WEBSITE_FILES = website/alternate/doc/js/menu-path.js \ website/canvas-test.html \ website/css/component_bfile.css \ website/css/component_glam2motifs.css \ website/css/component_motifs.css \ website/css/component_sequences.css \ website/css/fasta-debug.css \ website/css/show_sequence_dbs.css \ website/css/status.css \ website/css/tomtom.css \ website/images/euclidean-eq.png \ website/images/logo_alignment.png \ website/images/pearson-eq.png \ website/images/sandelin-eq.png \ website/index.html \ website/js/alphabet_parser.js \ website/js/ame.js \ website/js/bg_parser.js \ website/js/centrimo.js \ website/js/component_bfile.js \ website/js/component_glam2motifs.js \ website/js/component_motifs.js \ website/js/component_sequences.js \ website/js/dreme.js \ website/js/fasta-debug.js \ website/js/fimo.js \ website/js/glam2.js \ website/js/glam2scan.js \ website/js/gomo.js \ website/js/mast.js \ website/js/mcast.js \ website/js/meme-chip.js \ website/js/meme.js \ website/js/menu-path.js \ website/js/momo.js \ website/js/motif_parser.js \ website/js/selectdb.js \ website/js/show_sequence_dbs.js \ website/js/site.js \ website/js/spamo.js \ website/js/status.js \ website/js/tomtom.js \ website/lib/JSAP-2.1.jar \ website/lib/JSAP.LICENSE \ website/lib/axis.LICENSE \ website/lib/axis.jar \ website/lib/cog-axis.jar \ website/lib/cog-jglobus.jar \ website/lib/cog.LICENSE \ website/lib/commons-discovery-0.5.jar \ website/lib/commons-discovery.LICENSE \ website/lib/commons-discovery.NOTICE \ website/lib/commons-io-2.4.jar \ website/lib/commons-io.LICENSE \ website/lib/commons-io.NOTICE \ website/lib/commons-logging-1.1.3.jar \ website/lib/commons-logging.LICENSE \ website/lib/commons-logging.NOTICE \ website/lib/commons-net-3.3.jar \ website/lib/commons-net.LICENSE \ website/lib/commons-net.NOTICE \ website/lib/javamail-1.4.3.jar \ website/lib/jaxrpc.jar \ website/lib/jsoup-1.7.3.jar \ website/lib/jsoup.LICENSE \ website/lib/jtar-1.1.jar \ website/lib/jtar.LICENSE \ website/lib/opal-ws-2.5.jar \ website/lib/sqlite-jdbc-3.7.2.jar \ website/lib/sqlite-jdbc.LICENSE \ website/lib/wsdl4j-1.6.3.jar \ website/lib/wsdl4j.LICENSE \ website/src/au/edu/uq/imb/memesuite/data/Alph.java \ website/src/au/edu/uq/imb/memesuite/data/AlphStd.java \ website/src/au/edu/uq/imb/memesuite/data/AlphType.java \ website/src/au/edu/uq/imb/memesuite/data/AlphabetDataSource.java \ website/src/au/edu/uq/imb/memesuite/data/Background.java \ website/src/au/edu/uq/imb/memesuite/data/MemeSuiteProperties.java \ website/src/au/edu/uq/imb/memesuite/data/MotifDataSource.java \ website/src/au/edu/uq/imb/memesuite/data/MotifInfo.java \ website/src/au/edu/uq/imb/memesuite/data/MotifStats.java \ website/src/au/edu/uq/imb/memesuite/data/NamedFileDataSource.java \ website/src/au/edu/uq/imb/memesuite/data/PsmDataSource.java \ website/src/au/edu/uq/imb/memesuite/data/SequenceDataSource.java \ website/src/au/edu/uq/imb/memesuite/data/SequenceInfo.java \ website/src/au/edu/uq/imb/memesuite/data/SequenceStats.java \ website/src/au/edu/uq/imb/memesuite/db/Category.java \ website/src/au/edu/uq/imb/memesuite/db/DBList.java \ website/src/au/edu/uq/imb/memesuite/db/GomoDB.java \ website/src/au/edu/uq/imb/memesuite/db/GomoDBList.java \ website/src/au/edu/uq/imb/memesuite/db/GomoDBSecondary.java \ website/src/au/edu/uq/imb/memesuite/db/Listing.java \ website/src/au/edu/uq/imb/memesuite/db/MotifDB.java \ website/src/au/edu/uq/imb/memesuite/db/MotifDBFile.java \ website/src/au/edu/uq/imb/memesuite/db/MotifDBList.java \ website/src/au/edu/uq/imb/memesuite/db/SQL.java \ website/src/au/edu/uq/imb/memesuite/db/SequenceDB.java \ website/src/au/edu/uq/imb/memesuite/db/SequenceDBList.java \ website/src/au/edu/uq/imb/memesuite/db/SequencePrior.java \ website/src/au/edu/uq/imb/memesuite/db/SequenceVersion.java \ website/src/au/edu/uq/imb/memesuite/io/alph/AlphParser.java \ website/src/au/edu/uq/imb/memesuite/io/fasta/FastaException.java \ website/src/au/edu/uq/imb/memesuite/io/fasta/FastaHandler.java \ website/src/au/edu/uq/imb/memesuite/io/fasta/FastaParseException.java \ website/src/au/edu/uq/imb/memesuite/io/fasta/FastaParser.java \ website/src/au/edu/uq/imb/memesuite/io/fasta/FastaWriter.java \ website/src/au/edu/uq/imb/memesuite/io/html/HDataEvent.java \ website/src/au/edu/uq/imb/memesuite/io/html/HDataEventType.java \ website/src/au/edu/uq/imb/memesuite/io/html/HDataHandler.java \ website/src/au/edu/uq/imb/memesuite/io/html/HDataHandlerAdapter.java \ website/src/au/edu/uq/imb/memesuite/io/html/HDataParseException.java \ website/src/au/edu/uq/imb/memesuite/io/html/HDataParser.java \ website/src/au/edu/uq/imb/memesuite/io/html/HDataPullParser.java \ website/src/au/edu/uq/imb/memesuite/io/json/JsonHandler.java \ website/src/au/edu/uq/imb/memesuite/io/json/JsonHandlerAdapter.java \ website/src/au/edu/uq/imb/memesuite/io/json/JsonParser.java \ website/src/au/edu/uq/imb/memesuite/io/json/JsonToken.java \ website/src/au/edu/uq/imb/memesuite/io/json/JsonType.java \ website/src/au/edu/uq/imb/memesuite/servlet/Ame.java \ website/src/au/edu/uq/imb/memesuite/servlet/Centrimo.java \ website/src/au/edu/uq/imb/memesuite/servlet/ConfigurationLoader.java \ website/src/au/edu/uq/imb/memesuite/servlet/Dreme.java \ website/src/au/edu/uq/imb/memesuite/servlet/EchoFile.java \ website/src/au/edu/uq/imb/memesuite/servlet/Fimo.java \ website/src/au/edu/uq/imb/memesuite/servlet/Glam2.java \ website/src/au/edu/uq/imb/memesuite/servlet/Glam2Request.java \ website/src/au/edu/uq/imb/memesuite/servlet/Glam2scan.java \ website/src/au/edu/uq/imb/memesuite/servlet/Gomo.java \ website/src/au/edu/uq/imb/memesuite/servlet/JobStatus.java \ website/src/au/edu/uq/imb/memesuite/servlet/LogoRequest.java \ website/src/au/edu/uq/imb/memesuite/servlet/Mast.java \ website/src/au/edu/uq/imb/memesuite/servlet/Mcast.java \ website/src/au/edu/uq/imb/memesuite/servlet/Meme.java \ website/src/au/edu/uq/imb/memesuite/servlet/MemeRequest.java \ website/src/au/edu/uq/imb/memesuite/servlet/Memechip.java \ website/src/au/edu/uq/imb/memesuite/servlet/Momo.java \ website/src/au/edu/uq/imb/memesuite/servlet/PermanentRedirect.java \ website/src/au/edu/uq/imb/memesuite/servlet/ShowGomoDBs.java \ website/src/au/edu/uq/imb/memesuite/servlet/ShowMotifDBs.java \ website/src/au/edu/uq/imb/memesuite/servlet/ShowSequenceDBs.java \ website/src/au/edu/uq/imb/memesuite/servlet/Spamo.java \ website/src/au/edu/uq/imb/memesuite/servlet/SubmitJob.java \ website/src/au/edu/uq/imb/memesuite/servlet/Tomtom.java \ website/src/au/edu/uq/imb/memesuite/servlet/TomtomRequest.java \ website/src/au/edu/uq/imb/memesuite/servlet/util/ComponentAdvancedOptions.java \ website/src/au/edu/uq/imb/memesuite/servlet/util/ComponentBfile.java \ website/src/au/edu/uq/imb/memesuite/servlet/util/ComponentFooter.java \ website/src/au/edu/uq/imb/memesuite/servlet/util/ComponentGlam2Motifs.java \ website/src/au/edu/uq/imb/memesuite/servlet/util/ComponentGomo.java \ website/src/au/edu/uq/imb/memesuite/servlet/util/ComponentHeader.java \ website/src/au/edu/uq/imb/memesuite/servlet/util/ComponentJobDetails.java \ website/src/au/edu/uq/imb/memesuite/servlet/util/ComponentMotifs.java \ website/src/au/edu/uq/imb/memesuite/servlet/util/ComponentSequenceAlphabet.java \ website/src/au/edu/uq/imb/memesuite/servlet/util/ComponentSequences.java \ website/src/au/edu/uq/imb/memesuite/servlet/util/ComponentSubmitReset.java \ website/src/au/edu/uq/imb/memesuite/servlet/util/FeedbackFastaWriter.java \ website/src/au/edu/uq/imb/memesuite/servlet/util/FeedbackHandler.java \ website/src/au/edu/uq/imb/memesuite/servlet/util/Glam2Validator.java \ website/src/au/edu/uq/imb/memesuite/servlet/util/MotifValidator.java \ website/src/au/edu/uq/imb/memesuite/servlet/util/PageComponent.java \ website/src/au/edu/uq/imb/memesuite/servlet/util/StreamCopier.java \ website/src/au/edu/uq/imb/memesuite/servlet/util/WebUtils.java \ website/src/au/edu/uq/imb/memesuite/template/HTMLSub.java \ website/src/au/edu/uq/imb/memesuite/template/HTMLSubGenerator.java \ website/src/au/edu/uq/imb/memesuite/template/HTMLTemplate.java \ website/src/au/edu/uq/imb/memesuite/template/HTMLTemplateCache.java \ website/src/au/edu/uq/imb/memesuite/updatedb/AbstractFtpSource.java \ website/src/au/edu/uq/imb/memesuite/updatedb/EPDUpdater.java \ website/src/au/edu/uq/imb/memesuite/updatedb/EPDUpdater.properties \ website/src/au/edu/uq/imb/memesuite/updatedb/EnsemblBacteriaUpdater.java \ website/src/au/edu/uq/imb/memesuite/updatedb/EnsemblBacteriaUpdater.properties \ website/src/au/edu/uq/imb/memesuite/updatedb/EnsemblFungiUpdater.java \ website/src/au/edu/uq/imb/memesuite/updatedb/EnsemblFungiUpdater.properties \ website/src/au/edu/uq/imb/memesuite/updatedb/EnsemblMetazoaUpdater.java \ website/src/au/edu/uq/imb/memesuite/updatedb/EnsemblMetazoaUpdater.properties \ website/src/au/edu/uq/imb/memesuite/updatedb/EnsemblPlantsUpdater.java \ website/src/au/edu/uq/imb/memesuite/updatedb/EnsemblPlantsUpdater.properties \ website/src/au/edu/uq/imb/memesuite/updatedb/EnsemblProtistsUpdater.java \ website/src/au/edu/uq/imb/memesuite/updatedb/EnsemblProtistsUpdater.properties \ website/src/au/edu/uq/imb/memesuite/updatedb/EnsemblUpdater.java \ website/src/au/edu/uq/imb/memesuite/updatedb/EnsemblUpdater.properties \ website/src/au/edu/uq/imb/memesuite/updatedb/FtpFileListUpdater.java \ website/src/au/edu/uq/imb/memesuite/updatedb/FtpFileListUpdater.properties \ website/src/au/edu/uq/imb/memesuite/updatedb/FtpSource.java \ website/src/au/edu/uq/imb/memesuite/updatedb/GenbankUpdater.java \ website/src/au/edu/uq/imb/memesuite/updatedb/GenbankUpdater.properties \ website/src/au/edu/uq/imb/memesuite/updatedb/PatternFileFilter.java \ website/src/au/edu/uq/imb/memesuite/updatedb/RsatUpdater.java \ website/src/au/edu/uq/imb/memesuite/updatedb/RsatUpdater.properties \ website/src/au/edu/uq/imb/memesuite/updatedb/SequenceProcessor.java \ website/src/au/edu/uq/imb/memesuite/updatedb/SequenceUpdater.java \ website/src/au/edu/uq/imb/memesuite/updatedb/Source.java \ website/src/au/edu/uq/imb/memesuite/updatedb/UCSCGenomeUpdater.java \ website/src/au/edu/uq/imb/memesuite/updatedb/UCSCGenomeUpdater.properties \ website/src/au/edu/uq/imb/memesuite/updatedb/UpdateSequenceDB.java \ website/src/au/edu/uq/imb/memesuite/updatedb/UpdateSequenceDB.properties \ website/src/au/edu/uq/imb/memesuite/util/BMString.java \ website/src/au/edu/uq/imb/memesuite/util/FileCoord.java \ website/src/au/edu/uq/imb/memesuite/util/GlobFilter.java \ website/src/au/edu/uq/imb/memesuite/util/JsonWr.java \ website/src/au/edu/uq/imb/memesuite/util/MultiSourceStatus.java \ website/src/au/edu/uq/imb/memesuite/util/Progress.java \ website/src/au/edu/uq/imb/memesuite/util/SampleStats.java \ website/src/au/edu/uq/imb/memesuite/util/SemanticVersion.java \ website/templates/ame.tmpl \ website/templates/ame_verify.tmpl \ website/templates/centrimo.tmpl \ website/templates/centrimo_verify.tmpl \ website/templates/component_adv_btn.tmpl \ website/templates/component_bfile.tmpl \ website/templates/component_footer.tmpl \ website/templates/component_glam2motifs.tmpl \ website/templates/component_gomo.tmpl \ website/templates/component_header.tmpl \ website/templates/component_job_details.tmpl \ website/templates/component_motifs.tmpl \ website/templates/component_sequences.tmpl \ website/templates/component_submit_reset.tmpl \ website/templates/dreme.tmpl \ website/templates/dreme_verify.tmpl \ website/templates/email.tmpl \ website/templates/fimo.tmpl \ website/templates/fimo_verify.tmpl \ website/templates/glam2.tmpl \ website/templates/glam2_verify.tmpl \ website/templates/glam2scan.tmpl \ website/templates/glam2scan_verify.tmpl \ website/templates/gomo.tmpl \ website/templates/gomo_verify.tmpl \ website/templates/mast.tmpl \ website/templates/mast_verify.tmpl \ website/templates/mcast.tmpl \ website/templates/mcast_verify.tmpl \ website/templates/meme-chip.tmpl \ website/templates/meme-chip_verify.tmpl \ website/templates/meme.tmpl \ website/templates/meme_verify.tmpl \ website/templates/momo.tmpl \ website/templates/momo_verify.tmpl \ website/templates/request_redirect.tmpl \ website/templates/show_gomo_dbs.tmpl \ website/templates/show_motif_dbs.tmpl \ website/templates/show_sequence_dbs.tmpl \ website/templates/spamo.tmpl \ website/templates/spamo_verify.tmpl \ website/templates/status.tmpl \ website/templates/tomtom.tmpl \ website/templates/tomtom_verify.tmpl \ website/templates/verify.tmpl \ website/templates/whine.tmpl \ website/web.xml