid cluster_storage::EdgeInitialClusterStorageBuilder::AddClustersFromBarcodeOnEdge(const EdgeId&, const BarcodeId&, size_t, cluster_storage::InternalEdgeClusterStorage&, cluster_storage::ClusterStorage&, std::vector&) constdebruijn_graph::EdgeId path_extend::scaffold_graph::EdgeGetter::GetEdgeFromScaffoldVertex(const path_extend::scaffold_graph::ScaffoldVertex&)barcode_index::BarcodeIndexInfoExtractor::const_intersection_iterator::reference barcode_index::BarcodeIndexInfoExtractor::const_intersection_iterator::operator*() [with barcode_entry_t = barcode_index::FrameEdgeEntry; barcode_index::BarcodeIndexInfoExtractor::const_intersection_iterator::reference = barcode_index::BarcodeIndexInfoExtractor::IntersectionData]void btree::btree_iterator::increment_slow() [with Node = const btree::btree_node >, std::less > >, std::allocator > >, 256> >; Reference = const restricted::pure_pointer >&; Pointer = const restricted::pure_pointer >*]btree::safe_btree_iterator::reference btree::safe_btree_iterator::operator*() const [with Tree = const btree::safe_btree >, std::less > >, std::allocator > >, 256> >; Iterator = btree::btree_iterator >, std::less > >, std::allocator > >, 256> >, const restricted::pure_pointer >&, const restricted::pure_pointer >*>; btree::safe_btree_iterator::reference = const restricted::pure_pointer >&]const Block& boost::dynamic_bitset::m_highest_block() const [with Block = long unsigned int; Allocator = std::allocator]boost::dynamic_bitset::~dynamic_bitset() [with Block = long unsigned int; Allocator = std::allocator]bool restricted::pure_pointer::operator==(const restricted::pure_pointer&) const [with T = omnigraph::PairedEdge]size_t cluster_storage::Cluster::MappingInfo::GetSpan() constSt11_Mutex_baseILN9__gnu_cxx12_Lock_policyE2EESt16_Sp_counted_baseILN9__gnu_cxx12_Lock_policyE2EEN13barcode_index20AbstractBarcodeIndexEN13barcode_index33AbstractBarcodeIndexInfoExtractorEN13barcode_index25BarcodeIndexInfoExtractorINS_14FrameEdgeEntryEEEN13barcode_index30FrameBarcodeIndexInfoExtractorEN13barcode_index12BarcodeIndexINS_14FrameEdgeEntryEEEN15cluster_storage20EdgeClusterExtractorEN15cluster_storage26IndexBasedClusterExtractorEN15cluster_storage28InitialClusterStorageBuilderEN15cluster_storage32EdgeInitialClusterStorageBuilderEN13barcode_index19TailThresholdGetterEN13barcode_index27FractionTailThresholdGetterEN13barcode_index36AbstractScaffoldVertexEntryExtractorISt3setImSt4lessImESaImEEEEN13barcode_index34ScaffoldVertexSimpleEntryExtractorESt19_Sp_make_shared_tagSt23_Sp_counted_ptr_inplaceIN13barcode_index27FractionTailThresholdGetterESaIS1_ELN9__gnu_cxx12_Lock_policyE2EESt23_Sp_counted_ptr_inplaceIN15cluster_storage26IndexBasedClusterExtractorESaIS1_ELN9__gnu_cxx12_Lock_policyE2EESt23_Sp_counted_ptr_inplaceIN15cluster_storage32EdgeInitialClusterStorageBuilderESaIS1_ELN9__gnu_cxx12_Lock_policyE2EESt23_Sp_counted_ptr_inplaceIN13barcode_index30FrameBarcodeIndexInfoExtractorESaIS1_ELN9__gnu_cxx12_Lock_policyE2EESt23_Sp_counted_ptr_inplaceIN15cluster_storage21InitialClusterStorageESaIS1_ELN9__gnu_cxx12_Lock_policyE2EESt23_Sp_counted_ptr_inplaceIN13barcode_index34ScaffoldVertexSimpleEntryExtractorESaIS1_ELN9__gnu_cxx12_Lock_policyE2EESt23_Sp_counted_ptr_inplaceIN13barcode_index19ScaffoldVertexIndexISt3setImSt4lessImESaImEEEESaIS7_ELN9__gnu_cxx12_Lock_policyE2EEC??_GCC: 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sHRHuH9t H;N rHL9HuIH5H@ H9[HH#$IHt$XHHP@H@8HT$xHD$pIIGHt$ HxI}HI8L9!L`@Hh8E1Mt=HO HLHHRHtH9J sHRHuH9t H;N rIL9HuL9IGH9$DHD$HD$ HD$H9D$0HD$HpH;pHt HD$ oHD$HHpH|$H$HD$HH5H(HHpH@H@ HX(HD$HHHXL$0LI|$H5H$It$HHL$LHQHH$HH9tLCHD$HpH;pt|Ht fo$HD$HHpHT$(Ht$8LHHT$ Ht$(LH9HGJ1l1t"Lj-L0@H@LLLHHH)HHHtHHtHXHHHXH8HHtHHHHHH9t:H_H)HHDI DHH?HtI9HuHHtHH{8HHPHHH9t7H_H)HHDIfHH?HtL9HuHHtHxHpH9t;H_H)HHDI fDHH?HtL9HuHpHtHudH34%(H@He[A\A]A^A_]DH@L@HIEtH@1H8M,H HfHHDž`L(L@LH@I~HpH5HIHLH5 HL#H IvHL LH,LH HH9tLwHFL1HLI~8LHPHHHHHHtH@HxHtWHILHHHtH H5H=HLL@IvI>HHX1I>H9IFIFtHHH8H HIH9tLoHItHL"HLXHHLHHHiHH\HHH@ 0SHH~H5H9t?*tuHC[1[SH_HHHtH=tkt3[fCPSuHHPC PS fDHHPC uHH[H@SH_HHHtH=tkt3[fCPSuHHPC PS fDHHPC uHH[H@USHHHH_HHtH=tkt;HH []CPSuHHPC PS fDHHPC uHHPUSHHHH_HHtH=tkt;HH []CPSuHHPC PS fDHHPC uHHP=== Stack Trace ===AWAVH5AUATH=USHXdH%(H$H1HHH@HHr{87sCH=HHHHÉIHōCL%L=Ml*DsCH=HHL9H]HtbHH=HHI$H@IH{8uHH H@0L9tHwI$HxLw LH$HdH3%(uKHX[]A\A]A^A_HHH H@0H9H idx < size()ptr_.get() == rhs.ptr_.get()end_pos >= start_pos General Backward reference transition broken transitions, total breaks;2 !`>    f?Q+d    ypOZ$R     Ur 9:?BB'X9+&&+&+'*(+(,))+)+*;QD!}^]g   UIHHHAUATSIHLPLXt&)`)p)U)])e)m)u)}dH%(H(1HFHHDž Dž0H)HELl$HH0IH LAHcID$HHI$wCHu}AUAT$H(dH3<%(I\$Lu\He[A\A]]f.H1LHI$IT$HLHHI$@HtUSHHHHtfDHHHuHEH}1H0HH}HEHEH9tH[]fH[]USHHHHtfDHHHuHEH}1H0HH}HEHEH9tH[]fH[]HWHH9t\ATUISHXH)HHlHH8HtH9HuI$Ht[]A\Hf.[]A\Ht HUSHHHHtfDHHHuHEH}1H0HH}HEHEH9tH[]fH[]AWAVIAUATIUSHHHOHHI)H)HHH4IH9LH$H]HMMH$III)MtHII9t LHLHL$L$HL$L$IODM)L9tLLLIMHtHLmLuL}H[]A\A]A^A_L<FfDHH9-HuME1E1>Ht3ATIUSHHsLHkHHHu[]A\@HtKATIUSHHsLH{ HC0HkH9tHHHu[]A\f.Ht[ATIUSHHsLH{PHC`HkH9tH{0HC@H9tHHHu[]A\AWAVAUATIUSHHHHwI$ I$0H9tI$I$H9tI$I$H9tI$I$H9t&@H;HCH9tH H9uI$HtHI$I$H9LL)IHILHI!IMiIfDHhHxH9tHHHXH9tH(H8H9tHHH9tHHL}XH]PI9tH;HCH9tH I9uH]PHtHL}@H]8I9t&H;HCH9tH I9uH]8HtHL}(H] I9t&H;HCH9tH I9uH] HtHL}H]I9t&H;HCH9tH I9uH]HtHM9Lt IƘI$HtHA$xI$ I$ I$ I$ H9tI$ I$ H9tI$` I$p H9tI$@ I$P H9tI$ I$0 H9tI$ I$ H9tI$ I$ H9tI$ I$ H9tI$x I$ H9tI$X I$h H9tI$P I$` H9tI$0 I$@ H9tI$ I$ H9tA$tI$I$H9tI$I$H9tI$I$H9tI$hI$xH9tI$@I$PH9tI$ I$0H9tI$I$H9tI$I$H9tI$I$H9tI$I$H9tI$I$H9tI$`I$pH9tI$@I$PH9tA$I$xI$H9tI$XI$hH9tI$I$H9tI$xI$H9tI$I$(H9tI|$xI$H9tI|$8ID$HH9tI|$I(L9tH[]A\A]A^A_H[]A\A]A^A_fI$I$(H9tI$I$H9tI$I$H9tI$I$(H9tI$I$H9tI$I$(H9tI$I$H9tI$I$H9H>I$I$I$I$H96,H=SHtot+[fGPWuHPC PS HPC uHH[H@AWAVAUATUSHHHHuH?IHI)H)HHH IH9LHT$H}HuLxHT$IIMt oAEH9t8LHHtoHHH9uHGHH)HHM| H9t5HLfDHtoHHH9uHH)HM|HtLeL}LuH[]A\A]A^A_f.HIHH9HuAE1E1 AWAVAUATUSHHHHuH?IHI)H)HHH IH9LHT$H}HuLx HT$IIMtoAEoBAEH9t?LHHtooBAH H H9uHG HH)HHM|@H9t=HLDHtooBAH H H9uH H)HM| HtLeL}LuH[]A\A]A^A_ÐHIHH9HuA E1E1AWAVIAUATHUSHIHHHHGH)H)HHH^L4L9iHI ILIwI?HEHEHEHH)HD$HHt$HH9HH|$IwI?HT$HEHEHH9HUtAHHfHtooBAH H H9uH H)HHD HEM$I|$I9LMxHH LL)HHHH!HDvM\L@HtDH@H@HL LHLRLHLPLJLRLHLPLJHHL9uHvH9Il0teHCHH)HHHTfDHt.HHHEHCHCHEHCHCHEHHH9uI9t0MxL)HI\IH9HtI9LuI<$HtKvM,$Il$IDID$H[]A\A]A^A_AK 0 && num_blocks() > 0m_check_invariants()HAUATIUSIHHHsLHSHHkHу?H{0HC8Hs@H)HH)HH9wHHHH9t$H H5H=yDHtHHHjH[]A\A]H{0HC8LHH9tHpcfH H5H=AUATUSHHH,HttH]ILC%DHHtpL@1HHLHwH9uXL9uHCI9D$uI$HCIL!L!H9tI$L!L#kL9u&HH[]A\A]H1[H]A\A]H H5H=HO(E1HHt)uJHHItEAu HHHwHcG HIH9tHHHoGfIA9uHHH1Ht(u/HHHtWu HHf.HSHHHH(HWH9t1H;Ht'H$HT$HCD$C HC(H@HHHHC[DHH@DP1D9t\ 2LKAAAAIcHHL9Ls1B4HcAHHL9L0rfAD9uց?8u%HcH{PH@8u?DPA9tHCS HHHC[EAf.ASD6HHCS HATUHSHHILU0IHMHEHtYE1LMHHHHHHtHt$HdH34%(HD$HX[]A\A]A^A_I9tuLs L} M9}HMHLx fI9uHHLp MHt$H<$HT$(H|$Ht$H<$HLHHH4$H HH@H9?HFHt$HxHD$ H@@HHHII@Lt$LL<$HXHLLt$IGHxL`8IGLt$HxLHD$ HhHIGLLt$HxHx8LIIIGHt$HxHD$ H@HHt$Lp IGHxHD$ H@HL;p L9LHE H9C Lu HK L9I9I9u/L9s%u fDL9sHI9HHH uI9r pHHL$ HL$ Lp HI9ssI9uI9uZI9wUxI9oDfH$H@HD$ HxHt$H<$5f.I92L9)Mu LLI9L9HHH H5H=Ht$H<$L9t7HE H9C H;M HtHHHIH>HIHILHHt$H<$HHD$H8HtHHt$H<$HH/srv/scratch/marinovg/spades-cloudspades-paper/assembler/ext/include/btree/btree.hnode->parent()->child(node->position()) == nodeposition >= node->count()position < node->count()HLDOA8A@tjD9uRI@8AHL;Ht%HH9uopH9HujHȉWHH9tHD9AMcK8HuH8tHGHDLDOHH H5H=H H5H=H H5H=Verification of expression 'is_initialized()' failed in function ''. In file '' on line . Message 'Config not initialized'./srv/scratch/marinovg/spades-cloudspades-paper/assembler/src/common/pipeline/config_singl.hppAUATUSHdH%(H$1=H\$ HH{H5H{H5H{H5H{H5qH{H5 H{H5]H{H5 H{!H5 HHH5HH5HHHsHHT$H4$H=IHH@MMUA|$8At$CLHH<$HEH9tHsHHT$H4$H=IHH@MMA|$8YAt$CLHH<$HH9tH=H==CHt1H$dH3 %(H Hĸ[]A\A]DH=tHHHH=HH HHH@HHHHH`HHHHHXHH HHHHH HHH HH HHHHHH HH HH HHH HH HHH(HH HHH HHhHHH HHHHHHHH HHHHH HH HHH(HH HHH@HH HHH HH HHHPHHHHHHHHHHHHH HHH@HHHHHHHHHHHHHHHHH HHHHHHH5H=BLI$H H@0H9PLCfDLI$H H@0H9L{H H5H=!H<$HIH9tHLI/srv/scratch/marinovg/spades-cloudspades-paper/assembler/ext/include/btree/safe_btree.hgeneration_ > 0AVAUIATUISH_HH@dH%(HD$81fID$HKIT$0LZL9L2MvLDW1D9t]MD$HcHHL;Dv6jf.1HcAHHL;DC9uՁ??u0HcHzf.wH?DWA9tAHcI|$ HAt$(HIHIiE@u III9HcM\$HHoAD$ID$ H<L!HHHHu H"IT$8HHH9A|$HtjHL!A|$@HH8L@@tHHLL!Hp@HH8H9r>HIT$86fDAɉAqWDHzLH9sHD$8dH3%(LH@[]A\A]A^IcT$(HHfDA|$@FHH9txWPI9|HHI$1HH H@ Ht/0@HHIt@APu HHIT$ HL$(LHD$H$HD$Hl$LHII>H981I|$PHHcPHHHH:L!H1HIT$8AD$@HH!H9H H5H=MH HBH)HID$ AD$(1E11A9bIM\$pAuCIHHrL@HHu IHI|$ At$(LImA~9xHHHH H5H=}E11%lutails: Long edgesAWAVAUATUSHHXH_dH%(H$H1H HD$ HC HD$HC HtH@L{ H$IL$H$L$HDŽ$HDŽ$DŽ$H$LH$Ƅ$ Ƅ$(H$H$H$H$H$H$H$$$H$H$H$HH$0L$XH$PL$8IHHD$HDŽ$0HDŽ$@LH$IH$HD$I<$H98\H$%HD$HxHcPHHHHHH#H31H3H|$H$Ƅ$ H$HD$0HD$(HD$8HS HH{1HHHDG!HHHDWHuHH9LK(YIcHHHH0H@H$HHD$HH$0L$8H$@H$PD$XH$`Ƅ$pƄ$xHHHDwxHHIA|$u HHL9H$`H$8LL9{HIiHT$xT$xHD$pH$P$XH$`HRHH$8L98H$8HD$HxHcPHHHHH#:HM1HH|$H$hƄ$pH$H$L_L9tGHKIt9HD$`HT$hH$D$h$H$H@HH$H$`H$8L_L9 HgIHT$XT$XHD$PH$P$XH$`HRHH$8H;$$ H$HUH8HrHH!Hz8HH!H@ H)H9D$ sMHEHD$0HHHB@H$8HH$0H9 HEHt$HxH@@HD$(H$HA HH 0@HHI_@EpHHIF@ED$u HHL9H$H$LL9HIHT$HT$HHD$@H$$H$HRHH$L9H|$H$HS HHLK(1E1I1H@H$PH;$#$9$XH$HQ LI H DE HHHE@ HIHHHDŽ$HDŽ$L$H$$L$EDOu HHH9HI(bHH$Ho$H|$8IHD$HxI<$H98 H$H;$h$ 8$p$(8$xH8IHtH H8HHtH H|$(9 fH*D$(H|$0 fH*L$0H$HdH3%(^~ HX[]A\A]A^A_fH$PL9D9$X@HR H)H9T$ {HUHD$0H@HJ)H$L93D9$%@HׄDGHHׄDwIE1E1HC(HHHHIDAT$t uA<$M$DHHL$HHfDh1ED9MB AAAAIcHHL;Tv5DF DDLcAIIN9TAD9uA?8uMcJt@DhE9D@H@8tHAH$`1LzHH$P$XHt0 HHH> vu HHH9IcL$8HHo)$@VfDEEf.AsED9AL'ML$LfDPE1DA9CAHcHHL9Ls5A 0HcAHHL9LA9uӁ?8uHcHxDPA9pH@8tH$L!LY1H$$Mt4A$HI$HHIu I$II90HcL$HHo)$AEEA9DL'ML$HLfDPE1DA9CAHcHHL;Lv5A 0HcAHHL9LA9uӁ?8uHcHxDPA9pH@8tH$`L!LY1H$P$XMt4A$I$HH>Iu I$II9HcL$8HHo)$@AEEA9DI@Ep9IDE1E1HQ(HHEH omnigraph::MappingPath::operator[](size_t) const [with ElementId = restricted::pure_pointer >; size_t = long unsigned int]bool restricted::pure_pointer::operator==(const restricted::pure_pointer&) const [with T = omnigraph::PairedVertex]barcode_index::BarcodeIndexInfoExtractor::const_intersection_iterator::reference barcode_index::BarcodeIndexInfoExtractor::const_intersection_iterator::operator*() [with barcode_entry_t = barcode_index::FrameEdgeEntry; barcode_index::BarcodeIndexInfoExtractor::const_intersection_iterator::reference = barcode_index::BarcodeIndexInfoExtractor::IntersectionData]void btree::btree_iterator::increment_slow() [with Node = const btree::btree_node >, std::less > >, std::allocator > >, 256> >; Reference = const restricted::pure_pointer >&; Pointer = const restricted::pure_pointer >*]btree::safe_btree_iterator::reference btree::safe_btree_iterator::operator*() const [with Tree = const btree::safe_btree >, std::less > >, std::allocator > >, 256> >; Iterator = btree::btree_iterator >, std::less > >, std::allocator > >, 256> >, const restricted::pure_pointer >&, const restricted::pure_pointer >*>; btree::safe_btree_iterator::reference = const restricted::pure_pointer >&]static const Config& config_common::config::get() [with Config = debruijn_graph::config::debruijn_config]const Block& boost::dynamic_bitset::m_highest_block() const [with Block = long unsigned int; Allocator = std::allocator]boost::dynamic_bitset::~dynamic_bitset() [with Block = long unsigned int; Allocator = std::allocator]size_t Range::size() constbool restricted::pure_pointer::operator==(const restricted::pure_pointer&) const [with T = 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C@tufH~HHH!H9t|Ht$(HHHH HHHHHH)H)H9HHGHw.H|$HsfDHHD$vf.D$vfDHHqHH|$HHtH|$HwHH|$XHHtHAWAVIAUATIUSH0HdH%(H$1HHT$L`(HHHEHH}HEIEHD$@IEHHD$HtH=`@Ll$@LLH|$HHtHEH5HP IH8IHtHIxH(HD$H=IHID$HI|$L|$@Hl$HI$pEMFfHT$Ht$LH|$HHtI$H5LP HHLLl$@HT$ HHH\$ IELHCAoE HCIEC HC0HCHS@HCHLs8C@HC`HSPHSXIuHHTHL$(LLt$(H fHHQHuHKPHHHQHuIU`HKXHCHHS`HSxIEhHǃL{pCxHǃHHIHChHt]HL$0LL|$0H fDHHQHuHHHHQHuIHHHHHǃǃHǃHHIHt_HHL$8H|$8H@HHQHuHHHHQHuIHHHH|$HHtLHH$dH34%(HH[]A\A]A^A_D@fDHD$pHHD$HD$H5'HxHD$fHxI4$HD$Ld$PLHt$HpLL$PH|$LHH|$PIL9tH|$EDEH|$HHHtHHIHLH|$HHtLHHHHIHsHLHHLIH|$PIHL9tH|$H|$HHHtL{HUHAWAVAUATIS0IHhHpL6dH%(HE1HHHCHHHCIHEIHIHH=AGAGHI(HHC?HH51HMHCL{ tJH=AGLs(LHLHC$DvHLs(HCHHH@ H9ZH L M}HxHHEHHALyHL=HQHMHHHUMHAIETAIUHLxHMpH}PHuAVLEH(H}H HtI$ID$(H}IHIEHMuHUHIEMHGH5IUI} IuIEHH}H@ Ml$H9HM4$tH}HHudH34%(L,He[A\A]A^A_]fDHGIUI} IEGpHuFHIUIE Ml$IE]HI(HHCKHCHC Ls(HHC@LH5H}IH5HHEMHCHC Ls(fAGHCHC H}IHtH}HLIH}IHuԐ@f.AWAVAUATUSHHHXL$H|$@L$dH%(H$H1IWHX LL|$`L$H$H` H:HLLLH$H$LLHHD$hL$H3LH$HKLLHHD$PIHH H$ LHDŽ$0Ƅ$8H$ Ƅ$9H(H$(H$0HHD$ H8IHtH H8IHtHU H$@HL$ HHHIHD$HH$LHH$H$H$HH$tH=T@H$H$HT$HHHHHD$8H$HtH8IHtHL$pHL$ HT$8HLH8IHtHL$HT$PHt$LL|$XHL$H}fo$LLLsHDŽ$H(HDŽ$HDŽ$H$H$$H$H$H$H$HD$@H$L$ HH@H@ID$H9H$L$HD$H$pHD$IGHD$H$HD$(H$HD$0qH8IHtHH8IHtHvfDHHID$H9HC8H$HC@HH$^H= @HS0HC(HH$H$HBtHT$H|$LHH$HtH$Ht$pH8IH3HLH|$H5H|$(IwM6L$LHfLH$H;|$0tLD@HC(H$HC0HH$@fHC(H$HC0HH$H=tH@LH|$H5 $pH$xH|$H|$(IwM6L$LHcLH$H;|$0tLdLH|$H5H|$CPH|$(IwM6L$LHdLbH}H|$XH$LH\$8H$PHH$ H{pH$H{8HH$HtH$PH|$HH\$ H{8HH$H$H9tL$IuLL$LHWLH$IL9tLL$LI}H5L|$8LI}HH5HILHLH5HL$IuM$$LL$LHTLH$IL9tLfL$LH$HI}H5HL$IuM$$LL$LHOLH$IL9tLL$LH$pHL$ H$o$HDŽ$HDŽ$H$H$Hq8)$HDŽ$H$H$HIHD$8H$H$I}H5HLL$IuLM$$L$LHNLH$IL9tLf.HH5H=SHLHD$@H8HtH}H|$XH$LL|$8H$PIH$ IpH$I8LH$HtH$PH|$HL|$ I8LH|$PH|$hL$H$I9t&H}HE(H9tH}HtH8H$HtHT$`H$HH9tHHH$HHtH$HHHHH HH$HHHHHD$(H$HH9HL4HHHHLH$IHL9tH|$8HL9H$IHL9tHH$IHL9WMHGHHH@`HHH@ SHH~H5H9t?*tuHC[1[SHH~H5H9t?*tuHC[1[SHH~H5H9t?*tuHC[1[SHH~H5H9t?*tuHC[1[SHH~H5H9t?*tuHC[1[SHH~H5H9t?*tuHC[1[SHH~H5H9t?*tuHC[1[0 (0xHPSHHoHS0H@oCHP8@oC @([basic_string::_M_construct null not valid/srv/scratch/marinovg/spades-cloudspades-paper/assembler/src/common/modules/path_extend/read_cloud_path_extend/statistics/path_scaffolder_analyzer.cpp/srv/scratch/marinovg/spades-cloudspades-paper/assembler/ext/include/boost/optional/optional.hppSetting containment index threshold to SHPHHHPHSHPHSHPHSHHP toH=u=BHS HP(HS(HHP0tBHS0C8@@HP8HS@HPH[@BHK(HS HHP(HH0HQt@HS HP(HS(HHP0tH=tH=== Stack Trace ===AWAVH5AUATH=USHXdH%(H$H1HHH@HHr{87sCH=HHHHÉIHōCL%L=Ml*DsCH=HHL9H]HtbHH=HHI$H@IH{8uHH H@0L9tHwI$HxLw LH$HdH3%(uKHX[]A\A]A^A_HHH H@0H9HAborted by assert: AUATIUSH5HH=HHIH=LDHHLength1Length2LongEdgeDistScorePathDistanceEstimatorNo unique edgesthis->is_initialized()Different pathsFirst edge: [, ]Second edge: General Length: covered edges reference transitionsGraph contains vertices and edgesFalse negative edges: Distance: Score: Distance undefinedUIHHHATSIHL`Lht#)p)M)U)])e)m)u)}dH%(H81HFH HDž Dž$0H)HEH\$H(H@HHH0AIT$LHI$HcHH8dH3<%(Lu He[A\]AWAVAUATIUSHHFHH|$HnH9H$qLs Lm M9M9H9$M|$M9rsH9$tHLp HI$M9rM9w&HLh HID$M9v_L9uIl$ID$Lm I$Il$I$Ls M9jHD$Ao$AoD$@HD$H[]A\A]A^A_DH;$uM9sL9tSM9H$fsfH9nt{HMHID$Lh mH9$cGfH<$HI$ID$GH9nHtH$Lm Lp M9tH~HMHI$Lp cUSHHHHtfDHHHuHEH}1H0HH}HEHEH9tH[]fH[]Verification of expression 'is_initialized()' failed in function ''. In file '' on line . Message 'Config not initialized'./srv/scratch/marinovg/spades-cloudspades-paper/assembler/src/common/pipeline/config_singl.hppATUSHdH%(H$1=H\$ HH{H5H{H5H{H5H{H5qH{H5 H{H5]H{H5 H{!H5 HHH5HH5HHHsHHT$H4$H=HH<$HEH9tHsHHT$H4$H=HH<$HH9tH=H==Ht-H$dH3 %(HHİ[]A\H=tHHHH=HH HHH@HHHHH`HHHHHXHH HHHHH HHH HH HHHHHH HH HH HHH HH HHH(HH HHH HHhHHH HHHHHHHH HHHHH HH HHH(HH HHH@HH HHH HH HHHPHHHHHHHHHHHHH HHH@HHHHHHHHHHHHHHHHH HHHHHHH5H=FH H5H=!H<$HIH9tLHHH'8=  USHHHHtfDHHHuHEH}1H0HH}HEHEH9tH[]fH[]HWHH9t\ATUISHXH)HHlHH8HtH9HuI$Ht[]A\Hf.[]A\Ht HAWAVIAUATIUSHHHOHHI)H)HHH4IH9LH$H]HMMH$III)MtHII9t LHLHL$L$HL$L$IODM)L9tLLLIMHtHLmLuL}H[]A\A]A^A_L<FfDHH9-HuME1E1>H=SHtot+[fGPWuHPC PS HPC uHH[H@HHHHt HSHHHHtH߾ [HHHHt HSHHHHtH߾ [_S      p  n  'Q%Y(h'`-Dpg!!K> ?        6  :?Q/;%1// + /  +   .   /+h u /!cp9I\n7\_PN  ;  8  +       0  ,6f;9+L?Q%#U0"   ! 6    8  0IB  /  *    K5(?7'uNHJ  :    6   % -o,QD!}^]g   HHGH0Ht HHGH Ht AUATIUSHH_Hu%DmHLMtxHk0L#HtH=mHk HtH=uEPUuHEHPE PU uHEHPHLMuIEI}1HIEIEH[]A\A]EPUfHEHPE PU JHEHP;HEHPE HEHPO@HEHPE SHH0H{H9t [@[HAUATIUSHHHsLHk(LcHtH=t$mt]HLMuH[]A\A]fEPUuHEHPE PU uHEHPfDfDHEHPE USHHHHo`HGHtH=tqmHs8H{(HHCH[ HtH=tkt\H[]DCPSuHHPC PS AfDEPUuHEHPE PU IDHHPC uHHH@H[]fDHEHPE %HEHPHAUATIUSHHHsLHk(LcHtH=t$mt]HLMuH[]A\A]fEPUuHEHPE PU uHEHPfDfDHEHPE Ht3ATIUSHHsLHkHHHu[]A\@HtKATIUSHHsLH{ HC0HkH9tHHHu[]A\f.Ht[ATIUSHHsLH{PHC`HkH9tH{0HC@H9tHHHu[]A\AWAVAUATIUSHHHHwI$ I$0H9tI$I$H9tI$I$H9tI$I$H9t&@H;HCH9tH H9uI$HtHI$I$H9LL)IHILHI!IMiIfDHhHxH9tHHHXH9tH(H8H9tHHH9tHHL}XH]PI9tH;HCH9tH I9uH]PHtHL}@H]8I9t&H;HCH9tH I9uH]8HtHL}(H] I9t&H;HCH9tH I9uH] HtHL}H]I9t&H;HCH9tH I9uH]HtHM9Lt IƘI$HtHA$xI$ I$ I$ I$ H9tI$ I$ H9tI$` I$p H9tI$@ I$P H9tI$ I$0 H9tI$ I$ H9tI$ I$ H9tI$ I$ H9tI$x I$ H9tI$X I$h H9tI$P I$` H9tI$0 I$@ H9tI$ I$ H9tA$tI$I$H9tI$I$H9tI$I$H9tI$hI$xH9tI$@I$PH9tI$ I$0H9tI$I$H9tI$I$H9tI$I$H9tI$I$H9tI$I$H9tI$`I$pH9tI$@I$PH9tA$I$xI$H9tI$XI$hH9tI$I$H9tI$xI$H9tI$I$(H9tI|$xI$H9tI|$8ID$HH9tI|$I(L9tH[]A\A]A^A_H[]A\A]A^A_fI$I$(H9tI$I$H9tI$I$H9tI$I$(H9tI$I$H9tI$I$(H9tI$I$H9tI$I$H9H>I$I$I$I$H96,Ht3ATIUSHHsLHkHHHu[]A\@USHHHHHdH%(HD$81HHHP(Ht$HHl$(HL$8dH3 %(u HHH[]AUATIUSHH_(Hu%DmHLMteHs(H{L#HkHtH=u‹EPUuHEHPE PU uHEHPHLMufIE I}1IHHI}IEIEL9tDH[]A\A]DHEHPE &HEHPz@H[]A\A]AWAVAUATLoUSIHHH_Hu f.HSHtHL{ HLuHSHuI9\$t9HILx HHLuHH1[]A\A]A^A_@IM9A0HHEHC HEHHC(tH=uB@LLHDID$(HHغ[]A\A]A^A_Ia@fL(Iv HD]AUATE1USHHH?HnHt.H}HCIH@1HKHsHH HmHuH[]A\A]@L HmIHtH}I$HH@1HsHHH8uHHtHt$Ht$IL+VHC0Lk0HHMtH;H0H9tHHUSHHHHtfDHHHuHEH}1HHEHEH[]SHH0H{H9t [@[/srv/scratch/marinovg/spades-cloudspades-paper/assembler/src/common/assembly_graph/core/order_and_law.hppptr_.get() == rhs.ptr_.get()AWAV1AUATUSHLfLfLHwHL,MI]IIHK(2f.HHHH(1IHHHwI9I9uHCH9FuHHCL!L!H9t)Ht$H<$Ht$LHCH<$H#L!H9uDHC H9FuHVHCHH4$H!H!H9t;H4$HH#kH#FH9t"H H5H=IEHu1H[]A\A]A^A_AUAT1USHLNLGLIHH,HH]IHK(fHHtpHH1HHHII9uYI9uL;KuHHCIL!L!H9tII$L!L#kL9u'HEHtH[]A\A]fDH1[]A\A]H H5H=AUATE1USHHH?H^HtD oCIH1HM@HCLeID$HuHEH HHuH[]A\A]fDL HIHt oCHH1@I$HCHAHuHEHH8uHHtHt$Ht$ILm-HE0Lm0HHMtH}H0H9tHHUSHHHHtfDHHHuHEH}1HHEHEH[]SHH0H{H9t [@[AUATE1USHHH?H^Ht8H{IHC@1HMID$@LeID$@HuHEH HHu#H[]A\A]f.L HIHtH{I$HHC@1HA@HuHEHH8u@HHtHt$Ht$ILmEHE0Lm0HHMtH}H0H9tHHAWAVAUATUSHHHHuH?IHI)H)HHH IH9LHT$H}HuLx HT$IIMtoAEoBAEH9t?LHHtooBAH H H9uHG HH)HHM|@H9t=HLDHtooBAH H H9uH H)HM| HtLeL}LuH[]A\A]A^A_ÐHIHH9HuA E1E1HAUATIUSHHHsLHk@LcHtH=t|mHk0HtH=t&mHLMuH[]A\A]ËEPUuHEHPE PU uHEHPfDEPUuHEHPE PU eHEHPVfDHEHPE f.HEHPE  AWAVAUATLoUSIHHH_Hubf.HSHtHL{ HLuHSHuI9\$t9HILx HHLuHH1[]A\A]A^A_@IM9A`HHEHC HEHC(HEHHC0H=uv@HEHC8HE HHC@t@HE(E0LLHCPDHCHHE8HCXID$(HHغ[]A\A]A^A_ÐI!@HU HEHHC8HS@HBt@LHEHC8HE HHC@^H=LHIv HD/srv/scratch/marinovg/spades-cloudspades-paper/assembler/ext/include/boost/dynamic_bitset/dynamic_bitset.hppsize() > 0 && num_blocks() > 0m_check_invariants()HAUATIUSIHHHsLHSHHkHу?H{0HC8Hs@H)HH)HH9wHHHH9t$H H5H=yDHtHHHjH[]A\A]H{0HC8LHH9tHpcfH H5H=USHH_HtQL@HCAHtHHK I9rHCE1HuEIu1HI9HGIGH[]fH_1H9_HtHHILEHH HSHw HHH{Ht[[AWAVIAUAT(USHHIHIHC HsIEIEImIE HAEHkHtKM(HHE HC EHCHCI\$LcHuHu"HmIHuHL[]A\A]A^A_@LHLHC@LLLIEgHLLHHAWAVIAUAT0USHHIHIHC ID$ HC(HID$(tH=@HsID$ID$Il$HA$HkHtfM0HHE HC HE(HHC(tH=tN@EHCHCI]LkHuHu3HmIHuHL[]A\A]A^A_D@f.LHLHC@@fDLLLID$*HLLHHAWAVIAUAT8USHHIHIHC ID$ HC(HID$(tH=@HC0HsID$ID$Il$ID$0HA$HkHtnM8HHE HC HE(HHC(tH=tU@HE0HC0EHCHCI]LkHuHu2HmIHuHL[]A\A]A^A_@@f.LHLHC@@fDLLLID$#HLLHHHATUHSHHILU0IHMHEHtYE1LMHHHHHHtT$(HsSHT$8HSHT$@HS HF1HD$HHD$0HD$HHC(HEHD$8HD$@HH|$HtH$dH3 %(HH[]A\A]A^ÐLd$H$MH=utAT$HD$Ld$BAD$HT$LHH|$HtMtLHt$0UIT$HD$Ld$@IT$HD$Ld$CHCHCHC HC(@HD$HD$DHD$HD$0HHt$0HH|$HtHH|$PIHL9tLHH|$HHtMtL/srv/scratch/marinovg/spades-cloudspades-paper/assembler/ext/include/btree/btree.hnode->parent()->child(node->position()) == nodeposition >= node->count()position < node->count()HLDOA8A@tjD9uRI@8AHL;Ht%HH9uopH9HujHȉWHH9tHD9AMcK8HuH8tHGHDLDOHH H5H=H H5H=H H5H=/srv/scratch/marinovg/spades-cloudspades-paper/assembler/ext/include/btree/safe_btree.hgeneration_ > 0AWAVAUATIUSH_IHHHdH%(HD$81ID$HI|$0LwL9L?MLDXE1DA9t]AML$HcHHL;Lv4_B HcAHHL9L:D9uA?8u.McJwD@H@8:DXE9tAID$ ED$(OIHHIu III9vMcMt$IPHoAD$IIJ<L!HHHHu HIT$8HHH9A|$HtjHL!A|$@HH8L@@tHHLL!Hp@HH8H9r>HIT$8>fDAEB`DHzLH9sHD$8dH3%(HH[]A\A]A^A_ÐID$ McD$(A|$@NHH9txWPI9|HHI$Lp LLt$(IHT$ LHD$H$HD$Hl$LHII>H98I|$ HHcPHHHH:L!H1HIT$8AD$@IL$0AL9Lq1ID$ AT$(MALHH!H9H H5H=H HBH)HA9IMcMt$A~9x+HH/H'H H5H=}1%lutails: Long edgesAWAVIAUATUSHHodH%(H$1H Lu HD$HE HtH@H|$0HHD$HH\$8HD$0L$HD$@D$PL$Lt$XHD$0LH$Ƅ$Ƅ$H$HD$8H$HD$@H$HD$HH$D$P$HD$XH$LH$H$H$HDŽ$HDŽ$L$LI}HH H9:H$] I}HcPHHHHHH#H 1H LH$Ƅ$HD$`HD$(HD$ 1HD$HE Ho8HH yHHu QH9LE(HcHHHH HRHH$L$H$H$H$$L$Ƅ$ Ƅ$(j89HH QHHHH\$`H\$pH|$hHL$x$L$ yHHM(H9HHL$`HoD$hH|$I|$HD$HT$H2H90H$~I|$HcPHHHHH#2H1H'LH$Ƅ$ I}I|$HD$HT$H2H90v$H$IOHHyHH!@HA8HH!HR H)H9T$sJIHD$(LBHQ@H$HH$I9IGLHxH@@HD$ H$HQ LA H+:HH FIHHH$H$L$H$$L$LE@H9HI(HH$Ho$LI}HD$HT$H2H90PLH$HE HLE(11I1HfDHI H)H9L$IHD$(HRLAxHHH9LE(h9`DPHH\$`Ht$hHH\$pH9HD$xL$HM($x9fDr9p hr9p~H$HH HHL$HL$HH\$`H\$pHt$hHD$xH$HH$HL$xH9Hc$ZH$HrHHt$`HoD$hH|$I}HD$HT$H2H90H$H;$$@8$ $8$(H8IHtHLH8HHtHH|$ fH*D$ H|$(fH*L$(H$dH3%(^ H[]A\A]A^A_HH\$pH\$xHD$hHM(DŽ$L$HHL$`BHH$H$H$H$L$HI($DBD9HrU@J9HAHH$H$H$HI(DŽ$L$HH$(J9H%H$9HvHHt$`LLAfHD$(fHƒHH H*XXDHD$ fHƒHH H*XD[9XHH$pL$0HLD$ H5H L1H A11LH$PHSH$PHHPH9pH$PHHH$`HHH}H$XHH@@H$XH$PH$PHCH9tH$0IL9tHuHMeL$PLHvLH$PHH9tHiDHHu@H$pHH5Ht$(H}L#H$PHuHL$PLHwLH$PHH9tHo@)$`HHHH H5H=}1H$PHIH9tLHHH$PHIH9tLH$0IL9tIHLH$PHIH9tHH111F1E1:HHATUHSHHILU0IHMHEHtYE1LMHHHHHHt::reference_type boost::optional::get() [with T = long unsigned int; boost::optional::reference_type = long unsigned int&]boost::optional::reference_type boost::optional::get() [with T = restricted::pure_pointer >; boost::optional::reference_type = restricted::pure_pointer >&]barcode_index::BarcodeIndexInfoExtractor::const_intersection_iterator::reference barcode_index::BarcodeIndexInfoExtractor::const_intersection_iterator::operator*() [with barcode_entry_t = barcode_index::FrameEdgeEntry; barcode_index::BarcodeIndexInfoExtractor::const_intersection_iterator::reference = barcode_index::BarcodeIndexInfoExtractor::IntersectionData]const Block& boost::dynamic_bitset::m_highest_block() const [with Block = long unsigned int; Allocator = std::allocator]boost::dynamic_bitset::~dynamic_bitset() [with Block = long unsigned int; Allocator = std::allocator]void btree::btree_iterator::increment_slow() [with Node = const btree::btree_node >, std::less > >, std::allocator > >, 256> >; Reference = const restricted::pure_pointer >&; Pointer = const restricted::pure_pointer >*]btree::safe_btree_iterator::reference btree::safe_btree_iterator::operator*() const [with Tree = const btree::safe_btree >, std::less > >, std::allocator > >, 256> >; Iterator = btree::btree_iterator >, std::less > >, std::allocator > >, 256> >, const restricted::pure_pointer >&, const restricted::pure_pointer >*>; btree::safe_btree_iterator::reference = const restricted::pure_pointer >&]static const Config& config_common::config::get() [with Config = debruijn_graph::config::debruijn_config]bool restricted::pure_pointer::operator==(const restricted::pure_pointer&) const [with T = 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size_to >= fromfalse%luNODE_IsCanonical(e)basic_string::append +L M General Writing linkUIHHHATSIHL`Lht#)p)M)U)])e)m)u)}dH%(H81HFH HDž Dž$0H)HEH\$H(H@HHH0AIT$LHI$HcHH8dH3<%(Lu He[A\]USHH-HtGtH[]GPWuHHHH@H9uLHt7C uHH HPH9u-H@HH[]fDC PS D@HH[]-230V30001 2 2 . 12423(3-../iB ,Xq!d(,XqM;(g0d$'G''' '%$&%%%%$ZAWAVIAUATUSHHHLbdH%(H$1HL$HMFH=AT$HD$0HD$PLd$8H6Ld$XBAD$HD$`L|$PHLIHD$H|$0LLl$hMt$HHXAMXLl$XMt$HHAMHMHHU(L$HLHEIUH$HPH0HHD$8Ht#HHuHtHH[HH$H=HCH<$H\$HH|$@HD$@HuHD$`HD$HHHD$ht@HT$LH|$@LHL$XHt#HHqHL$hHt#HHqH$HH\$XHD$PHH)HD$HCHHqpHH5HIH9V H]P RHH5HHJH9R0IT$HD$0Ld$8HD$0H6HD$PHD$8HHD$X]@SH$HHuH\$hHD$`tH=+CHT$LHD$hHtpHH0HuQHH5HIH9" HP u"HH5HHJH91 RDHD$HHt&HHHp{H}HUHD$pLHuH$IHU HD$LHPH0H$HUH$HHPH9H$HHH$HHHu@H$HH$H@L$H$H9I<tH$H9H$vMML9tH$H9kHIVIHHPH9IHHINHHHINHH$H@@H9tH$H|$pHH9tHl$XHt#HH E Ht#HHSCRH$IL9tMt%HHMAD$NH$dH3%(LH[]A\A]A^A_@CH<$H\$HHuH\$hH|$`H|$@CjfDH$HD$HHuHD$hHD$@HD$`;HD$0HD$8H6HD$PHD$X@o@AF`HqpHH5HIH9'HP YHH5HHJH9bR7fq~yH1H=HvH9gHQ HH=D$HrH9HRD$AMqAuFIMH5HIH9HAU IUH5$LHJH9R$Do@)$RfDAD$HAL$I$H H@H9HYAD$ |I$H LHPH9PYq~yQH1H=HvH9HnQ HH=D$HrH9HRD$AMqAuIMH5HIH94HAU sIUH5$LHJH9xR$IDEHMHEH H@H9HE HEH HHPH9PCHKHH H@H9HC {HH HHPH9PY11LCfDCHD$HHHpWd@Hqpf.AD$ PAT$ fDP JH f.AU JAM P JH fQ rq NfAU JAM C PS fQ rq fE PU gfP JH CD$$g^fDHT$$LHT$$DHT$(D$'HHL$HT$(D$'HL$rfHT$HH$HT$H$@HT$HH$HT$H$@H$LH$fDHT$(D$'HHL$HT$(D$'HL$ZHT$$LHT$$DH$HH$fDH$HH$gfDHT$HH$HT$H$D$$HH|$XHtHtHH$IL9tMtLHHH$H|$pHH9tH$HIH9tLHH|$hHtH|$HHiiH|$hHHtH|$XHtH|$8H]SH|$XHHtHHH=HH=HH5Hstd::__cxx11::string io::CanonicalEdgeHelper::EdgeString(io::CanonicalEdgeHelper::EdgeId) const [with Graph = contracted_graph::ContractedGraph; std::__cxx11::string = std::__cxx11::basic_string; io::CanonicalEdgeHelper::EdgeId = path_extend::scaffold_graph::ScaffoldVertex]Sequence Sequence::Subseq(size_t, size_t) constconst Sequence debruijn_graph::DeBruijnGraph::VertexNucls(debruijn_graph::DeBruijnGraph::VertexId) const?|=0C?CY@GCC: (Ubuntu 7.5.0-3ubuntu1~18.04) 7.5.0zRx 0D0XBAD G0f  AABH LBBI B(H0A8L?n 8A0A(B BBBD 0}BAD Y@5  AABG $AL C A <8AAD _ AAI S DAH \DAzPLRx P$BBE B(A0A8G 8A0A(B BBBA PxBBE B(A0A8M 8A0A(B BBBE P(BBE B(D0A8Y 8A0A(B BBBG P (BBE B(D0A8Y 8A0A(B BBBC @tAC P.^.!. 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transitions/srv/scratch/marinovg/spades-cloudspades-paper/assembler/src/common/modules/path_extend/read_cloud_path_extend/statistics/short_edge_dataset.cpplong_edge_path_index.Contains(first)long_edge_path_index.Contains(second)AUATHUSHLgH_HI9tsIf.mtyHI9tPHkHtH=u݋EPUuHEHPE PU uHEHHPI9u@I]Ht7HH[]A\A]DHEHPE f.H[]A\A]AUATHUSIHLgH_HI9u nf.mHI9tLHkHtH=uًEPUuHEHPE PU uHEHHPI9uI]HtHHL []A\A]HEHPE === Stack Trace ===AWAVH5AUATH=USHXdH%(H$H1HHH@HHr{87sCH=HHHHÉIHōCL%L=Ml*DsCH=HHL9H]HtbHH=HHI$H@IH{8uHH H@0L9tHwI$HxLw LH$HdH3%(uKHX[]A\A]A^A_HHH H@0H9HVerification of expression 'false' failed in function ''. 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Message ''./srv/scratch/marinovg/spades-cloudspades-paper/assembler/src/common/barcode_index/scaffold_vertex_index.hppHead entry extractor from BarcodeIndexInfoExtractorWrapper is currently not supportedATUSHH\$ dH%(H$1HH{H5H{H5H{H5H{H5}H{H5 H{H5kH{H5 H{H5 HHH5UHH5HHHsHHT$H4$H=HH<$HEH9tHsHHT$H4$H=HH<$HH9tH=H=H H5H=HHHH<$HIH9tL'+0  Id,LeftSize,RightSize,Barcodes,LeftInter,RightInter,LeftCov,RightCov,Length,Coverage,Correct,AWAVAUATUSHHHIIdH%(H$1L=HƄ$HDŽ$Ƅ$1H$HIHDŽ$HDŽ$HDŽ$HDŽ$L<$LHHI}H$H(H$IuIH3I}0H$HzLH$1H5\LH$H@HH{8sCLHH]LuI9u&uCLHHXI9H3LH5HHHsHH5HHHsHH5HHHsHH5HHHs HH5HHHs(HH5HHC0HH5HHC8HH5HHHs@HH5HHCHHH5HHsPHIHH@IH(}8NHHEH H@0H9-H @HI}H$H(H$HHD$I}pHI}@HD$IGH IL<$H HH$H$dH3%(uuH[]A\A]A^A_HHH H@0H92H%w HLHHIWHL<$HHIH$HHI}H; 1 &  UIHHHATSIHL`Lht#)p)M)U)])e)m)u)}dH%(H81HFH HDž Dž$0H)HEH\$H(H@HHH0AIT$LHI$HcHH8dH3<%(Lu He[A\]AWAVAUATIUSHHFHH|$HnH9H$qLs Lm M9M9H9$M|$M9rsH9$tHLp HI$M9rM9w&HLh HID$M9v_L9uIl$ID$Lm I$Il$I$Ls M9jHD$Ao$AoD$@HD$H[]A\A]A^A_DH;$uM9sL9tSM9H$fsfH9nt{HMHID$Lh mH9$cGfH<$HI$ID$GH9nHtH$Lm Lp M9tH~HMHI$Lp cUSHHHHtfDHHHuHEH}1H0HH}HEHEH9tH[]fH[]AUATUSHLgHI9tnIDmtyHI9tPHkHtH=u݋EPUuHEHPE PU uHEHHPI9u@I]Ht7HH[]A\A]DHEHPE f.H[]A\A]USHHHHtfDHHHuHEH}1H0HH}HEHEH9tH[]fH[]USHHHHtfDHHHuHEH}1H0HH}HEHEH9tH[]fH[]HWHH9t\ATUISHXH)HHlHH8HtH9HuI$Ht[]A\Hf.[]A\Ht HUSHHHHtfDHHHuHEH}1H0HH}HEHEH9tH[]fH[]is_initialized()Config not initialized/srv/scratch/marinovg/spades-cloudspades-paper/assembler/src/common/pipeline/config_singl.hppATUSHdH%(H$1=H\$ HH{H5H{H5H{H5H{H5qH{H5 H{H5]H{H5 H{!H5 HHH5HH5HHHsHHT$H4$H=HH<$HEH9tHsHHT$H4$H=HH<$HH9tH=H==Ht-H$dH3 %(HHİ[]A\H=tHHHH=HH HHH@HHHHH`HHHHHXHH HHHHH HHH HH HHHHHH HH HH HHH HH HHH(HH HHH HHhHHH HHHHHHHH HHHHH HH HHH(HH HHH@HH HHH HH HHHPHHHHHHHHHHHHH HHH@HHHHHHHHHHHHHHHHH HHHHHHH5H=FH H5H=!H<$HIH9tLHHH'8=  AWAVIAUATIUSHHHOHHI)H)HHH4IH9LH$H]HMMH$III)MtHII9t LHLHL$L$HL$L$IODM)L9tLLLIMHtHLmLuL}H[]A\A]A^A_L<FfDHH9-HuME1E1>H=SHtot+[fGPWuHPC PS HPC uHH[H@HHHHt HSHHHHtH߾ [HHHHt HSHHHHtH߾ [/srv/scratch/marinovg/spades-cloudspades-paper/assembler/src/common/modules/path_extend/scaffolder2015/scaffold_vertex.hppvertex.GetType() == EdgeUSHHH8dH%(HD$(1HH|$HH\$Hl$HtH=uQCHHHtHH$HT$H$HT$HL$(dH3 %(uOH8[]CH|$HtWH H5H=HHtHH*nFHHGH0Ht HHGH Ht HHGH(Ht Ht3ATIUSHHsLHkHHHu[]A\@HtKATIUSHHsLH{ HC0HkH9tHHHu[]A\f.Ht[ATIUSHHsLH{PHC`HkH9tH{0HC@H9tHHHu[]A\AWAVAUATIUSHHHHwI$ I$0H9tI$I$H9tI$I$H9tI$I$H9t&@H;HCH9tH H9uI$HtHI$I$H9LL)IHILHI!IMiIfDHhHxH9tHHHXH9tH(H8H9tHHH9tHHL}XH]PI9tH;HCH9tH I9uH]PHtHL}@H]8I9t&H;HCH9tH I9uH]8HtHL}(H] I9t&H;HCH9tH I9uH] HtHL}H]I9t&H;HCH9tH I9uH]HtHM9Lt IƘI$HtHA$xI$ I$ I$ I$ H9tI$ I$ H9tI$` I$p H9tI$@ I$P H9tI$ I$0 H9tI$ I$ H9tI$ I$ H9tI$ I$ H9tI$x I$ H9tI$X I$h H9tI$P I$` H9tI$0 I$@ H9tI$ I$ H9tA$tI$I$H9tI$I$H9tI$I$H9tI$hI$xH9tI$@I$PH9tI$ I$0H9tI$I$H9tI$I$H9tI$I$H9tI$I$H9tI$I$H9tI$`I$pH9tI$@I$PH9tA$I$xI$H9tI$XI$hH9tI$I$H9tI$xI$H9tI$I$(H9tI|$xI$H9tI|$8ID$HH9tI|$I(L9tH[]A\A]A^A_H[]A\A]A^A_fI$I$(H9tI$I$H9tI$I$H9tI$I$(H9tI$I$H9tI$I$(H9tI$I$H9tI$I$H9H>I$I$I$I$H96,Ht3ATIUSHHsLHkHHHu[]A\@USHHHHHdH%(HD$81HHHP(Ht$HHl$(HL$8dH3 %(u HHH[]AUATIUSHHHHHHdH%(HD$81HHHL`0P(HLHAHt$HHHL$8dH3 %(Hu HH[]A\A]Ht$HHH 6BxAUATIUSHH_(Hu%DmHLMteHs(H{L#HkHtH=u‹EPUuHEHPE PU uHEHPHLMufIE I}1IHHI}IEIEL9tDH[]A\A]DHEHPE &HEHPz@H[]A\A]HAUATIUSHHHsLHk(LcHtH=t$mt]HLMuH[]A\A]fEPUuHEHPE PU uHEHPfDfDHEHPE Ht3ATIUSHHsLHkHHHu[]A\@Ht3ATIUSHHsLHkHHHu[]A\@Ht3ATIUSHHsLHkHHHu[]A\@AUATIUSHHHwI$I$I$I|$pMl$8I\$0HID$(I9ulmtyHI9tPHkHtH=u݋EPUuHEHPE PU uHEHHPI9u@I\$0Ht.HH[]A\A]@HEHPE fH[]A\A]AWAVLwAUATIUSHHH_Ht_LFfHCAHtHH{(I9rHCE1HuEIu$I9wAHH1[]A\A]A^A_LH9]toHIMD$Hx(HI9vM9AuV0Ao$LLHD@ HHE(HHغ[]A\A]A^A_@IAM9tE1IE(I9D$AAWAVH.袋.AUATIUSIHHMD$H?LI)H)HHHH IH9LHT$I<$MD$HXXHT$IIMt9oHBPAEoBIEPAEoB AE oB0AE0oB@AE@H9HGXHHLH)HH.袋HHHH!HH HHI4 fHHt3ooBCoB C 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H5H=USHHH^H>HtH=uACLHHH0HPLH L@AHtH߈D$D$H[]@CHHtHHHAUATH)USHHIHHHHHL$fEHLL$`HL$PLD$XHt$@HT$HHtH=m7HkH{HtH=LEHLL$`HL$PLD$XHt$@HT$HHtH=mHk(H{ HtH=EHLL$`HL$PLD$XHt$@HT$HHtH=mHk8H{0HtH=EHLL$`HL$PLD$XHt$@HT$HHtH=mH@I9HkH;HsH=`E\EEEXUJMOHUD$HRU D$JM *HUD$HRD$HH[]A\A]ËUJMSHUD$HRU D$JM .HUD$HRD$HHC[]A\A]UJMOHUD$HRU D$JM *HUD$HRD$HHC []A\A]UJMKHUD$HRU D$JM &HUD$HRD$HHC0[]A\A]HUD$HRU D$tfDHUD$HRU D$fDHUD$HRU D$fDHUD$HRU D$W,DLL)HHt/HtHt8HL[]A\A]H|$@Lu*IH|$@LuIH|$@LtHL[]A\A]IHHtHHSH0H_HHT$HL$LD$LL$ jt$(t$(t$(t$(VHH9H`[Dijkstra%lu startedAdding new entry to queueEntry: vertex distance finishedAll neighbours of vertex processedChecking new neighbour of vertex /srv/scratch/marinovg/spades-cloudspades-paper/assembler/src/common/assembly_graph/dijkstra/dijkstra_algorithm.hppCheckPutVertex returned true and new entry is addedAWAVAUATIUSHdH%(H$1HHt$XHT$@H!HL$8LD$HHHHu HHHHD$H$@HD$H$PHD$0f.H;l$H8HHtH1L}I$IHIL$xM!HI^t6HHH@HtH9X(sH@HuH9t H9Z(HEHD$ IHD$(H8IHtH1ID$Ht$8H+pIF HHD$H8IHtH1WHt$ HD$(HL$Ml$8I|$0H\$xH$HD$pL$H$Lj$$$$PH0I9pH8HHtH1^H|$L|$0H5!LL$ LD$@H5H 1LH$(H$ LH5HH$ IEH9tHD$LHHpL$ LH|1HH$ IL9tH|$H;l$vH8HHtH1fH$dH3%(H[]A\A]A^A_H|$L|$0H5!LL$ LD$@H5H 1LH$(H$ LH5HH$ IEH9tHD$LHHpL$ LHp1HH$ IL9tH|$OfDH8IHtH1HD$H$L$H$HD$(H$HD$XH$HD$@H$HD$ H$HD$HHpH;pHt2fo$fo$Ffo$F H$HF0HF8Ht$HHFHt$HHPHL$oo@HH>H$1)$o@)$o@H)HHm۶m۶mHH)$$$H$$$$$H@!fH|$H|$0H5L$ H5H Iغ 1LH$(H$ H|$0H5 HHD$PHt$H|$PH$ IEH9tHD$LM6HpL$ LHu1LH$ IL9tH|$DH|$H|$0H5HD$IML$ LHpHL$L$ H|$LHs1H$ IL9tH|$H|$H|$0H5HD$MuL$ LHpL$ LHw1LH$ IL9tH|$H$@HH}H5L$ LD$@H5H 1LH$(H$ H}H5HH$ IEH9tHuLHL$ LH~1HH$ IL9tHUH\$HH$HHC-HUHEH)HH0HH|$HH$ IHL9tHHHH$ IHL9tStarting dijkstra run from vertex Priority queue initialized. Starting search already counted. Proceeding to next queue entry.Check for processing vertex failed. Proceeding to the next queue entry.Finished dijkstra run from vertex Dijkstra iteration startedVertex with distance fetched from queueDistance to vertex is found to be at distance from vertex UHAWAVAUATISHH8HdH%(HE1H8HtH1I5 HHHC`HDž HDž(HDž0HHCpLHHHCxHHǃHǃHHHHHHHHHǃHǃHHHHHHH(H;0HǃHǃHHHHCXHDž@HDž`HDžpHHHHPHHXHhI Ht.fo@foPFfo`F HpHF0H8H(oFHHH 1)oF)oF)HFH)HHHm۶m۶mHHHH@H HHHHHRHtH9J(sHRHuH9HtH;H(s$HHHHHHH@8H@HHP0HP@H8IHtH1b H@L HHHH(H9 {XH8IHtH1H HHHLo(oGLg0)HHGLw HHHHDHHRHtH9J(sHRHuH9HtH;H(s+HHHHHH HLp8Lh@L`HHp0H(HHPH)H8H(H8IHtH1!HHHtKHHfDHH@HtH;P(vH@HuH;Ht H;Q(HHHfoH)IH8HtH1HC`HH;CPHC`ChH8IHH1LLHH5IvLM$$L LH1LfH8IH4H1HLH5LLH5H L1H(H LH5HH IGH9tHLM$$HpL LH1LH IGH9tHH(H9 8@CXH8HHtH1H HtHEdH3%(GHe[A\A]A^A_]o@H)H1)o@)o@)HHHo@oG@oG @HO0HHHm۶m۶mjHH(H@HP=LLHH5IvLM$$L LH1LH IGH9tHfHLH5LLH5H L1H(H LH5HIHLH5HH IGH9tHLM$$HpL LH1LH IGH9tHH1@HH;C nHHHHL HH L@LI}H5"L LH5H 1LH(H I}H ID$H9tIIuLIL LH1LH IL9tLHLH5LLLH5H 1LHHLH5HIHLH5 HILH5H L1H(H LH IGH9tHIL9tHLM$$HpL LH1LH IGH9tHL@LI}H5M4$L IuLL LH1LH IL9tLL@LI}H5"L LH5H 1LH(H I}H ID$H9tIuLHL LH1HH IL9tLxH@H H(HHLH HtHHHIL9tHH HIGH9tHH IWHH9uHLHH HIGH9uHSH IHL9tH IHL9  correct edges. random edges.Total correct edges: Total random edges: Getting short_edge_dataset long edges ultralong edgesshort_edge_dataset_/srv/scratch/marinovg/spades-cloudspades-paper/assembler/ext/include/btree/safe_btree.hgeneration_ > 0AWAVAUATIUSH_IHHHdH%(HD$81ID$HI|$0LwL9L?MLDXE1DA9t]AML$HcHHL;Lv4_B HcAHHL9L:D9uA?8u.McJwD@H@8:DXE9tAID$ ED$(OIHHIu III9vMcMt$IPHoAD$IIJ<L!HHHHu HIT$8HHH9A|$HtjHL!A|$@HH8L@@tHHLL!Hp@HH8H9r>HIT$8>fDAEB`DHzLH9sHD$8dH3%(HH[]A\A]A^A_ÐID$ McD$(A|$@NHH9txWPI9|HHI$Lp LLt$(IHT$ LHD$H$HD$Hl$LHII>H98I|$ HHcPHHHH:L!H1HIT$8AD$@IL$0AL9Lq1ID$ AT$(MALHH!H9H H5H=H HBH)HA9IMcMt$A~9x+HH/H'H H5H=}1tails: Long edgesAWAVIAUATUSHHodH%(H$1H Lu HD$HE HtH@H|$0HHD$HH\$8HD$0L$HD$@D$PL$Lt$XHD$0LH$Ƅ$Ƅ$H$HD$8H$HD$@H$HD$HH$D$P$HD$XH$LH$H$H$HDŽ$HDŽ$L$LI}HH H9:H$] I}HcPHHHHHH#H 1H LH$Ƅ$HD$`HD$(HD$ 1HD$HE Ho8HH yHHu QH9LE(HcHHHH HRHH$L$H$H$H$$L$Ƅ$ Ƅ$(j89HH QHHHH\$`H\$pH|$hHL$x$L$ yHHM(H9HHL$`HoD$hH|$I|$HD$HT$H2H90H$~I|$HcPHHHHH#2H1H'LH$Ƅ$ I}I|$HD$HT$H2H90v$H$IOHHyHH!@HA8HH!HR H)H9T$sJIHD$(LBHQ@H$HH$I9IGLHxH@@HD$ H$HQ LA H+:HH FIHHH$H$L$H$$L$LE@H9HI(HH$Ho$LI}HD$HT$H2H90PLH$HE HLE(11I1HfDHI H)H9L$IHD$(HRLAxHHH9LE(h9`DPHH\$`Ht$hHH\$pH9HD$xL$HM($x9fDr9p hr9p~H$HH HHL$HL$HH\$`H\$pHt$hHD$xH$HH$HL$xH9Hc$ZH$HrHHt$`HoD$hH|$I}HD$HT$H2H90H$H;$$@8$ $8$(H8IHtHLH8HHtHH|$ fH*D$ H|$(fH*L$(H$dH3%(^ H[]A\A]A^A_HH\$pH\$xHD$hHM(DŽ$L$HHL$`BHH$H$H$H$L$HI($DBD9HrU@J9HAHH$H$H$HI(DŽ$L$HH$(J9H%H$9HvHHt$`LLAfHD$(fHƒHH H*XXDHD$ fHƒHH H*XD[9XHH$pL$0HLD$ H5H L1H A11LH$PHSH$PHHPH9pH$PHHH$`HHH}H$XHH@@H$XH$PH$PHCH9tH$0IL9tHuHMeL$PLHvLH$PHH9tHiDHHu@H$pHH5Ht$(H}L#H$PHuHL$PLHwLH$PHH9tHo@)$`HHHH H5H=}1H$PHIH9tLHHH$PHIH9tLH$0IL9tIHLH$PHIH9tHH111F1E1:HAWAVIAUAT`USHIHHL$IHC Hs01ID$0ID$8ID$@ID$ HC(ID$(HC8HH)HIHHt,HH9HHHC8Hs0II)HH9IL$0IL$8Il$@tHLHHCHHsLIL$8ID$ID$Ml$ID$HHCPHID$PHCXID$XA$-HkHM`HHE Lm8L+m01HC HE(HC0HC8HC@HC(LHHtHH9LHIHK0HK8Lk@HE8Hu0II)H9tHLHHEHLHK8HCHHEPHCPHEXHCXEHCHCI^LsHuHu'HmIHHL[]A\A]A^A_DHL$HLHCfHL$LLID$HHHLHLLHHHHHHAWAVAUATIUSHHdH%(H$1HH#Lt$PL|$ LHP@H@8HD$PHGHT$XHxI|$HHHHu@IWHD$(HD$0HT$8HT$@HHD$HtTLLL|$PHHHQHuHL$8H f.HHQHuHUXHL$@HD$0HT$HIVHD$`D$XHD$xHT$hHT$pHs@HHL$LLt$H$HHHBHuHT$hH$ fHHBHuHCXH<$HT$pHD$xH|$`HEXH8HD$HEH9tcLc@E1H8@Mt=HH HLHHRHtH9J sHRHuH9t H;N rIHH9uL)l$H4$LHt$0LH$dH3%(HD$u$HĘ[]A\A]A^A_ÐHCXH$2Ht$0HLHAWAVIAUATUSHdH%(H$1HH=Ht$ HT$(H@HH9HH#HL|$pLL|$HP@H@8HD$pIFHT$xHxHIFHHxHT$HHD$PHHD$@D$HHD$hHT$XHT$`Hu@HD$HtYLHHD$pHDHHQHuHL$XH f.HHQHuHUXHL$`HD$PHT$hHD$HDŽ$D$xHDŽ$HPH$H$Hs@H;H|$HL$8H|$8HD$HDHHBHuH$HT$DHHBHuL{XHD$H$L$H$HEHL}XH8H9tdLc@E1H8Mt=HH HLHHRHtH9J sHRHuH9t H;N rIHH9uM)Ht$H|$Ht$PH|$MfuGH$dH3%(iHĸ[]A\A]A^A_fDL{XHD$#fDIHD$H@ H9H|$ HHt$pH#HP@H@8HD$pIFHT$xHxIIFHt$(I8HxI}D$L9L`@Hh81Mt=HO HLHHRHtH9J sHRHuH9t H;N rHL9HuHfH*T$IH=H@HH9H|$ HL|$pLL|$H#HP@H@8HD$pIFHT$xHxI~Ht$(HHHT$HHD$PHHD$@D$HHD$hHT$XHT$`Hu@HD$HtWLHHD$pHHHQHuHL$XH f.HHQHuHUXHL$`HD$PHT$hHD$HDŽ$D$xHDŽ$HPH$H$Hs@HqH|$HL$8H|$8IH HHBHuH$L HHBHuLsXH$L$L$HEHLuXH8H9taLc@E1H8@Mt=HH HLHHRHtH9J sHRHuH9t H;N rIHH9uM)H|$LHt$PH|$MxWfI*L$^f(bHT$(Ht$ LIBHfHH H*XD$eLfHAL H*XLsXE1LHT$(Ht$ IeHT$(Ht$ LHxfH*\$HfHH H*XD$H|$Ht$PHHH=HH=HH5Hbool restricted::pure_pointer::operator==(const restricted::pure_pointer&) const [with T = omnigraph::PairedVertex]void btree::btree_iterator::increment_slow() [with Node = const btree::btree_node >, std::less > >, std::allocator > >, 256> >; Reference = const restricted::pure_pointer >&; Pointer = const restricted::pure_pointer >*]btree::safe_btree_iterator::reference btree::safe_btree_iterator::operator*() const [with Tree = const btree::safe_btree >, std::less > >, std::allocator > >, 256> >; Iterator = btree::btree_iterator >, std::less > >, std::allocator > >, 256> >, const restricted::pure_pointer >&, const restricted::pure_pointer >*>; btree::safe_btree_iterator::reference = const restricted::pure_pointer >&]static const Config& config_common::config::get() [with Config = debruijn_graph::config::debruijn_config]const Block& boost::dynamic_bitset::m_highest_block() const [with Block = long unsigned int; Allocator = std::allocator]boost::dynamic_bitset::~dynamic_bitset() [with Block = long unsigned int; Allocator = std::allocator]barcode_index::BarcodeIndexInfoExtractor::const_intersection_iterator::reference barcode_index::BarcodeIndexInfoExtractor::const_intersection_iterator::operator*() [with barcode_entry_t = barcode_index::FrameEdgeEntry; barcode_index::BarcodeIndexInfoExtractor::const_intersection_iterator::reference = barcode_index::BarcodeIndexInfoExtractor::IntersectionData]debruijn_graph::EdgeId path_extend::scaffold_graph::EdgeGetter::GetEdgeFromScaffoldVertex(const path_extend::scaffold_graph::ScaffoldVertex&)virtual barcode_index::SimpleVertexEntry barcode_index::BarcodeIndexInfoExtractorWrapper::GetHeadEntry(const ScaffoldVertex&)std::vector path_extend::ShortEdgeDatasetExtractor::GetShortEdgeEntries(const path_extend::validation::ContigTransitionStorage&, const path_extend::validation::ReferencePathIndex&, const std::vector >&) constbool restricted::pure_pointer::operator==(const restricted::pure_pointer&) const [with T = omnigraph::PairedEdge]St11_Mutex_baseILN9__gnu_cxx12_Lock_policyE2EESt16_Sp_counted_baseILN9__gnu_cxx12_Lock_policyE2EEN13barcode_index20AbstractBarcodeIndexEN13barcode_index33AbstractBarcodeIndexInfoExtractorEN13barcode_index25BarcodeIndexInfoExtractorINS_14FrameEdgeEntryEEEN13barcode_index30FrameBarcodeIndexInfoExtractorEN13barcode_index12BarcodeIndexINS_14FrameEdgeEntryEEEN13barcode_index32ScaffoldVertexIndexInfoExtractorEN13barcode_index44IntersectingScaffoldVertexIndexInfoExtractorISt3setImSt4lessImESaImEEEEN13barcode_index32BarcodeIndexInfoExtractorWrapperEN13barcode_index38SimpleScaffoldVertexIndexInfoExtractorEN13barcode_index19TailThresholdGetterEN13barcode_index24ConstTailThresholdGetterEN13barcode_index36AbstractScaffoldVertexEntryExtractorISt3setImSt4lessImESaImEEEEN13barcode_index34ScaffoldVertexSimpleEntryExtractorEN9omnigraph16LengthCalculatorIN14debruijn_graph13DeBruijnGraphEmEEN9omnigraph20VertexProcessCheckerIN14debruijn_graph13DeBruijnGraphEmEEN9omnigraph19BoundProcessCheckerIN14debruijn_graph13DeBruijnGraphEmEEN9omnigraph16VertexPutCheckerIN14debruijn_graph13DeBruijnGraphEmEEN9omnigraph19CompositePutCheckerIN14debruijn_graph13DeBruijnGraphEmEEN9omnigraph16LengthPutCheckerIN14debruijn_graph13DeBruijnGraphEmEEN9omnigraph15BoundPutCheckerIN14debruijn_graph13DeBruijnGraphEmEESt19_Sp_make_shared_tagSt23_Sp_counted_ptr_inplaceIN9omnigraph16LengthPutCheckerIN14debruijn_graph13DeBruijnGraphEmEESaIS4_ELN9__gnu_cxx12_Lock_policyE2EESt23_Sp_counted_ptr_inplaceIN9omnigraph15BoundPutCheckerIN14debruijn_graph13DeBruijnGraphEmEESaIS4_ELN9__gnu_cxx12_Lock_policyE2EESt23_Sp_counted_ptr_inplaceIN13barcode_index30FrameBarcodeIndexInfoExtractorESaIS1_ELN9__gnu_cxx12_Lock_policyE2EESt23_Sp_counted_ptr_inplaceIN13barcode_index32BarcodeIndexInfoExtractorWrapperESaIS1_ELN9__gnu_cxx12_Lock_policyE2EESt23_Sp_counted_ptr_inplaceIN13barcode_index24ConstTailThresholdGetterESaIS1_ELN9__gnu_cxx12_Lock_policyE2EESt23_Sp_counted_ptr_inplaceIN13barcode_index38SimpleScaffoldVertexIndexInfoExtractorESaIS1_ELN9__gnu_cxx12_Lock_policyE2EESt23_Sp_counted_ptr_inplaceIN13barcode_index34ScaffoldVertexSimpleEntryExtractorESaIS1_ELN9__gnu_cxx12_Lock_policyE2EESt23_Sp_counted_ptr_inplaceIN13barcode_index19ScaffoldVertexIndexISt3setImSt4lessImESaImEEEESaIS7_ELN9__gnu_cxx12_Lock_policyE2EEGCC: (Ubuntu 7.5.0-3ubuntu1~18.04) 7.5.0zRx  0<AG j DA Th|#X0DXl   !4H\p    $ 8 L ` t     4Af I C4Af I C4Af I C84Af I CX4Af I Cx4Af I C4Af I C4Af I C4Kc A H}BBE B(E0A8P@s 8D0A(B BBBG 0@BAD G0f  AABH HtBBH A(D0 (D ABBJ d(A ABB8BBH A(G0 (I ABBM LBBI B(H0A8L?n 8A0A(B BBBD zPLRx $$BAF GPLBBB B(A0A8M 8A0A(B BBBD $AL C A HBBB B(D0A8DP 8A0A(B BBBF 0\wAAG W AAN DAAHBBA A(D0 (D ABBJ d(A ABB0wAAG W AAN DAA0wAAG W AAN DAA8DzNAD x ABR AABD0wAAG W AAN DAA8lBAA G  AABD H.BBE B(D0A8GP 8A0A(B BBBI < bIM J |\ "p *H] " *H],tAAJP AAH  " " ",( :GDA dABE,X RGDA vABK, bGDA HABI` BBB B(D0A8K@. 8A0A(B BBBH D 8A0A(B BBBJ , :GDA dABE(L \AAM`B DAA <0BBD A(PpS (A ABBA H #BBD A(D0 (A ABBJ t(A ABBH KBD A(G0~ (A ABBC xH0,P :GDA dABE, :GDA dABE, :GDA dABEH BBD A(K0 (D ABBI \(A ABB`, BBF B(D0A8G@P 8F0A(B BBBI a 8I0A(B BBBE H XBBL B(D0A8JP 8A0A(B BBBE L KBH A(J0 (A ABBH hB0(,AAD U AAC HXNBBE B(D0A8GP 8A0A(B BBBC KLBBD A(Q0k (F ABBH l (D FBBF HaBBB B(A0A8JP 8A0A(B BBBK T"AZ E AL, BBE B(F0A8M@ 8D0A(B BBBE 0| FAD  ABF < BBD A(Q@ (A ABBG L8BBA A(D0 (D ABBI D (C DBBA ETAv I S,RAG E EF  EA HBBB B(A0A8D@[ 8D0A(B BBBJ (8OAAM m EAA dDU(|AAG0 AAA ,` AAD@X AAA 4 BAD G@  AABA HFBB B(D0A8KP< 8A0A(B BBBF (\AAD U AAC lBFA A(J0E (A ABBA Q (G ABBK D (F ABBI D(F ABBHBBD A(O@i (D ABBF n(A ABBlD\BBE B(D0A8DpYxJGGGGGGIpX 8A0A(B BBBD 0l FAD  ABF < BBD A(Q@ (A ABBC H(BBC A(J0o (A ABBI p(F ABBL,BBB B(D0A8H` 8A0A(B BBBA LBBA A(D0 (D ABBI D (C DBBA ADp A 0DUHdAT K C0hBAA D@c  AABA 0BAA D@x  AABD PBBB B(D0A8O 8A0A(B BBBE $?Dl H FPy BBE B(D0A8G 8A0A(B BBBE 8BBA A(JP (A ABBA P;BBB B(A0A8G 8A0A(B BBBA 8(ZBBD A(Gp& (A ABBA HdDBBE B(D0A8NpU 8A0A(B BBBC H(BBL B(D0A8JP 8A0A(B BBBG lBFA A(J0D (A ABBB P (G ABBL D (F ABBI D(F ABBP$BBE B(A0A8D[ 8A0A(B BBBJ PxBBE B(E0A8MQ 8A0A(B BBBG HBBE A(D0M 0A(A BBBB DDBBE A(D0Dp 0A(A BBBA HBBE B(D0A8PPh 8G0A(B BBBH 0AC G.u A 0rAC HL.g A (sAR Cs.R A (@sAR Cs.R A 4l=AC G.A K I.0FAD  ABF <BBD A(Q@ (A ABBC PBBB A(D0 (F BBBG d (F BBBH 8lFAC HN. 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6    =  0IB  /  *    KU%l%$$ $ E$ $ $$/%%$/$$+&&&&q&%q&&&$!$!*"!%#$&$&.J]{9+LQD!}^]g   === Stack Trace ===AWAVH5AUATH=USHXdH%(H$H1HHH@HHr{87sCH=HHHHÉIHōCL%L=Ml*DsCH=HHL9H]HtbHH=HHI$H@IH{8uHH H@0L9tHwI$HxLw LH$HdH3%(uKHX[]A\A]A^A_HHH H@0H9HSplitIndex,Status, reference transitions close transitions conjugate transitionscorrectcloseconjsplit_statistics.csvUIHHHATSIHL`Lht#)p)M)U)])e)m)u)}dH%(H81HFH HDž Dž$0H)HEH\$H(H@HHH0AIT$LHI$HcHH8dH3<%(Lu He[A\]AWAVAUATIUSHHFHH|$HnH9H$qLs Lm M9M9H9$M|$M9rsH9$tHLp HI$M9rM9w&HLh HID$M9v_L9uIl$ID$Lm I$Il$I$Ls M9jHD$Ao$AoD$@HD$H[]A\A]A^A_DH;$uM9sL9tSM9H$fsfH9nt{HMHID$Lh mH9$cGfH<$HI$ID$GH9nHtH$Lm Lp M9tH~HMHI$Lp cUSHHHHtfDHHHuHEH}1H0HH}HEHEH9tH[]fH[]USHHHHtfDHHHuHEH}1H0HH}HEHEH9tH[]fH[]USHHHHtfDHHHuHEH}1H0HH}HEHEH9tH[]fH[]HWHH9t\ATUISHX(H)HHl(H(HxHH9tH9HuI$Ht[]A\HD[]A\Ht HVerification of expression 'is_initialized()' failed in function ''. In file '' on line . Message 'Config not initialized'./srv/scratch/marinovg/spades-cloudspades-paper/assembler/src/common/pipeline/config_singl.hppAUATUSHdH%(H$1=H\$ HH{H5H{H5H{H5H{H5qH{H5 H{H5]H{H5 H{!H5 HHH5HH5HHHsHHT$H4$H=IHH@MMUA|$8At$CLHH<$HEH9tHsHHT$H4$H=IHH@MMA|$8YAt$CLHH<$HH9tH=H==CHt1H$dH3 %(H Hĸ[]A\A]DH=tHHHH=HH HHH@HHHHH`HHHHHXHH HHHHH HHH HH HHHHHH HH HH HHH HH HHH(HH HHH HHhHHH HHHHHHHH HHHHH HH HHH(HH HHH@HH HHH HH HHHPHHHHHHHHHHHHH HHH@HHHHHHHHHHHHHHHHH HHHHHHH5H=BLI$H H@0H9PLCfDLI$H H@0H9L{H H5H=!H<$HIH9tHLIHt3ATIUSHHsLHkHHHu[]A\@HtKATIUSHHsLH{ HC0HkH9tHHHu[]A\f.Ht[ATIUSHHsLH{PHC`HkH9tH{0HC@H9tHHHu[]A\AWAVAUATIUSHHHHwI$ I$0H9tI$I$H9tI$I$H9tI$I$H9t&@H;HCH9tH H9uI$HtHI$I$H9LL)IHILHI!IMiIfDHhHxH9tHHHXH9tH(H8H9tHHH9tHHL}XH]PI9tH;HCH9tH I9uH]PHtHL}@H]8I9t&H;HCH9tH I9uH]8HtHL}(H] I9t&H;HCH9tH I9uH] HtHL}H]I9t&H;HCH9tH I9uH]HtHM9Lt IƘI$HtHA$xI$ I$ I$ I$ H9tI$ I$ H9tI$` I$p H9tI$@ I$P H9tI$ I$0 H9tI$ I$ H9tI$ I$ H9tI$ I$ H9tI$x I$ H9tI$X I$h H9tI$P I$` H9tI$0 I$@ H9tI$ I$ H9tA$tI$I$H9tI$I$H9tI$I$H9tI$hI$xH9tI$@I$PH9tI$ I$0H9tI$I$H9tI$I$H9tI$I$H9tI$I$H9tI$I$H9tI$`I$pH9tI$@I$PH9tA$I$xI$H9tI$XI$hH9tI$I$H9tI$xI$H9tI$I$(H9tI|$xI$H9tI|$8ID$HH9tI|$I(L9tH[]A\A]A^A_H[]A\A]A^A_fI$I$(H9tI$I$H9tI$I$H9tI$I$(H9tI$I$H9tI$I$(H9tI$I$H9tI$I$H9H>I$I$I$I$H96,AWAVIAUATIUSHHHOHHI)H)HHH4IH9LH$H]HMMH$III)MtHII9t LHLHL$L$HL$L$IODM)L9tLLLIMHtHLmLuL}H[]A\A]A^A_L<FfDHH9-HuME1E1>H=tGtDGPWuHHHHt HSHHHHtH߾ [HHHHt HSHHHHtH߾ [HHGH0Ht HHGH Ht Ht3ATIUSHHsLHkHHHu[]A\@USHHHHHdH%(HD$81HHHP(Ht$HHl$(HL$8dH3 %(u HHH[]AUATIUSHH_(Hu%DmHLMteHs(H{L#HkHtH=u‹EPUuHEHPE PU uHEHPHLMufIE I}1IHHI}IEIEL9tDH[]A\A]DHEHPE &HEHPz@H[]A\A]HAUATIUSHHHsLHk(LcHtH=t$mt]HLMuH[]A\A]fEPUuHEHPE PU uHEHPfDfDHEHPE AWAVAUATIUSHHMHH7HGHH)I)HHHL4L9)HIfffffffHL$H$H$HL$IMHLHL9HPLH(H)HHIt(L8fHHH HHHJHHHRHBH(H(H9tQHtBHHHHHJH9uo@AK 0 && num_blocks() > 0m_check_invariants()HAUATIUSIHHHsLHSHHkHу?H{0HC8Hs@H)HH)HH9wHHHH9t$H H5H=yDHtHHHjH[]A\A]H{0HC8LHH9tHpcfH H5H=USHH_HtQL@HCAHtHHK I9rHCE1HuEIu1HI9HGIGH[]fH_1H9_HtHHILEHH HSHw HHH{Ht[[AWAVIAUAT(USHHIHIHC HsIEIEImIE HAEHkHtKM(HHE HC EHCHCI\$LcHuHu"HmIHuHL[]A\A]A^A_@LHLHC@LLLIEgHLLHHHATUHSHHILU0IHMHEHtYE1LMHHHHHHtT$(HsSHT$8HSHT$@HS HF1HD$HHD$0HD$HHC(HEHD$8HD$@HH|$HtH$dH3 %(HH[]A\A]A^ÐLd$H$MH=utAT$HD$Ld$BAD$HT$LHH|$HtMtLHt$0UIT$HD$Ld$@IT$HD$Ld$CHCHCHC HC(@HD$HD$DHD$HD$0HHt$0HH|$HtHH|$PIHL9tLHH|$HHtMtLHATUHSHHILU0IHMHEHtYE1LMHHHHHHtparent()->child(node->position()) == nodeposition >= node->count()position < node->count()HLDOA8A@tjD9uRI@8AHL;Ht%HH9uopH9HujHȉWHH9tHD9AMcK8HuH8tHGHDLDOHH H5H=H H5H=H H5H=/srv/scratch/marinovg/spades-cloudspades-paper/assembler/ext/include/btree/safe_btree.hgeneration_ > 0AWAVAUATIUSH_IHHHdH%(HD$81ID$HI|$0LwL9L?MLDXE1DA9t]AML$HcHHL;Lv4_B HcAHHL9L:D9uA?8u.McJwD@H@8:DXE9tAID$ ED$(OIHHIu III9vMcMt$IPHoAD$IIJ<L!HHHHu HIT$8HHH9A|$HtjHL!A|$@HH8L@@tHHLL!Hp@HH8H9r>HIT$8>fDAEB`DHzLH9sHD$8dH3%(HH[]A\A]A^A_ÐID$ McD$(A|$@NHH9txWPI9|HHI$Lp LLt$(IHT$ LHD$H$HD$Hl$LHII>H98I|$ HHcPHHHH:L!H1HIT$8AD$@IL$0AL9Lq1ID$ AT$(MALHH!H9H H5H=H 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HHt$pH#HP@H@8HD$pIFHT$xHxIIFHt$(I8HxI}D$L9L`@Hh81Mt=HO HLHHRHtH9J sHRHuH9t H;N rHL9HuHfH*T$IH=H@HH9H|$ HL|$pLL|$H#HP@H@8HD$pIFHT$xHxI~Ht$(HHHT$HHD$PHHD$@D$HHD$hHT$XHT$`Hu@HD$HtWLHHD$pHHHQHuHL$XH f.HHQHuHUXHL$`HD$PHT$hHD$HDŽ$D$xHDŽ$HPH$H$Hs@HqH|$HL$8H|$8IH HHBHuH$L HHBHuLsXH$L$L$HEHLuXH8H9taLc@E1H8@Mt=HH HLHHRHtH9J sHRHuH9t H;N rIHH9uM)H|$LHt$PH|$MxWfI*L$^f(bHT$(Ht$ LIBHfHH H*XD$eLfHAL H*XLsXE1LHT$(Ht$ IeHT$(Ht$ LHxfH*\$HfHH H*XD$H|$Ht$PHHH=HH=HH5Hstatic const Config& config_common::config::get() [with Config = debruijn_graph::config::debruijn_config]barcode_index::BarcodeIndexInfoExtractor::const_intersection_iterator::reference barcode_index::BarcodeIndexInfoExtractor::const_intersection_iterator::operator*() [with barcode_entry_t = barcode_index::FrameEdgeEntry; barcode_index::BarcodeIndexInfoExtractor::const_intersection_iterator::reference = barcode_index::BarcodeIndexInfoExtractor::IntersectionData]void btree::btree_iterator::increment_slow() [with Node = const btree::btree_node >, std::less > >, std::allocator > >, 256> >; Reference = const restricted::pure_pointer >&; Pointer = const restricted::pure_pointer >*]btree::safe_btree_iterator::reference btree::safe_btree_iterator::operator*() const [with Tree = const btree::safe_btree >, std::less > >, std::allocator > >, 256> >; Iterator = btree::btree_iterator >, std::less > >, std::allocator > >, 256> >, const restricted::pure_pointer >&, const restricted::pure_pointer >*>; btree::safe_btree_iterator::reference = const restricted::pure_pointer >&]const Block& boost::dynamic_bitset::m_highest_block() const [with Block = long unsigned int; Allocator = std::allocator]boost::dynamic_bitset::~dynamic_bitset() [with Block = long unsigned int; Allocator = std::allocator]bool restricted::pure_pointer::operator==(const restricted::pure_pointer&) const [with T = 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