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website/src/au/edu/uq/imb/memesuite/template/HTMLTemplateCache.java \ website/src/au/edu/uq/imb/memesuite/updatedb/AbstractFtpSource.java \ website/src/au/edu/uq/imb/memesuite/updatedb/EPDUpdater.java \ website/src/au/edu/uq/imb/memesuite/updatedb/EPDUpdater.properties \ website/src/au/edu/uq/imb/memesuite/updatedb/EnsemblBacteriaUpdater.java \ website/src/au/edu/uq/imb/memesuite/updatedb/EnsemblBacteriaUpdater.properties \ website/src/au/edu/uq/imb/memesuite/updatedb/EnsemblFungiUpdater.java \ website/src/au/edu/uq/imb/memesuite/updatedb/EnsemblFungiUpdater.properties \ website/src/au/edu/uq/imb/memesuite/updatedb/EnsemblMetazoaUpdater.java \ website/src/au/edu/uq/imb/memesuite/updatedb/EnsemblMetazoaUpdater.properties \ website/src/au/edu/uq/imb/memesuite/updatedb/EnsemblPlantsUpdater.java \ website/src/au/edu/uq/imb/memesuite/updatedb/EnsemblPlantsUpdater.properties \ website/src/au/edu/uq/imb/memesuite/updatedb/EnsemblProtistsUpdater.java \ website/src/au/edu/uq/imb/memesuite/updatedb/EnsemblProtistsUpdater.properties \ website/src/au/edu/uq/imb/memesuite/updatedb/EnsemblUpdater.java \ website/src/au/edu/uq/imb/memesuite/updatedb/EnsemblUpdater.properties \ website/src/au/edu/uq/imb/memesuite/updatedb/FtpFileListUpdater.java \ website/src/au/edu/uq/imb/memesuite/updatedb/FtpFileListUpdater.properties \ website/src/au/edu/uq/imb/memesuite/updatedb/FtpSource.java \ website/src/au/edu/uq/imb/memesuite/updatedb/GenbankUpdater.java \ website/src/au/edu/uq/imb/memesuite/updatedb/GenbankUpdater.properties \ website/src/au/edu/uq/imb/memesuite/updatedb/PatternFileFilter.java \ website/src/au/edu/uq/imb/memesuite/updatedb/RsatUpdater.java \ website/src/au/edu/uq/imb/memesuite/updatedb/RsatUpdater.properties \ website/src/au/edu/uq/imb/memesuite/updatedb/SequenceProcessor.java \ website/src/au/edu/uq/imb/memesuite/updatedb/SequenceUpdater.java \ website/src/au/edu/uq/imb/memesuite/updatedb/Source.java \ website/src/au/edu/uq/imb/memesuite/updatedb/UCSCGenomeUpdater.java \ website/src/au/edu/uq/imb/memesuite/updatedb/UCSCGenomeUpdater.properties \ website/src/au/edu/uq/imb/memesuite/updatedb/UpdateSequenceDB.java \ website/src/au/edu/uq/imb/memesuite/updatedb/UpdateSequenceDB.properties \ website/src/au/edu/uq/imb/memesuite/util/BMString.java \ website/src/au/edu/uq/imb/memesuite/util/FileCoord.java \ website/src/au/edu/uq/imb/memesuite/util/GlobFilter.java \ website/src/au/edu/uq/imb/memesuite/util/JsonWr.java \ website/src/au/edu/uq/imb/memesuite/util/MultiSourceStatus.java \ website/src/au/edu/uq/imb/memesuite/util/Progress.java \ website/src/au/edu/uq/imb/memesuite/util/SampleStats.java \ website/src/au/edu/uq/imb/memesuite/util/SemanticVersion.java \ website/templates/ame.tmpl \ website/templates/ame_verify.tmpl \ website/templates/centrimo.tmpl \ website/templates/centrimo_verify.tmpl \ website/templates/component_adv_btn.tmpl \ website/templates/component_bfile.tmpl \ 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ARCHIVE_DATE: hg log -r "min(present(meme_$(VERSION)_0) or .)" --template "{date|date}\n" > ARCHIVE_DATE ARCHIVE_REVISION: hg log -r "min(present(meme_$(VERSION)_0) or .)" --template "{node}\n" > ARCHIVE_REVISION MemeSuite.properties: MemeSuite.properties.in Makefile $(SED) $(SEDSPEC) $< > $@ install-data-hook: dbdir @WEBSITE_TRUE@ $(ANT) install @WEBSERVICE_TRUE@@WEBSITE_FALSE@ $(ANT) install dbdir: mkdir -p $(DESTDIR)$(MEME_DB) all-local: @WEBSITE_TRUE@ $(ANT) compile @WEBSERVICE_TRUE@@WEBSITE_FALSE@ $(ANT) compile install-data-local: mkdir -p $(DESTDIR)$(MEME_LOGS) chmod a+w $(DESTDIR)$(MEME_LOGS) distclean-local: clean-local clean-local: clean-ac @WEBSITE_TRUE@ $(ANT) clean @WEBSERVICE_TRUE@@WEBSITE_FALSE@ $(ANT) clean clean-ac: rm -rf autom4te.cache test: cp -f src/parallel/meme src/meme; \ cp -f src/parallel/momo src/momo; \ cd tests/scripts; $(MAKE) check # Do not include .hg directories in the distribution # Update the archive revision and date to refer to the changeset tagged as # the original release. Hopefully they will already be set correctly. dist-hook: rm -rf `find $(distdir) -name .hg` chmod u+w $(distdir)/ARCHIVE_REVISION $(distdir)/ARCHIVE_DATE hg log -r "min(present(meme_$(VERSION)_0) or .)" --template "{date|date}\n" > $(distdir)/ARCHIVE_DATE hg log -r "min(present(meme_$(VERSION)_0) or .)" --template "{node}\n" > $(distdir)/ARCHIVE_REVISION Portfile: dist sha256=$(shell openssl dgst -sha256 $(DIST_ARCHIVES) | sed -e 's/^.*= //') @sed -e 's/@SHA256@/$(sha256)/' \ -e 's/@ARCHIVE@/$(DIST_ARCHIVES)/' < etc/Portfile.in > Portfile @mkdir -p ~/ports/science/memesuite @cp Portfile ~/ports/science/memesuite @portindex -f -o ~/ports ~/ports # Tell versions [3.59,3.63) of GNU make to not export all variables. # Otherwise a system limit (for SysV at least) may be exceeded. .NOEXPORT: