prim_db	prim_id	prim_alt	prim_cons	sec_db	sec_id	sec_alt	sec_cons	trim_left	trim_right	red_db	red_id	red_alt	E-value	gap	orient	count	total	adj_p-value	p-value
Klf1	MA0493.1	Klf1	RRCCACACCCW	JASPAR_CORE_2014	MA0140.2	TAL1::GATA1	MTTATCWSNNNNNHVCAG	1	0	.	.	.	5.47e-02	2	7	8	141	8.51e-09	7.66e-08
Klf1	MA0493.1	Klf1	RRCCACACCCW	JASPAR_CORE_2014	MA0140.2	TAL1::GATA1	MTTATCWSNNNNNHVCAG	1	0	.	.	.	5.47e-02	2	3	5	141	8.79e-07	7.91e-06
Klf1	MA0493.1	Klf1	RRCCACACCCW	JASPAR_CORE_2014	MA0140.2	TAL1::GATA1	MTTATCWSNNNNNHVCAG	1	0	.	.	.	5.47e-02	2	8	8	141	1.40e-06	1.26e-05
Klf1	MA0493.1	Klf1	RRCCACACCCW	JASPAR_CORE_2014	MA0164.1	Nr2e3	CAAGCTT	0	0	.	.	.	6.15e+00	68	2	4	71	8.94e-07	8.04e-06
Klf1	MA0493.1	Klf1	RRCCACACCCW	JASPAR_CORE_2014	MA0015.1	Cf2_II	RTATATRTAB	0	1	.	.	.	9.96e+00	55	5	5	84	1.47e-06	1.33e-05
Klf1	MA0493.1	Klf1	RRCCACACCCW	JASPAR_CORE_2014	MA0015.1	Cf2_II	RTATATRTAB	0	1	.	.	.	9.96e+00	55	0	4	84	1.84e-06	1.66e-05
##
# Detailed descriptions of columns in this file:
#
# prim_db:	The name of the database (file name) that contains the primary motif.
# prim_id:	A name for the primary motif that is unique in the motif database file.
# prim_alt:	An alternate name of the primary motif that may be provided
#		in the motif database file.
# prim_cons:	A consensus sequence computed from the primary motif (see doc/motif-consensus.html).
# sec_db:	The name of the database (file name) that contains the secondary motif.
# sec_id:	A name for the motif that is unique in the motif database file.
# sec_alt:	An alternate name of the secondary motif that may be provided
#		in the motif database file.
# sec_cons:	A consensus sequence computed from the secondary motif (see doc/motif-consensus.html).
# trim_left:	Number of positions trimmed from left of secondary motif
# trim_right:	Number of positions trimmed from right of secondary motif
# If the next three fields are not blank, the motif is redundant with a more significant ('parent') motif.
# red_db:	The database (file name) that contains the parent motif.
# red_id:	A name for the parent motif that is unique in the motif database file.
# red_alt:	An alternate name of the parent motif that may be provided
#		in the motif database file.
# E-value:	The expected number motifs that would have least one
#		spacing as enriched as the best spacing for this secondary.
#		The E-value is the best spacing p-value multiplied by the number of motifs in the
#		input database(s).
# gap:		The distance between the edge of the primary and the (trimmed) secondary motif.
# orient:	The (combination) of quadrants for which occurrences
#		of this spacing are combined.
# count:	The number of occurrences of the secondary motif with the
#		given spacing and orientation to the primary motif.
# total:	The total number of occurrences of the secondary motif within the
#		margins around the best primary motif occurrence.
# adj_p-value:	The p-value of the gap and orientation, adjusted for
#		nine combinations of quadrants times the number of gaps tested
#		(as controlled by the -range switch).
# p-value:	The p-value of the gap and orientation adjusted only for the number of gaps tested.