Processing Vertebrates (In vivo and in silico) ... ...Nothing to do for this database. Processing Human and Mouse (HOCOMOCO v10) ... ...Nothing to do for this database. Processing Human and Mouse (In silico) ... ...Nothing to do for this database. Processing Human and Mouse (Jolma2013) ... Creating MEME file with command: taipale2meme -nc 1 -nc 3 -url "http://floresta.eead.csic.es/footprintdb/index.php?db=HumanTF:1.0&motif=MOTIF_NAME" < ../Taipale/Jolma2013/mmc3.txt > EUKARYOTE/jolma2013.meme Processing Human and Mouse (Swiss Regulon) ... Creating MEME file with command: set url = "http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3531101"; transfac2meme -use_name -url "$url" ../SwissRegulon/hg19 > EUKARYOTE/SwissRegulon_human_and_mouse.meme Converted 190 motifs. Skipped 0 motifs. 0 conversion errors. Processing Human and Mouse (Jolma2010) ... Creating MEME file with command: perl -e 'chdir "../Taipale/Jolma2010/"; foreach (glob("*_SELEX-profile.pfm")) {/^(\w*)(_SELEX-profile).pfm/; print "$1$2 X $1\n";}' > ../Taipale/Jolma2010/matrix_list.txt; jaspar2meme -pfm -logodds ../Taipale/Jolma2010 > EUKARYOTE/jolma2010.meme Found matrix_list.txt file. Reading in motif names. Processing Human and Mouse (MacIsaac THEME) ... Creating MEME file with command: tamo2meme -logodds -url "http://fraenkel.mit.edu/THEME/logo_tables/restricted_profiles.html" ../macisaac_theme/v1.tamo > EUKARYOTE/macisaac_theme.v1.meme Processing Homeodomains (Berger et al.) ... Creating MEME file with command: uniprobe2meme -logodds -sg ../uniprobe/uniprobe_screen_grab -sp "Berger et al., Cell 2008" -url "http://the_brain.bwh.harvard.edu/uniprobe/details2.php?id=MOTIF_NAME" < ../uniprobe/homeo_pwm_all.txt > EUKARYOTE/homeodomain.meme Converted 178 motifs. Skipped 0 motifs. Processing ETS factors (Wei et al. 2010) ... Creating MEME file with command: taipale2meme -logodds -url "http://dx.doi.org/10.1038/emboj.2010.106" < ../Taipale/Wei2010/sheet1.csv > EUKARYOTE/wei2010_human_mws.meme ; taipale2meme -logodds -url "http://dx.doi.org/10.1038/emboj.2010.106" < ../Taipale/Wei2010/sheet2.csv > EUKARYOTE/wei2010_mouse_mws.meme ; taipale2meme -logodds -url "http://dx.doi.org/10.1038/emboj.2010.106" < ../Taipale/Wei2010/sheet3.csv > EUKARYOTE/wei2010_mouse_pbm.meme Processing UniPROBE/BEEML-PBM (Zhao and Stormo 2011) ... Creating MEME file with command: beeml2meme -logodds -sg ../uniprobe/uniprobe_screen_grab -url "http://the_brain.bwh.harvard.edu/uniprobe/details2.php?id=MOTIF_NAME" ../Zhao2011/*.txt > EUKARYOTE/zhao2011.meme Converted 594 motifs. 0 conversion errors. Processing Mammalian GLIs/TCF7L2/TCF4 (Hallikas et al. 2006) ... Creating MEME file with command: taipale2meme -logodds -url "http://dx.doi.org/10.1016/j.cell.2005.10.042" < ../Taipale/Hallikas2006/mmc2.csv > EUKARYOTE/hallikas2006.meme Processing JASPAR Vertebrates and UniPROBE Mouse ... ...Nothing to do for this database. Processing JASPAR CORE and UniPROBE Mouse ... ...Nothing to do for this database. Processing CollecTF (Bacterial TF motifs) ... Creating MEME file with command: jaspar2meme -bundle -url "http://www.collectf.org/MOTIF_NAME" ../CollecTF/collectf_meme.cm > PROKARYOTE/collectf.meme Processing Prokaryotes (Prodoric Release 8.9) ... Creating MEME file with command: jaspar2meme -pfm -logodds -url "http://prodoric.tu-bs.de/matrix.php?matrix_acc=MOTIF_NAME" ../prodoric/prodoric_pfms > PROKARYOTE/prodoric.meme Found matrix_list.txt file. Reading in motif names. Processing Prokaryotes (RegTransBase v4) ... Creating MEME file with command: meme2meme -logodds -url "http://regtransbase.lbl.gov/cgi-bin/regtransbase?page=alignment_browse" ../RegTransBase/regtransbase_alignments_download/*.meme > PROKARYOTE/regtransbase.meme Processing Combined Prokaryotes ... ...Nothing to do for this database. Processing JASPAR CORE (2016) ... Creating MEME file with command: jaspar2meme -bundle -url "http://jaspar.genereg.net?ID=MOTIF_NAME&rm=present&collection=CORE" ../jaspar_2016/JASPAR_CORE/pfm/nonredundant/pfm_all.txt > JASPAR/JASPAR_CORE_2016.meme Processing JASPAR CORE (2016) vertebrates ... Creating MEME file with command: jaspar2meme -bundle -url "http://jaspar.genereg.net?ID=MOTIF_NAME&rm=present&collection=CORE" ../jaspar_2016/JASPAR_CORE/pfm/nonredundant/pfm_vertebrates.txt > JASPAR/JASPAR_CORE_2016_vertebrates.meme Processing JASPAR CORE (2016) fungi ... Creating MEME file with command: jaspar2meme -bundle -url "http://jaspar.genereg.net?ID=MOTIF_NAME&rm=present&collection=CORE" ../jaspar_2016/JASPAR_CORE/pfm/nonredundant/pfm_fungi.txt > JASPAR/JASPAR_CORE_2016_fungi.meme Processing JASPAR CORE (2016) insects ... Creating MEME file with command: jaspar2meme -bundle -url "http://jaspar.genereg.net?ID=MOTIF_NAME&rm=present&collection=CORE" ../jaspar_2016/JASPAR_CORE/pfm/nonredundant/pfm_insects.txt > JASPAR/JASPAR_CORE_2016_insects.meme Processing JASPAR CORE (2016) nematodes ... Creating MEME file with command: jaspar2meme -bundle -url "http://jaspar.genereg.net?ID=MOTIF_NAME&rm=present&collection=CORE" ../jaspar_2016/JASPAR_CORE/pfm/nonredundant/pfm_nematodes.txt > JASPAR/JASPAR_CORE_2016_nematodes.meme Processing JASPAR CORE (2016) plants ... Creating MEME file with command: jaspar2meme -bundle -url "http://jaspar.genereg.net?ID=MOTIF_NAME&rm=present&collection=CORE" ../jaspar_2016/JASPAR_CORE/pfm/nonredundant/pfm_plants.txt > JASPAR/JASPAR_CORE_2016_plants.meme Processing JASPAR CORE (2016) urochordates ... Creating MEME file with command: jaspar2meme -bundle -url "http://jaspar.genereg.net?ID=MOTIF_NAME&rm=present&collection=CORE" ../jaspar_2016/JASPAR_CORE/pfm/nonredundant/pfm_urochordates.txt > JASPAR/JASPAR_CORE_2016_urochordates.meme Processing JASPAR CORE (2014) ... Creating MEME file with command: jaspar2meme -bundle -url "http://jaspar2014.genereg.net?ID=MOTIF_NAME&rm=present&collection=CORE" ../jaspar_2014/JASPAR_CORE/pfm/nonredundant/pfm_all.txt > JASPAR/JASPAR_CORE_2014.meme Processing JASPAR CORE (2014) vertebrates ... Creating MEME file with command: jaspar2meme -bundle -url "http://jaspar2014.genereg.net?ID=MOTIF_NAME&rm=present&collection=CORE" ../jaspar_2014/JASPAR_CORE/pfm/nonredundant/pfm_vertebrates.txt > JASPAR/JASPAR_CORE_2014_vertebrates.meme Processing JASPAR CORE (2014) fungi ... Creating MEME file with command: jaspar2meme -bundle -url "http://jaspar2014.genereg.net?ID=MOTIF_NAME&rm=present&collection=CORE" ../jaspar_2014/JASPAR_CORE/pfm/nonredundant/pfm_fungi.txt > JASPAR/JASPAR_CORE_2014_fungi.meme Processing JASPAR CORE (2014) insects ... Creating MEME file with command: jaspar2meme -bundle -url "http://jaspar2014.genereg.net?ID=MOTIF_NAME&rm=present&collection=CORE" ../jaspar_2014/JASPAR_CORE/pfm/nonredundant/pfm_insects.txt > JASPAR/JASPAR_CORE_2014_insects.meme Processing JASPAR CORE (2014) nematodes ... Creating MEME file with command: jaspar2meme -bundle -url "http://jaspar2014.genereg.net?ID=MOTIF_NAME&rm=present&collection=CORE" ../jaspar_2014/JASPAR_CORE/pfm/nonredundant/pfm_nematodes.txt > JASPAR/JASPAR_CORE_2014_nematodes.meme Processing JASPAR CORE (2014) plants ... Creating MEME file with command: jaspar2meme -bundle -url "http://jaspar2014.genereg.net?ID=MOTIF_NAME&rm=present&collection=CORE" ../jaspar_2014/JASPAR_CORE/pfm/nonredundant/pfm_plants.txt > JASPAR/JASPAR_CORE_2014_plants.meme Processing JASPAR CORE (2014) urochordates ... Creating MEME file with command: jaspar2meme -bundle -url "http://jaspar2014.genereg.net?ID=MOTIF_NAME&rm=present&collection=CORE" ../jaspar_2014/JASPAR_CORE/pfm/nonredundant/pfm_urochordates.txt > JASPAR/JASPAR_CORE_2014_urochordates.meme Processing JASPAR PHYLOFACTS ... Creating MEME file with command: jaspar2meme -pfm -logodds -url "http://jaspar.genereg.net?ID=MOTIF_NAME&rm=present&collection=PHYLOFACTS" ../jaspar_2008/JASPAR_PHYLOFACTS_2008 > JASPAR/JASPAR_PHYLOFACTS_2008.meme Found matrix_list.txt file. Reading in motif names. Processing JASPAR FAM ... Creating MEME file with command: jaspar2meme -pfm -logodds -url "http://jaspar.genereg.net?ID=MOTIF_NAME&rm=present&collection=FAM" ../jaspar_2008/JASPAR_FAM_2008 > JASPAR/JASPAR_FAM_2008.meme Found matrix_list.txt file. Reading in motif names. Processing JASPAR POLII ... Creating MEME file with command: jaspar2meme -pfm -logodds -url "http://jaspar.genereg.net?ID=MOTIF_NAME&rm=present&collection=POLII" ../jaspar_2008/JASPAR_POLII_2008 > JASPAR/JASPAR_POLII_2008.meme Found matrix_list.txt file. Reading in motif names. Processing JASPAR CNE ... Creating MEME file with command: jaspar2meme -pfm -logodds -url "http://jaspar.genereg.net?ID=MOTIF_NAME&rm=present&collection=CNE" ../jaspar_2008/JASPAR_CNE_2008 > JASPAR/JASPAR_CNE_2008.meme Found matrix_list.txt file. Reading in motif names. Processing JASPAR SPLICE ... Creating MEME file with command: jaspar2meme -pfm -logodds -url "http://jaspar.genereg.net?ID=MOTIF_NAME&rm=present&collection=SPLICE" ../jaspar_2008/JASPAR_SPLICE_2008 > JASPAR/JASPAR_SPLICE_2008.meme Found matrix_list.txt file. Reading in motif names. Processing JASPAR CORE REDUNDANT (2016) ... Creating MEME file with command: jaspar2meme -bundle -url "http://jaspar.genereg.net?ID=MOTIF_NAME&rm=present&collection=CORE" ../jaspar_2016/JASPAR_CORE/pfm/redundant/pfm_all.txt > JASPAR/JASPAR_CORE_REDUNDANT_2016.meme Processing JASPAR CORE REDUNDANT (2016) vertebrates ... Creating MEME file with command: jaspar2meme -bundle -url "http://jaspar.genereg.net?ID=MOTIF_NAME&rm=present&collection=CORE" ../jaspar_2016/JASPAR_CORE/pfm/redundant/pfm_vertebrates.txt > JASPAR/JASPAR_CORE_REDUNDANT_2016_vertebrates.meme Processing JASPAR CORE REDUNDANT (2016) fungi ... Creating MEME file with command: jaspar2meme -bundle -url "http://jaspar.genereg.net?ID=MOTIF_NAME&rm=present&collection=CORE" ../jaspar_2016/JASPAR_CORE/pfm/redundant/pfm_fungi.txt > JASPAR/JASPAR_CORE_REDUNDANT_2016_fungi.meme Processing JASPAR CORE REDUNDANT (2016) insects ... Creating MEME file with command: jaspar2meme -bundle -url "http://jaspar.genereg.net?ID=MOTIF_NAME&rm=present&collection=CORE" ../jaspar_2016/JASPAR_CORE/pfm/redundant/pfm_insects.txt > JASPAR/JASPAR_CORE_REDUNDANT_2016_insects.meme Processing JASPAR CORE REDUNDANT (2016) nematodes ... Creating MEME file with command: jaspar2meme -bundle -url "http://jaspar.genereg.net?ID=MOTIF_NAME&rm=present&collection=CORE" ../jaspar_2016/JASPAR_CORE/pfm/redundant/pfm_nematodes.txt > JASPAR/JASPAR_CORE_REDUNDANT_2016_nematodes.meme Processing JASPAR CORE REDUNDANT (2016) plants ... Creating MEME file with command: jaspar2meme -bundle -url "http://jaspar.genereg.net?ID=MOTIF_NAME&rm=present&collection=CORE" ../jaspar_2016/JASPAR_CORE/pfm/redundant/pfm_plants.txt > JASPAR/JASPAR_CORE_REDUNDANT_2016_plants.meme Processing JASPAR CORE REDUNDANT (2016) urochordates ... Creating MEME file with command: jaspar2meme -bundle -url "http://jaspar.genereg.net?ID=MOTIF_NAME&rm=present&collection=CORE" ../jaspar_2016/JASPAR_CORE/pfm/redundant/pfm_urochordates.txt > JASPAR/JASPAR_CORE_REDUNDANT_2016_urochordates.meme Processing JASPAR CORE REDUNDANT (2014) ... Creating MEME file with command: jaspar2meme -bundle -url "http://jaspar2014.genereg.net?ID=MOTIF_NAME&rm=present&collection=CORE" ../jaspar_2014/JASPAR_CORE/pfm/redundant/pfm_all.txt > JASPAR/JASPAR_CORE_REDUNDANT_2014.meme Processing JASPAR CORE REDUNDANT (2014) vertebrates ... Creating MEME file with command: jaspar2meme -bundle -url "http://jaspar2014.genereg.net?ID=MOTIF_NAME&rm=present&collection=CORE" ../jaspar_2014/JASPAR_CORE/pfm/redundant/pfm_vertebrates.txt > JASPAR/JASPAR_CORE_REDUNDANT_2014_vertebrates.meme Processing JASPAR CORE REDUNDANT (2014) fungi ... Creating MEME file with command: jaspar2meme -bundle -url "http://jaspar2014.genereg.net?ID=MOTIF_NAME&rm=present&collection=CORE" ../jaspar_2014/JASPAR_CORE/pfm/redundant/pfm_fungi.txt > JASPAR/JASPAR_CORE_REDUNDANT_2014_fungi.meme Processing JASPAR CORE REDUNDANT (2014) insects ... Creating MEME file with command: jaspar2meme -bundle -url "http://jaspar2014.genereg.net?ID=MOTIF_NAME&rm=present&collection=CORE" ../jaspar_2014/JASPAR_CORE/pfm/redundant/pfm_insects.txt > JASPAR/JASPAR_CORE_REDUNDANT_2014_insects.meme Processing JASPAR CORE REDUNDANT (2014) nematodes ... Creating MEME file with command: jaspar2meme -bundle -url "http://jaspar2014.genereg.net?ID=MOTIF_NAME&rm=present&collection=CORE" ../jaspar_2014/JASPAR_CORE/pfm/redundant/pfm_nematodes.txt > JASPAR/JASPAR_CORE_REDUNDANT_2014_nematodes.meme Processing JASPAR CORE REDUNDANT (2014) plants ... Creating MEME file with command: jaspar2meme -bundle -url "http://jaspar2014.genereg.net?ID=MOTIF_NAME&rm=present&collection=CORE" ../jaspar_2014/JASPAR_CORE/pfm/redundant/pfm_plants.txt > JASPAR/JASPAR_CORE_REDUNDANT_2014_plants.meme Processing JASPAR CORE REDUNDANT (2014) urochordates ... Creating MEME file with command: jaspar2meme -bundle -url "http://jaspar2014.genereg.net?ID=MOTIF_NAME&rm=present&collection=CORE" ../jaspar_2014/JASPAR_CORE/pfm/redundant/pfm_urochordates.txt > JASPAR/JASPAR_CORE_REDUNDANT_2014_urochordates.meme Processing TFBSshape (UniPROBE) ... Creating MEME file with command: sp_sci09="Badis et al., Science 2009"; sp_cell08="Berger et al., Cell 2008"; sp_nbt06="Berger et al., Nat Biotech 2006"; sp_gd09="Lesch et al., Genes Dev 2009"; sp_cr09="Scharer et al., Cancer Res 2009"; sp_gr09="Zhu et al., Genome Res 2009"; f_sci09="../uniprobe/104_pwms_all_concat.txt"; f_cell08="../uniprobe/homeo_pwm_all.txt"; f_nbt06="../uniprobe/NBT06_pwm_all.txt"; f_gd09="../uniprobe/GD09_pwm_all.txt"; f_cr09="../uniprobe/CR09_pwm_all.txt"; f_gr09="../uniprobe/GR09_pwm_all.txt"; out="TFBSshape/TFBSshape_UniPROBE.meme"; sg="../uniprobe/uniprobe_screen_grab"; url="http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=MOTIF_NAME&sourceDB=uniprobe"; uniprobe2meme -logodds -sg "$sg" -url "$url" -sp "$sp_sci09" < $f_sci09 > $out; uniprobe2meme -logodds -sg "$sg" -url "$url" -sp "$sp_cell08" < $f_cell08 >> $out; uniprobe2meme -logodds -sg "$sg" -url "$url" -sp "$sp_nbt06" < $f_nbt06 >> $out; uniprobe2meme -logodds -sg "$sg" -url "$url" -sp "$sp_gd09" < $f_gd09 >> $out; uniprobe2meme -logodds -sg "$sg" -url "$url" -sp "$sp_cr09" < $f_cr09 >> $out; uniprobe2meme -logodds -sg "$sg" -url "$url" -sp "$sp_gr09" < $f_gr09 >> TFBSshape/TFBSshape_UniPROBE.meme Converted 208 motifs. Skipped 0 motifs. Converted 178 motifs. Skipped 0 motifs. Converted 5 motifs. Skipped 0 motifs. Converted 1 motifs. Skipped 0 motifs. Converted 1 motifs. Skipped 0 motifs. Converted 89 motifs. Skipped 0 motifs. Processing TFBSshape (JASPAR) ... Creating MEME file with command: url="http://rohslab.cmb.usc.edu/TFBSshape/?tfid=MOTIF_NAME&sourceDB=jaspar"; cat JASPAR/JASPAR_CORE_REDUNDANT_2014.meme | ../TFBSshape/convert_jaspar_urls -url "$url" ../TFBSshape/JASPAR_TFBSshape_mapping.txt < JASPAR/JASPAR_CORE_REDUNDANT_2014.meme > TFBSshape/TFBSshape_JASPAR.meme Converted 360 motifs. Warning: The following JASPAR ids were not found: MA0061.1 Processing TFBSshape (UniPROBE+JASPAR) ... ...Nothing to do for this database. Processing Acanthamoeba_polyphaga_mimivirus ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Acanthamoeba_polyphaga_mimivirus.txt > CIS-BP/Acanthamoeba_polyphaga_mimivirus.meme Converted 1 motifs. Skipped 0 motifs. 0 conversion errors. Processing Acipenser_baerii ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Acipenser_baerii.txt > CIS-BP/Acipenser_baerii.meme Converted 1 motifs. Skipped 0 motifs. 0 conversion errors. Processing Acropora_formosa ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Acropora_formosa.txt > CIS-BP/Acropora_formosa.meme Converted 1 motifs. Skipped 0 motifs. 0 conversion errors. Processing Acropora_millepora ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Acropora_millepora.txt > CIS-BP/Acropora_millepora.meme Converted 1 motifs. Skipped 0 motifs. 0 conversion errors. Processing Acyrtosiphon_pisum ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Acyrtosiphon_pisum.txt > CIS-BP/Acyrtosiphon_pisum.meme Converted 208 motifs. Skipped 0 motifs. 0 conversion errors. Processing Aedes_aegypti ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Aedes_aegypti.txt > CIS-BP/Aedes_aegypti.meme Converted 229 motifs. Skipped 0 motifs. 0 conversion errors. Processing Agaricus_bisporus ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Agaricus_bisporus.txt > CIS-BP/Agaricus_bisporus.meme Converted 12 motifs. Skipped 0 motifs. 0 conversion errors. Processing Ailuropoda_melanoleuca ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Ailuropoda_melanoleuca.txt > CIS-BP/Ailuropoda_melanoleuca.meme Converted 612 motifs. Skipped 0 motifs. 0 conversion errors. Processing Allomyces_macrogynus ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Allomyces_macrogynus.txt > CIS-BP/Allomyces_macrogynus.meme Converted 13 motifs. Skipped 0 motifs. 0 conversion errors. Processing Alternaria_brassicicola ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Alternaria_brassicicola.txt > CIS-BP/Alternaria_brassicicola.meme Converted 45 motifs. Skipped 0 motifs. 0 conversion errors. Processing Amphimedon_queenslandica ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Amphimedon_queenslandica.txt > CIS-BP/Amphimedon_queenslandica.meme Converted 54 motifs. Skipped 0 motifs. 0 conversion errors. Processing Anolis_carolinensis ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Anolis_carolinensis.txt > CIS-BP/Anolis_carolinensis.meme Converted 474 motifs. Skipped 0 motifs. 0 conversion errors. Processing Anopheles_gambiae ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Anopheles_gambiae.txt > CIS-BP/Anopheles_gambiae.meme Converted 231 motifs. Skipped 0 motifs. 0 conversion errors. Processing Antirrhinum_majus ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Antirrhinum_majus.txt > CIS-BP/Antirrhinum_majus.meme Converted 4 motifs. Skipped 0 motifs. 0 conversion errors. Processing Apis_mellifera ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Apis_mellifera.txt > CIS-BP/Apis_mellifera.meme Converted 243 motifs. Skipped 0 motifs. 0 conversion errors. Processing Aplysia_californica ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Aplysia_californica.txt > CIS-BP/Aplysia_californica.meme Converted 1 motifs. Skipped 0 motifs. 0 conversion errors. Processing Arabidopsis_lyrata ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Arabidopsis_lyrata.txt > CIS-BP/Arabidopsis_lyrata.meme Converted 287 motifs. Skipped 0 motifs. 0 conversion errors. Processing Arabidopsis_thaliana ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Arabidopsis_thaliana.txt > CIS-BP/Arabidopsis_thaliana.meme Converted 309 motifs. Skipped 0 motifs. 0 conversion errors. Processing Artemia_franciscana ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Artemia_franciscana.txt > CIS-BP/Artemia_franciscana.meme Converted 1 motifs. Skipped 0 motifs. 0 conversion errors. Processing Arthroderma_benhamiae ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Arthroderma_benhamiae.txt > CIS-BP/Arthroderma_benhamiae.meme Converted 43 motifs. Skipped 0 motifs. 0 conversion errors. Processing Ashbya_gossypii ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Ashbya_gossypii.txt > CIS-BP/Ashbya_gossypii.meme Converted 53 motifs. Skipped 0 motifs. 0 conversion errors. Processing Aspergillus_carbonarius ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Aspergillus_carbonarius.txt > CIS-BP/Aspergillus_carbonarius.meme Converted 54 motifs. Skipped 0 motifs. 0 conversion errors. Processing Aspergillus_clavatus ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Aspergillus_clavatus.txt > CIS-BP/Aspergillus_clavatus.meme Converted 59 motifs. Skipped 0 motifs. 0 conversion errors. Processing Aspergillus_flavus ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Aspergillus_flavus.txt > CIS-BP/Aspergillus_flavus.meme Converted 56 motifs. Skipped 0 motifs. 0 conversion errors. Processing Aspergillus_fumigatus ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Aspergillus_fumigatus.txt > CIS-BP/Aspergillus_fumigatus.meme Converted 53 motifs. Skipped 0 motifs. 0 conversion errors. Processing Aspergillus_nidulans ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Aspergillus_nidulans.txt > CIS-BP/Aspergillus_nidulans.meme Converted 58 motifs. Skipped 0 motifs. 0 conversion errors. Processing Aspergillus_niger ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Aspergillus_niger.txt > CIS-BP/Aspergillus_niger.meme Converted 55 motifs. Skipped 0 motifs. 0 conversion errors. Processing Aspergillus_oryzae ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Aspergillus_oryzae.txt > CIS-BP/Aspergillus_oryzae.meme Converted 55 motifs. Skipped 0 motifs. 0 conversion errors. Processing Aspergillus_terreus ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Aspergillus_terreus.txt > CIS-BP/Aspergillus_terreus.meme Converted 57 motifs. Skipped 0 motifs. 0 conversion errors. Processing Aureococcus_anophagefferens ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Aureococcus_anophagefferens.txt > CIS-BP/Aureococcus_anophagefferens.meme Converted 1 motifs. Skipped 0 motifs. 0 conversion errors. Processing Avian_erythroblastosis_virus ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Avian_erythroblastosis_virus.txt > CIS-BP/Avian_erythroblastosis_virus.meme Converted 1 motifs. Skipped 0 motifs. 0 conversion errors. Processing Avian_musculoaponeurotic_fibrosarco ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Avian_musculoaponeurotic_fibrosarco.txt > CIS-BP/Avian_musculoaponeurotic_fibrosarco.meme Converted 1 motifs. Skipped 0 motifs. 0 conversion errors. Processing Avian_sarcoma_virus_17 ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Avian_sarcoma_virus_17.txt > CIS-BP/Avian_sarcoma_virus_17.meme Converted 1 motifs. Skipped 0 motifs. 0 conversion errors. Processing Babesia_bovis ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Babesia_bovis.txt > CIS-BP/Babesia_bovis.meme Converted 3 motifs. Skipped 0 motifs. 0 conversion errors. Processing Batrachochytrium_dendrobatidis ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Batrachochytrium_dendrobatidis.txt > CIS-BP/Batrachochytrium_dendrobatidis.meme Converted 5 motifs. Skipped 0 motifs. 0 conversion errors. Processing Blastomyces_dermatitidis ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Blastomyces_dermatitidis.txt > CIS-BP/Blastomyces_dermatitidis.meme Converted 55 motifs. Skipped 0 motifs. 0 conversion errors. Processing Bombyx_mori ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Bombyx_mori.txt > CIS-BP/Bombyx_mori.meme Converted 181 motifs. Skipped 0 motifs. 0 conversion errors. Processing Bos_taurus ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Bos_taurus.txt > CIS-BP/Bos_taurus.meme Converted 584 motifs. Skipped 0 motifs. 0 conversion errors. Processing Botrytis_cinerea ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Botrytis_cinerea.txt > CIS-BP/Botrytis_cinerea.meme Converted 52 motifs. Skipped 0 motifs. 0 conversion errors. Processing Brachypodium_distachyon ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Brachypodium_distachyon.txt > CIS-BP/Brachypodium_distachyon.meme Converted 193 motifs. Skipped 0 motifs. 0 conversion errors. Processing Branchiostoma_floridae ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Branchiostoma_floridae.txt > CIS-BP/Branchiostoma_floridae.meme Converted 272 motifs. Skipped 0 motifs. 0 conversion errors. Processing Brassica_napus ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Brassica_napus.txt > CIS-BP/Brassica_napus.meme Converted 3 motifs. Skipped 0 motifs. 0 conversion errors. Processing Brugia_malayi ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Brugia_malayi.txt > CIS-BP/Brugia_malayi.meme Converted 106 motifs. Skipped 0 motifs. 0 conversion errors. Processing Brugia_pahangi ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Brugia_pahangi.txt > CIS-BP/Brugia_pahangi.meme Converted 1 motifs. Skipped 0 motifs. 0 conversion errors. Processing Caenorhabditis_brenneri ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Caenorhabditis_brenneri.txt > CIS-BP/Caenorhabditis_brenneri.meme Converted 180 motifs. Skipped 0 motifs. 0 conversion errors. Processing Caenorhabditis_briggsae ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Caenorhabditis_briggsae.txt > CIS-BP/Caenorhabditis_briggsae.meme Converted 209 motifs. Skipped 0 motifs. 0 conversion errors. Processing Caenorhabditis_elegans ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Caenorhabditis_elegans.txt > CIS-BP/Caenorhabditis_elegans.meme Converted 269 motifs. Skipped 0 motifs. 0 conversion errors. Processing Caenorhabditis_japonica ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Caenorhabditis_japonica.txt > CIS-BP/Caenorhabditis_japonica.meme Converted 171 motifs. Skipped 0 motifs. 0 conversion errors. Processing Caenorhabditis_remanei ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Caenorhabditis_remanei.txt > CIS-BP/Caenorhabditis_remanei.meme Converted 213 motifs. Skipped 0 motifs. 0 conversion errors. Processing Callithrix_jacchus ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Callithrix_jacchus.txt > CIS-BP/Callithrix_jacchus.meme Converted 622 motifs. Skipped 0 motifs. 0 conversion errors. Processing Candida_albicans ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Candida_albicans.txt > CIS-BP/Candida_albicans.meme Converted 33 motifs. Skipped 0 motifs. 0 conversion errors. Processing Candida_dubliniensis ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Candida_dubliniensis.txt > CIS-BP/Candida_dubliniensis.meme Converted 30 motifs. Skipped 0 motifs. 0 conversion errors. Processing Candida_glabrata ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Candida_glabrata.txt > CIS-BP/Candida_glabrata.meme Converted 64 motifs. Skipped 0 motifs. 0 conversion errors. Processing Candida_guilliermondii ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Candida_guilliermondii.txt > CIS-BP/Candida_guilliermondii.meme Converted 24 motifs. Skipped 0 motifs. 0 conversion errors. Processing Candida_lusitaniae ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Candida_lusitaniae.txt > CIS-BP/Candida_lusitaniae.meme Converted 23 motifs. Skipped 0 motifs. 0 conversion errors. Processing Candida_parapsilosis ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Candida_parapsilosis.txt > CIS-BP/Candida_parapsilosis.meme Converted 30 motifs. Skipped 0 motifs. 0 conversion errors. Processing Candida_tropicalis ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Candida_tropicalis.txt > CIS-BP/Candida_tropicalis.meme Converted 27 motifs. Skipped 0 motifs. 0 conversion errors. Processing Canis_familiaris ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Canis_familiaris.txt > CIS-BP/Canis_familiaris.meme Converted 584 motifs. Skipped 0 motifs. 0 conversion errors. Processing Cannabis_sativa ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Cannabis_sativa.txt > CIS-BP/Cannabis_sativa.meme Converted 191 motifs. Skipped 0 motifs. 0 conversion errors. Processing Capitella_teleta ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Capitella_teleta.txt > CIS-BP/Capitella_teleta.meme Converted 249 motifs. Skipped 0 motifs. 0 conversion errors. Processing Capsaspora_owczarzaki ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Capsaspora_owczarzaki.txt > CIS-BP/Capsaspora_owczarzaki.meme Converted 15 motifs. Skipped 0 motifs. 0 conversion errors. Processing Cavia_porcellus ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Cavia_porcellus.txt > CIS-BP/Cavia_porcellus.meme Converted 586 motifs. Skipped 0 motifs. 0 conversion errors. Processing Chaetomium_globosum ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Chaetomium_globosum.txt > CIS-BP/Chaetomium_globosum.meme Converted 66 motifs. Skipped 0 motifs. 0 conversion errors. Processing Chlamydomonas_reinhardtii ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Chlamydomonas_reinhardtii.txt > CIS-BP/Chlamydomonas_reinhardtii.meme Converted 6 motifs. Skipped 0 motifs. 0 conversion errors. Processing Chlorella_NC64A ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Chlorella_NC64A.txt > CIS-BP/Chlorella_NC64A.meme Converted 6 motifs. Skipped 0 motifs. 0 conversion errors. Processing Chlorella_vulgaris ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Chlorella_vulgaris.txt > CIS-BP/Chlorella_vulgaris.meme Converted 7 motifs. Skipped 0 motifs. 0 conversion errors. Processing Choloepus_hoffmanni ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Choloepus_hoffmanni.txt > CIS-BP/Choloepus_hoffmanni.meme Converted 232 motifs. Skipped 0 motifs. 0 conversion errors. Processing Ciona_intestinalis ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Ciona_intestinalis.txt > CIS-BP/Ciona_intestinalis.meme Converted 153 motifs. Skipped 0 motifs. 0 conversion errors. Processing Ciona_savignyi ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Ciona_savignyi.txt > CIS-BP/Ciona_savignyi.meme Converted 152 motifs. Skipped 0 motifs. 0 conversion errors. Processing Coccidioides_immitis ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Coccidioides_immitis.txt > CIS-BP/Coccidioides_immitis.meme Converted 56 motifs. Skipped 0 motifs. 0 conversion errors. Processing Coccidioides_posadasii ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Coccidioides_posadasii.txt > CIS-BP/Coccidioides_posadasii.meme Converted 46 motifs. Skipped 0 motifs. 0 conversion errors. Processing Coccomyxa_C_169 ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Coccomyxa_C_169.txt > CIS-BP/Coccomyxa_C_169.meme Converted 7 motifs. Skipped 0 motifs. 0 conversion errors. Processing Cochliobolus_heterostrophus_C5 ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Cochliobolus_heterostrophus_C5.txt > CIS-BP/Cochliobolus_heterostrophus_C5.meme Converted 55 motifs. Skipped 0 motifs. 0 conversion errors. Processing Colletotrichum_graminicola ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Colletotrichum_graminicola.txt > CIS-BP/Colletotrichum_graminicola.meme Converted 78 motifs. Skipped 0 motifs. 0 conversion errors. Processing Coprinellus_disseminatus ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Coprinellus_disseminatus.txt > CIS-BP/Coprinellus_disseminatus.meme Converted 2 motifs. Skipped 0 motifs. 0 conversion errors. Processing Coprinopsis_cinerea ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Coprinopsis_cinerea.txt > CIS-BP/Coprinopsis_cinerea.meme Converted 17 motifs. Skipped 0 motifs. 0 conversion errors. Processing Coprinopsis_scobicola ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Coprinopsis_scobicola.txt > CIS-BP/Coprinopsis_scobicola.meme Converted 1 motifs. Skipped 0 motifs. 0 conversion errors. Processing Cryphonectria_parasitica ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Cryphonectria_parasitica.txt > CIS-BP/Cryphonectria_parasitica.meme Converted 67 motifs. Skipped 0 motifs. 0 conversion errors. Processing Cryptococcus_neoformans ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Cryptococcus_neoformans.txt > CIS-BP/Cryptococcus_neoformans.meme Converted 13 motifs. Skipped 0 motifs. 0 conversion errors. Processing Cryptosporidium_hominis ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Cryptosporidium_hominis.txt > CIS-BP/Cryptosporidium_hominis.meme Converted 1 motifs. Skipped 0 motifs. 0 conversion errors. Processing Cryptosporidium_muris ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Cryptosporidium_muris.txt > CIS-BP/Cryptosporidium_muris.meme Converted 1 motifs. Skipped 0 motifs. 0 conversion errors. Processing Cryptosporidium_parvum ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Cryptosporidium_parvum.txt > CIS-BP/Cryptosporidium_parvum.meme Converted 1 motifs. Skipped 0 motifs. 0 conversion errors. Processing Cucumis_sativus ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Cucumis_sativus.txt > CIS-BP/Cucumis_sativus.meme Converted 208 motifs. Skipped 0 motifs. 0 conversion errors. Processing Culex_pipiens ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Culex_pipiens.txt > CIS-BP/Culex_pipiens.meme Converted 205 motifs. Skipped 0 motifs. 0 conversion errors. Processing Culex_quinquefasciatus ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Culex_quinquefasciatus.txt > CIS-BP/Culex_quinquefasciatus.meme Converted 205 motifs. Skipped 0 motifs. 0 conversion errors. Processing Cupiennius_salei ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Cupiennius_salei.txt > CIS-BP/Cupiennius_salei.meme Converted 1 motifs. Skipped 0 motifs. 0 conversion errors. Processing Danio_rerio ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Danio_rerio.txt > CIS-BP/Danio_rerio.meme Converted 552 motifs. Skipped 0 motifs. 0 conversion errors. Processing Daphnia_pulex ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Daphnia_pulex.txt > CIS-BP/Daphnia_pulex.meme Converted 228 motifs. Skipped 0 motifs. 0 conversion errors. Processing Dasypus_novemcinctus ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Dasypus_novemcinctus.txt > CIS-BP/Dasypus_novemcinctus.meme Converted 312 motifs. Skipped 0 motifs. 0 conversion errors. Processing Debaryomyces_hansenii ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Debaryomyces_hansenii.txt > CIS-BP/Debaryomyces_hansenii.meme Converted 27 motifs. Skipped 0 motifs. 0 conversion errors. Processing Dictyostelium_discoideum ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Dictyostelium_discoideum.txt > CIS-BP/Dictyostelium_discoideum.meme Converted 41 motifs. Skipped 0 motifs. 0 conversion errors. Processing Dictyostelium_purpureum ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Dictyostelium_purpureum.txt > CIS-BP/Dictyostelium_purpureum.meme Converted 28 motifs. Skipped 0 motifs. 0 conversion errors. Processing Dipodomys_ordii ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Dipodomys_ordii.txt > CIS-BP/Dipodomys_ordii.meme Converted 389 motifs. Skipped 0 motifs. 0 conversion errors. Processing Discocelis_tigrina ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Discocelis_tigrina.txt > CIS-BP/Discocelis_tigrina.meme Converted 1 motifs. Skipped 0 motifs. 0 conversion errors. Processing Drosophila_ananassae ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Drosophila_ananassae.txt > CIS-BP/Drosophila_ananassae.meme Converted 300 motifs. Skipped 0 motifs. 0 conversion errors. Processing Drosophila_erecta ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Drosophila_erecta.txt > CIS-BP/Drosophila_erecta.meme Converted 322 motifs. Skipped 0 motifs. 0 conversion errors. Processing Drosophila_grimshawi ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Drosophila_grimshawi.txt > CIS-BP/Drosophila_grimshawi.meme Converted 299 motifs. Skipped 0 motifs. 0 conversion errors. Processing Drosophila_melanogaster ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Drosophila_melanogaster.txt > CIS-BP/Drosophila_melanogaster.meme Converted 361 motifs. Skipped 0 motifs. 0 conversion errors. Processing Drosophila_mojavensis ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Drosophila_mojavensis.txt > CIS-BP/Drosophila_mojavensis.meme Converted 301 motifs. Skipped 0 motifs. 0 conversion errors. Processing Drosophila_persimilis ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Drosophila_persimilis.txt > CIS-BP/Drosophila_persimilis.meme Converted 289 motifs. Skipped 0 motifs. 0 conversion errors. Processing Drosophila_pseudoobscura ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Drosophila_pseudoobscura.txt > CIS-BP/Drosophila_pseudoobscura.meme Converted 305 motifs. Skipped 0 motifs. 0 conversion errors. Processing Drosophila_sechellia ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Drosophila_sechellia.txt > CIS-BP/Drosophila_sechellia.meme Converted 312 motifs. Skipped 0 motifs. 0 conversion errors. Processing Drosophila_simulans ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Drosophila_simulans.txt > CIS-BP/Drosophila_simulans.meme Converted 284 motifs. Skipped 0 motifs. 0 conversion errors. Processing Drosophila_virilis ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Drosophila_virilis.txt > CIS-BP/Drosophila_virilis.meme Converted 308 motifs. Skipped 0 motifs. 0 conversion errors. Processing Drosophila_willistoni ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Drosophila_willistoni.txt > CIS-BP/Drosophila_willistoni.meme Converted 315 motifs. Skipped 0 motifs. 0 conversion errors. Processing Drosophila_yakuba ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Drosophila_yakuba.txt > CIS-BP/Drosophila_yakuba.meme Converted 321 motifs. Skipped 0 motifs. 0 conversion errors. Processing Echinococcus_granulosus ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Echinococcus_granulosus.txt > CIS-BP/Echinococcus_granulosus.meme Converted 1 motifs. Skipped 0 motifs. 0 conversion errors. Processing Echinops_telfairi ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Echinops_telfairi.txt > CIS-BP/Echinops_telfairi.meme Converted 339 motifs. Skipped 0 motifs. 0 conversion errors. Processing Eleutheria_dichotoma ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Eleutheria_dichotoma.txt > CIS-BP/Eleutheria_dichotoma.meme Converted 2 motifs. Skipped 0 motifs. 0 conversion errors. Processing Emiliania_huxleyi ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Emiliania_huxleyi.txt > CIS-BP/Emiliania_huxleyi.meme Converted 1 motifs. Skipped 0 motifs. 0 conversion errors. Processing Encephalitozoon_cuniculi ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Encephalitozoon_cuniculi.txt > CIS-BP/Encephalitozoon_cuniculi.meme Converted 7 motifs. Skipped 0 motifs. 0 conversion errors. Processing Encephalitozoon_intestinalis ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Encephalitozoon_intestinalis.txt > CIS-BP/Encephalitozoon_intestinalis.meme Converted 7 motifs. Skipped 0 motifs. 0 conversion errors. Processing Enterocytozoon_bieneusi ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Enterocytozoon_bieneusi.txt > CIS-BP/Enterocytozoon_bieneusi.meme Converted 3 motifs. Skipped 0 motifs. 0 conversion errors. Processing Equus_caballus ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Equus_caballus.txt > CIS-BP/Equus_caballus.meme Converted 557 motifs. Skipped 0 motifs. 0 conversion errors. Processing Erinaceus_europaeus ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Erinaceus_europaeus.txt > CIS-BP/Erinaceus_europaeus.meme Converted 319 motifs. Skipped 0 motifs. 0 conversion errors. Processing Felis_catus ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Felis_catus.txt > CIS-BP/Felis_catus.meme Converted 355 motifs. Skipped 0 motifs. 0 conversion errors. Processing Fragilariopsis_cylindrus ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Fragilariopsis_cylindrus.txt > CIS-BP/Fragilariopsis_cylindrus.meme Converted 2 motifs. Skipped 0 motifs. 0 conversion errors. Processing Fusarium_graminearum ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Fusarium_graminearum.txt > CIS-BP/Fusarium_graminearum.meme Converted 76 motifs. Skipped 0 motifs. 0 conversion errors. Processing Fusarium_oxysporum ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Fusarium_oxysporum.txt > CIS-BP/Fusarium_oxysporum.meme Converted 69 motifs. Skipped 0 motifs. 0 conversion errors. Processing Fusarium_verticillioides ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Fusarium_verticillioides.txt > CIS-BP/Fusarium_verticillioides.meme Converted 68 motifs. Skipped 0 motifs. 0 conversion errors. Processing Gallus_gallus ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Gallus_gallus.txt > CIS-BP/Gallus_gallus.meme Converted 414 motifs. Skipped 0 motifs. 0 conversion errors. Processing Gasterosteus_aculeatus ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Gasterosteus_aculeatus.txt > CIS-BP/Gasterosteus_aculeatus.meme Converted 530 motifs. Skipped 0 motifs. 0 conversion errors. Processing Giardia_lamblia ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Giardia_lamblia.txt > CIS-BP/Giardia_lamblia.meme Converted 1 motifs. Skipped 0 motifs. 0 conversion errors. Processing Glycine_max ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Glycine_max.txt > CIS-BP/Glycine_max.meme Converted 237 motifs. Skipped 0 motifs. 0 conversion errors. Processing Gorilla_gorilla ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Gorilla_gorilla.txt > CIS-BP/Gorilla_gorilla.meme Converted 628 motifs. Skipped 0 motifs. 0 conversion errors. Processing Guillardia_theta ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Guillardia_theta.txt > CIS-BP/Guillardia_theta.meme Converted 1 motifs. Skipped 0 motifs. 0 conversion errors. Processing Halocynthia_roretzi ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Halocynthia_roretzi.txt > CIS-BP/Halocynthia_roretzi.meme Converted 1 motifs. Skipped 0 motifs. 0 conversion errors. Processing Helobdella_robusta ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Helobdella_robusta.txt > CIS-BP/Helobdella_robusta.meme Converted 236 motifs. Skipped 0 motifs. 0 conversion errors. Processing Hemiselmis_andersenii ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Hemiselmis_andersenii.txt > CIS-BP/Hemiselmis_andersenii.meme Converted 1 motifs. Skipped 0 motifs. 0 conversion errors. Processing Heterobasidion_annosum ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Heterobasidion_annosum.txt > CIS-BP/Heterobasidion_annosum.meme Converted 11 motifs. Skipped 0 motifs. 0 conversion errors. Processing Heterodontus_francisci ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Heterodontus_francisci.txt > CIS-BP/Heterodontus_francisci.meme Converted 1 motifs. Skipped 0 motifs. 0 conversion errors. Processing Histoplasma_capsulatum ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Histoplasma_capsulatum.txt > CIS-BP/Histoplasma_capsulatum.meme Converted 42 motifs. Skipped 0 motifs. 0 conversion errors. Processing Homo_sapiens ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Homo_sapiens.txt > CIS-BP/Homo_sapiens.meme Converted 733 motifs. Skipped 0 motifs. 0 conversion errors. Processing Hordeum_vulgare ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Hordeum_vulgare.txt > CIS-BP/Hordeum_vulgare.meme Converted 6 motifs. Skipped 0 motifs. 0 conversion errors. Processing Hydra_magnipapillata ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Hydra_magnipapillata.txt > CIS-BP/Hydra_magnipapillata.meme Converted 72 motifs. Skipped 0 motifs. 0 conversion errors. Processing Ipomoea_batatas ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Ipomoea_batatas.txt > CIS-BP/Ipomoea_batatas.meme Converted 1 motifs. Skipped 0 motifs. 0 conversion errors. Processing Ixodes_scapularis ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Ixodes_scapularis.txt > CIS-BP/Ixodes_scapularis.meme Converted 167 motifs. Skipped 0 motifs. 0 conversion errors. Processing Kluyveromyces_delphensis ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Kluyveromyces_delphensis.txt > CIS-BP/Kluyveromyces_delphensis.meme Converted 1 motifs. Skipped 0 motifs. 0 conversion errors. Processing Kluyveromyces_lactis ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Kluyveromyces_lactis.txt > CIS-BP/Kluyveromyces_lactis.meme Converted 48 motifs. Skipped 0 motifs. 0 conversion errors. Processing Kluyveromyces_thermotolerans ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Kluyveromyces_thermotolerans.txt > CIS-BP/Kluyveromyces_thermotolerans.meme Converted 55 motifs. Skipped 0 motifs. 0 conversion errors. Processing Kluyveromyces_waltii ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Kluyveromyces_waltii.txt > CIS-BP/Kluyveromyces_waltii.meme Converted 49 motifs. Skipped 0 motifs. 0 conversion errors. Processing Laccaria_bicolor ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Laccaria_bicolor.txt > CIS-BP/Laccaria_bicolor.meme Converted 15 motifs. Skipped 0 motifs. 0 conversion errors. Processing Lachancea_kluyveri ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Lachancea_kluyveri.txt > CIS-BP/Lachancea_kluyveri.meme Converted 60 motifs. Skipped 0 motifs. 0 conversion errors. Processing Lingula_unguis ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Lingula_unguis.txt > CIS-BP/Lingula_unguis.meme Converted 1 motifs. Skipped 0 motifs. 0 conversion errors. Processing Loa_loa ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Loa_loa.txt > CIS-BP/Loa_loa.meme Converted 118 motifs. Skipped 0 motifs. 0 conversion errors. Processing Lodderomyces_elongisporus ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Lodderomyces_elongisporus.txt > CIS-BP/Lodderomyces_elongisporus.meme Converted 26 motifs. Skipped 0 motifs. 0 conversion errors. Processing Lottia_gigantea ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Lottia_gigantea.txt > CIS-BP/Lottia_gigantea.meme Converted 243 motifs. Skipped 0 motifs. 0 conversion errors. Processing Lotus_japonicus ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Lotus_japonicus.txt > CIS-BP/Lotus_japonicus.meme Converted 181 motifs. Skipped 0 motifs. 0 conversion errors. Processing Loxodonta_africana ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Loxodonta_africana.txt > CIS-BP/Loxodonta_africana.meme Converted 578 motifs. Skipped 0 motifs. 0 conversion errors. Processing Macaca_mulatta ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Macaca_mulatta.txt > CIS-BP/Macaca_mulatta.meme Converted 626 motifs. Skipped 0 motifs. 0 conversion errors. Processing Macropus_eugenii ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Macropus_eugenii.txt > CIS-BP/Macropus_eugenii.meme Converted 406 motifs. Skipped 0 motifs. 0 conversion errors. Processing Magnaporthe_oryzae ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Magnaporthe_oryzae.txt > CIS-BP/Magnaporthe_oryzae.meme Converted 64 motifs. Skipped 0 motifs. 0 conversion errors. Processing Malassezia_globosa ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Malassezia_globosa.txt > CIS-BP/Malassezia_globosa.meme Converted 6 motifs. Skipped 0 motifs. 0 conversion errors. Processing Malus_x_domestica ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Malus_x_domestica.txt > CIS-BP/Malus_x_domestica.meme Converted 219 motifs. Skipped 0 motifs. 0 conversion errors. Processing Manihot_esculenta ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Manihot_esculenta.txt > CIS-BP/Manihot_esculenta.meme Converted 240 motifs. Skipped 0 motifs. 0 conversion errors. Processing Marmota_monax ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Marmota_monax.txt > CIS-BP/Marmota_monax.meme Converted 1 motifs. Skipped 0 motifs. 0 conversion errors. Processing Medicago_truncatula ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Medicago_truncatula.txt > CIS-BP/Medicago_truncatula.meme Converted 184 motifs. Skipped 0 motifs. 0 conversion errors. Processing Melampsora_laricis_populina ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Melampsora_laricis_populina.txt > CIS-BP/Melampsora_laricis_populina.meme Converted 9 motifs. Skipped 0 motifs. 0 conversion errors. Processing Meleagris_gallopavo ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Meleagris_gallopavo.txt > CIS-BP/Meleagris_gallopavo.meme Converted 340 motifs. Skipped 0 motifs. 0 conversion errors. Processing Meloidogyne_incognita ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Meloidogyne_incognita.txt > CIS-BP/Meloidogyne_incognita.meme Converted 67 motifs. Skipped 0 motifs. 0 conversion errors. Processing Microcebus_murinus ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Microcebus_murinus.txt > CIS-BP/Microcebus_murinus.meme Converted 449 motifs. Skipped 0 motifs. 0 conversion errors. Processing Micromonas_pusilla ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Micromonas_pusilla.txt > CIS-BP/Micromonas_pusilla.meme Converted 13 motifs. Skipped 0 motifs. 0 conversion errors. Processing Microsporum_canis ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Microsporum_canis.txt > CIS-BP/Microsporum_canis.meme Converted 54 motifs. Skipped 0 motifs. 0 conversion errors. Processing Microsporum_gypseum ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Microsporum_gypseum.txt > CIS-BP/Microsporum_gypseum.meme Converted 54 motifs. Skipped 0 motifs. 0 conversion errors. Processing Mimulus_guttatus ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Mimulus_guttatus.txt > CIS-BP/Mimulus_guttatus.meme Converted 204 motifs. Skipped 0 motifs. 0 conversion errors. Processing Moniliophthora_perniciosa ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Moniliophthora_perniciosa.txt > CIS-BP/Moniliophthora_perniciosa.meme Converted 2 motifs. Skipped 0 motifs. 0 conversion errors. Processing Monodelphis_domestica ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Monodelphis_domestica.txt > CIS-BP/Monodelphis_domestica.meme Converted 564 motifs. Skipped 0 motifs. 0 conversion errors. Processing Monosiga_brevicollis ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Monosiga_brevicollis.txt > CIS-BP/Monosiga_brevicollis.meme Converted 6 motifs. Skipped 0 motifs. 0 conversion errors. Processing Mucor_circinelloides ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Mucor_circinelloides.txt > CIS-BP/Mucor_circinelloides.meme Converted 24 motifs. Skipped 0 motifs. 0 conversion errors. Processing Mus_musculus ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Mus_musculus.txt > CIS-BP/Mus_musculus.meme Converted 718 motifs. Skipped 0 motifs. 0 conversion errors. Processing Myceliophthora_thermophila ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Myceliophthora_thermophila.txt > CIS-BP/Myceliophthora_thermophila.meme Converted 70 motifs. Skipped 0 motifs. 0 conversion errors. Processing Mycosphaerella_fijiensis ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Mycosphaerella_fijiensis.txt > CIS-BP/Mycosphaerella_fijiensis.meme Converted 44 motifs. Skipped 0 motifs. 0 conversion errors. Processing Mycosphaerella_graminicola ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Mycosphaerella_graminicola.txt > CIS-BP/Mycosphaerella_graminicola.meme Converted 49 motifs. Skipped 0 motifs. 0 conversion errors. Processing Myotis_lucifugus ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Myotis_lucifugus.txt > CIS-BP/Myotis_lucifugus.meme Converted 372 motifs. Skipped 0 motifs. 0 conversion errors. Processing Naegleria_gruberi ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Naegleria_gruberi.txt > CIS-BP/Naegleria_gruberi.meme Converted 5 motifs. Skipped 0 motifs. 0 conversion errors. Processing Nasonia_vitripennis ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Nasonia_vitripennis.txt > CIS-BP/Nasonia_vitripennis.meme Converted 226 motifs. Skipped 0 motifs. 0 conversion errors. Processing Nectria_haematococca ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Nectria_haematococca.txt > CIS-BP/Nectria_haematococca.meme Converted 74 motifs. Skipped 0 motifs. 0 conversion errors. Processing Nematostella_vectensis ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Nematostella_vectensis.txt > CIS-BP/Nematostella_vectensis.meme Converted 203 motifs. Skipped 0 motifs. 0 conversion errors. Processing Neosartorya_fischeri ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Neosartorya_fischeri.txt > CIS-BP/Neosartorya_fischeri.meme Converted 57 motifs. Skipped 0 motifs. 0 conversion errors. Processing Neospora_caninum ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Neospora_caninum.txt > CIS-BP/Neospora_caninum.meme Converted 2 motifs. Skipped 0 motifs. 0 conversion errors. Processing Neurospora_crassa ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Neurospora_crassa.txt > CIS-BP/Neurospora_crassa.meme Converted 130 motifs. Skipped 0 motifs. 0 conversion errors. Processing Neurospora_discreta ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Neurospora_discreta.txt > CIS-BP/Neurospora_discreta.meme Converted 111 motifs. Skipped 0 motifs. 0 conversion errors. Processing Neurospora_tetrasperma ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Neurospora_tetrasperma.txt > CIS-BP/Neurospora_tetrasperma.meme Converted 113 motifs. Skipped 0 motifs. 0 conversion errors. Processing Nicotiana_sp. ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Nicotiana_sp..txt > CIS-BP/Nicotiana_sp..meme Converted 1 motifs. Skipped 0 motifs. 0 conversion errors. Processing Nicotiana_tabacum ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Nicotiana_tabacum.txt > CIS-BP/Nicotiana_tabacum.meme Converted 19 motifs. Skipped 0 motifs. 0 conversion errors. Processing Ochotona_princeps ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Ochotona_princeps.txt > CIS-BP/Ochotona_princeps.meme Converted 423 motifs. Skipped 0 motifs. 0 conversion errors. Processing Oikopleura_dioica ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Oikopleura_dioica.txt > CIS-BP/Oikopleura_dioica.meme Converted 96 motifs. Skipped 0 motifs. 0 conversion errors. Processing Oncorhynchus_tshawytscha ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Oncorhynchus_tshawytscha.txt > CIS-BP/Oncorhynchus_tshawytscha.meme Converted 1 motifs. Skipped 0 motifs. 0 conversion errors. Processing Ornithorhynchus_anatinus ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Ornithorhynchus_anatinus.txt > CIS-BP/Ornithorhynchus_anatinus.meme Converted 366 motifs. Skipped 0 motifs. 0 conversion errors. Processing Oryctolagus_cuniculus ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Oryctolagus_cuniculus.txt > CIS-BP/Oryctolagus_cuniculus.meme Converted 548 motifs. Skipped 0 motifs. 0 conversion errors. Processing Oryza_indica ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Oryza_indica.txt > CIS-BP/Oryza_indica.meme Converted 194 motifs. Skipped 0 motifs. 0 conversion errors. Processing Oryza_sativa ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Oryza_sativa.txt > CIS-BP/Oryza_sativa.meme Converted 203 motifs. Skipped 0 motifs. 0 conversion errors. Processing Oryzias_latipes ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Oryzias_latipes.txt > CIS-BP/Oryzias_latipes.meme Converted 510 motifs. Skipped 0 motifs. 0 conversion errors. Processing Ostreococcus_RCC809 ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Ostreococcus_RCC809.txt > CIS-BP/Ostreococcus_RCC809.meme Converted 17 motifs. Skipped 0 motifs. 0 conversion errors. Processing Ostreococcus_lucimarinus ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Ostreococcus_lucimarinus.txt > CIS-BP/Ostreococcus_lucimarinus.meme Converted 17 motifs. Skipped 0 motifs. 0 conversion errors. Processing Ostreococcus_tauri ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Ostreococcus_tauri.txt > CIS-BP/Ostreococcus_tauri.meme Converted 29 motifs. Skipped 0 motifs. 0 conversion errors. Processing Otolemur_garnettii ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Otolemur_garnettii.txt > CIS-BP/Otolemur_garnettii.meme Converted 358 motifs. Skipped 0 motifs. 0 conversion errors. Processing PBM_CONSTRUCTS ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/PBM_CONSTRUCTS.txt > CIS-BP/PBM_CONSTRUCTS.meme Converted 33 motifs. Skipped 0 motifs. 0 conversion errors. Processing Pan_paniscus ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Pan_paniscus.txt > CIS-BP/Pan_paniscus.meme Converted 1 motifs. Skipped 0 motifs. 0 conversion errors. Processing Pan_troglodytes ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Pan_troglodytes.txt > CIS-BP/Pan_troglodytes.meme Converted 625 motifs. Skipped 0 motifs. 0 conversion errors. Processing Paracoccidioides_brasiliensis ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Paracoccidioides_brasiliensis.txt > CIS-BP/Paracoccidioides_brasiliensis.meme Converted 42 motifs. Skipped 0 motifs. 0 conversion errors. Processing Paramecium_tetraurelia ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Paramecium_tetraurelia.txt > CIS-BP/Paramecium_tetraurelia.meme Converted 6 motifs. Skipped 0 motifs. 0 conversion errors. Processing Pediculus_humanus ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Pediculus_humanus.txt > CIS-BP/Pediculus_humanus.meme Converted 235 motifs. Skipped 0 motifs. 0 conversion errors. Processing Penicillium_chrysogenum ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Penicillium_chrysogenum.txt > CIS-BP/Penicillium_chrysogenum.meme Converted 59 motifs. Skipped 0 motifs. 0 conversion errors. Processing Penicillium_marneffei ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Penicillium_marneffei.txt > CIS-BP/Penicillium_marneffei.meme Converted 59 motifs. Skipped 0 motifs. 0 conversion errors. Processing Petromyzon_marinus ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Petromyzon_marinus.txt > CIS-BP/Petromyzon_marinus.meme Converted 1 motifs. Skipped 0 motifs. 0 conversion errors. Processing Petroselinum_crispum ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Petroselinum_crispum.txt > CIS-BP/Petroselinum_crispum.meme Converted 5 motifs. Skipped 0 motifs. 0 conversion errors. Processing Petunia_x_hybrida ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Petunia_x_hybrida.txt > CIS-BP/Petunia_x_hybrida.meme Converted 8 motifs. Skipped 0 motifs. 0 conversion errors. Processing Phaeodactylum_tricornutum ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Phaeodactylum_tricornutum.txt > CIS-BP/Phaeodactylum_tricornutum.meme Converted 1 motifs. Skipped 0 motifs. 0 conversion errors. Processing Phaeosphaeria_nodorum ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Phaeosphaeria_nodorum.txt > CIS-BP/Phaeosphaeria_nodorum.meme Converted 46 motifs. Skipped 0 motifs. 0 conversion errors. Processing Phanerochaete_chrysosporium ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Phanerochaete_chrysosporium.txt > CIS-BP/Phanerochaete_chrysosporium.meme Converted 8 motifs. Skipped 0 motifs. 0 conversion errors. Processing Phaseolus_vulgaris ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Phaseolus_vulgaris.txt > CIS-BP/Phaseolus_vulgaris.meme Converted 1 motifs. Skipped 0 motifs. 0 conversion errors. Processing Phoenix_dactylifera ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Phoenix_dactylifera.txt > CIS-BP/Phoenix_dactylifera.meme Converted 86 motifs. Skipped 0 motifs. 0 conversion errors. Processing Phycomyces_blakesleeanus ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Phycomyces_blakesleeanus.txt > CIS-BP/Phycomyces_blakesleeanus.meme Converted 22 motifs. Skipped 0 motifs. 0 conversion errors. Processing Physcomitrella_patens ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Physcomitrella_patens.txt > CIS-BP/Physcomitrella_patens.meme Converted 117 motifs. Skipped 0 motifs. 0 conversion errors. Processing Phytophthora_capsici ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Phytophthora_capsici.txt > CIS-BP/Phytophthora_capsici.meme Converted 7 motifs. Skipped 0 motifs. 0 conversion errors. Processing Phytophthora_infestans ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Phytophthora_infestans.txt > CIS-BP/Phytophthora_infestans.meme Converted 6 motifs. Skipped 0 motifs. 0 conversion errors. Processing Phytophthora_ramorum ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Phytophthora_ramorum.txt > CIS-BP/Phytophthora_ramorum.meme Converted 9 motifs. Skipped 0 motifs. 0 conversion errors. Processing Phytophthora_sojae ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Phytophthora_sojae.txt > CIS-BP/Phytophthora_sojae.meme Converted 6 motifs. Skipped 0 motifs. 0 conversion errors. Processing Pichia_angusta ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Pichia_angusta.txt > CIS-BP/Pichia_angusta.meme Converted 1 motifs. Skipped 0 motifs. 0 conversion errors. Processing Pichia_pastoris ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Pichia_pastoris.txt > CIS-BP/Pichia_pastoris.meme Converted 31 motifs. Skipped 0 motifs. 0 conversion errors. Processing Pichia_stipitis ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Pichia_stipitis.txt > CIS-BP/Pichia_stipitis.meme Converted 29 motifs. Skipped 0 motifs. 0 conversion errors. Processing Pisum_sativum ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Pisum_sativum.txt > CIS-BP/Pisum_sativum.meme Converted 4 motifs. Skipped 0 motifs. 0 conversion errors. Processing Plasmodium_berghei ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Plasmodium_berghei.txt > CIS-BP/Plasmodium_berghei.meme Converted 12 motifs. Skipped 0 motifs. 0 conversion errors. Processing Plasmodium_chabaudi ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Plasmodium_chabaudi.txt > CIS-BP/Plasmodium_chabaudi.meme Converted 12 motifs. Skipped 0 motifs. 0 conversion errors. Processing Plasmodium_falciparum ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Plasmodium_falciparum.txt > CIS-BP/Plasmodium_falciparum.meme Converted 19 motifs. Skipped 0 motifs. 0 conversion errors. Processing Plasmodium_knowlesi ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Plasmodium_knowlesi.txt > CIS-BP/Plasmodium_knowlesi.meme Converted 12 motifs. Skipped 0 motifs. 0 conversion errors. Processing Plasmodium_vivax ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Plasmodium_vivax.txt > CIS-BP/Plasmodium_vivax.meme Converted 12 motifs. Skipped 0 motifs. 0 conversion errors. Processing Plasmodium_yoelii ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Plasmodium_yoelii.txt > CIS-BP/Plasmodium_yoelii.meme Converted 11 motifs. Skipped 0 motifs. 0 conversion errors. Processing Pleurobrachia_pileus ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Pleurobrachia_pileus.txt > CIS-BP/Pleurobrachia_pileus.meme Converted 1 motifs. Skipped 0 motifs. 0 conversion errors. Processing Pleurotus_djamor ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Pleurotus_djamor.txt > CIS-BP/Pleurotus_djamor.meme Converted 1 motifs. Skipped 0 motifs. 0 conversion errors. Processing Pleurotus_ostreatus ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Pleurotus_ostreatus.txt > CIS-BP/Pleurotus_ostreatus.meme Converted 13 motifs. Skipped 0 motifs. 0 conversion errors. Processing Pneumocystis_carinii ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Pneumocystis_carinii.txt > CIS-BP/Pneumocystis_carinii.meme Converted 8 motifs. Skipped 0 motifs. 0 conversion errors. Processing Podocoryne_carnea ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Podocoryne_carnea.txt > CIS-BP/Podocoryne_carnea.meme Converted 1 motifs. Skipped 0 motifs. 0 conversion errors. Processing Podospora_anserina ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Podospora_anserina.txt > CIS-BP/Podospora_anserina.meme Converted 83 motifs. Skipped 0 motifs. 0 conversion errors. Processing Polysphondylium_pallidum ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Polysphondylium_pallidum.txt > CIS-BP/Polysphondylium_pallidum.meme Converted 27 motifs. Skipped 0 motifs. 0 conversion errors. Processing Pongo_pygmaeus ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Pongo_pygmaeus.txt > CIS-BP/Pongo_pygmaeus.meme Converted 606 motifs. Skipped 0 motifs. 0 conversion errors. Processing Populus_trichocarpa ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Populus_trichocarpa.txt > CIS-BP/Populus_trichocarpa.meme Converted 233 motifs. Skipped 0 motifs. 0 conversion errors. Processing Postia_placenta ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Postia_placenta.txt > CIS-BP/Postia_placenta.meme Converted 14 motifs. Skipped 0 motifs. 0 conversion errors. Processing Pristionchus_pacificus ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Pristionchus_pacificus.txt > CIS-BP/Pristionchus_pacificus.meme Converted 74 motifs. Skipped 0 motifs. 0 conversion errors. Processing Procavia_capensis ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Procavia_capensis.txt > CIS-BP/Procavia_capensis.meme Converted 408 motifs. Skipped 0 motifs. 0 conversion errors. Processing Prunus_persica ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Prunus_persica.txt > CIS-BP/Prunus_persica.meme Converted 212 motifs. Skipped 0 motifs. 0 conversion errors. Processing Pteropus_vampyrus ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Pteropus_vampyrus.txt > CIS-BP/Pteropus_vampyrus.meme Converted 516 motifs. Skipped 0 motifs. 0 conversion errors. Processing Puccinia_graminis ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Puccinia_graminis.txt > CIS-BP/Puccinia_graminis.meme Converted 10 motifs. Skipped 0 motifs. 0 conversion errors. Processing Puccinia_triticina ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Puccinia_triticina.txt > CIS-BP/Puccinia_triticina.meme Converted 7 motifs. Skipped 0 motifs. 0 conversion errors. Processing Pyrenophora_tritici_repentis ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Pyrenophora_tritici_repentis.txt > CIS-BP/Pyrenophora_tritici_repentis.meme Converted 54 motifs. Skipped 0 motifs. 0 conversion errors. Processing Rattus_norvegicus ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Rattus_norvegicus.txt > CIS-BP/Rattus_norvegicus.meme Converted 620 motifs. Skipped 0 motifs. 0 conversion errors. Processing Rhizopus_oryzae ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Rhizopus_oryzae.txt > CIS-BP/Rhizopus_oryzae.meme Converted 21 motifs. Skipped 0 motifs. 0 conversion errors. Processing Ricinus_communis ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Ricinus_communis.txt > CIS-BP/Ricinus_communis.meme Converted 218 motifs. Skipped 0 motifs. 0 conversion errors. Processing Saccharomyces_bayanus ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Saccharomyces_bayanus.txt > CIS-BP/Saccharomyces_bayanus.meme Converted 129 motifs. Skipped 0 motifs. 0 conversion errors. Processing Saccharomyces_castellii ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Saccharomyces_castellii.txt > CIS-BP/Saccharomyces_castellii.meme Converted 63 motifs. Skipped 0 motifs. 0 conversion errors. Processing Saccharomyces_cerevisiae ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Saccharomyces_cerevisiae.txt > CIS-BP/Saccharomyces_cerevisiae.meme Converted 218 motifs. Skipped 0 motifs. 0 conversion errors. Processing Saccharomyces_kudriavzevii ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Saccharomyces_kudriavzevii.txt > CIS-BP/Saccharomyces_kudriavzevii.meme Converted 91 motifs. Skipped 0 motifs. 0 conversion errors. Processing Saccharomyces_mikatae ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Saccharomyces_mikatae.txt > CIS-BP/Saccharomyces_mikatae.meme Converted 143 motifs. Skipped 0 motifs. 0 conversion errors. Processing Saccharomyces_paradoxus ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Saccharomyces_paradoxus.txt > CIS-BP/Saccharomyces_paradoxus.meme Converted 152 motifs. Skipped 0 motifs. 0 conversion errors. Processing Salpingoeca_rosetta ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Salpingoeca_rosetta.txt > CIS-BP/Salpingoeca_rosetta.meme Converted 9 motifs. Skipped 0 motifs. 0 conversion errors. Processing Saprolegnia_parasitica ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Saprolegnia_parasitica.txt > CIS-BP/Saprolegnia_parasitica.meme Converted 2 motifs. Skipped 0 motifs. 0 conversion errors. Processing Sarsia_sp._Long_Island_Sound ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Sarsia_sp._Long_Island_Sound.txt > CIS-BP/Sarsia_sp._Long_Island_Sound.meme Converted 1 motifs. Skipped 0 motifs. 0 conversion errors. Processing Schistosoma_japonicum ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Schistosoma_japonicum.txt > CIS-BP/Schistosoma_japonicum.meme Converted 93 motifs. Skipped 0 motifs. 0 conversion errors. Processing Schistosoma_mansoni ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Schistosoma_mansoni.txt > CIS-BP/Schistosoma_mansoni.meme Converted 111 motifs. Skipped 0 motifs. 0 conversion errors. Processing Schizophyllum_commune ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Schizophyllum_commune.txt > CIS-BP/Schizophyllum_commune.meme Converted 13 motifs. Skipped 0 motifs. 0 conversion errors. Processing Schizosaccharomyces_cryophilus ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Schizosaccharomyces_cryophilus.txt > CIS-BP/Schizosaccharomyces_cryophilus.meme Converted 12 motifs. Skipped 0 motifs. 0 conversion errors. Processing Schizosaccharomyces_japonicus ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Schizosaccharomyces_japonicus.txt > CIS-BP/Schizosaccharomyces_japonicus.meme Converted 14 motifs. Skipped 0 motifs. 0 conversion errors. Processing Schizosaccharomyces_octosporus ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Schizosaccharomyces_octosporus.txt > CIS-BP/Schizosaccharomyces_octosporus.meme Converted 14 motifs. Skipped 0 motifs. 0 conversion errors. Processing Schizosaccharomyces_pombe ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Schizosaccharomyces_pombe.txt > CIS-BP/Schizosaccharomyces_pombe.meme Converted 15 motifs. Skipped 0 motifs. 0 conversion errors. Processing Sclerotinia_sclerotiorum ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Sclerotinia_sclerotiorum.txt > CIS-BP/Sclerotinia_sclerotiorum.meme Converted 57 motifs. Skipped 0 motifs. 0 conversion errors. Processing Selaginella_moellendorfii ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Selaginella_moellendorfii.txt > CIS-BP/Selaginella_moellendorfii.meme Converted 95 motifs. Skipped 0 motifs. 0 conversion errors. Processing Serpula_lacrymans ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Serpula_lacrymans.txt > CIS-BP/Serpula_lacrymans.meme Converted 10 motifs. Skipped 0 motifs. 0 conversion errors. Processing Solanum_lycopersicum ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Solanum_lycopersicum.txt > CIS-BP/Solanum_lycopersicum.meme Converted 15 motifs. Skipped 0 motifs. 0 conversion errors. Processing Sorex_araneus ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Sorex_araneus.txt > CIS-BP/Sorex_araneus.meme Converted 226 motifs. Skipped 0 motifs. 0 conversion errors. Processing Sorghum_bicolor ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Sorghum_bicolor.txt > CIS-BP/Sorghum_bicolor.meme Converted 210 motifs. Skipped 0 motifs. 0 conversion errors. Processing Spadella_cephaloptera ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Spadella_cephaloptera.txt > CIS-BP/Spadella_cephaloptera.meme Converted 1 motifs. Skipped 0 motifs. 0 conversion errors. Processing Spermophilus_tridecemlineatus ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Spermophilus_tridecemlineatus.txt > CIS-BP/Spermophilus_tridecemlineatus.meme Converted 290 motifs. Skipped 0 motifs. 0 conversion errors. Processing Spizellomyces_punctatus ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Spizellomyces_punctatus.txt > CIS-BP/Spizellomyces_punctatus.meme Converted 15 motifs. Skipped 0 motifs. 0 conversion errors. Processing Sporobolomyces_roseus ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Sporobolomyces_roseus.txt > CIS-BP/Sporobolomyces_roseus.meme Converted 8 motifs. Skipped 0 motifs. 0 conversion errors. Processing Stagonospora_nodorum ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Stagonospora_nodorum.txt > CIS-BP/Stagonospora_nodorum.meme Converted 55 motifs. Skipped 0 motifs. 0 conversion errors. Processing Strongylocentrotus_purpuratus ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Strongylocentrotus_purpuratus.txt > CIS-BP/Strongylocentrotus_purpuratus.meme Converted 221 motifs. Skipped 0 motifs. 0 conversion errors. Processing Sus_scrofa ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Sus_scrofa.txt > CIS-BP/Sus_scrofa.meme Converted 490 motifs. Skipped 0 motifs. 0 conversion errors. Processing Taeniopygia_guttata ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Taeniopygia_guttata.txt > CIS-BP/Taeniopygia_guttata.meme Converted 432 motifs. Skipped 0 motifs. 0 conversion errors. Processing Takifugu_rubripes ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Takifugu_rubripes.txt > CIS-BP/Takifugu_rubripes.meme Converted 547 motifs. Skipped 0 motifs. 0 conversion errors. Processing Tarsius_syrichta ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Tarsius_syrichta.txt > CIS-BP/Tarsius_syrichta.meme Converted 268 motifs. Skipped 0 motifs. 0 conversion errors. Processing Tetrahymena_thermophila ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Tetrahymena_thermophila.txt > CIS-BP/Tetrahymena_thermophila.meme Converted 4 motifs. Skipped 0 motifs. 0 conversion errors. Processing Tetraodon_nigroviridis ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Tetraodon_nigroviridis.txt > CIS-BP/Tetraodon_nigroviridis.meme Converted 538 motifs. Skipped 0 motifs. 0 conversion errors. Processing Thalassiosira_pseudonana ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Thalassiosira_pseudonana.txt > CIS-BP/Thalassiosira_pseudonana.meme Converted 3 motifs. Skipped 0 motifs. 0 conversion errors. Processing Thecamonas_trahens ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Thecamonas_trahens.txt > CIS-BP/Thecamonas_trahens.meme Converted 4 motifs. Skipped 0 motifs. 0 conversion errors. Processing Theileria_annulata ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Theileria_annulata.txt > CIS-BP/Theileria_annulata.meme Converted 4 motifs. Skipped 0 motifs. 0 conversion errors. Processing Theileria_parva ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Theileria_parva.txt > CIS-BP/Theileria_parva.meme Converted 3 motifs. Skipped 0 motifs. 0 conversion errors. Processing Thielavia_terrestris ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Thielavia_terrestris.txt > CIS-BP/Thielavia_terrestris.meme Converted 78 motifs. Skipped 0 motifs. 0 conversion errors. Processing Toxoplasma_gondii ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Toxoplasma_gondii.txt > CIS-BP/Toxoplasma_gondii.meme Converted 2 motifs. Skipped 0 motifs. 0 conversion errors. Processing Tremella_mesenterica ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Tremella_mesenterica.txt > CIS-BP/Tremella_mesenterica.meme Converted 11 motifs. Skipped 0 motifs. 0 conversion errors. Processing Tribolium_castaneum ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Tribolium_castaneum.txt > CIS-BP/Tribolium_castaneum.meme Converted 39 motifs. Skipped 0 motifs. 0 conversion errors. Processing Trichoderma_atroviride ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Trichoderma_atroviride.txt > CIS-BP/Trichoderma_atroviride.meme Converted 69 motifs. Skipped 0 motifs. 0 conversion errors. Processing Trichoderma_reesei ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Trichoderma_reesei.txt > CIS-BP/Trichoderma_reesei.meme Converted 62 motifs. Skipped 0 motifs. 0 conversion errors. Processing Trichoderma_virens ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Trichoderma_virens.txt > CIS-BP/Trichoderma_virens.meme Converted 69 motifs. Skipped 0 motifs. 0 conversion errors. Processing Trichomonas_vaginalis ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Trichomonas_vaginalis.txt > CIS-BP/Trichomonas_vaginalis.meme Converted 13 motifs. Skipped 0 motifs. 0 conversion errors. Processing Trichophyton_equinum ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Trichophyton_equinum.txt > CIS-BP/Trichophyton_equinum.meme Converted 48 motifs. Skipped 0 motifs. 0 conversion errors. Processing Trichophyton_rubrum ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Trichophyton_rubrum.txt > CIS-BP/Trichophyton_rubrum.meme Converted 53 motifs. Skipped 0 motifs. 0 conversion errors. Processing Trichophyton_tonsurans ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Trichophyton_tonsurans.txt > CIS-BP/Trichophyton_tonsurans.meme Converted 48 motifs. Skipped 0 motifs. 0 conversion errors. Processing Trichophyton_verrucosum ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Trichophyton_verrucosum.txt > CIS-BP/Trichophyton_verrucosum.meme Converted 42 motifs. Skipped 0 motifs. 0 conversion errors. Processing Trichoplax_adhaerens ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Trichoplax_adhaerens.txt > CIS-BP/Trichoplax_adhaerens.meme Converted 92 motifs. Skipped 0 motifs. 0 conversion errors. Processing Trionyx_sinensis ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Trionyx_sinensis.txt > CIS-BP/Trionyx_sinensis.meme Converted 1 motifs. Skipped 0 motifs. 0 conversion errors. Processing Tripedalia_cystophora ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Tripedalia_cystophora.txt > CIS-BP/Tripedalia_cystophora.meme Converted 1 motifs. Skipped 0 motifs. 0 conversion errors. Processing Triticum_aestivum ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Triticum_aestivum.txt > CIS-BP/Triticum_aestivum.meme Converted 9 motifs. Skipped 0 motifs. 0 conversion errors. Processing Trypanosoma_vivax ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Trypanosoma_vivax.txt > CIS-BP/Trypanosoma_vivax.meme Converted 1 motifs. Skipped 0 motifs. 0 conversion errors. Processing Tuber_melanosporum ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Tuber_melanosporum.txt > CIS-BP/Tuber_melanosporum.meme Converted 56 motifs. Skipped 0 motifs. 0 conversion errors. Processing Tupaia_belangeri ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Tupaia_belangeri.txt > CIS-BP/Tupaia_belangeri.meme Converted 315 motifs. Skipped 0 motifs. 0 conversion errors. Processing Tursiops_truncatus ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Tursiops_truncatus.txt > CIS-BP/Tursiops_truncatus.meme Converted 526 motifs. Skipped 0 motifs. 0 conversion errors. Processing Uncinocarpus_reesii ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Uncinocarpus_reesii.txt > CIS-BP/Uncinocarpus_reesii.meme Converted 44 motifs. Skipped 0 motifs. 0 conversion errors. Processing Ustilago_maydis ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Ustilago_maydis.txt > CIS-BP/Ustilago_maydis.meme Converted 14 motifs. Skipped 0 motifs. 0 conversion errors. Processing Vanderwaltozyma_polyspora ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Vanderwaltozyma_polyspora.txt > CIS-BP/Vanderwaltozyma_polyspora.meme Converted 53 motifs. Skipped 0 motifs. 0 conversion errors. Processing Verticillium_albo_atrum ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Verticillium_albo_atrum.txt > CIS-BP/Verticillium_albo_atrum.meme Converted 46 motifs. Skipped 0 motifs. 0 conversion errors. Processing Verticillium_dahliae ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Verticillium_dahliae.txt > CIS-BP/Verticillium_dahliae.meme Converted 67 motifs. Skipped 0 motifs. 0 conversion errors. Processing Vicugna_pacos ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Vicugna_pacos.txt > CIS-BP/Vicugna_pacos.meme Converted 216 motifs. Skipped 0 motifs. 0 conversion errors. Processing Vitis_vinifera ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Vitis_vinifera.txt > CIS-BP/Vitis_vinifera.meme Converted 189 motifs. Skipped 0 motifs. 0 conversion errors. Processing Volvox_carteri ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Volvox_carteri.txt > CIS-BP/Volvox_carteri.meme Converted 6 motifs. Skipped 0 motifs. 0 conversion errors. Processing Wuchereria_bancrofti ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Wuchereria_bancrofti.txt > CIS-BP/Wuchereria_bancrofti.meme Converted 105 motifs. Skipped 0 motifs. 0 conversion errors. Processing Xenopus_laevis ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Xenopus_laevis.txt > CIS-BP/Xenopus_laevis.meme Converted 467 motifs. Skipped 0 motifs. 0 conversion errors. Processing Xenopus_tropicalis ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Xenopus_tropicalis.txt > CIS-BP/Xenopus_tropicalis.meme Converted 481 motifs. Skipped 0 motifs. 0 conversion errors. Processing Yarrowia_lipolytica ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Yarrowia_lipolytica.txt > CIS-BP/Yarrowia_lipolytica.meme Converted 33 motifs. Skipped 0 motifs. 0 conversion errors. Processing Zea_mays ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Zea_mays.txt > CIS-BP/Zea_mays.meme Converted 206 motifs. Skipped 0 motifs. 0 conversion errors. Processing Zygosaccharomyces_rouxii ... Creating MEME file with command: transfac2meme -url "http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CIS-BP/1.02/by_species/Zygosaccharomyces_rouxii.txt > CIS-BP/Zygosaccharomyces_rouxii.meme Converted 64 motifs. Skipped 0 motifs. 0 conversion errors. Processing Acyrtosiphon_pisum ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Acyrtosiphon_pisum.txt > CISBP-RNA/Acyrtosiphon_pisum.meme Converted 26 motifs. Skipped 0 motifs. 0 conversion errors. Processing Aedes_aegypti ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Aedes_aegypti.txt > CISBP-RNA/Aedes_aegypti.meme Converted 33 motifs. Skipped 0 motifs. 0 conversion errors. Processing Agaricus_bisporus ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Agaricus_bisporus.txt > CISBP-RNA/Agaricus_bisporus.meme Converted 3 motifs. Skipped 0 motifs. 0 conversion errors. Processing Ailuropoda_melanoleuca ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Ailuropoda_melanoleuca.txt > CISBP-RNA/Ailuropoda_melanoleuca.meme Converted 85 motifs. Skipped 0 motifs. 0 conversion errors. Processing Allomyces_macrogynus ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Allomyces_macrogynus.txt > CISBP-RNA/Allomyces_macrogynus.meme Converted 2 motifs. Skipped 0 motifs. 0 conversion errors. Processing Alternaria_brassicicola ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Alternaria_brassicicola.txt > CISBP-RNA/Alternaria_brassicicola.meme Converted 4 motifs. Skipped 0 motifs. 0 conversion errors. Processing Amphimedon_queenslandica ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Amphimedon_queenslandica.txt > CISBP-RNA/Amphimedon_queenslandica.meme Converted 11 motifs. Skipped 0 motifs. 0 conversion errors. Processing Anolis_carolinensis ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Anolis_carolinensis.txt > CISBP-RNA/Anolis_carolinensis.meme Converted 69 motifs. Skipped 0 motifs. 0 conversion errors. Processing Anopheles_gambiae ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Anopheles_gambiae.txt > CISBP-RNA/Anopheles_gambiae.meme Converted 34 motifs. Skipped 0 motifs. 0 conversion errors. Processing Apis_mellifera ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Apis_mellifera.txt > CISBP-RNA/Apis_mellifera.meme Converted 37 motifs. Skipped 0 motifs. 0 conversion errors. Processing Arabidopsis_lyrata ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Arabidopsis_lyrata.txt > CISBP-RNA/Arabidopsis_lyrata.meme Converted 7 motifs. Skipped 0 motifs. 0 conversion errors. Processing Arabidopsis_thaliana ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Arabidopsis_thaliana.txt > CISBP-RNA/Arabidopsis_thaliana.meme Converted 7 motifs. Skipped 0 motifs. 0 conversion errors. Processing Arthroderma_benhamiae ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Arthroderma_benhamiae.txt > CISBP-RNA/Arthroderma_benhamiae.meme Converted 3 motifs. Skipped 0 motifs. 0 conversion errors. Processing Ashbya_gossypii ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Ashbya_gossypii.txt > CISBP-RNA/Ashbya_gossypii.meme Converted 4 motifs. Skipped 0 motifs. 0 conversion errors. Processing Aspergillus_carbonarius ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Aspergillus_carbonarius.txt > CISBP-RNA/Aspergillus_carbonarius.meme Converted 4 motifs. Skipped 0 motifs. 0 conversion errors. Processing Aspergillus_clavatus ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Aspergillus_clavatus.txt > CISBP-RNA/Aspergillus_clavatus.meme Converted 4 motifs. Skipped 0 motifs. 0 conversion errors. Processing Aspergillus_flavus ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Aspergillus_flavus.txt > CISBP-RNA/Aspergillus_flavus.meme Converted 3 motifs. Skipped 0 motifs. 0 conversion errors. Processing Aspergillus_fumigatus ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Aspergillus_fumigatus.txt > CISBP-RNA/Aspergillus_fumigatus.meme Converted 4 motifs. Skipped 0 motifs. 0 conversion errors. Processing Aspergillus_nidulans ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Aspergillus_nidulans.txt > CISBP-RNA/Aspergillus_nidulans.meme Converted 4 motifs. Skipped 0 motifs. 0 conversion errors. Processing Aspergillus_niger ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Aspergillus_niger.txt > CISBP-RNA/Aspergillus_niger.meme Converted 2 motifs. Skipped 0 motifs. 0 conversion errors. Processing Aspergillus_oryzae ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Aspergillus_oryzae.txt > CISBP-RNA/Aspergillus_oryzae.meme Converted 2 motifs. Skipped 0 motifs. 0 conversion errors. Processing Aspergillus_terreus ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Aspergillus_terreus.txt > CISBP-RNA/Aspergillus_terreus.meme Converted 3 motifs. Skipped 0 motifs. 0 conversion errors. Processing Aureococcus_anophagefferens ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Aureococcus_anophagefferens.txt > CISBP-RNA/Aureococcus_anophagefferens.meme Converted 2 motifs. Skipped 0 motifs. 0 conversion errors. Processing Batrachochytrium_dendrobatidis ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Batrachochytrium_dendrobatidis.txt > CISBP-RNA/Batrachochytrium_dendrobatidis.meme Converted 2 motifs. Skipped 0 motifs. 0 conversion errors. Processing Blastomyces_dermatitidis ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Blastomyces_dermatitidis.txt > CISBP-RNA/Blastomyces_dermatitidis.meme Converted 5 motifs. Skipped 0 motifs. 0 conversion errors. Processing Bombyx_mori ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Bombyx_mori.txt > CISBP-RNA/Bombyx_mori.meme Converted 23 motifs. Skipped 0 motifs. 0 conversion errors. Processing Bos_taurus ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Bos_taurus.txt > CISBP-RNA/Bos_taurus.meme Converted 87 motifs. Skipped 0 motifs. 0 conversion errors. Processing Botrytis_cinerea ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Botrytis_cinerea.txt > CISBP-RNA/Botrytis_cinerea.meme Converted 3 motifs. Skipped 0 motifs. 0 conversion errors. Processing Brachypodium_distachyon ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Brachypodium_distachyon.txt > CISBP-RNA/Brachypodium_distachyon.meme Converted 8 motifs. Skipped 0 motifs. 0 conversion errors. Processing Branchiostoma_floridae ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Branchiostoma_floridae.txt > CISBP-RNA/Branchiostoma_floridae.meme Converted 34 motifs. Skipped 0 motifs. 0 conversion errors. Processing Brugia_malayi ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Brugia_malayi.txt > CISBP-RNA/Brugia_malayi.meme Converted 10 motifs. Skipped 0 motifs. 0 conversion errors. Processing Caenorhabditis_brenneri ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Caenorhabditis_brenneri.txt > CISBP-RNA/Caenorhabditis_brenneri.meme Converted 19 motifs. Skipped 0 motifs. 0 conversion errors. Processing Caenorhabditis_briggsae ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Caenorhabditis_briggsae.txt > CISBP-RNA/Caenorhabditis_briggsae.meme Converted 20 motifs. Skipped 0 motifs. 0 conversion errors. Processing Caenorhabditis_elegans ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Caenorhabditis_elegans.txt > CISBP-RNA/Caenorhabditis_elegans.meme Converted 20 motifs. Skipped 0 motifs. 0 conversion errors. Processing Caenorhabditis_japonica ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Caenorhabditis_japonica.txt > CISBP-RNA/Caenorhabditis_japonica.meme Converted 17 motifs. Skipped 0 motifs. 0 conversion errors. Processing Caenorhabditis_remanei ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Caenorhabditis_remanei.txt > CISBP-RNA/Caenorhabditis_remanei.meme Converted 19 motifs. Skipped 0 motifs. 0 conversion errors. Processing Callithrix_jacchus ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Callithrix_jacchus.txt > CISBP-RNA/Callithrix_jacchus.meme Converted 96 motifs. Skipped 0 motifs. 0 conversion errors. Processing Candida_albicans ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Candida_albicans.txt > CISBP-RNA/Candida_albicans.meme Converted 1 motifs. Skipped 0 motifs. 0 conversion errors. Processing Candida_dubliniensis ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Candida_dubliniensis.txt > CISBP-RNA/Candida_dubliniensis.meme Converted 1 motifs. Skipped 0 motifs. 0 conversion errors. Processing Candida_glabrata ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Candida_glabrata.txt > CISBP-RNA/Candida_glabrata.meme Converted 4 motifs. Skipped 0 motifs. 0 conversion errors. Processing Candida_guilliermondii ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Candida_guilliermondii.txt > CISBP-RNA/Candida_guilliermondii.meme Converted 1 motifs. Skipped 0 motifs. 0 conversion errors. Processing Candida_lusitaniae ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Candida_lusitaniae.txt > CISBP-RNA/Candida_lusitaniae.meme Converted 1 motifs. Skipped 0 motifs. 0 conversion errors. Processing Candida_parapsilosis ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Candida_parapsilosis.txt > CISBP-RNA/Candida_parapsilosis.meme Converted 1 motifs. Skipped 0 motifs. 0 conversion errors. Processing Candida_tropicalis ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Candida_tropicalis.txt > CISBP-RNA/Candida_tropicalis.meme Converted 1 motifs. Skipped 0 motifs. 0 conversion errors. Processing Canis_familiaris ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Canis_familiaris.txt > CISBP-RNA/Canis_familiaris.meme Converted 83 motifs. Skipped 0 motifs. 0 conversion errors. Processing Cannabis_sativa ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Cannabis_sativa.txt > CISBP-RNA/Cannabis_sativa.meme Converted 7 motifs. Skipped 0 motifs. 0 conversion errors. Processing Capitella_teleta ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Capitella_teleta.txt > CISBP-RNA/Capitella_teleta.meme Converted 27 motifs. Skipped 0 motifs. 0 conversion errors. Processing Capsaspora_owczarzaki ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Capsaspora_owczarzaki.txt > CISBP-RNA/Capsaspora_owczarzaki.meme Converted 2 motifs. Skipped 0 motifs. 0 conversion errors. Processing Cavia_porcellus ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Cavia_porcellus.txt > CISBP-RNA/Cavia_porcellus.meme Converted 89 motifs. Skipped 0 motifs. 0 conversion errors. Processing Chaetomium_globosum ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Chaetomium_globosum.txt > CISBP-RNA/Chaetomium_globosum.meme Converted 5 motifs. Skipped 0 motifs. 0 conversion errors. Processing Chlamydomonas_reinhardtii ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Chlamydomonas_reinhardtii.txt > CISBP-RNA/Chlamydomonas_reinhardtii.meme Converted 2 motifs. Skipped 0 motifs. 0 conversion errors. Processing Chlorella_NC64A ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Chlorella_NC64A.txt > CISBP-RNA/Chlorella_NC64A.meme Converted 3 motifs. Skipped 0 motifs. 0 conversion errors. Processing Chlorella_vulgaris ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Chlorella_vulgaris.txt > CISBP-RNA/Chlorella_vulgaris.meme Converted 2 motifs. Skipped 0 motifs. 0 conversion errors. Processing Choloepus_hoffmanni ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Choloepus_hoffmanni.txt > CISBP-RNA/Choloepus_hoffmanni.meme Converted 42 motifs. Skipped 0 motifs. 0 conversion errors. Processing Ciona_intestinalis ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Ciona_intestinalis.txt > CISBP-RNA/Ciona_intestinalis.meme Converted 17 motifs. Skipped 0 motifs. 0 conversion errors. Processing Ciona_savignyi ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Ciona_savignyi.txt > CISBP-RNA/Ciona_savignyi.meme Converted 16 motifs. Skipped 0 motifs. 0 conversion errors. Processing Coccidioides_immitis ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Coccidioides_immitis.txt > CISBP-RNA/Coccidioides_immitis.meme Converted 4 motifs. Skipped 0 motifs. 0 conversion errors. Processing Coccidioides_posadasii ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Coccidioides_posadasii.txt > CISBP-RNA/Coccidioides_posadasii.meme Converted 3 motifs. Skipped 0 motifs. 0 conversion errors. Processing Coccomyxa_C_169 ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Coccomyxa_C_169.txt > CISBP-RNA/Coccomyxa_C_169.meme Converted 2 motifs. Skipped 0 motifs. 0 conversion errors. Processing Cochliobolus_heterostrophus_C5 ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Cochliobolus_heterostrophus_C5.txt > CISBP-RNA/Cochliobolus_heterostrophus_C5.meme Converted 4 motifs. Skipped 0 motifs. 0 conversion errors. Processing Colletotrichum_graminicola ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Colletotrichum_graminicola.txt > CISBP-RNA/Colletotrichum_graminicola.meme Converted 5 motifs. Skipped 0 motifs. 0 conversion errors. Processing Coprinopsis_cinerea ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Coprinopsis_cinerea.txt > CISBP-RNA/Coprinopsis_cinerea.meme Converted 2 motifs. Skipped 0 motifs. 0 conversion errors. Processing Cryphonectria_parasitica ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Cryphonectria_parasitica.txt > CISBP-RNA/Cryphonectria_parasitica.meme Converted 5 motifs. Skipped 0 motifs. 0 conversion errors. Processing Cryptosporidium_hominis ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Cryptosporidium_hominis.txt > CISBP-RNA/Cryptosporidium_hominis.meme Converted 1 motifs. Skipped 0 motifs. 0 conversion errors. Processing Cryptosporidium_parvum ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Cryptosporidium_parvum.txt > CISBP-RNA/Cryptosporidium_parvum.meme Converted 1 motifs. Skipped 0 motifs. 0 conversion errors. Processing Cucumis_sativus ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Cucumis_sativus.txt > CISBP-RNA/Cucumis_sativus.meme Converted 8 motifs. Skipped 0 motifs. 0 conversion errors. Processing Culex_pipiens ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Culex_pipiens.txt > CISBP-RNA/Culex_pipiens.meme Converted 28 motifs. Skipped 0 motifs. 0 conversion errors. Processing Culex_quinquefasciatus ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Culex_quinquefasciatus.txt > CISBP-RNA/Culex_quinquefasciatus.meme Converted 28 motifs. Skipped 0 motifs. 0 conversion errors. Processing Danio_rerio ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Danio_rerio.txt > CISBP-RNA/Danio_rerio.meme Converted 77 motifs. Skipped 0 motifs. 0 conversion errors. Processing Daphnia_pulex ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Daphnia_pulex.txt > CISBP-RNA/Daphnia_pulex.meme Converted 28 motifs. Skipped 0 motifs. 0 conversion errors. Processing Dasypus_novemcinctus ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Dasypus_novemcinctus.txt > CISBP-RNA/Dasypus_novemcinctus.meme Converted 48 motifs. Skipped 0 motifs. 0 conversion errors. Processing Debaryomyces_hansenii ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Debaryomyces_hansenii.txt > CISBP-RNA/Debaryomyces_hansenii.meme Converted 1 motifs. Skipped 0 motifs. 0 conversion errors. Processing Dictyostelium_discoideum ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Dictyostelium_discoideum.txt > CISBP-RNA/Dictyostelium_discoideum.meme Converted 1 motifs. Skipped 0 motifs. 0 conversion errors. Processing Dictyostelium_purpureum ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Dictyostelium_purpureum.txt > CISBP-RNA/Dictyostelium_purpureum.meme Converted 1 motifs. Skipped 0 motifs. 0 conversion errors. Processing Dipodomys_ordii ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Dipodomys_ordii.txt > CISBP-RNA/Dipodomys_ordii.meme Converted 63 motifs. Skipped 0 motifs. 0 conversion errors. Processing Drosophila_ananassae ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Drosophila_ananassae.txt > CISBP-RNA/Drosophila_ananassae.meme Converted 46 motifs. Skipped 0 motifs. 0 conversion errors. Processing Drosophila_erecta ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Drosophila_erecta.txt > CISBP-RNA/Drosophila_erecta.meme Converted 45 motifs. Skipped 0 motifs. 0 conversion errors. Processing Drosophila_grimshawi ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Drosophila_grimshawi.txt > CISBP-RNA/Drosophila_grimshawi.meme Converted 43 motifs. Skipped 0 motifs. 0 conversion errors. Processing Drosophila_melanogaster ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Drosophila_melanogaster.txt > CISBP-RNA/Drosophila_melanogaster.meme Converted 54 motifs. Skipped 0 motifs. 0 conversion errors. Processing Drosophila_mojavensis ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Drosophila_mojavensis.txt > CISBP-RNA/Drosophila_mojavensis.meme Converted 47 motifs. Skipped 0 motifs. 0 conversion errors. Processing Drosophila_persimilis ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Drosophila_persimilis.txt > CISBP-RNA/Drosophila_persimilis.meme Converted 37 motifs. Skipped 0 motifs. 0 conversion errors. Processing Drosophila_pseudoobscura ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Drosophila_pseudoobscura.txt > CISBP-RNA/Drosophila_pseudoobscura.meme Converted 43 motifs. Skipped 0 motifs. 0 conversion errors. Processing Drosophila_sechellia ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Drosophila_sechellia.txt > CISBP-RNA/Drosophila_sechellia.meme Converted 46 motifs. Skipped 0 motifs. 0 conversion errors. Processing Drosophila_simulans ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Drosophila_simulans.txt > CISBP-RNA/Drosophila_simulans.meme Converted 40 motifs. Skipped 0 motifs. 0 conversion errors. Processing Drosophila_virilis ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Drosophila_virilis.txt > CISBP-RNA/Drosophila_virilis.meme Converted 43 motifs. Skipped 0 motifs. 0 conversion errors. Processing Drosophila_willistoni ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Drosophila_willistoni.txt > CISBP-RNA/Drosophila_willistoni.meme Converted 45 motifs. Skipped 0 motifs. 0 conversion errors. Processing Drosophila_yakuba ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Drosophila_yakuba.txt > CISBP-RNA/Drosophila_yakuba.meme Converted 49 motifs. Skipped 0 motifs. 0 conversion errors. Processing Echinops_telfairi ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Echinops_telfairi.txt > CISBP-RNA/Echinops_telfairi.meme Converted 58 motifs. Skipped 0 motifs. 0 conversion errors. Processing Emiliania_huxleyi ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Emiliania_huxleyi.txt > CISBP-RNA/Emiliania_huxleyi.meme Converted 2 motifs. Skipped 0 motifs. 0 conversion errors. Processing Equus_caballus ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Equus_caballus.txt > CISBP-RNA/Equus_caballus.meme Converted 85 motifs. Skipped 0 motifs. 0 conversion errors. Processing Erinaceus_europaeus ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Erinaceus_europaeus.txt > CISBP-RNA/Erinaceus_europaeus.meme Converted 53 motifs. Skipped 0 motifs. 0 conversion errors. Processing Felis_catus ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Felis_catus.txt > CISBP-RNA/Felis_catus.meme Converted 39 motifs. Skipped 0 motifs. 0 conversion errors. Processing Fragilariopsis_cylindrus ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Fragilariopsis_cylindrus.txt > CISBP-RNA/Fragilariopsis_cylindrus.meme Converted 1 motifs. Skipped 0 motifs. 0 conversion errors. Processing Fusarium_graminearum ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Fusarium_graminearum.txt > CISBP-RNA/Fusarium_graminearum.meme Converted 3 motifs. Skipped 0 motifs. 0 conversion errors. Processing Fusarium_oxysporum ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Fusarium_oxysporum.txt > CISBP-RNA/Fusarium_oxysporum.meme Converted 4 motifs. Skipped 0 motifs. 0 conversion errors. Processing Fusarium_verticillioides ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Fusarium_verticillioides.txt > CISBP-RNA/Fusarium_verticillioides.meme Converted 4 motifs. Skipped 0 motifs. 0 conversion errors. Processing Gallus_gallus ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Gallus_gallus.txt > CISBP-RNA/Gallus_gallus.meme Converted 65 motifs. Skipped 0 motifs. 0 conversion errors. Processing Gasterosteus_aculeatus ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Gasterosteus_aculeatus.txt > CISBP-RNA/Gasterosteus_aculeatus.meme Converted 74 motifs. Skipped 0 motifs. 0 conversion errors. Processing Glycine_max ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Glycine_max.txt > CISBP-RNA/Glycine_max.meme Converted 7 motifs. Skipped 0 motifs. 0 conversion errors. Processing Gorilla_gorilla ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Gorilla_gorilla.txt > CISBP-RNA/Gorilla_gorilla.meme Converted 86 motifs. Skipped 0 motifs. 0 conversion errors. Processing Helobdella_robusta ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Helobdella_robusta.txt > CISBP-RNA/Helobdella_robusta.meme Converted 20 motifs. Skipped 0 motifs. 0 conversion errors. Processing Heterobasidion_annosum ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Heterobasidion_annosum.txt > CISBP-RNA/Heterobasidion_annosum.meme Converted 1 motifs. Skipped 0 motifs. 0 conversion errors. Processing Histoplasma_capsulatum ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Histoplasma_capsulatum.txt > CISBP-RNA/Histoplasma_capsulatum.meme Converted 4 motifs. Skipped 0 motifs. 0 conversion errors. Processing Homo_sapiens ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Homo_sapiens.txt > CISBP-RNA/Homo_sapiens.meme Converted 98 motifs. Skipped 0 motifs. 0 conversion errors. Processing Hydra_magnipapillata ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Hydra_magnipapillata.txt > CISBP-RNA/Hydra_magnipapillata.meme Converted 11 motifs. Skipped 0 motifs. 0 conversion errors. Processing Ixodes_scapularis ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Ixodes_scapularis.txt > CISBP-RNA/Ixodes_scapularis.meme Converted 16 motifs. Skipped 0 motifs. 0 conversion errors. Processing Kluyveromyces_lactis ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Kluyveromyces_lactis.txt > CISBP-RNA/Kluyveromyces_lactis.meme Converted 4 motifs. Skipped 0 motifs. 0 conversion errors. Processing Kluyveromyces_thermotolerans ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Kluyveromyces_thermotolerans.txt > CISBP-RNA/Kluyveromyces_thermotolerans.meme Converted 4 motifs. Skipped 0 motifs. 0 conversion errors. Processing Kluyveromyces_waltii ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Kluyveromyces_waltii.txt > CISBP-RNA/Kluyveromyces_waltii.meme Converted 4 motifs. Skipped 0 motifs. 0 conversion errors. Processing Laccaria_bicolor ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Laccaria_bicolor.txt > CISBP-RNA/Laccaria_bicolor.meme Converted 3 motifs. Skipped 0 motifs. 0 conversion errors. Processing Lachancea_kluyveri ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Lachancea_kluyveri.txt > CISBP-RNA/Lachancea_kluyveri.meme Converted 4 motifs. Skipped 0 motifs. 0 conversion errors. Processing Leishmania_braziliensis ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Leishmania_braziliensis.txt > CISBP-RNA/Leishmania_braziliensis.meme Converted 6 motifs. Skipped 0 motifs. 0 conversion errors. Processing Leishmania_infantum ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Leishmania_infantum.txt > CISBP-RNA/Leishmania_infantum.meme Converted 5 motifs. Skipped 0 motifs. 0 conversion errors. Processing Leishmania_major ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Leishmania_major.txt > CISBP-RNA/Leishmania_major.meme Converted 6 motifs. Skipped 0 motifs. 0 conversion errors. Processing Leishmania_mexicana ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Leishmania_mexicana.txt > CISBP-RNA/Leishmania_mexicana.meme Converted 6 motifs. Skipped 0 motifs. 0 conversion errors. Processing Loa_loa ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Loa_loa.txt > CISBP-RNA/Loa_loa.meme Converted 12 motifs. Skipped 0 motifs. 0 conversion errors. Processing Lodderomyces_elongisporus ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Lodderomyces_elongisporus.txt > CISBP-RNA/Lodderomyces_elongisporus.meme Converted 1 motifs. Skipped 0 motifs. 0 conversion errors. Processing Lottia_gigantea ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Lottia_gigantea.txt > CISBP-RNA/Lottia_gigantea.meme Converted 23 motifs. Skipped 0 motifs. 0 conversion errors. Processing Lotus_japonicus ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Lotus_japonicus.txt > CISBP-RNA/Lotus_japonicus.meme Converted 6 motifs. Skipped 0 motifs. 0 conversion errors. Processing Loxodonta_africana ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Loxodonta_africana.txt > CISBP-RNA/Loxodonta_africana.meme Converted 83 motifs. Skipped 0 motifs. 0 conversion errors. Processing Macaca_mulatta ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Macaca_mulatta.txt > CISBP-RNA/Macaca_mulatta.meme Converted 84 motifs. Skipped 0 motifs. 0 conversion errors. Processing Macropus_eugenii ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Macropus_eugenii.txt > CISBP-RNA/Macropus_eugenii.meme Converted 55 motifs. Skipped 0 motifs. 0 conversion errors. Processing Magnaporthe_oryzae ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Magnaporthe_oryzae.txt > CISBP-RNA/Magnaporthe_oryzae.meme Converted 5 motifs. Skipped 0 motifs. 0 conversion errors. Processing Malassezia_globosa ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Malassezia_globosa.txt > CISBP-RNA/Malassezia_globosa.meme Converted 1 motifs. Skipped 0 motifs. 0 conversion errors. Processing Malus_x_domestica ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Malus_x_domestica.txt > CISBP-RNA/Malus_x_domestica.meme Converted 7 motifs. Skipped 0 motifs. 0 conversion errors. Processing Manihot_esculenta ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Manihot_esculenta.txt > CISBP-RNA/Manihot_esculenta.meme Converted 7 motifs. Skipped 0 motifs. 0 conversion errors. Processing Medicago_truncatula ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Medicago_truncatula.txt > CISBP-RNA/Medicago_truncatula.meme Converted 7 motifs. Skipped 0 motifs. 0 conversion errors. Processing Melampsora_laricis_populina ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Melampsora_laricis_populina.txt > CISBP-RNA/Melampsora_laricis_populina.meme Converted 2 motifs. Skipped 0 motifs. 0 conversion errors. Processing Meleagris_gallopavo ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Meleagris_gallopavo.txt > CISBP-RNA/Meleagris_gallopavo.meme Converted 60 motifs. Skipped 0 motifs. 0 conversion errors. Processing Meloidogyne_incognita ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Meloidogyne_incognita.txt > CISBP-RNA/Meloidogyne_incognita.meme Converted 8 motifs. Skipped 0 motifs. 0 conversion errors. Processing Microcebus_murinus ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Microcebus_murinus.txt > CISBP-RNA/Microcebus_murinus.meme Converted 61 motifs. Skipped 0 motifs. 0 conversion errors. Processing Micromonas_pusilla ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Micromonas_pusilla.txt > CISBP-RNA/Micromonas_pusilla.meme Converted 2 motifs. Skipped 0 motifs. 0 conversion errors. Processing Microsporum_canis ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Microsporum_canis.txt > CISBP-RNA/Microsporum_canis.meme Converted 3 motifs. Skipped 0 motifs. 0 conversion errors. Processing Microsporum_gypseum ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Microsporum_gypseum.txt > CISBP-RNA/Microsporum_gypseum.meme Converted 3 motifs. Skipped 0 motifs. 0 conversion errors. Processing Mimulus_guttatus ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Mimulus_guttatus.txt > CISBP-RNA/Mimulus_guttatus.meme Converted 7 motifs. Skipped 0 motifs. 0 conversion errors. Processing Monodelphis_domestica ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Monodelphis_domestica.txt > CISBP-RNA/Monodelphis_domestica.meme Converted 86 motifs. Skipped 0 motifs. 0 conversion errors. Processing Monosiga_brevicollis ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Monosiga_brevicollis.txt > CISBP-RNA/Monosiga_brevicollis.meme Converted 2 motifs. Skipped 0 motifs. 0 conversion errors. Processing Mucor_circinelloides ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Mucor_circinelloides.txt > CISBP-RNA/Mucor_circinelloides.meme Converted 3 motifs. Skipped 0 motifs. 0 conversion errors. Processing Mus_musculus ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Mus_musculus.txt > CISBP-RNA/Mus_musculus.meme Converted 93 motifs. Skipped 0 motifs. 0 conversion errors. Processing Myceliophthora_thermophila ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Myceliophthora_thermophila.txt > CISBP-RNA/Myceliophthora_thermophila.meme Converted 5 motifs. Skipped 0 motifs. 0 conversion errors. Processing Mycosphaerella_fijiensis ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Mycosphaerella_fijiensis.txt > CISBP-RNA/Mycosphaerella_fijiensis.meme Converted 3 motifs. Skipped 0 motifs. 0 conversion errors. Processing Mycosphaerella_graminicola ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Mycosphaerella_graminicola.txt > CISBP-RNA/Mycosphaerella_graminicola.meme Converted 3 motifs. Skipped 0 motifs. 0 conversion errors. Processing Myotis_lucifugus ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Myotis_lucifugus.txt > CISBP-RNA/Myotis_lucifugus.meme Converted 66 motifs. Skipped 0 motifs. 0 conversion errors. Processing Naegleria_gruberi ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Naegleria_gruberi.txt > CISBP-RNA/Naegleria_gruberi.meme Converted 1 motifs. Skipped 0 motifs. 0 conversion errors. Processing Nasonia_vitripennis ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Nasonia_vitripennis.txt > CISBP-RNA/Nasonia_vitripennis.meme Converted 32 motifs. Skipped 0 motifs. 0 conversion errors. Processing Nectria_haematococca ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Nectria_haematococca.txt > CISBP-RNA/Nectria_haematococca.meme Converted 5 motifs. Skipped 0 motifs. 0 conversion errors. Processing Nematostella_vectensis ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Nematostella_vectensis.txt > CISBP-RNA/Nematostella_vectensis.meme Converted 17 motifs. Skipped 0 motifs. 0 conversion errors. Processing Neosartorya_fischeri ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Neosartorya_fischeri.txt > CISBP-RNA/Neosartorya_fischeri.meme Converted 4 motifs. Skipped 0 motifs. 0 conversion errors. Processing Neospora_caninum ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Neospora_caninum.txt > CISBP-RNA/Neospora_caninum.meme Converted 1 motifs. Skipped 0 motifs. 0 conversion errors. Processing Neurospora_crassa ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Neurospora_crassa.txt > CISBP-RNA/Neurospora_crassa.meme Converted 5 motifs. Skipped 0 motifs. 0 conversion errors. Processing Neurospora_discreta ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Neurospora_discreta.txt > CISBP-RNA/Neurospora_discreta.meme Converted 4 motifs. Skipped 0 motifs. 0 conversion errors. Processing Neurospora_tetrasperma ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Neurospora_tetrasperma.txt > CISBP-RNA/Neurospora_tetrasperma.meme Converted 5 motifs. Skipped 0 motifs. 0 conversion errors. Processing Ochotona_princeps ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Ochotona_princeps.txt > CISBP-RNA/Ochotona_princeps.meme Converted 64 motifs. Skipped 0 motifs. 0 conversion errors. Processing Oikopleura_dioica ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Oikopleura_dioica.txt > CISBP-RNA/Oikopleura_dioica.meme Converted 9 motifs. Skipped 0 motifs. 0 conversion errors. Processing Ornithorhynchus_anatinus ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Ornithorhynchus_anatinus.txt > CISBP-RNA/Ornithorhynchus_anatinus.meme Converted 61 motifs. Skipped 0 motifs. 0 conversion errors. Processing Oryctolagus_cuniculus ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Oryctolagus_cuniculus.txt > CISBP-RNA/Oryctolagus_cuniculus.meme Converted 88 motifs. Skipped 0 motifs. 0 conversion errors. Processing Oryza_indica ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Oryza_indica.txt > CISBP-RNA/Oryza_indica.meme Converted 6 motifs. Skipped 0 motifs. 0 conversion errors. Processing Oryza_sativa ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Oryza_sativa.txt > CISBP-RNA/Oryza_sativa.meme Converted 7 motifs. Skipped 0 motifs. 0 conversion errors. Processing Oryzias_latipes ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Oryzias_latipes.txt > CISBP-RNA/Oryzias_latipes.meme Converted 68 motifs. Skipped 0 motifs. 0 conversion errors. Processing Ostreococcus_RCC809 ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Ostreococcus_RCC809.txt > CISBP-RNA/Ostreococcus_RCC809.meme Converted 3 motifs. Skipped 0 motifs. 0 conversion errors. Processing Ostreococcus_lucimarinus ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Ostreococcus_lucimarinus.txt > CISBP-RNA/Ostreococcus_lucimarinus.meme Converted 2 motifs. Skipped 0 motifs. 0 conversion errors. Processing Ostreococcus_tauri ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Ostreococcus_tauri.txt > CISBP-RNA/Ostreococcus_tauri.meme Converted 4 motifs. Skipped 0 motifs. 0 conversion errors. Processing Otolemur_garnettii ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Otolemur_garnettii.txt > CISBP-RNA/Otolemur_garnettii.meme Converted 47 motifs. Skipped 0 motifs. 0 conversion errors. Processing Pan_troglodytes ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Pan_troglodytes.txt > CISBP-RNA/Pan_troglodytes.meme Converted 96 motifs. Skipped 0 motifs. 0 conversion errors. Processing Paracoccidioides_brasiliensis ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Paracoccidioides_brasiliensis.txt > CISBP-RNA/Paracoccidioides_brasiliensis.meme Converted 2 motifs. Skipped 0 motifs. 0 conversion errors. Processing Pediculus_humanus ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Pediculus_humanus.txt > CISBP-RNA/Pediculus_humanus.meme Converted 31 motifs. Skipped 0 motifs. 0 conversion errors. Processing Penicillium_chrysogenum ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Penicillium_chrysogenum.txt > CISBP-RNA/Penicillium_chrysogenum.meme Converted 2 motifs. Skipped 0 motifs. 0 conversion errors. Processing Penicillium_marneffei ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Penicillium_marneffei.txt > CISBP-RNA/Penicillium_marneffei.meme Converted 4 motifs. Skipped 0 motifs. 0 conversion errors. Processing Phaeodactylum_tricornutum ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Phaeodactylum_tricornutum.txt > CISBP-RNA/Phaeodactylum_tricornutum.meme Converted 1 motifs. Skipped 0 motifs. 0 conversion errors. Processing Phaeosphaeria_nodorum ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Phaeosphaeria_nodorum.txt > CISBP-RNA/Phaeosphaeria_nodorum.meme Converted 3 motifs. Skipped 0 motifs. 0 conversion errors. Processing Phanerochaete_chrysosporium ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Phanerochaete_chrysosporium.txt > CISBP-RNA/Phanerochaete_chrysosporium.meme Converted 3 motifs. Skipped 0 motifs. 0 conversion errors. Processing Phoenix_dactylifera ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Phoenix_dactylifera.txt > CISBP-RNA/Phoenix_dactylifera.meme Converted 3 motifs. Skipped 0 motifs. 0 conversion errors. Processing Phycomyces_blakesleeanus ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Phycomyces_blakesleeanus.txt > CISBP-RNA/Phycomyces_blakesleeanus.meme Converted 4 motifs. Skipped 0 motifs. 0 conversion errors. Processing Physcomitrella_patens ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Physcomitrella_patens.txt > CISBP-RNA/Physcomitrella_patens.meme Converted 7 motifs. Skipped 0 motifs. 0 conversion errors. Processing Phytophthora_capsici ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Phytophthora_capsici.txt > CISBP-RNA/Phytophthora_capsici.meme Converted 2 motifs. Skipped 0 motifs. 0 conversion errors. Processing Phytophthora_infestans ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Phytophthora_infestans.txt > CISBP-RNA/Phytophthora_infestans.meme Converted 2 motifs. Skipped 0 motifs. 0 conversion errors. Processing Phytophthora_ramorum ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Phytophthora_ramorum.txt > CISBP-RNA/Phytophthora_ramorum.meme Converted 2 motifs. Skipped 0 motifs. 0 conversion errors. Processing Phytophthora_sojae ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Phytophthora_sojae.txt > CISBP-RNA/Phytophthora_sojae.meme Converted 1 motifs. Skipped 0 motifs. 0 conversion errors. Processing Pichia_pastoris ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Pichia_pastoris.txt > CISBP-RNA/Pichia_pastoris.meme Converted 1 motifs. Skipped 0 motifs. 0 conversion errors. Processing Pichia_stipitis ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Pichia_stipitis.txt > CISBP-RNA/Pichia_stipitis.meme Converted 1 motifs. Skipped 0 motifs. 0 conversion errors. Processing Plasmodium_berghei ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Plasmodium_berghei.txt > CISBP-RNA/Plasmodium_berghei.meme Converted 7 motifs. Skipped 0 motifs. 0 conversion errors. Processing Plasmodium_chabaudi ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Plasmodium_chabaudi.txt > CISBP-RNA/Plasmodium_chabaudi.meme Converted 8 motifs. Skipped 0 motifs. 0 conversion errors. Processing Plasmodium_falciparum ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Plasmodium_falciparum.txt > CISBP-RNA/Plasmodium_falciparum.meme Converted 8 motifs. Skipped 0 motifs. 0 conversion errors. Processing Plasmodium_knowlesi ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Plasmodium_knowlesi.txt > CISBP-RNA/Plasmodium_knowlesi.meme Converted 7 motifs. Skipped 0 motifs. 0 conversion errors. Processing Plasmodium_vivax ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Plasmodium_vivax.txt > CISBP-RNA/Plasmodium_vivax.meme Converted 7 motifs. Skipped 0 motifs. 0 conversion errors. Processing Plasmodium_yoelii ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Plasmodium_yoelii.txt > CISBP-RNA/Plasmodium_yoelii.meme Converted 5 motifs. Skipped 0 motifs. 0 conversion errors. Processing Pleurotus_ostreatus ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Pleurotus_ostreatus.txt > CISBP-RNA/Pleurotus_ostreatus.meme Converted 3 motifs. Skipped 0 motifs. 0 conversion errors. Processing Pneumocystis_carinii ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Pneumocystis_carinii.txt > CISBP-RNA/Pneumocystis_carinii.meme Converted 3 motifs. Skipped 0 motifs. 0 conversion errors. Processing Podospora_anserina ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Podospora_anserina.txt > CISBP-RNA/Podospora_anserina.meme Converted 5 motifs. Skipped 0 motifs. 0 conversion errors. Processing Polysphondylium_pallidum ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Polysphondylium_pallidum.txt > CISBP-RNA/Polysphondylium_pallidum.meme Converted 2 motifs. Skipped 0 motifs. 0 conversion errors. Processing Pongo_pygmaeus ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Pongo_pygmaeus.txt > CISBP-RNA/Pongo_pygmaeus.meme Converted 81 motifs. Skipped 0 motifs. 0 conversion errors. Processing Populus_trichocarpa ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Populus_trichocarpa.txt > CISBP-RNA/Populus_trichocarpa.meme Converted 8 motifs. Skipped 0 motifs. 0 conversion errors. Processing Postia_placenta ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Postia_placenta.txt > CISBP-RNA/Postia_placenta.meme Converted 3 motifs. Skipped 0 motifs. 0 conversion errors. Processing Pristionchus_pacificus ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Pristionchus_pacificus.txt > CISBP-RNA/Pristionchus_pacificus.meme Converted 6 motifs. Skipped 0 motifs. 0 conversion errors. Processing Procavia_capensis ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Procavia_capensis.txt > CISBP-RNA/Procavia_capensis.meme Converted 57 motifs. Skipped 0 motifs. 0 conversion errors. Processing Prunus_persica ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Prunus_persica.txt > CISBP-RNA/Prunus_persica.meme Converted 7 motifs. Skipped 0 motifs. 0 conversion errors. Processing Pteropus_vampyrus ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Pteropus_vampyrus.txt > CISBP-RNA/Pteropus_vampyrus.meme Converted 80 motifs. Skipped 0 motifs. 0 conversion errors. Processing Pyrenophora_tritici_repentis ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Pyrenophora_tritici_repentis.txt > CISBP-RNA/Pyrenophora_tritici_repentis.meme Converted 4 motifs. Skipped 0 motifs. 0 conversion errors. Processing RNAcompete_CONSTRUCTS ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/RNAcompete_CONSTRUCTS.txt > CISBP-RNA/RNAcompete_CONSTRUCTS.meme Converted 13 motifs. Skipped 0 motifs. 0 conversion errors. Processing Rattus_norvegicus ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Rattus_norvegicus.txt > CISBP-RNA/Rattus_norvegicus.meme Converted 91 motifs. Skipped 0 motifs. 0 conversion errors. Processing Rhizopus_oryzae ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Rhizopus_oryzae.txt > CISBP-RNA/Rhizopus_oryzae.meme Converted 3 motifs. Skipped 0 motifs. 0 conversion errors. Processing Ricinus_communis ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Ricinus_communis.txt > CISBP-RNA/Ricinus_communis.meme Converted 7 motifs. Skipped 0 motifs. 0 conversion errors. Processing Saccharomyces_bayanus ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Saccharomyces_bayanus.txt > CISBP-RNA/Saccharomyces_bayanus.meme Converted 4 motifs. Skipped 0 motifs. 0 conversion errors. Processing Saccharomyces_castellii ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Saccharomyces_castellii.txt > CISBP-RNA/Saccharomyces_castellii.meme Converted 3 motifs. Skipped 0 motifs. 0 conversion errors. Processing Saccharomyces_cerevisiae ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Saccharomyces_cerevisiae.txt > CISBP-RNA/Saccharomyces_cerevisiae.meme Converted 4 motifs. Skipped 0 motifs. 0 conversion errors. Processing Saccharomyces_kudriavzevii ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Saccharomyces_kudriavzevii.txt > CISBP-RNA/Saccharomyces_kudriavzevii.meme Converted 2 motifs. Skipped 0 motifs. 0 conversion errors. Processing Saccharomyces_mikatae ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Saccharomyces_mikatae.txt > CISBP-RNA/Saccharomyces_mikatae.meme Converted 4 motifs. Skipped 0 motifs. 0 conversion errors. Processing Saccharomyces_paradoxus ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Saccharomyces_paradoxus.txt > CISBP-RNA/Saccharomyces_paradoxus.meme Converted 4 motifs. Skipped 0 motifs. 0 conversion errors. Processing Salpingoeca_rosetta ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Salpingoeca_rosetta.txt > CISBP-RNA/Salpingoeca_rosetta.meme Converted 3 motifs. Skipped 0 motifs. 0 conversion errors. Processing Saprolegnia_parasitica ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Saprolegnia_parasitica.txt > CISBP-RNA/Saprolegnia_parasitica.meme Converted 1 motifs. Skipped 0 motifs. 0 conversion errors. Processing Schistosoma_japonicum ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Schistosoma_japonicum.txt > CISBP-RNA/Schistosoma_japonicum.meme Converted 6 motifs. Skipped 0 motifs. 0 conversion errors. Processing Schistosoma_mansoni ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Schistosoma_mansoni.txt > CISBP-RNA/Schistosoma_mansoni.meme Converted 11 motifs. Skipped 0 motifs. 0 conversion errors. Processing Schizophyllum_commune ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Schizophyllum_commune.txt > CISBP-RNA/Schizophyllum_commune.meme Converted 4 motifs. Skipped 0 motifs. 0 conversion errors. Processing Schizosaccharomyces_cryophilus ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Schizosaccharomyces_cryophilus.txt > CISBP-RNA/Schizosaccharomyces_cryophilus.meme Converted 1 motifs. Skipped 0 motifs. 0 conversion errors. Processing Schizosaccharomyces_japonicus ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Schizosaccharomyces_japonicus.txt > CISBP-RNA/Schizosaccharomyces_japonicus.meme Converted 1 motifs. Skipped 0 motifs. 0 conversion errors. Processing Schizosaccharomyces_octosporus ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Schizosaccharomyces_octosporus.txt > CISBP-RNA/Schizosaccharomyces_octosporus.meme Converted 2 motifs. Skipped 0 motifs. 0 conversion errors. Processing Schizosaccharomyces_pombe ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Schizosaccharomyces_pombe.txt > CISBP-RNA/Schizosaccharomyces_pombe.meme Converted 1 motifs. Skipped 0 motifs. 0 conversion errors. Processing Sclerotinia_sclerotiorum ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Sclerotinia_sclerotiorum.txt > CISBP-RNA/Sclerotinia_sclerotiorum.meme Converted 3 motifs. Skipped 0 motifs. 0 conversion errors. Processing Selaginella_moellendorfii ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Selaginella_moellendorfii.txt > CISBP-RNA/Selaginella_moellendorfii.meme Converted 6 motifs. Skipped 0 motifs. 0 conversion errors. Processing Serpula_lacrymans ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Serpula_lacrymans.txt > CISBP-RNA/Serpula_lacrymans.meme Converted 3 motifs. Skipped 0 motifs. 0 conversion errors. Processing Sorex_araneus ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Sorex_araneus.txt > CISBP-RNA/Sorex_araneus.meme Converted 49 motifs. Skipped 0 motifs. 0 conversion errors. Processing Sorghum_bicolor ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Sorghum_bicolor.txt > CISBP-RNA/Sorghum_bicolor.meme Converted 7 motifs. Skipped 0 motifs. 0 conversion errors. Processing Spermophilus_tridecemlineatus ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Spermophilus_tridecemlineatus.txt > CISBP-RNA/Spermophilus_tridecemlineatus.meme Converted 44 motifs. Skipped 0 motifs. 0 conversion errors. Processing Spizellomyces_punctatus ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Spizellomyces_punctatus.txt > CISBP-RNA/Spizellomyces_punctatus.meme Converted 4 motifs. Skipped 0 motifs. 0 conversion errors. Processing Sporobolomyces_roseus ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Sporobolomyces_roseus.txt > CISBP-RNA/Sporobolomyces_roseus.meme Converted 1 motifs. Skipped 0 motifs. 0 conversion errors. Processing Stagonospora_nodorum ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Stagonospora_nodorum.txt > CISBP-RNA/Stagonospora_nodorum.meme Converted 4 motifs. Skipped 0 motifs. 0 conversion errors. Processing Strongylocentrotus_purpuratus ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Strongylocentrotus_purpuratus.txt > CISBP-RNA/Strongylocentrotus_purpuratus.meme Converted 20 motifs. Skipped 0 motifs. 0 conversion errors. Processing Sus_scrofa ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Sus_scrofa.txt > CISBP-RNA/Sus_scrofa.meme Converted 64 motifs. Skipped 0 motifs. 0 conversion errors. Processing Taeniopygia_guttata ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Taeniopygia_guttata.txt > CISBP-RNA/Taeniopygia_guttata.meme Converted 70 motifs. Skipped 0 motifs. 0 conversion errors. Processing Takifugu_rubripes ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Takifugu_rubripes.txt > CISBP-RNA/Takifugu_rubripes.meme Converted 69 motifs. Skipped 0 motifs. 0 conversion errors. Processing Tarsius_syrichta ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Tarsius_syrichta.txt > CISBP-RNA/Tarsius_syrichta.meme Converted 53 motifs. Skipped 0 motifs. 0 conversion errors. Processing Tetraodon_nigroviridis ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Tetraodon_nigroviridis.txt > CISBP-RNA/Tetraodon_nigroviridis.meme Converted 72 motifs. Skipped 0 motifs. 0 conversion errors. Processing Thalassiosira_pseudonana ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Thalassiosira_pseudonana.txt > CISBP-RNA/Thalassiosira_pseudonana.meme Converted 2 motifs. Skipped 0 motifs. 0 conversion errors. Processing Thecamonas_trahens ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Thecamonas_trahens.txt > CISBP-RNA/Thecamonas_trahens.meme Converted 1 motifs. Skipped 0 motifs. 0 conversion errors. Processing Thielavia_terrestris ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Thielavia_terrestris.txt > CISBP-RNA/Thielavia_terrestris.meme Converted 5 motifs. Skipped 0 motifs. 0 conversion errors. Processing Toxoplasma_gondii ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Toxoplasma_gondii.txt > CISBP-RNA/Toxoplasma_gondii.meme Converted 1 motifs. Skipped 0 motifs. 0 conversion errors. Processing Tremella_mesenterica ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Tremella_mesenterica.txt > CISBP-RNA/Tremella_mesenterica.meme Converted 2 motifs. Skipped 0 motifs. 0 conversion errors. Processing Tribolium_castaneum ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Tribolium_castaneum.txt > CISBP-RNA/Tribolium_castaneum.meme Converted 3 motifs. Skipped 0 motifs. 0 conversion errors. Processing Trichoderma_atroviride ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Trichoderma_atroviride.txt > CISBP-RNA/Trichoderma_atroviride.meme Converted 4 motifs. Skipped 0 motifs. 0 conversion errors. Processing Trichoderma_reesei ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Trichoderma_reesei.txt > CISBP-RNA/Trichoderma_reesei.meme Converted 5 motifs. Skipped 0 motifs. 0 conversion errors. Processing Trichoderma_virens ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Trichoderma_virens.txt > CISBP-RNA/Trichoderma_virens.meme Converted 5 motifs. Skipped 0 motifs. 0 conversion errors. Processing Trichomonas_vaginalis ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Trichomonas_vaginalis.txt > CISBP-RNA/Trichomonas_vaginalis.meme Converted 5 motifs. Skipped 0 motifs. 0 conversion errors. Processing Trichophyton_equinum ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Trichophyton_equinum.txt > CISBP-RNA/Trichophyton_equinum.meme Converted 3 motifs. Skipped 0 motifs. 0 conversion errors. Processing Trichophyton_rubrum ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Trichophyton_rubrum.txt > CISBP-RNA/Trichophyton_rubrum.meme Converted 3 motifs. Skipped 0 motifs. 0 conversion errors. Processing Trichophyton_tonsurans ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Trichophyton_tonsurans.txt > CISBP-RNA/Trichophyton_tonsurans.meme Converted 4 motifs. Skipped 0 motifs. 0 conversion errors. Processing Trichophyton_verrucosum ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Trichophyton_verrucosum.txt > CISBP-RNA/Trichophyton_verrucosum.meme Converted 3 motifs. Skipped 0 motifs. 0 conversion errors. Processing Trichoplax_adhaerens ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Trichoplax_adhaerens.txt > CISBP-RNA/Trichoplax_adhaerens.meme Converted 12 motifs. Skipped 0 motifs. 0 conversion errors. Processing Trypanosoma_brucei ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Trypanosoma_brucei.txt > CISBP-RNA/Trypanosoma_brucei.meme Converted 11 motifs. Skipped 0 motifs. 0 conversion errors. Processing Trypanosoma_congolense ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Trypanosoma_congolense.txt > CISBP-RNA/Trypanosoma_congolense.meme Converted 8 motifs. Skipped 0 motifs. 0 conversion errors. Processing Trypanosoma_cruzi ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Trypanosoma_cruzi.txt > CISBP-RNA/Trypanosoma_cruzi.meme Converted 5 motifs. Skipped 0 motifs. 0 conversion errors. Processing Trypanosoma_vivax ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Trypanosoma_vivax.txt > CISBP-RNA/Trypanosoma_vivax.meme Converted 5 motifs. Skipped 0 motifs. 0 conversion errors. Processing Tuber_melanosporum ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Tuber_melanosporum.txt > CISBP-RNA/Tuber_melanosporum.meme Converted 3 motifs. Skipped 0 motifs. 0 conversion errors. Processing Tupaia_belangeri ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Tupaia_belangeri.txt > CISBP-RNA/Tupaia_belangeri.meme Converted 51 motifs. Skipped 0 motifs. 0 conversion errors. Processing Tursiops_truncatus ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Tursiops_truncatus.txt > CISBP-RNA/Tursiops_truncatus.meme Converted 79 motifs. Skipped 0 motifs. 0 conversion errors. Processing Uncinocarpus_reesii ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Uncinocarpus_reesii.txt > CISBP-RNA/Uncinocarpus_reesii.meme Converted 4 motifs. Skipped 0 motifs. 0 conversion errors. Processing Ustilago_maydis ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Ustilago_maydis.txt > CISBP-RNA/Ustilago_maydis.meme Converted 2 motifs. Skipped 0 motifs. 0 conversion errors. Processing Vanderwaltozyma_polyspora ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Vanderwaltozyma_polyspora.txt > CISBP-RNA/Vanderwaltozyma_polyspora.meme Converted 4 motifs. Skipped 0 motifs. 0 conversion errors. Processing Verticillium_albo_atrum ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Verticillium_albo_atrum.txt > CISBP-RNA/Verticillium_albo_atrum.meme Converted 2 motifs. Skipped 0 motifs. 0 conversion errors. Processing Verticillium_dahliae ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Verticillium_dahliae.txt > CISBP-RNA/Verticillium_dahliae.meme Converted 4 motifs. Skipped 0 motifs. 0 conversion errors. Processing Vicugna_pacos ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Vicugna_pacos.txt > CISBP-RNA/Vicugna_pacos.meme Converted 54 motifs. Skipped 0 motifs. 0 conversion errors. Processing Vitis_vinifera ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Vitis_vinifera.txt > CISBP-RNA/Vitis_vinifera.meme Converted 7 motifs. Skipped 0 motifs. 0 conversion errors. Processing Volvox_carteri ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Volvox_carteri.txt > CISBP-RNA/Volvox_carteri.meme Converted 1 motifs. Skipped 0 motifs. 0 conversion errors. Processing Wuchereria_bancrofti ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Wuchereria_bancrofti.txt > CISBP-RNA/Wuchereria_bancrofti.meme Converted 11 motifs. Skipped 0 motifs. 0 conversion errors. Processing Xenopus_laevis ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Xenopus_laevis.txt > CISBP-RNA/Xenopus_laevis.meme Converted 68 motifs. Skipped 0 motifs. 0 conversion errors. Processing Xenopus_tropicalis ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Xenopus_tropicalis.txt > CISBP-RNA/Xenopus_tropicalis.meme Converted 68 motifs. Skipped 0 motifs. 0 conversion errors. Processing Yarrowia_lipolytica ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Yarrowia_lipolytica.txt > CISBP-RNA/Yarrowia_lipolytica.meme Converted 1 motifs. Skipped 0 motifs. 0 conversion errors. Processing Zea_mays ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Zea_mays.txt > CISBP-RNA/Zea_mays.meme Converted 7 motifs. Skipped 0 motifs. 0 conversion errors. Processing Zygosaccharomyces_rouxii ... Creating MEME file with command: transfac2meme -rna -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Zygosaccharomyces_rouxii.txt > CISBP-RNA/Zygosaccharomyces_rouxii.meme Converted 4 motifs. Skipped 0 motifs. 0 conversion errors. Processing Acyrtosiphon_pisum (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Acyrtosiphon_pisum.txt > CISBP-RNA/Acyrtosiphon_pisum.dna_encoded.meme Converted 26 motifs. Skipped 0 motifs. 0 conversion errors. Processing Aedes_aegypti (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Aedes_aegypti.txt > CISBP-RNA/Aedes_aegypti.dna_encoded.meme Converted 33 motifs. Skipped 0 motifs. 0 conversion errors. Processing Agaricus_bisporus (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Agaricus_bisporus.txt > CISBP-RNA/Agaricus_bisporus.dna_encoded.meme Converted 3 motifs. Skipped 0 motifs. 0 conversion errors. Processing Ailuropoda_melanoleuca (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Ailuropoda_melanoleuca.txt > CISBP-RNA/Ailuropoda_melanoleuca.dna_encoded.meme Converted 85 motifs. Skipped 0 motifs. 0 conversion errors. Processing Allomyces_macrogynus (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Allomyces_macrogynus.txt > CISBP-RNA/Allomyces_macrogynus.dna_encoded.meme Converted 2 motifs. Skipped 0 motifs. 0 conversion errors. Processing Alternaria_brassicicola (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Alternaria_brassicicola.txt > CISBP-RNA/Alternaria_brassicicola.dna_encoded.meme Converted 4 motifs. Skipped 0 motifs. 0 conversion errors. Processing Amphimedon_queenslandica (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Amphimedon_queenslandica.txt > CISBP-RNA/Amphimedon_queenslandica.dna_encoded.meme Converted 11 motifs. Skipped 0 motifs. 0 conversion errors. Processing Anolis_carolinensis (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Anolis_carolinensis.txt > CISBP-RNA/Anolis_carolinensis.dna_encoded.meme Converted 69 motifs. Skipped 0 motifs. 0 conversion errors. Processing Anopheles_gambiae (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Anopheles_gambiae.txt > CISBP-RNA/Anopheles_gambiae.dna_encoded.meme Converted 34 motifs. Skipped 0 motifs. 0 conversion errors. Processing Apis_mellifera (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Apis_mellifera.txt > CISBP-RNA/Apis_mellifera.dna_encoded.meme Converted 37 motifs. Skipped 0 motifs. 0 conversion errors. Processing Arabidopsis_lyrata (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Arabidopsis_lyrata.txt > CISBP-RNA/Arabidopsis_lyrata.dna_encoded.meme Converted 7 motifs. Skipped 0 motifs. 0 conversion errors. Processing Arabidopsis_thaliana (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Arabidopsis_thaliana.txt > CISBP-RNA/Arabidopsis_thaliana.dna_encoded.meme Converted 7 motifs. Skipped 0 motifs. 0 conversion errors. Processing Arthroderma_benhamiae (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Arthroderma_benhamiae.txt > CISBP-RNA/Arthroderma_benhamiae.dna_encoded.meme Converted 3 motifs. Skipped 0 motifs. 0 conversion errors. Processing Ashbya_gossypii (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Ashbya_gossypii.txt > CISBP-RNA/Ashbya_gossypii.dna_encoded.meme Converted 4 motifs. Skipped 0 motifs. 0 conversion errors. Processing Aspergillus_carbonarius (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Aspergillus_carbonarius.txt > CISBP-RNA/Aspergillus_carbonarius.dna_encoded.meme Converted 4 motifs. Skipped 0 motifs. 0 conversion errors. Processing Aspergillus_clavatus (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Aspergillus_clavatus.txt > CISBP-RNA/Aspergillus_clavatus.dna_encoded.meme Converted 4 motifs. Skipped 0 motifs. 0 conversion errors. Processing Aspergillus_flavus (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Aspergillus_flavus.txt > CISBP-RNA/Aspergillus_flavus.dna_encoded.meme Converted 3 motifs. Skipped 0 motifs. 0 conversion errors. Processing Aspergillus_fumigatus (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Aspergillus_fumigatus.txt > CISBP-RNA/Aspergillus_fumigatus.dna_encoded.meme Converted 4 motifs. Skipped 0 motifs. 0 conversion errors. Processing Aspergillus_nidulans (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Aspergillus_nidulans.txt > CISBP-RNA/Aspergillus_nidulans.dna_encoded.meme Converted 4 motifs. Skipped 0 motifs. 0 conversion errors. Processing Aspergillus_niger (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Aspergillus_niger.txt > CISBP-RNA/Aspergillus_niger.dna_encoded.meme Converted 2 motifs. Skipped 0 motifs. 0 conversion errors. Processing Aspergillus_oryzae (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Aspergillus_oryzae.txt > CISBP-RNA/Aspergillus_oryzae.dna_encoded.meme Converted 2 motifs. Skipped 0 motifs. 0 conversion errors. Processing Aspergillus_terreus (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Aspergillus_terreus.txt > CISBP-RNA/Aspergillus_terreus.dna_encoded.meme Converted 3 motifs. Skipped 0 motifs. 0 conversion errors. Processing Aureococcus_anophagefferens (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Aureococcus_anophagefferens.txt > CISBP-RNA/Aureococcus_anophagefferens.dna_encoded.meme Converted 2 motifs. Skipped 0 motifs. 0 conversion errors. Processing Batrachochytrium_dendrobatidis (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Batrachochytrium_dendrobatidis.txt > CISBP-RNA/Batrachochytrium_dendrobatidis.dna_encoded.meme Converted 2 motifs. Skipped 0 motifs. 0 conversion errors. Processing Blastomyces_dermatitidis (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Blastomyces_dermatitidis.txt > CISBP-RNA/Blastomyces_dermatitidis.dna_encoded.meme Converted 5 motifs. Skipped 0 motifs. 0 conversion errors. Processing Bombyx_mori (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Bombyx_mori.txt > CISBP-RNA/Bombyx_mori.dna_encoded.meme Converted 23 motifs. Skipped 0 motifs. 0 conversion errors. Processing Bos_taurus (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Bos_taurus.txt > CISBP-RNA/Bos_taurus.dna_encoded.meme Converted 87 motifs. Skipped 0 motifs. 0 conversion errors. Processing Botrytis_cinerea (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Botrytis_cinerea.txt > CISBP-RNA/Botrytis_cinerea.dna_encoded.meme Converted 3 motifs. Skipped 0 motifs. 0 conversion errors. Processing Brachypodium_distachyon (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Brachypodium_distachyon.txt > CISBP-RNA/Brachypodium_distachyon.dna_encoded.meme Converted 8 motifs. Skipped 0 motifs. 0 conversion errors. Processing Branchiostoma_floridae (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Branchiostoma_floridae.txt > CISBP-RNA/Branchiostoma_floridae.dna_encoded.meme Converted 34 motifs. Skipped 0 motifs. 0 conversion errors. Processing Brugia_malayi (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Brugia_malayi.txt > CISBP-RNA/Brugia_malayi.dna_encoded.meme Converted 10 motifs. Skipped 0 motifs. 0 conversion errors. Processing Caenorhabditis_brenneri (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Caenorhabditis_brenneri.txt > CISBP-RNA/Caenorhabditis_brenneri.dna_encoded.meme Converted 19 motifs. Skipped 0 motifs. 0 conversion errors. Processing Caenorhabditis_briggsae (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Caenorhabditis_briggsae.txt > CISBP-RNA/Caenorhabditis_briggsae.dna_encoded.meme Converted 20 motifs. Skipped 0 motifs. 0 conversion errors. Processing Caenorhabditis_elegans (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Caenorhabditis_elegans.txt > CISBP-RNA/Caenorhabditis_elegans.dna_encoded.meme Converted 20 motifs. Skipped 0 motifs. 0 conversion errors. Processing Caenorhabditis_japonica (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Caenorhabditis_japonica.txt > CISBP-RNA/Caenorhabditis_japonica.dna_encoded.meme Converted 17 motifs. Skipped 0 motifs. 0 conversion errors. Processing Caenorhabditis_remanei (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Caenorhabditis_remanei.txt > CISBP-RNA/Caenorhabditis_remanei.dna_encoded.meme Converted 19 motifs. Skipped 0 motifs. 0 conversion errors. Processing Callithrix_jacchus (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Callithrix_jacchus.txt > CISBP-RNA/Callithrix_jacchus.dna_encoded.meme Converted 96 motifs. Skipped 0 motifs. 0 conversion errors. Processing Candida_albicans (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Candida_albicans.txt > CISBP-RNA/Candida_albicans.dna_encoded.meme Converted 1 motifs. Skipped 0 motifs. 0 conversion errors. Processing Candida_dubliniensis (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Candida_dubliniensis.txt > CISBP-RNA/Candida_dubliniensis.dna_encoded.meme Converted 1 motifs. Skipped 0 motifs. 0 conversion errors. Processing Candida_glabrata (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Candida_glabrata.txt > CISBP-RNA/Candida_glabrata.dna_encoded.meme Converted 4 motifs. Skipped 0 motifs. 0 conversion errors. Processing Candida_guilliermondii (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Candida_guilliermondii.txt > CISBP-RNA/Candida_guilliermondii.dna_encoded.meme Converted 1 motifs. Skipped 0 motifs. 0 conversion errors. Processing Candida_lusitaniae (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Candida_lusitaniae.txt > CISBP-RNA/Candida_lusitaniae.dna_encoded.meme Converted 1 motifs. Skipped 0 motifs. 0 conversion errors. Processing Candida_parapsilosis (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Candida_parapsilosis.txt > CISBP-RNA/Candida_parapsilosis.dna_encoded.meme Converted 1 motifs. Skipped 0 motifs. 0 conversion errors. Processing Candida_tropicalis (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Candida_tropicalis.txt > CISBP-RNA/Candida_tropicalis.dna_encoded.meme Converted 1 motifs. Skipped 0 motifs. 0 conversion errors. Processing Canis_familiaris (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Canis_familiaris.txt > CISBP-RNA/Canis_familiaris.dna_encoded.meme Converted 83 motifs. Skipped 0 motifs. 0 conversion errors. Processing Cannabis_sativa (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Cannabis_sativa.txt > CISBP-RNA/Cannabis_sativa.dna_encoded.meme Converted 7 motifs. Skipped 0 motifs. 0 conversion errors. Processing Capitella_teleta (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Capitella_teleta.txt > CISBP-RNA/Capitella_teleta.dna_encoded.meme Converted 27 motifs. Skipped 0 motifs. 0 conversion errors. Processing Capsaspora_owczarzaki (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Capsaspora_owczarzaki.txt > CISBP-RNA/Capsaspora_owczarzaki.dna_encoded.meme Converted 2 motifs. Skipped 0 motifs. 0 conversion errors. Processing Cavia_porcellus (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Cavia_porcellus.txt > CISBP-RNA/Cavia_porcellus.dna_encoded.meme Converted 89 motifs. Skipped 0 motifs. 0 conversion errors. Processing Chaetomium_globosum (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Chaetomium_globosum.txt > CISBP-RNA/Chaetomium_globosum.dna_encoded.meme Converted 5 motifs. Skipped 0 motifs. 0 conversion errors. Processing Chlamydomonas_reinhardtii (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Chlamydomonas_reinhardtii.txt > CISBP-RNA/Chlamydomonas_reinhardtii.dna_encoded.meme Converted 2 motifs. Skipped 0 motifs. 0 conversion errors. Processing Chlorella_NC64A (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Chlorella_NC64A.txt > CISBP-RNA/Chlorella_NC64A.dna_encoded.meme Converted 3 motifs. Skipped 0 motifs. 0 conversion errors. Processing Chlorella_vulgaris (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Chlorella_vulgaris.txt > CISBP-RNA/Chlorella_vulgaris.dna_encoded.meme Converted 2 motifs. Skipped 0 motifs. 0 conversion errors. Processing Choloepus_hoffmanni (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Choloepus_hoffmanni.txt > CISBP-RNA/Choloepus_hoffmanni.dna_encoded.meme Converted 42 motifs. Skipped 0 motifs. 0 conversion errors. Processing Ciona_intestinalis (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Ciona_intestinalis.txt > CISBP-RNA/Ciona_intestinalis.dna_encoded.meme Converted 17 motifs. Skipped 0 motifs. 0 conversion errors. Processing Ciona_savignyi (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Ciona_savignyi.txt > CISBP-RNA/Ciona_savignyi.dna_encoded.meme Converted 16 motifs. Skipped 0 motifs. 0 conversion errors. Processing Coccidioides_immitis (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Coccidioides_immitis.txt > CISBP-RNA/Coccidioides_immitis.dna_encoded.meme Converted 4 motifs. Skipped 0 motifs. 0 conversion errors. Processing Coccidioides_posadasii (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Coccidioides_posadasii.txt > CISBP-RNA/Coccidioides_posadasii.dna_encoded.meme Converted 3 motifs. Skipped 0 motifs. 0 conversion errors. Processing Coccomyxa_C_169 (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Coccomyxa_C_169.txt > CISBP-RNA/Coccomyxa_C_169.dna_encoded.meme Converted 2 motifs. Skipped 0 motifs. 0 conversion errors. Processing Cochliobolus_heterostrophus_C5 (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Cochliobolus_heterostrophus_C5.txt > CISBP-RNA/Cochliobolus_heterostrophus_C5.dna_encoded.meme Converted 4 motifs. Skipped 0 motifs. 0 conversion errors. Processing Colletotrichum_graminicola (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Colletotrichum_graminicola.txt > CISBP-RNA/Colletotrichum_graminicola.dna_encoded.meme Converted 5 motifs. Skipped 0 motifs. 0 conversion errors. Processing Coprinopsis_cinerea (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Coprinopsis_cinerea.txt > CISBP-RNA/Coprinopsis_cinerea.dna_encoded.meme Converted 2 motifs. Skipped 0 motifs. 0 conversion errors. Processing Cryphonectria_parasitica (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Cryphonectria_parasitica.txt > CISBP-RNA/Cryphonectria_parasitica.dna_encoded.meme Converted 5 motifs. Skipped 0 motifs. 0 conversion errors. Processing Cryptosporidium_hominis (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Cryptosporidium_hominis.txt > CISBP-RNA/Cryptosporidium_hominis.dna_encoded.meme Converted 1 motifs. Skipped 0 motifs. 0 conversion errors. Processing Cryptosporidium_parvum (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Cryptosporidium_parvum.txt > CISBP-RNA/Cryptosporidium_parvum.dna_encoded.meme Converted 1 motifs. Skipped 0 motifs. 0 conversion errors. Processing Cucumis_sativus (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Cucumis_sativus.txt > CISBP-RNA/Cucumis_sativus.dna_encoded.meme Converted 8 motifs. Skipped 0 motifs. 0 conversion errors. Processing Culex_pipiens (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Culex_pipiens.txt > CISBP-RNA/Culex_pipiens.dna_encoded.meme Converted 28 motifs. Skipped 0 motifs. 0 conversion errors. Processing Culex_quinquefasciatus (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Culex_quinquefasciatus.txt > CISBP-RNA/Culex_quinquefasciatus.dna_encoded.meme Converted 28 motifs. Skipped 0 motifs. 0 conversion errors. Processing Danio_rerio (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Danio_rerio.txt > CISBP-RNA/Danio_rerio.dna_encoded.meme Converted 77 motifs. Skipped 0 motifs. 0 conversion errors. Processing Daphnia_pulex (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Daphnia_pulex.txt > CISBP-RNA/Daphnia_pulex.dna_encoded.meme Converted 28 motifs. Skipped 0 motifs. 0 conversion errors. Processing Dasypus_novemcinctus (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Dasypus_novemcinctus.txt > CISBP-RNA/Dasypus_novemcinctus.dna_encoded.meme Converted 48 motifs. Skipped 0 motifs. 0 conversion errors. Processing Debaryomyces_hansenii (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Debaryomyces_hansenii.txt > CISBP-RNA/Debaryomyces_hansenii.dna_encoded.meme Converted 1 motifs. Skipped 0 motifs. 0 conversion errors. Processing Dictyostelium_discoideum (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Dictyostelium_discoideum.txt > CISBP-RNA/Dictyostelium_discoideum.dna_encoded.meme Converted 1 motifs. Skipped 0 motifs. 0 conversion errors. Processing Dictyostelium_purpureum (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Dictyostelium_purpureum.txt > CISBP-RNA/Dictyostelium_purpureum.dna_encoded.meme Converted 1 motifs. Skipped 0 motifs. 0 conversion errors. Processing Dipodomys_ordii (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Dipodomys_ordii.txt > CISBP-RNA/Dipodomys_ordii.dna_encoded.meme Converted 63 motifs. Skipped 0 motifs. 0 conversion errors. Processing Drosophila_ananassae (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Drosophila_ananassae.txt > CISBP-RNA/Drosophila_ananassae.dna_encoded.meme Converted 46 motifs. Skipped 0 motifs. 0 conversion errors. Processing Drosophila_erecta (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Drosophila_erecta.txt > CISBP-RNA/Drosophila_erecta.dna_encoded.meme Converted 45 motifs. Skipped 0 motifs. 0 conversion errors. Processing Drosophila_grimshawi (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Drosophila_grimshawi.txt > CISBP-RNA/Drosophila_grimshawi.dna_encoded.meme Converted 43 motifs. Skipped 0 motifs. 0 conversion errors. Processing Drosophila_melanogaster (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Drosophila_melanogaster.txt > CISBP-RNA/Drosophila_melanogaster.dna_encoded.meme Converted 54 motifs. Skipped 0 motifs. 0 conversion errors. Processing Drosophila_mojavensis (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Drosophila_mojavensis.txt > CISBP-RNA/Drosophila_mojavensis.dna_encoded.meme Converted 47 motifs. Skipped 0 motifs. 0 conversion errors. Processing Drosophila_persimilis (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Drosophila_persimilis.txt > CISBP-RNA/Drosophila_persimilis.dna_encoded.meme Converted 37 motifs. Skipped 0 motifs. 0 conversion errors. Processing Drosophila_pseudoobscura (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Drosophila_pseudoobscura.txt > CISBP-RNA/Drosophila_pseudoobscura.dna_encoded.meme Converted 43 motifs. Skipped 0 motifs. 0 conversion errors. Processing Drosophila_sechellia (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Drosophila_sechellia.txt > CISBP-RNA/Drosophila_sechellia.dna_encoded.meme Converted 46 motifs. Skipped 0 motifs. 0 conversion errors. Processing Drosophila_simulans (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Drosophila_simulans.txt > CISBP-RNA/Drosophila_simulans.dna_encoded.meme Converted 40 motifs. Skipped 0 motifs. 0 conversion errors. Processing Drosophila_virilis (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Drosophila_virilis.txt > CISBP-RNA/Drosophila_virilis.dna_encoded.meme Converted 43 motifs. Skipped 0 motifs. 0 conversion errors. Processing Drosophila_willistoni (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Drosophila_willistoni.txt > CISBP-RNA/Drosophila_willistoni.dna_encoded.meme Converted 45 motifs. Skipped 0 motifs. 0 conversion errors. Processing Drosophila_yakuba (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Drosophila_yakuba.txt > CISBP-RNA/Drosophila_yakuba.dna_encoded.meme Converted 49 motifs. Skipped 0 motifs. 0 conversion errors. Processing Echinops_telfairi (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Echinops_telfairi.txt > CISBP-RNA/Echinops_telfairi.dna_encoded.meme Converted 58 motifs. Skipped 0 motifs. 0 conversion errors. Processing Emiliania_huxleyi (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Emiliania_huxleyi.txt > CISBP-RNA/Emiliania_huxleyi.dna_encoded.meme Converted 2 motifs. Skipped 0 motifs. 0 conversion errors. Processing Equus_caballus (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Equus_caballus.txt > CISBP-RNA/Equus_caballus.dna_encoded.meme Converted 85 motifs. Skipped 0 motifs. 0 conversion errors. Processing Erinaceus_europaeus (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Erinaceus_europaeus.txt > CISBP-RNA/Erinaceus_europaeus.dna_encoded.meme Converted 53 motifs. Skipped 0 motifs. 0 conversion errors. Processing Felis_catus (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Felis_catus.txt > CISBP-RNA/Felis_catus.dna_encoded.meme Converted 39 motifs. Skipped 0 motifs. 0 conversion errors. Processing Fragilariopsis_cylindrus (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Fragilariopsis_cylindrus.txt > CISBP-RNA/Fragilariopsis_cylindrus.dna_encoded.meme Converted 1 motifs. Skipped 0 motifs. 0 conversion errors. Processing Fusarium_graminearum (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Fusarium_graminearum.txt > CISBP-RNA/Fusarium_graminearum.dna_encoded.meme Converted 3 motifs. Skipped 0 motifs. 0 conversion errors. Processing Fusarium_oxysporum (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Fusarium_oxysporum.txt > CISBP-RNA/Fusarium_oxysporum.dna_encoded.meme Converted 4 motifs. Skipped 0 motifs. 0 conversion errors. Processing Fusarium_verticillioides (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Fusarium_verticillioides.txt > CISBP-RNA/Fusarium_verticillioides.dna_encoded.meme Converted 4 motifs. Skipped 0 motifs. 0 conversion errors. Processing Gallus_gallus (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Gallus_gallus.txt > CISBP-RNA/Gallus_gallus.dna_encoded.meme Converted 65 motifs. Skipped 0 motifs. 0 conversion errors. Processing Gasterosteus_aculeatus (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Gasterosteus_aculeatus.txt > CISBP-RNA/Gasterosteus_aculeatus.dna_encoded.meme Converted 74 motifs. Skipped 0 motifs. 0 conversion errors. Processing Glycine_max (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Glycine_max.txt > CISBP-RNA/Glycine_max.dna_encoded.meme Converted 7 motifs. Skipped 0 motifs. 0 conversion errors. Processing Gorilla_gorilla (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Gorilla_gorilla.txt > CISBP-RNA/Gorilla_gorilla.dna_encoded.meme Converted 86 motifs. Skipped 0 motifs. 0 conversion errors. Processing Helobdella_robusta (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Helobdella_robusta.txt > CISBP-RNA/Helobdella_robusta.dna_encoded.meme Converted 20 motifs. Skipped 0 motifs. 0 conversion errors. Processing Heterobasidion_annosum (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Heterobasidion_annosum.txt > CISBP-RNA/Heterobasidion_annosum.dna_encoded.meme Converted 1 motifs. Skipped 0 motifs. 0 conversion errors. Processing Histoplasma_capsulatum (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Histoplasma_capsulatum.txt > CISBP-RNA/Histoplasma_capsulatum.dna_encoded.meme Converted 4 motifs. Skipped 0 motifs. 0 conversion errors. Processing Homo_sapiens (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Homo_sapiens.txt > CISBP-RNA/Homo_sapiens.dna_encoded.meme Converted 98 motifs. Skipped 0 motifs. 0 conversion errors. Processing Hydra_magnipapillata (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Hydra_magnipapillata.txt > CISBP-RNA/Hydra_magnipapillata.dna_encoded.meme Converted 11 motifs. Skipped 0 motifs. 0 conversion errors. Processing Ixodes_scapularis (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Ixodes_scapularis.txt > CISBP-RNA/Ixodes_scapularis.dna_encoded.meme Converted 16 motifs. Skipped 0 motifs. 0 conversion errors. Processing Kluyveromyces_lactis (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Kluyveromyces_lactis.txt > CISBP-RNA/Kluyveromyces_lactis.dna_encoded.meme Converted 4 motifs. Skipped 0 motifs. 0 conversion errors. Processing Kluyveromyces_thermotolerans (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Kluyveromyces_thermotolerans.txt > CISBP-RNA/Kluyveromyces_thermotolerans.dna_encoded.meme Converted 4 motifs. Skipped 0 motifs. 0 conversion errors. Processing Kluyveromyces_waltii (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Kluyveromyces_waltii.txt > CISBP-RNA/Kluyveromyces_waltii.dna_encoded.meme Converted 4 motifs. Skipped 0 motifs. 0 conversion errors. Processing Laccaria_bicolor (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Laccaria_bicolor.txt > CISBP-RNA/Laccaria_bicolor.dna_encoded.meme Converted 3 motifs. Skipped 0 motifs. 0 conversion errors. Processing Lachancea_kluyveri (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Lachancea_kluyveri.txt > CISBP-RNA/Lachancea_kluyveri.dna_encoded.meme Converted 4 motifs. Skipped 0 motifs. 0 conversion errors. Processing Leishmania_braziliensis (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Leishmania_braziliensis.txt > CISBP-RNA/Leishmania_braziliensis.dna_encoded.meme Converted 6 motifs. Skipped 0 motifs. 0 conversion errors. Processing Leishmania_infantum (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Leishmania_infantum.txt > CISBP-RNA/Leishmania_infantum.dna_encoded.meme Converted 5 motifs. Skipped 0 motifs. 0 conversion errors. Processing Leishmania_major (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Leishmania_major.txt > CISBP-RNA/Leishmania_major.dna_encoded.meme Converted 6 motifs. Skipped 0 motifs. 0 conversion errors. Processing Leishmania_mexicana (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Leishmania_mexicana.txt > CISBP-RNA/Leishmania_mexicana.dna_encoded.meme Converted 6 motifs. Skipped 0 motifs. 0 conversion errors. Processing Loa_loa (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Loa_loa.txt > CISBP-RNA/Loa_loa.dna_encoded.meme Converted 12 motifs. Skipped 0 motifs. 0 conversion errors. Processing Lodderomyces_elongisporus (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Lodderomyces_elongisporus.txt > CISBP-RNA/Lodderomyces_elongisporus.dna_encoded.meme Converted 1 motifs. Skipped 0 motifs. 0 conversion errors. Processing Lottia_gigantea (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Lottia_gigantea.txt > CISBP-RNA/Lottia_gigantea.dna_encoded.meme Converted 23 motifs. Skipped 0 motifs. 0 conversion errors. Processing Lotus_japonicus (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Lotus_japonicus.txt > CISBP-RNA/Lotus_japonicus.dna_encoded.meme Converted 6 motifs. Skipped 0 motifs. 0 conversion errors. Processing Loxodonta_africana (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Loxodonta_africana.txt > CISBP-RNA/Loxodonta_africana.dna_encoded.meme Converted 83 motifs. Skipped 0 motifs. 0 conversion errors. Processing Macaca_mulatta (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Macaca_mulatta.txt > CISBP-RNA/Macaca_mulatta.dna_encoded.meme Converted 84 motifs. Skipped 0 motifs. 0 conversion errors. Processing Macropus_eugenii (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Macropus_eugenii.txt > CISBP-RNA/Macropus_eugenii.dna_encoded.meme Converted 55 motifs. Skipped 0 motifs. 0 conversion errors. Processing Magnaporthe_oryzae (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Magnaporthe_oryzae.txt > CISBP-RNA/Magnaporthe_oryzae.dna_encoded.meme Converted 5 motifs. Skipped 0 motifs. 0 conversion errors. Processing Malassezia_globosa (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Malassezia_globosa.txt > CISBP-RNA/Malassezia_globosa.dna_encoded.meme Converted 1 motifs. Skipped 0 motifs. 0 conversion errors. Processing Malus_x_domestica (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Malus_x_domestica.txt > CISBP-RNA/Malus_x_domestica.dna_encoded.meme Converted 7 motifs. Skipped 0 motifs. 0 conversion errors. Processing Manihot_esculenta (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Manihot_esculenta.txt > CISBP-RNA/Manihot_esculenta.dna_encoded.meme Converted 7 motifs. Skipped 0 motifs. 0 conversion errors. Processing Medicago_truncatula (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Medicago_truncatula.txt > CISBP-RNA/Medicago_truncatula.dna_encoded.meme Converted 7 motifs. Skipped 0 motifs. 0 conversion errors. Processing Melampsora_laricis_populina (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Melampsora_laricis_populina.txt > CISBP-RNA/Melampsora_laricis_populina.dna_encoded.meme Converted 2 motifs. Skipped 0 motifs. 0 conversion errors. Processing Meleagris_gallopavo (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Meleagris_gallopavo.txt > CISBP-RNA/Meleagris_gallopavo.dna_encoded.meme Converted 60 motifs. Skipped 0 motifs. 0 conversion errors. Processing Meloidogyne_incognita (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Meloidogyne_incognita.txt > CISBP-RNA/Meloidogyne_incognita.dna_encoded.meme Converted 8 motifs. Skipped 0 motifs. 0 conversion errors. Processing Microcebus_murinus (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Microcebus_murinus.txt > CISBP-RNA/Microcebus_murinus.dna_encoded.meme Converted 61 motifs. Skipped 0 motifs. 0 conversion errors. Processing Micromonas_pusilla (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Micromonas_pusilla.txt > CISBP-RNA/Micromonas_pusilla.dna_encoded.meme Converted 2 motifs. Skipped 0 motifs. 0 conversion errors. Processing Microsporum_canis (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Microsporum_canis.txt > CISBP-RNA/Microsporum_canis.dna_encoded.meme Converted 3 motifs. Skipped 0 motifs. 0 conversion errors. Processing Microsporum_gypseum (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Microsporum_gypseum.txt > CISBP-RNA/Microsporum_gypseum.dna_encoded.meme Converted 3 motifs. Skipped 0 motifs. 0 conversion errors. Processing Mimulus_guttatus (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Mimulus_guttatus.txt > CISBP-RNA/Mimulus_guttatus.dna_encoded.meme Converted 7 motifs. Skipped 0 motifs. 0 conversion errors. Processing Monodelphis_domestica (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Monodelphis_domestica.txt > CISBP-RNA/Monodelphis_domestica.dna_encoded.meme Converted 86 motifs. Skipped 0 motifs. 0 conversion errors. Processing Monosiga_brevicollis (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Monosiga_brevicollis.txt > CISBP-RNA/Monosiga_brevicollis.dna_encoded.meme Converted 2 motifs. Skipped 0 motifs. 0 conversion errors. Processing Mucor_circinelloides (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Mucor_circinelloides.txt > CISBP-RNA/Mucor_circinelloides.dna_encoded.meme Converted 3 motifs. Skipped 0 motifs. 0 conversion errors. Processing Mus_musculus (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Mus_musculus.txt > CISBP-RNA/Mus_musculus.dna_encoded.meme Converted 93 motifs. Skipped 0 motifs. 0 conversion errors. Processing Myceliophthora_thermophila (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Myceliophthora_thermophila.txt > CISBP-RNA/Myceliophthora_thermophila.dna_encoded.meme Converted 5 motifs. Skipped 0 motifs. 0 conversion errors. Processing Mycosphaerella_fijiensis (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Mycosphaerella_fijiensis.txt > CISBP-RNA/Mycosphaerella_fijiensis.dna_encoded.meme Converted 3 motifs. Skipped 0 motifs. 0 conversion errors. Processing Mycosphaerella_graminicola (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Mycosphaerella_graminicola.txt > CISBP-RNA/Mycosphaerella_graminicola.dna_encoded.meme Converted 3 motifs. Skipped 0 motifs. 0 conversion errors. Processing Myotis_lucifugus (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Myotis_lucifugus.txt > CISBP-RNA/Myotis_lucifugus.dna_encoded.meme Converted 66 motifs. Skipped 0 motifs. 0 conversion errors. Processing Naegleria_gruberi (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Naegleria_gruberi.txt > CISBP-RNA/Naegleria_gruberi.dna_encoded.meme Converted 1 motifs. Skipped 0 motifs. 0 conversion errors. Processing Nasonia_vitripennis (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Nasonia_vitripennis.txt > CISBP-RNA/Nasonia_vitripennis.dna_encoded.meme Converted 32 motifs. Skipped 0 motifs. 0 conversion errors. Processing Nectria_haematococca (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Nectria_haematococca.txt > CISBP-RNA/Nectria_haematococca.dna_encoded.meme Converted 5 motifs. Skipped 0 motifs. 0 conversion errors. Processing Nematostella_vectensis (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Nematostella_vectensis.txt > CISBP-RNA/Nematostella_vectensis.dna_encoded.meme Converted 17 motifs. Skipped 0 motifs. 0 conversion errors. Processing Neosartorya_fischeri (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Neosartorya_fischeri.txt > CISBP-RNA/Neosartorya_fischeri.dna_encoded.meme Converted 4 motifs. Skipped 0 motifs. 0 conversion errors. Processing Neospora_caninum (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Neospora_caninum.txt > CISBP-RNA/Neospora_caninum.dna_encoded.meme Converted 1 motifs. Skipped 0 motifs. 0 conversion errors. Processing Neurospora_crassa (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Neurospora_crassa.txt > CISBP-RNA/Neurospora_crassa.dna_encoded.meme Converted 5 motifs. Skipped 0 motifs. 0 conversion errors. Processing Neurospora_discreta (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Neurospora_discreta.txt > CISBP-RNA/Neurospora_discreta.dna_encoded.meme Converted 4 motifs. Skipped 0 motifs. 0 conversion errors. Processing Neurospora_tetrasperma (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Neurospora_tetrasperma.txt > CISBP-RNA/Neurospora_tetrasperma.dna_encoded.meme Converted 5 motifs. Skipped 0 motifs. 0 conversion errors. Processing Ochotona_princeps (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Ochotona_princeps.txt > CISBP-RNA/Ochotona_princeps.dna_encoded.meme Converted 64 motifs. Skipped 0 motifs. 0 conversion errors. Processing Oikopleura_dioica (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Oikopleura_dioica.txt > CISBP-RNA/Oikopleura_dioica.dna_encoded.meme Converted 9 motifs. Skipped 0 motifs. 0 conversion errors. Processing Ornithorhynchus_anatinus (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Ornithorhynchus_anatinus.txt > CISBP-RNA/Ornithorhynchus_anatinus.dna_encoded.meme Converted 61 motifs. Skipped 0 motifs. 0 conversion errors. Processing Oryctolagus_cuniculus (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Oryctolagus_cuniculus.txt > CISBP-RNA/Oryctolagus_cuniculus.dna_encoded.meme Converted 88 motifs. Skipped 0 motifs. 0 conversion errors. Processing Oryza_indica (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Oryza_indica.txt > CISBP-RNA/Oryza_indica.dna_encoded.meme Converted 6 motifs. Skipped 0 motifs. 0 conversion errors. Processing Oryza_sativa (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Oryza_sativa.txt > CISBP-RNA/Oryza_sativa.dna_encoded.meme Converted 7 motifs. Skipped 0 motifs. 0 conversion errors. Processing Oryzias_latipes (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Oryzias_latipes.txt > CISBP-RNA/Oryzias_latipes.dna_encoded.meme Converted 68 motifs. Skipped 0 motifs. 0 conversion errors. Processing Ostreococcus_RCC809 (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Ostreococcus_RCC809.txt > CISBP-RNA/Ostreococcus_RCC809.dna_encoded.meme Converted 3 motifs. Skipped 0 motifs. 0 conversion errors. Processing Ostreococcus_lucimarinus (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Ostreococcus_lucimarinus.txt > CISBP-RNA/Ostreococcus_lucimarinus.dna_encoded.meme Converted 2 motifs. Skipped 0 motifs. 0 conversion errors. Processing Ostreococcus_tauri (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Ostreococcus_tauri.txt > CISBP-RNA/Ostreococcus_tauri.dna_encoded.meme Converted 4 motifs. Skipped 0 motifs. 0 conversion errors. Processing Otolemur_garnettii (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Otolemur_garnettii.txt > CISBP-RNA/Otolemur_garnettii.dna_encoded.meme Converted 47 motifs. Skipped 0 motifs. 0 conversion errors. Processing Pan_troglodytes (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Pan_troglodytes.txt > CISBP-RNA/Pan_troglodytes.dna_encoded.meme Converted 96 motifs. Skipped 0 motifs. 0 conversion errors. Processing Paracoccidioides_brasiliensis (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Paracoccidioides_brasiliensis.txt > CISBP-RNA/Paracoccidioides_brasiliensis.dna_encoded.meme Converted 2 motifs. Skipped 0 motifs. 0 conversion errors. Processing Pediculus_humanus (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Pediculus_humanus.txt > CISBP-RNA/Pediculus_humanus.dna_encoded.meme Converted 31 motifs. Skipped 0 motifs. 0 conversion errors. Processing Penicillium_chrysogenum (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Penicillium_chrysogenum.txt > CISBP-RNA/Penicillium_chrysogenum.dna_encoded.meme Converted 2 motifs. Skipped 0 motifs. 0 conversion errors. Processing Penicillium_marneffei (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Penicillium_marneffei.txt > CISBP-RNA/Penicillium_marneffei.dna_encoded.meme Converted 4 motifs. Skipped 0 motifs. 0 conversion errors. Processing Phaeodactylum_tricornutum (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Phaeodactylum_tricornutum.txt > CISBP-RNA/Phaeodactylum_tricornutum.dna_encoded.meme Converted 1 motifs. Skipped 0 motifs. 0 conversion errors. Processing Phaeosphaeria_nodorum (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Phaeosphaeria_nodorum.txt > CISBP-RNA/Phaeosphaeria_nodorum.dna_encoded.meme Converted 3 motifs. Skipped 0 motifs. 0 conversion errors. Processing Phanerochaete_chrysosporium (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Phanerochaete_chrysosporium.txt > CISBP-RNA/Phanerochaete_chrysosporium.dna_encoded.meme Converted 3 motifs. Skipped 0 motifs. 0 conversion errors. Processing Phoenix_dactylifera (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Phoenix_dactylifera.txt > CISBP-RNA/Phoenix_dactylifera.dna_encoded.meme Converted 3 motifs. Skipped 0 motifs. 0 conversion errors. Processing Phycomyces_blakesleeanus (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Phycomyces_blakesleeanus.txt > CISBP-RNA/Phycomyces_blakesleeanus.dna_encoded.meme Converted 4 motifs. Skipped 0 motifs. 0 conversion errors. Processing Physcomitrella_patens (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Physcomitrella_patens.txt > CISBP-RNA/Physcomitrella_patens.dna_encoded.meme Converted 7 motifs. Skipped 0 motifs. 0 conversion errors. Processing Phytophthora_capsici (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Phytophthora_capsici.txt > CISBP-RNA/Phytophthora_capsici.dna_encoded.meme Converted 2 motifs. Skipped 0 motifs. 0 conversion errors. Processing Phytophthora_infestans (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Phytophthora_infestans.txt > CISBP-RNA/Phytophthora_infestans.dna_encoded.meme Converted 2 motifs. Skipped 0 motifs. 0 conversion errors. Processing Phytophthora_ramorum (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Phytophthora_ramorum.txt > CISBP-RNA/Phytophthora_ramorum.dna_encoded.meme Converted 2 motifs. Skipped 0 motifs. 0 conversion errors. Processing Phytophthora_sojae (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Phytophthora_sojae.txt > CISBP-RNA/Phytophthora_sojae.dna_encoded.meme Converted 1 motifs. Skipped 0 motifs. 0 conversion errors. Processing Pichia_pastoris (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Pichia_pastoris.txt > CISBP-RNA/Pichia_pastoris.dna_encoded.meme Converted 1 motifs. Skipped 0 motifs. 0 conversion errors. Processing Pichia_stipitis (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Pichia_stipitis.txt > CISBP-RNA/Pichia_stipitis.dna_encoded.meme Converted 1 motifs. Skipped 0 motifs. 0 conversion errors. Processing Plasmodium_berghei (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Plasmodium_berghei.txt > CISBP-RNA/Plasmodium_berghei.dna_encoded.meme Converted 7 motifs. Skipped 0 motifs. 0 conversion errors. Processing Plasmodium_chabaudi (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Plasmodium_chabaudi.txt > CISBP-RNA/Plasmodium_chabaudi.dna_encoded.meme Converted 8 motifs. Skipped 0 motifs. 0 conversion errors. Processing Plasmodium_falciparum (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Plasmodium_falciparum.txt > CISBP-RNA/Plasmodium_falciparum.dna_encoded.meme Converted 8 motifs. Skipped 0 motifs. 0 conversion errors. Processing Plasmodium_knowlesi (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Plasmodium_knowlesi.txt > CISBP-RNA/Plasmodium_knowlesi.dna_encoded.meme Converted 7 motifs. Skipped 0 motifs. 0 conversion errors. Processing Plasmodium_vivax (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Plasmodium_vivax.txt > CISBP-RNA/Plasmodium_vivax.dna_encoded.meme Converted 7 motifs. Skipped 0 motifs. 0 conversion errors. Processing Plasmodium_yoelii (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Plasmodium_yoelii.txt > CISBP-RNA/Plasmodium_yoelii.dna_encoded.meme Converted 5 motifs. Skipped 0 motifs. 0 conversion errors. Processing Pleurotus_ostreatus (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Pleurotus_ostreatus.txt > CISBP-RNA/Pleurotus_ostreatus.dna_encoded.meme Converted 3 motifs. Skipped 0 motifs. 0 conversion errors. Processing Pneumocystis_carinii (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Pneumocystis_carinii.txt > CISBP-RNA/Pneumocystis_carinii.dna_encoded.meme Converted 3 motifs. Skipped 0 motifs. 0 conversion errors. Processing Podospora_anserina (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Podospora_anserina.txt > CISBP-RNA/Podospora_anserina.dna_encoded.meme Converted 5 motifs. Skipped 0 motifs. 0 conversion errors. Processing Polysphondylium_pallidum (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Polysphondylium_pallidum.txt > CISBP-RNA/Polysphondylium_pallidum.dna_encoded.meme Converted 2 motifs. Skipped 0 motifs. 0 conversion errors. Processing Pongo_pygmaeus (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Pongo_pygmaeus.txt > CISBP-RNA/Pongo_pygmaeus.dna_encoded.meme Converted 81 motifs. Skipped 0 motifs. 0 conversion errors. Processing Populus_trichocarpa (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Populus_trichocarpa.txt > CISBP-RNA/Populus_trichocarpa.dna_encoded.meme Converted 8 motifs. Skipped 0 motifs. 0 conversion errors. Processing Postia_placenta (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Postia_placenta.txt > CISBP-RNA/Postia_placenta.dna_encoded.meme Converted 3 motifs. Skipped 0 motifs. 0 conversion errors. Processing Pristionchus_pacificus (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Pristionchus_pacificus.txt > CISBP-RNA/Pristionchus_pacificus.dna_encoded.meme Converted 6 motifs. Skipped 0 motifs. 0 conversion errors. Processing Procavia_capensis (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Procavia_capensis.txt > CISBP-RNA/Procavia_capensis.dna_encoded.meme Converted 57 motifs. Skipped 0 motifs. 0 conversion errors. Processing Prunus_persica (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Prunus_persica.txt > CISBP-RNA/Prunus_persica.dna_encoded.meme Converted 7 motifs. Skipped 0 motifs. 0 conversion errors. Processing Pteropus_vampyrus (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Pteropus_vampyrus.txt > CISBP-RNA/Pteropus_vampyrus.dna_encoded.meme Converted 80 motifs. Skipped 0 motifs. 0 conversion errors. Processing Pyrenophora_tritici_repentis (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Pyrenophora_tritici_repentis.txt > CISBP-RNA/Pyrenophora_tritici_repentis.dna_encoded.meme Converted 4 motifs. Skipped 0 motifs. 0 conversion errors. Processing RNAcompete_CONSTRUCTS (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/RNAcompete_CONSTRUCTS.txt > CISBP-RNA/RNAcompete_CONSTRUCTS.dna_encoded.meme Converted 13 motifs. Skipped 0 motifs. 0 conversion errors. Processing Rattus_norvegicus (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Rattus_norvegicus.txt > CISBP-RNA/Rattus_norvegicus.dna_encoded.meme Converted 91 motifs. Skipped 0 motifs. 0 conversion errors. Processing Rhizopus_oryzae (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Rhizopus_oryzae.txt > CISBP-RNA/Rhizopus_oryzae.dna_encoded.meme Converted 3 motifs. Skipped 0 motifs. 0 conversion errors. Processing Ricinus_communis (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Ricinus_communis.txt > CISBP-RNA/Ricinus_communis.dna_encoded.meme Converted 7 motifs. Skipped 0 motifs. 0 conversion errors. Processing Saccharomyces_bayanus (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Saccharomyces_bayanus.txt > CISBP-RNA/Saccharomyces_bayanus.dna_encoded.meme Converted 4 motifs. Skipped 0 motifs. 0 conversion errors. Processing Saccharomyces_castellii (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Saccharomyces_castellii.txt > CISBP-RNA/Saccharomyces_castellii.dna_encoded.meme Converted 3 motifs. Skipped 0 motifs. 0 conversion errors. Processing Saccharomyces_cerevisiae (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Saccharomyces_cerevisiae.txt > CISBP-RNA/Saccharomyces_cerevisiae.dna_encoded.meme Converted 4 motifs. Skipped 0 motifs. 0 conversion errors. Processing Saccharomyces_kudriavzevii (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Saccharomyces_kudriavzevii.txt > CISBP-RNA/Saccharomyces_kudriavzevii.dna_encoded.meme Converted 2 motifs. Skipped 0 motifs. 0 conversion errors. Processing Saccharomyces_mikatae (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Saccharomyces_mikatae.txt > CISBP-RNA/Saccharomyces_mikatae.dna_encoded.meme Converted 4 motifs. Skipped 0 motifs. 0 conversion errors. Processing Saccharomyces_paradoxus (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Saccharomyces_paradoxus.txt > CISBP-RNA/Saccharomyces_paradoxus.dna_encoded.meme Converted 4 motifs. Skipped 0 motifs. 0 conversion errors. Processing Salpingoeca_rosetta (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Salpingoeca_rosetta.txt > CISBP-RNA/Salpingoeca_rosetta.dna_encoded.meme Converted 3 motifs. Skipped 0 motifs. 0 conversion errors. Processing Saprolegnia_parasitica (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Saprolegnia_parasitica.txt > CISBP-RNA/Saprolegnia_parasitica.dna_encoded.meme Converted 1 motifs. Skipped 0 motifs. 0 conversion errors. Processing Schistosoma_japonicum (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Schistosoma_japonicum.txt > CISBP-RNA/Schistosoma_japonicum.dna_encoded.meme Converted 6 motifs. Skipped 0 motifs. 0 conversion errors. Processing Schistosoma_mansoni (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Schistosoma_mansoni.txt > CISBP-RNA/Schistosoma_mansoni.dna_encoded.meme Converted 11 motifs. Skipped 0 motifs. 0 conversion errors. Processing Schizophyllum_commune (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Schizophyllum_commune.txt > CISBP-RNA/Schizophyllum_commune.dna_encoded.meme Converted 4 motifs. Skipped 0 motifs. 0 conversion errors. Processing Schizosaccharomyces_cryophilus (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Schizosaccharomyces_cryophilus.txt > CISBP-RNA/Schizosaccharomyces_cryophilus.dna_encoded.meme Converted 1 motifs. Skipped 0 motifs. 0 conversion errors. Processing Schizosaccharomyces_japonicus (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Schizosaccharomyces_japonicus.txt > CISBP-RNA/Schizosaccharomyces_japonicus.dna_encoded.meme Converted 1 motifs. Skipped 0 motifs. 0 conversion errors. Processing Schizosaccharomyces_octosporus (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Schizosaccharomyces_octosporus.txt > CISBP-RNA/Schizosaccharomyces_octosporus.dna_encoded.meme Converted 2 motifs. Skipped 0 motifs. 0 conversion errors. Processing Schizosaccharomyces_pombe (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Schizosaccharomyces_pombe.txt > CISBP-RNA/Schizosaccharomyces_pombe.dna_encoded.meme Converted 1 motifs. Skipped 0 motifs. 0 conversion errors. Processing Sclerotinia_sclerotiorum (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Sclerotinia_sclerotiorum.txt > CISBP-RNA/Sclerotinia_sclerotiorum.dna_encoded.meme Converted 3 motifs. Skipped 0 motifs. 0 conversion errors. Processing Selaginella_moellendorfii (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Selaginella_moellendorfii.txt > CISBP-RNA/Selaginella_moellendorfii.dna_encoded.meme Converted 6 motifs. Skipped 0 motifs. 0 conversion errors. Processing Serpula_lacrymans (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Serpula_lacrymans.txt > CISBP-RNA/Serpula_lacrymans.dna_encoded.meme Converted 3 motifs. Skipped 0 motifs. 0 conversion errors. Processing Sorex_araneus (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Sorex_araneus.txt > CISBP-RNA/Sorex_araneus.dna_encoded.meme Converted 49 motifs. Skipped 0 motifs. 0 conversion errors. Processing Sorghum_bicolor (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Sorghum_bicolor.txt > CISBP-RNA/Sorghum_bicolor.dna_encoded.meme Converted 7 motifs. Skipped 0 motifs. 0 conversion errors. Processing Spermophilus_tridecemlineatus (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Spermophilus_tridecemlineatus.txt > CISBP-RNA/Spermophilus_tridecemlineatus.dna_encoded.meme Converted 44 motifs. Skipped 0 motifs. 0 conversion errors. Processing Spizellomyces_punctatus (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Spizellomyces_punctatus.txt > CISBP-RNA/Spizellomyces_punctatus.dna_encoded.meme Converted 4 motifs. Skipped 0 motifs. 0 conversion errors. Processing Sporobolomyces_roseus (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Sporobolomyces_roseus.txt > CISBP-RNA/Sporobolomyces_roseus.dna_encoded.meme Converted 1 motifs. Skipped 0 motifs. 0 conversion errors. Processing Stagonospora_nodorum (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Stagonospora_nodorum.txt > CISBP-RNA/Stagonospora_nodorum.dna_encoded.meme Converted 4 motifs. Skipped 0 motifs. 0 conversion errors. Processing Strongylocentrotus_purpuratus (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Strongylocentrotus_purpuratus.txt > CISBP-RNA/Strongylocentrotus_purpuratus.dna_encoded.meme Converted 20 motifs. Skipped 0 motifs. 0 conversion errors. Processing Sus_scrofa (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Sus_scrofa.txt > CISBP-RNA/Sus_scrofa.dna_encoded.meme Converted 64 motifs. Skipped 0 motifs. 0 conversion errors. Processing Taeniopygia_guttata (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Taeniopygia_guttata.txt > CISBP-RNA/Taeniopygia_guttata.dna_encoded.meme Converted 70 motifs. Skipped 0 motifs. 0 conversion errors. Processing Takifugu_rubripes (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Takifugu_rubripes.txt > CISBP-RNA/Takifugu_rubripes.dna_encoded.meme Converted 69 motifs. Skipped 0 motifs. 0 conversion errors. Processing Tarsius_syrichta (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Tarsius_syrichta.txt > CISBP-RNA/Tarsius_syrichta.dna_encoded.meme Converted 53 motifs. Skipped 0 motifs. 0 conversion errors. Processing Tetraodon_nigroviridis (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Tetraodon_nigroviridis.txt > CISBP-RNA/Tetraodon_nigroviridis.dna_encoded.meme Converted 72 motifs. Skipped 0 motifs. 0 conversion errors. Processing Thalassiosira_pseudonana (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Thalassiosira_pseudonana.txt > CISBP-RNA/Thalassiosira_pseudonana.dna_encoded.meme Converted 2 motifs. Skipped 0 motifs. 0 conversion errors. Processing Thecamonas_trahens (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Thecamonas_trahens.txt > CISBP-RNA/Thecamonas_trahens.dna_encoded.meme Converted 1 motifs. Skipped 0 motifs. 0 conversion errors. Processing Thielavia_terrestris (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Thielavia_terrestris.txt > CISBP-RNA/Thielavia_terrestris.dna_encoded.meme Converted 5 motifs. Skipped 0 motifs. 0 conversion errors. Processing Toxoplasma_gondii (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Toxoplasma_gondii.txt > CISBP-RNA/Toxoplasma_gondii.dna_encoded.meme Converted 1 motifs. Skipped 0 motifs. 0 conversion errors. Processing Tremella_mesenterica (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Tremella_mesenterica.txt > CISBP-RNA/Tremella_mesenterica.dna_encoded.meme Converted 2 motifs. Skipped 0 motifs. 0 conversion errors. Processing Tribolium_castaneum (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Tribolium_castaneum.txt > CISBP-RNA/Tribolium_castaneum.dna_encoded.meme Converted 3 motifs. Skipped 0 motifs. 0 conversion errors. Processing Trichoderma_atroviride (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Trichoderma_atroviride.txt > CISBP-RNA/Trichoderma_atroviride.dna_encoded.meme Converted 4 motifs. Skipped 0 motifs. 0 conversion errors. Processing Trichoderma_reesei (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Trichoderma_reesei.txt > CISBP-RNA/Trichoderma_reesei.dna_encoded.meme Converted 5 motifs. Skipped 0 motifs. 0 conversion errors. Processing Trichoderma_virens (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Trichoderma_virens.txt > CISBP-RNA/Trichoderma_virens.dna_encoded.meme Converted 5 motifs. Skipped 0 motifs. 0 conversion errors. Processing Trichomonas_vaginalis (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Trichomonas_vaginalis.txt > CISBP-RNA/Trichomonas_vaginalis.dna_encoded.meme Converted 5 motifs. Skipped 0 motifs. 0 conversion errors. Processing Trichophyton_equinum (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Trichophyton_equinum.txt > CISBP-RNA/Trichophyton_equinum.dna_encoded.meme Converted 3 motifs. Skipped 0 motifs. 0 conversion errors. Processing Trichophyton_rubrum (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Trichophyton_rubrum.txt > CISBP-RNA/Trichophyton_rubrum.dna_encoded.meme Converted 3 motifs. Skipped 0 motifs. 0 conversion errors. Processing Trichophyton_tonsurans (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Trichophyton_tonsurans.txt > CISBP-RNA/Trichophyton_tonsurans.dna_encoded.meme Converted 4 motifs. Skipped 0 motifs. 0 conversion errors. Processing Trichophyton_verrucosum (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Trichophyton_verrucosum.txt > CISBP-RNA/Trichophyton_verrucosum.dna_encoded.meme Converted 3 motifs. Skipped 0 motifs. 0 conversion errors. Processing Trichoplax_adhaerens (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Trichoplax_adhaerens.txt > CISBP-RNA/Trichoplax_adhaerens.dna_encoded.meme Converted 12 motifs. Skipped 0 motifs. 0 conversion errors. Processing Trypanosoma_brucei (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Trypanosoma_brucei.txt > CISBP-RNA/Trypanosoma_brucei.dna_encoded.meme Converted 11 motifs. Skipped 0 motifs. 0 conversion errors. Processing Trypanosoma_congolense (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Trypanosoma_congolense.txt > CISBP-RNA/Trypanosoma_congolense.dna_encoded.meme Converted 8 motifs. Skipped 0 motifs. 0 conversion errors. Processing Trypanosoma_cruzi (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Trypanosoma_cruzi.txt > CISBP-RNA/Trypanosoma_cruzi.dna_encoded.meme Converted 5 motifs. Skipped 0 motifs. 0 conversion errors. Processing Trypanosoma_vivax (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Trypanosoma_vivax.txt > CISBP-RNA/Trypanosoma_vivax.dna_encoded.meme Converted 5 motifs. Skipped 0 motifs. 0 conversion errors. Processing Tuber_melanosporum (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Tuber_melanosporum.txt > CISBP-RNA/Tuber_melanosporum.dna_encoded.meme Converted 3 motifs. Skipped 0 motifs. 0 conversion errors. Processing Tupaia_belangeri (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Tupaia_belangeri.txt > CISBP-RNA/Tupaia_belangeri.dna_encoded.meme Converted 51 motifs. Skipped 0 motifs. 0 conversion errors. Processing Tursiops_truncatus (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Tursiops_truncatus.txt > CISBP-RNA/Tursiops_truncatus.dna_encoded.meme Converted 79 motifs. Skipped 0 motifs. 0 conversion errors. Processing Uncinocarpus_reesii (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Uncinocarpus_reesii.txt > CISBP-RNA/Uncinocarpus_reesii.dna_encoded.meme Converted 4 motifs. Skipped 0 motifs. 0 conversion errors. Processing Ustilago_maydis (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Ustilago_maydis.txt > CISBP-RNA/Ustilago_maydis.dna_encoded.meme Converted 2 motifs. Skipped 0 motifs. 0 conversion errors. Processing Vanderwaltozyma_polyspora (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Vanderwaltozyma_polyspora.txt > CISBP-RNA/Vanderwaltozyma_polyspora.dna_encoded.meme Converted 4 motifs. Skipped 0 motifs. 0 conversion errors. Processing Verticillium_albo_atrum (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Verticillium_albo_atrum.txt > CISBP-RNA/Verticillium_albo_atrum.dna_encoded.meme Converted 2 motifs. Skipped 0 motifs. 0 conversion errors. Processing Verticillium_dahliae (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Verticillium_dahliae.txt > CISBP-RNA/Verticillium_dahliae.dna_encoded.meme Converted 4 motifs. Skipped 0 motifs. 0 conversion errors. Processing Vicugna_pacos (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Vicugna_pacos.txt > CISBP-RNA/Vicugna_pacos.dna_encoded.meme Converted 54 motifs. Skipped 0 motifs. 0 conversion errors. Processing Vitis_vinifera (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Vitis_vinifera.txt > CISBP-RNA/Vitis_vinifera.dna_encoded.meme Converted 7 motifs. Skipped 0 motifs. 0 conversion errors. Processing Volvox_carteri (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Volvox_carteri.txt > CISBP-RNA/Volvox_carteri.dna_encoded.meme Converted 1 motifs. Skipped 0 motifs. 0 conversion errors. Processing Wuchereria_bancrofti (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Wuchereria_bancrofti.txt > CISBP-RNA/Wuchereria_bancrofti.dna_encoded.meme Converted 11 motifs. Skipped 0 motifs. 0 conversion errors. Processing Xenopus_laevis (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Xenopus_laevis.txt > CISBP-RNA/Xenopus_laevis.dna_encoded.meme Converted 68 motifs. Skipped 0 motifs. 0 conversion errors. Processing Xenopus_tropicalis (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Xenopus_tropicalis.txt > CISBP-RNA/Xenopus_tropicalis.dna_encoded.meme Converted 68 motifs. Skipped 0 motifs. 0 conversion errors. Processing Yarrowia_lipolytica (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Yarrowia_lipolytica.txt > CISBP-RNA/Yarrowia_lipolytica.dna_encoded.meme Converted 1 motifs. Skipped 0 motifs. 0 conversion errors. Processing Zea_mays (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Zea_mays.txt > CISBP-RNA/Zea_mays.dna_encoded.meme Converted 7 motifs. Skipped 0 motifs. 0 conversion errors. Processing Zygosaccharomyces_rouxii (DNA-encoded) ... Creating MEME file with command: transfac2meme -url "http://cisbp-rna.ccbr.utoronto.ca/TFreport.php?searchTF=MOTIF_AC" /Users/t.bailey/meme_projects/databases/CISBP-RNA/0.6/by_species/Zygosaccharomyces_rouxii.txt > CISBP-RNA/Zygosaccharomyces_rouxii.dna_encoded.meme Converted 4 motifs. Skipped 0 motifs. 0 conversion errors. Processing Ray2013 All Species ... Creating MEME file with command: ../Ray2013_RBP/ray2uniprobe ../Ray2013_RBP/top10align_motifs ../Ray2013_RBP/by_species/All_Species.motifs.txt | uniprobe2meme -rna -sg ../Ray2013_RBP/id_name.txt -url 'http://hugheslab.ccbr.utoronto.ca/supplementary-data/RNAcompete_eukarya' | awk '{if ($1=="MOTIF"){sub(/_[0-9]+$/, "", $2); print $1, $3, $2}else{print}}'> RNA/Ray2013_rbp_All_Species.meme Converted 244 motifs. Skipped 0 motifs. Processing Ray2013 Arabidopsis thaliana ... Creating MEME file with command: ../Ray2013_RBP/ray2uniprobe ../Ray2013_RBP/top10align_motifs ../Ray2013_RBP/by_species/Arabidopsis_thaliana.motifs.txt | uniprobe2meme -rna -sg ../Ray2013_RBP/id_name.txt -url 'http://hugheslab.ccbr.utoronto.ca/supplementary-data/RNAcompete_eukarya' | awk '{if ($1=="MOTIF"){sub(/_[0-9]+$/, "", $2); print $1, $3, $2}else{print}}'> RNA/Ray2013_rbp_Arabidopsis_thaliana.meme Converted 1 motifs. Skipped 0 motifs. Processing Ray2013 Aspergillus nidulans ... Creating MEME file with command: ../Ray2013_RBP/ray2uniprobe ../Ray2013_RBP/top10align_motifs ../Ray2013_RBP/by_species/Aspergillus_nidulans.motifs.txt | uniprobe2meme -rna -sg ../Ray2013_RBP/id_name.txt -url 'http://hugheslab.ccbr.utoronto.ca/supplementary-data/RNAcompete_eukarya' | awk '{if ($1=="MOTIF"){sub(/_[0-9]+$/, "", $2); print $1, $3, $2}else{print}}'> RNA/Ray2013_rbp_Aspergillus_nidulans.meme Converted 2 motifs. Skipped 0 motifs. Processing Ray2013 Caenorhabditis elegans ... Creating MEME file with command: ../Ray2013_RBP/ray2uniprobe ../Ray2013_RBP/top10align_motifs ../Ray2013_RBP/by_species/Caenorhabditis_elegans.motifs.txt | uniprobe2meme -rna -sg ../Ray2013_RBP/id_name.txt -url 'http://hugheslab.ccbr.utoronto.ca/supplementary-data/RNAcompete_eukarya' | awk '{if ($1=="MOTIF"){sub(/_[0-9]+$/, "", $2); print $1, $3, $2}else{print}}'> RNA/Ray2013_rbp_Caenorhabditis_elegans.meme Converted 11 motifs. Skipped 0 motifs. Processing Ray2013 Danio rerio ... Creating MEME file with command: ../Ray2013_RBP/ray2uniprobe ../Ray2013_RBP/top10align_motifs ../Ray2013_RBP/by_species/Danio_rerio.motifs.txt | uniprobe2meme -rna -sg ../Ray2013_RBP/id_name.txt -url 'http://hugheslab.ccbr.utoronto.ca/supplementary-data/RNAcompete_eukarya' | awk '{if ($1=="MOTIF"){sub(/_[0-9]+$/, "", $2); print $1, $3, $2}else{print}}'> RNA/Ray2013_rbp_Danio_rerio.meme Converted 4 motifs. Skipped 0 motifs. Processing Ray2013 Drosophila melanogaster ... Creating MEME file with command: ../Ray2013_RBP/ray2uniprobe ../Ray2013_RBP/top10align_motifs ../Ray2013_RBP/by_species/Drosophila_melanogaster.motifs.txt | uniprobe2meme -rna -sg ../Ray2013_RBP/id_name.txt -url 'http://hugheslab.ccbr.utoronto.ca/supplementary-data/RNAcompete_eukarya' | awk '{if ($1=="MOTIF"){sub(/_[0-9]+$/, "", $2); print $1, $3, $2}else{print}}'> RNA/Ray2013_rbp_Drosophila_melanogaster.meme Converted 67 motifs. Skipped 0 motifs. Processing Ray2013 Gallus gallus ... Creating MEME file with command: ../Ray2013_RBP/ray2uniprobe ../Ray2013_RBP/top10align_motifs ../Ray2013_RBP/by_species/Gallus_gallus.motifs.txt | uniprobe2meme -rna -sg ../Ray2013_RBP/id_name.txt -url 'http://hugheslab.ccbr.utoronto.ca/supplementary-data/RNAcompete_eukarya' | awk '{if ($1=="MOTIF"){sub(/_[0-9]+$/, "", $2); print $1, $3, $2}else{print}}'> RNA/Ray2013_rbp_Gallus_gallus.meme Converted 3 motifs. Skipped 0 motifs. Processing Ray2013 Homo sapiens ... Creating MEME file with command: ../Ray2013_RBP/ray2uniprobe ../Ray2013_RBP/top10align_motifs ../Ray2013_RBP/by_species/Homo_sapiens.motifs.txt | uniprobe2meme -rna -sg ../Ray2013_RBP/id_name.txt -url 'http://hugheslab.ccbr.utoronto.ca/supplementary-data/RNAcompete_eukarya' | awk '{if ($1=="MOTIF"){sub(/_[0-9]+$/, "", $2); print $1, $3, $2}else{print}}'> RNA/Ray2013_rbp_Homo_sapiens.meme Converted 102 motifs. Skipped 0 motifs. Processing Ray2013 Leishmania major ... Creating MEME file with command: ../Ray2013_RBP/ray2uniprobe ../Ray2013_RBP/top10align_motifs ../Ray2013_RBP/by_species/Leishmania_major.motifs.txt | uniprobe2meme -rna -sg ../Ray2013_RBP/id_name.txt -url 'http://hugheslab.ccbr.utoronto.ca/supplementary-data/RNAcompete_eukarya' | awk '{if ($1=="MOTIF"){sub(/_[0-9]+$/, "", $2); print $1, $3, $2}else{print}}'> RNA/Ray2013_rbp_Leishmania_major.meme Converted 4 motifs. Skipped 0 motifs. Processing Ray2013 Mus musculus ... Creating MEME file with command: ../Ray2013_RBP/ray2uniprobe ../Ray2013_RBP/top10align_motifs ../Ray2013_RBP/by_species/Mus_musculus.motifs.txt | uniprobe2meme -rna -sg ../Ray2013_RBP/id_name.txt -url 'http://hugheslab.ccbr.utoronto.ca/supplementary-data/RNAcompete_eukarya' | awk '{if ($1=="MOTIF"){sub(/_[0-9]+$/, "", $2); print $1, $3, $2}else{print}}'> RNA/Ray2013_rbp_Mus_musculus.meme Converted 4 motifs. Skipped 0 motifs. Processing Ray2013 Naegleria gruberi ... Creating MEME file with command: ../Ray2013_RBP/ray2uniprobe ../Ray2013_RBP/top10align_motifs ../Ray2013_RBP/by_species/Naegleria_gruberi.motifs.txt | uniprobe2meme -rna -sg ../Ray2013_RBP/id_name.txt -url 'http://hugheslab.ccbr.utoronto.ca/supplementary-data/RNAcompete_eukarya' | awk '{if ($1=="MOTIF"){sub(/_[0-9]+$/, "", $2); print $1, $3, $2}else{print}}'> RNA/Ray2013_rbp_Naegleria_gruberi.meme Converted 1 motifs. Skipped 0 motifs. Processing Ray2013 Nematostella vectensis ... Creating MEME file with command: ../Ray2013_RBP/ray2uniprobe ../Ray2013_RBP/top10align_motifs ../Ray2013_RBP/by_species/Nematostella_vectensis.motifs.txt | uniprobe2meme -rna -sg ../Ray2013_RBP/id_name.txt -url 'http://hugheslab.ccbr.utoronto.ca/supplementary-data/RNAcompete_eukarya' | awk '{if ($1=="MOTIF"){sub(/_[0-9]+$/, "", $2); print $1, $3, $2}else{print}}'> RNA/Ray2013_rbp_Nematostella_vectensis.meme Converted 1 motifs. Skipped 0 motifs. Processing Ray2013 Neurospora crassa ... Creating MEME file with command: ../Ray2013_RBP/ray2uniprobe ../Ray2013_RBP/top10align_motifs ../Ray2013_RBP/by_species/Neurospora_crassa.motifs.txt | uniprobe2meme -rna -sg ../Ray2013_RBP/id_name.txt -url 'http://hugheslab.ccbr.utoronto.ca/supplementary-data/RNAcompete_eukarya' | awk '{if ($1=="MOTIF"){sub(/_[0-9]+$/, "", $2); print $1, $3, $2}else{print}}'> RNA/Ray2013_rbp_Neurospora_crassa.meme Converted 2 motifs. Skipped 0 motifs. Processing Ray2013 Ostreococcus tauri ... Creating MEME file with command: ../Ray2013_RBP/ray2uniprobe ../Ray2013_RBP/top10align_motifs ../Ray2013_RBP/by_species/Ostreococcus_tauri.motifs.txt | uniprobe2meme -rna -sg ../Ray2013_RBP/id_name.txt -url 'http://hugheslab.ccbr.utoronto.ca/supplementary-data/RNAcompete_eukarya' | awk '{if ($1=="MOTIF"){sub(/_[0-9]+$/, "", $2); print $1, $3, $2}else{print}}'> RNA/Ray2013_rbp_Ostreococcus_tauri.meme Converted 2 motifs. Skipped 0 motifs. Processing Ray2013 Physcomitrella patens ... Creating MEME file with command: ../Ray2013_RBP/ray2uniprobe ../Ray2013_RBP/top10align_motifs ../Ray2013_RBP/by_species/Physcomitrella_patens.motifs.txt | uniprobe2meme -rna -sg ../Ray2013_RBP/id_name.txt -url 'http://hugheslab.ccbr.utoronto.ca/supplementary-data/RNAcompete_eukarya' | awk '{if ($1=="MOTIF"){sub(/_[0-9]+$/, "", $2); print $1, $3, $2}else{print}}'> RNA/Ray2013_rbp_Physcomitrella_patens.meme Converted 4 motifs. Skipped 0 motifs. Processing Ray2013 Phytophthora ramorum ... Creating MEME file with command: ../Ray2013_RBP/ray2uniprobe ../Ray2013_RBP/top10align_motifs ../Ray2013_RBP/by_species/Phytophthora_ramorum.motifs.txt | uniprobe2meme -rna -sg ../Ray2013_RBP/id_name.txt -url 'http://hugheslab.ccbr.utoronto.ca/supplementary-data/RNAcompete_eukarya' | awk '{if ($1=="MOTIF"){sub(/_[0-9]+$/, "", $2); print $1, $3, $2}else{print}}'> RNA/Ray2013_rbp_Phytophthora_ramorum.meme Converted 1 motifs. Skipped 0 motifs. Processing Ray2013 Plasmodium falciparum ... Creating MEME file with command: ../Ray2013_RBP/ray2uniprobe ../Ray2013_RBP/top10align_motifs ../Ray2013_RBP/by_species/Plasmodium_falciparum.motifs.txt | uniprobe2meme -rna -sg ../Ray2013_RBP/id_name.txt -url 'http://hugheslab.ccbr.utoronto.ca/supplementary-data/RNAcompete_eukarya' | awk '{if ($1=="MOTIF"){sub(/_[0-9]+$/, "", $2); print $1, $3, $2}else{print}}'> RNA/Ray2013_rbp_Plasmodium_falciparum.meme Converted 8 motifs. Skipped 0 motifs. Processing Ray2013 Rhizopus oryzae ... Creating MEME file with command: ../Ray2013_RBP/ray2uniprobe ../Ray2013_RBP/top10align_motifs ../Ray2013_RBP/by_species/Rhizopus_oryzae.motifs.txt | uniprobe2meme -rna -sg ../Ray2013_RBP/id_name.txt -url 'http://hugheslab.ccbr.utoronto.ca/supplementary-data/RNAcompete_eukarya' | awk '{if ($1=="MOTIF"){sub(/_[0-9]+$/, "", $2); print $1, $3, $2}else{print}}'> RNA/Ray2013_rbp_Rhizopus_oryzae.meme Converted 1 motifs. Skipped 0 motifs. Processing Ray2013 Saccharomyces cerevisiae ... Creating MEME file with command: ../Ray2013_RBP/ray2uniprobe ../Ray2013_RBP/top10align_motifs ../Ray2013_RBP/by_species/Saccharomyces_cerevisiae.motifs.txt | uniprobe2meme -rna -sg ../Ray2013_RBP/id_name.txt -url 'http://hugheslab.ccbr.utoronto.ca/supplementary-data/RNAcompete_eukarya' | awk '{if ($1=="MOTIF"){sub(/_[0-9]+$/, "", $2); print $1, $3, $2}else{print}}'> RNA/Ray2013_rbp_Saccharomyces_cerevisiae.meme Converted 4 motifs. Skipped 0 motifs. Processing Ray2013 Schistosoma mansoni ... Creating MEME file with command: ../Ray2013_RBP/ray2uniprobe ../Ray2013_RBP/top10align_motifs ../Ray2013_RBP/by_species/Schistosoma_mansoni.motifs.txt | uniprobe2meme -rna -sg ../Ray2013_RBP/id_name.txt -url 'http://hugheslab.ccbr.utoronto.ca/supplementary-data/RNAcompete_eukarya' | awk '{if ($1=="MOTIF"){sub(/_[0-9]+$/, "", $2); print $1, $3, $2}else{print}}'> RNA/Ray2013_rbp_Schistosoma_mansoni.meme Converted 1 motifs. Skipped 0 motifs. Processing Ray2013 Tetraodon nigroviridis ... Creating MEME file with command: ../Ray2013_RBP/ray2uniprobe ../Ray2013_RBP/top10align_motifs ../Ray2013_RBP/by_species/Tetraodon_nigroviridis.motifs.txt | uniprobe2meme -rna -sg ../Ray2013_RBP/id_name.txt -url 'http://hugheslab.ccbr.utoronto.ca/supplementary-data/RNAcompete_eukarya' | awk '{if ($1=="MOTIF"){sub(/_[0-9]+$/, "", $2); print $1, $3, $2}else{print}}'> RNA/Ray2013_rbp_Tetraodon_nigroviridis.meme Converted 2 motifs. Skipped 0 motifs. Processing Ray2013 Thalassiosira pseudonana ... Creating MEME file with command: ../Ray2013_RBP/ray2uniprobe ../Ray2013_RBP/top10align_motifs ../Ray2013_RBP/by_species/Thalassiosira_pseudonana.motifs.txt | uniprobe2meme -rna -sg ../Ray2013_RBP/id_name.txt -url 'http://hugheslab.ccbr.utoronto.ca/supplementary-data/RNAcompete_eukarya' | awk '{if ($1=="MOTIF"){sub(/_[0-9]+$/, "", $2); print $1, $3, $2}else{print}}'> RNA/Ray2013_rbp_Thalassiosira_pseudonana.meme Converted 1 motifs. Skipped 0 motifs. Processing Ray2013 Trichomonas vaginalis ... Creating MEME file with command: ../Ray2013_RBP/ray2uniprobe ../Ray2013_RBP/top10align_motifs ../Ray2013_RBP/by_species/Trichomonas_vaginalis.motifs.txt | uniprobe2meme -rna -sg ../Ray2013_RBP/id_name.txt -url 'http://hugheslab.ccbr.utoronto.ca/supplementary-data/RNAcompete_eukarya' | awk '{if ($1=="MOTIF"){sub(/_[0-9]+$/, "", $2); print $1, $3, $2}else{print}}'> RNA/Ray2013_rbp_Trichomonas_vaginalis.meme Converted 5 motifs. Skipped 0 motifs. Processing Ray2013 Trypanosoma brucei ... Creating MEME file with command: ../Ray2013_RBP/ray2uniprobe ../Ray2013_RBP/top10align_motifs ../Ray2013_RBP/by_species/Trypanosoma_brucei.motifs.txt | uniprobe2meme -rna -sg ../Ray2013_RBP/id_name.txt -url 'http://hugheslab.ccbr.utoronto.ca/supplementary-data/RNAcompete_eukarya' | awk '{if ($1=="MOTIF"){sub(/_[0-9]+$/, "", $2); print $1, $3, $2}else{print}}'> RNA/Ray2013_rbp_Trypanosoma_brucei.meme Converted 9 motifs. Skipped 0 motifs. Processing Ray2013 Xenopus tropicalis ... Creating MEME file with command: ../Ray2013_RBP/ray2uniprobe ../Ray2013_RBP/top10align_motifs ../Ray2013_RBP/by_species/Xenopus_tropicalis.motifs.txt | uniprobe2meme -rna -sg ../Ray2013_RBP/id_name.txt -url 'http://hugheslab.ccbr.utoronto.ca/supplementary-data/RNAcompete_eukarya' | awk '{if ($1=="MOTIF"){sub(/_[0-9]+$/, "", $2); print $1, $3, $2}else{print}}'> RNA/Ray2013_rbp_Xenopus_tropicalis.meme Converted 4 motifs. Skipped 0 motifs. Processing Ray2013 All Species (DNA-encoded) ... Creating MEME file with command: ../Ray2013_RBP/ray2uniprobe ../Ray2013_RBP/top10align_motifs ../Ray2013_RBP/by_species/All_Species.motifs.txt | uniprobe2meme -sg ../Ray2013_RBP/id_name.txt -url 'http://hugheslab.ccbr.utoronto.ca/supplementary-data/RNAcompete_eukarya' | awk '{if ($1=="MOTIF"){sub(/_[0-9]+$/, "", $2); print $1, $3, $2}else{print}}'> RNA/Ray2013_rbp_All_Species.dna_encoded.meme Converted 244 motifs. Skipped 0 motifs. Processing Ray2013 Arabidopsis thaliana (DNA-encoded) ... Creating MEME file with command: ../Ray2013_RBP/ray2uniprobe ../Ray2013_RBP/top10align_motifs ../Ray2013_RBP/by_species/Arabidopsis_thaliana.motifs.txt | uniprobe2meme -sg ../Ray2013_RBP/id_name.txt -url 'http://hugheslab.ccbr.utoronto.ca/supplementary-data/RNAcompete_eukarya' | awk '{if ($1=="MOTIF"){sub(/_[0-9]+$/, "", $2); print $1, $3, $2}else{print}}'> RNA/Ray2013_rbp_Arabidopsis_thaliana.dna_encoded.meme Converted 1 motifs. Skipped 0 motifs. Processing Ray2013 Aspergillus nidulans (DNA-encoded) ... Creating MEME file with command: ../Ray2013_RBP/ray2uniprobe ../Ray2013_RBP/top10align_motifs ../Ray2013_RBP/by_species/Aspergillus_nidulans.motifs.txt | uniprobe2meme -sg ../Ray2013_RBP/id_name.txt -url 'http://hugheslab.ccbr.utoronto.ca/supplementary-data/RNAcompete_eukarya' | awk '{if ($1=="MOTIF"){sub(/_[0-9]+$/, "", $2); print $1, $3, $2}else{print}}'> RNA/Ray2013_rbp_Aspergillus_nidulans.dna_encoded.meme Converted 2 motifs. Skipped 0 motifs. Processing Ray2013 Caenorhabditis elegans (DNA-encoded) ... Creating MEME file with command: ../Ray2013_RBP/ray2uniprobe ../Ray2013_RBP/top10align_motifs ../Ray2013_RBP/by_species/Caenorhabditis_elegans.motifs.txt | uniprobe2meme -sg ../Ray2013_RBP/id_name.txt -url 'http://hugheslab.ccbr.utoronto.ca/supplementary-data/RNAcompete_eukarya' | awk '{if ($1=="MOTIF"){sub(/_[0-9]+$/, "", $2); print $1, $3, $2}else{print}}'> RNA/Ray2013_rbp_Caenorhabditis_elegans.dna_encoded.meme Converted 11 motifs. Skipped 0 motifs. Processing Ray2013 Danio rerio (DNA-encoded) ... Creating MEME file with command: ../Ray2013_RBP/ray2uniprobe ../Ray2013_RBP/top10align_motifs ../Ray2013_RBP/by_species/Danio_rerio.motifs.txt | uniprobe2meme -sg ../Ray2013_RBP/id_name.txt -url 'http://hugheslab.ccbr.utoronto.ca/supplementary-data/RNAcompete_eukarya' | awk '{if ($1=="MOTIF"){sub(/_[0-9]+$/, "", $2); print $1, $3, $2}else{print}}'> RNA/Ray2013_rbp_Danio_rerio.dna_encoded.meme Converted 4 motifs. Skipped 0 motifs. Processing Ray2013 Drosophila melanogaster (DNA-encoded) ... Creating MEME file with command: ../Ray2013_RBP/ray2uniprobe ../Ray2013_RBP/top10align_motifs ../Ray2013_RBP/by_species/Drosophila_melanogaster.motifs.txt | uniprobe2meme -sg ../Ray2013_RBP/id_name.txt -url 'http://hugheslab.ccbr.utoronto.ca/supplementary-data/RNAcompete_eukarya' | awk '{if ($1=="MOTIF"){sub(/_[0-9]+$/, "", $2); print $1, $3, $2}else{print}}'> RNA/Ray2013_rbp_Drosophila_melanogaster.dna_encoded.meme Converted 67 motifs. Skipped 0 motifs. Processing Ray2013 Gallus gallus (DNA-encoded) ... Creating MEME file with command: ../Ray2013_RBP/ray2uniprobe ../Ray2013_RBP/top10align_motifs ../Ray2013_RBP/by_species/Gallus_gallus.motifs.txt | uniprobe2meme -sg ../Ray2013_RBP/id_name.txt -url 'http://hugheslab.ccbr.utoronto.ca/supplementary-data/RNAcompete_eukarya' | awk '{if ($1=="MOTIF"){sub(/_[0-9]+$/, "", $2); print $1, $3, $2}else{print}}'> RNA/Ray2013_rbp_Gallus_gallus.dna_encoded.meme Converted 3 motifs. Skipped 0 motifs. Processing Ray2013 Homo sapiens (DNA-encoded) ... Creating MEME file with command: ../Ray2013_RBP/ray2uniprobe ../Ray2013_RBP/top10align_motifs ../Ray2013_RBP/by_species/Homo_sapiens.motifs.txt | uniprobe2meme -sg ../Ray2013_RBP/id_name.txt -url 'http://hugheslab.ccbr.utoronto.ca/supplementary-data/RNAcompete_eukarya' | awk '{if ($1=="MOTIF"){sub(/_[0-9]+$/, "", $2); print $1, $3, $2}else{print}}'> RNA/Ray2013_rbp_Homo_sapiens.dna_encoded.meme Converted 102 motifs. Skipped 0 motifs. Processing Ray2013 Leishmania major (DNA-encoded) ... Creating MEME file with command: ../Ray2013_RBP/ray2uniprobe ../Ray2013_RBP/top10align_motifs ../Ray2013_RBP/by_species/Leishmania_major.motifs.txt | uniprobe2meme -sg ../Ray2013_RBP/id_name.txt -url 'http://hugheslab.ccbr.utoronto.ca/supplementary-data/RNAcompete_eukarya' | awk '{if ($1=="MOTIF"){sub(/_[0-9]+$/, "", $2); print $1, $3, $2}else{print}}'> RNA/Ray2013_rbp_Leishmania_major.dna_encoded.meme Converted 4 motifs. Skipped 0 motifs. Processing Ray2013 Mus musculus (DNA-encoded) ... Creating MEME file with command: ../Ray2013_RBP/ray2uniprobe ../Ray2013_RBP/top10align_motifs ../Ray2013_RBP/by_species/Mus_musculus.motifs.txt | uniprobe2meme -sg ../Ray2013_RBP/id_name.txt -url 'http://hugheslab.ccbr.utoronto.ca/supplementary-data/RNAcompete_eukarya' | awk '{if ($1=="MOTIF"){sub(/_[0-9]+$/, "", $2); print $1, $3, $2}else{print}}'> RNA/Ray2013_rbp_Mus_musculus.dna_encoded.meme Converted 4 motifs. Skipped 0 motifs. Processing Ray2013 Naegleria gruberi (DNA-encoded) ... Creating MEME file with command: ../Ray2013_RBP/ray2uniprobe ../Ray2013_RBP/top10align_motifs ../Ray2013_RBP/by_species/Naegleria_gruberi.motifs.txt | uniprobe2meme -sg ../Ray2013_RBP/id_name.txt -url 'http://hugheslab.ccbr.utoronto.ca/supplementary-data/RNAcompete_eukarya' | awk '{if ($1=="MOTIF"){sub(/_[0-9]+$/, "", $2); print $1, $3, $2}else{print}}'> RNA/Ray2013_rbp_Naegleria_gruberi.dna_encoded.meme Converted 1 motifs. Skipped 0 motifs. Processing Ray2013 Nematostella vectensis (DNA-encoded) ... Creating MEME file with command: ../Ray2013_RBP/ray2uniprobe ../Ray2013_RBP/top10align_motifs ../Ray2013_RBP/by_species/Nematostella_vectensis.motifs.txt | uniprobe2meme -sg ../Ray2013_RBP/id_name.txt -url 'http://hugheslab.ccbr.utoronto.ca/supplementary-data/RNAcompete_eukarya' | awk '{if ($1=="MOTIF"){sub(/_[0-9]+$/, "", $2); print $1, $3, $2}else{print}}'> RNA/Ray2013_rbp_Nematostella_vectensis.dna_encoded.meme Converted 1 motifs. Skipped 0 motifs. Processing Ray2013 Neurospora crassa (DNA-encoded) ... Creating MEME file with command: ../Ray2013_RBP/ray2uniprobe ../Ray2013_RBP/top10align_motifs ../Ray2013_RBP/by_species/Neurospora_crassa.motifs.txt | uniprobe2meme -sg ../Ray2013_RBP/id_name.txt -url 'http://hugheslab.ccbr.utoronto.ca/supplementary-data/RNAcompete_eukarya' | awk '{if ($1=="MOTIF"){sub(/_[0-9]+$/, "", $2); print $1, $3, $2}else{print}}'> RNA/Ray2013_rbp_Neurospora_crassa.dna_encoded.meme Converted 2 motifs. Skipped 0 motifs. Processing Ray2013 Ostreococcus tauri (DNA-encoded) ... Creating MEME file with command: ../Ray2013_RBP/ray2uniprobe ../Ray2013_RBP/top10align_motifs ../Ray2013_RBP/by_species/Ostreococcus_tauri.motifs.txt | uniprobe2meme -sg ../Ray2013_RBP/id_name.txt -url 'http://hugheslab.ccbr.utoronto.ca/supplementary-data/RNAcompete_eukarya' | awk '{if ($1=="MOTIF"){sub(/_[0-9]+$/, "", $2); print $1, $3, $2}else{print}}'> RNA/Ray2013_rbp_Ostreococcus_tauri.dna_encoded.meme Converted 2 motifs. Skipped 0 motifs. Processing Ray2013 Physcomitrella patens (DNA-encoded) ... Creating MEME file with command: ../Ray2013_RBP/ray2uniprobe ../Ray2013_RBP/top10align_motifs ../Ray2013_RBP/by_species/Physcomitrella_patens.motifs.txt | uniprobe2meme -sg ../Ray2013_RBP/id_name.txt -url 'http://hugheslab.ccbr.utoronto.ca/supplementary-data/RNAcompete_eukarya' | awk '{if ($1=="MOTIF"){sub(/_[0-9]+$/, "", $2); print $1, $3, $2}else{print}}'> RNA/Ray2013_rbp_Physcomitrella_patens.dna_encoded.meme Converted 4 motifs. Skipped 0 motifs. Processing Ray2013 Phytophthora ramorum (DNA-encoded) ... Creating MEME file with command: ../Ray2013_RBP/ray2uniprobe ../Ray2013_RBP/top10align_motifs ../Ray2013_RBP/by_species/Phytophthora_ramorum.motifs.txt | uniprobe2meme -sg ../Ray2013_RBP/id_name.txt -url 'http://hugheslab.ccbr.utoronto.ca/supplementary-data/RNAcompete_eukarya' | awk '{if ($1=="MOTIF"){sub(/_[0-9]+$/, "", $2); print $1, $3, $2}else{print}}'> RNA/Ray2013_rbp_Phytophthora_ramorum.dna_encoded.meme Converted 1 motifs. Skipped 0 motifs. Processing Ray2013 Plasmodium falciparum (DNA-encoded) ... Creating MEME file with command: ../Ray2013_RBP/ray2uniprobe ../Ray2013_RBP/top10align_motifs ../Ray2013_RBP/by_species/Plasmodium_falciparum.motifs.txt | uniprobe2meme -sg ../Ray2013_RBP/id_name.txt -url 'http://hugheslab.ccbr.utoronto.ca/supplementary-data/RNAcompete_eukarya' | awk '{if ($1=="MOTIF"){sub(/_[0-9]+$/, "", $2); print $1, $3, $2}else{print}}'> RNA/Ray2013_rbp_Plasmodium_falciparum.dna_encoded.meme Converted 8 motifs. Skipped 0 motifs. Processing Ray2013 Rhizopus oryzae (DNA-encoded) ... Creating MEME file with command: ../Ray2013_RBP/ray2uniprobe ../Ray2013_RBP/top10align_motifs ../Ray2013_RBP/by_species/Rhizopus_oryzae.motifs.txt | uniprobe2meme -sg ../Ray2013_RBP/id_name.txt -url 'http://hugheslab.ccbr.utoronto.ca/supplementary-data/RNAcompete_eukarya' | awk '{if ($1=="MOTIF"){sub(/_[0-9]+$/, "", $2); print $1, $3, $2}else{print}}'> RNA/Ray2013_rbp_Rhizopus_oryzae.dna_encoded.meme Converted 1 motifs. Skipped 0 motifs. Processing Ray2013 Saccharomyces cerevisiae (DNA-encoded) ... Creating MEME file with command: ../Ray2013_RBP/ray2uniprobe ../Ray2013_RBP/top10align_motifs ../Ray2013_RBP/by_species/Saccharomyces_cerevisiae.motifs.txt | uniprobe2meme -sg ../Ray2013_RBP/id_name.txt -url 'http://hugheslab.ccbr.utoronto.ca/supplementary-data/RNAcompete_eukarya' | awk '{if ($1=="MOTIF"){sub(/_[0-9]+$/, "", $2); print $1, $3, $2}else{print}}'> RNA/Ray2013_rbp_Saccharomyces_cerevisiae.dna_encoded.meme Converted 4 motifs. Skipped 0 motifs. Processing Ray2013 Schistosoma mansoni (DNA-encoded) ... Creating MEME file with command: ../Ray2013_RBP/ray2uniprobe ../Ray2013_RBP/top10align_motifs ../Ray2013_RBP/by_species/Schistosoma_mansoni.motifs.txt | uniprobe2meme -sg ../Ray2013_RBP/id_name.txt -url 'http://hugheslab.ccbr.utoronto.ca/supplementary-data/RNAcompete_eukarya' | awk '{if ($1=="MOTIF"){sub(/_[0-9]+$/, "", $2); print $1, $3, $2}else{print}}'> RNA/Ray2013_rbp_Schistosoma_mansoni.dna_encoded.meme Converted 1 motifs. Skipped 0 motifs. Processing Ray2013 Tetraodon nigroviridis (DNA-encoded) ... Creating MEME file with command: ../Ray2013_RBP/ray2uniprobe ../Ray2013_RBP/top10align_motifs ../Ray2013_RBP/by_species/Tetraodon_nigroviridis.motifs.txt | uniprobe2meme -sg ../Ray2013_RBP/id_name.txt -url 'http://hugheslab.ccbr.utoronto.ca/supplementary-data/RNAcompete_eukarya' | awk '{if ($1=="MOTIF"){sub(/_[0-9]+$/, "", $2); print $1, $3, $2}else{print}}'> RNA/Ray2013_rbp_Tetraodon_nigroviridis.dna_encoded.meme Converted 2 motifs. Skipped 0 motifs. Processing Ray2013 Thalassiosira pseudonana (DNA-encoded) ... Creating MEME file with command: ../Ray2013_RBP/ray2uniprobe ../Ray2013_RBP/top10align_motifs ../Ray2013_RBP/by_species/Thalassiosira_pseudonana.motifs.txt | uniprobe2meme -sg ../Ray2013_RBP/id_name.txt -url 'http://hugheslab.ccbr.utoronto.ca/supplementary-data/RNAcompete_eukarya' | awk '{if ($1=="MOTIF"){sub(/_[0-9]+$/, "", $2); print $1, $3, $2}else{print}}'> RNA/Ray2013_rbp_Thalassiosira_pseudonana.dna_encoded.meme Converted 1 motifs. Skipped 0 motifs. Processing Ray2013 Trichomonas vaginalis (DNA-encoded) ... Creating MEME file with command: ../Ray2013_RBP/ray2uniprobe ../Ray2013_RBP/top10align_motifs ../Ray2013_RBP/by_species/Trichomonas_vaginalis.motifs.txt | uniprobe2meme -sg ../Ray2013_RBP/id_name.txt -url 'http://hugheslab.ccbr.utoronto.ca/supplementary-data/RNAcompete_eukarya' | awk '{if ($1=="MOTIF"){sub(/_[0-9]+$/, "", $2); print $1, $3, $2}else{print}}'> RNA/Ray2013_rbp_Trichomonas_vaginalis.dna_encoded.meme Converted 5 motifs. Skipped 0 motifs. Processing Ray2013 Trypanosoma brucei (DNA-encoded) ... Creating MEME file with command: ../Ray2013_RBP/ray2uniprobe ../Ray2013_RBP/top10align_motifs ../Ray2013_RBP/by_species/Trypanosoma_brucei.motifs.txt | uniprobe2meme -sg ../Ray2013_RBP/id_name.txt -url 'http://hugheslab.ccbr.utoronto.ca/supplementary-data/RNAcompete_eukarya' | awk '{if ($1=="MOTIF"){sub(/_[0-9]+$/, "", $2); print $1, $3, $2}else{print}}'> RNA/Ray2013_rbp_Trypanosoma_brucei.dna_encoded.meme Converted 9 motifs. Skipped 0 motifs. Processing Ray2013 Xenopus tropicalis (DNA-encoded) ... Creating MEME file with command: ../Ray2013_RBP/ray2uniprobe ../Ray2013_RBP/top10align_motifs ../Ray2013_RBP/by_species/Xenopus_tropicalis.motifs.txt | uniprobe2meme -sg ../Ray2013_RBP/id_name.txt -url 'http://hugheslab.ccbr.utoronto.ca/supplementary-data/RNAcompete_eukarya' | awk '{if ($1=="MOTIF"){sub(/_[0-9]+$/, "", $2); print $1, $3, $2}else{print}}'> RNA/Ray2013_rbp_Xenopus_tropicalis.dna_encoded.meme Converted 4 motifs. Skipped 0 motifs. Processing Acacia_auriculiformis_aau ... Creating MEME file with command: awk -v sp=aau '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Acacia_auriculiformis_aau.meme Processing Acacia_mangium_amg ... Creating MEME file with command: awk -v sp=amg '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Acacia_mangium_amg.meme Processing Acyrthosiphon_pisum_api ... Creating MEME file with command: awk -v sp=api '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Acyrthosiphon_pisum_api.meme Processing Aedes_aegypti_aae ... Creating MEME file with command: awk -v sp=aae '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Aedes_aegypti_aae.meme Processing Aegilops_tauschii_ata ... Creating MEME file with command: awk -v sp=ata '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Aegilops_tauschii_ata.meme Processing Amborella_trichopoda_atr ... Creating MEME file with command: awk -v sp=atr '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Amborella_trichopoda_atr.meme Processing Amphimedon_queenslandica_aqu ... Creating MEME file with command: awk -v sp=aqu '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Amphimedon_queenslandica_aqu.meme Processing Anolis_carolinensis_aca ... Creating MEME file with command: awk -v sp=aca '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Anolis_carolinensis_aca.meme Processing Anopheles_gambiae_aga ... Creating MEME file with command: awk -v sp=aga '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Anopheles_gambiae_aga.meme Processing Apis_mellifera_ame ... Creating MEME file with command: awk -v sp=ame '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Apis_mellifera_ame.meme Processing Aquilegia_caerulea_aqc ... Creating MEME file with command: awk -v sp=aqc '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Aquilegia_caerulea_aqc.meme Processing Arabidopsis_lyrata_aly ... Creating MEME file with command: awk -v sp=aly '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Arabidopsis_lyrata_aly.meme Processing Arabidopsis_thaliana_ath ... Creating MEME file with command: awk -v sp=ath '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Arabidopsis_thaliana_ath.meme Processing Arachis_hypogaea_ahy ... Creating MEME file with command: awk -v sp=ahy '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Arachis_hypogaea_ahy.meme Processing Artibeus_jamaicensis_aja ... Creating MEME file with command: awk -v sp=aja '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Artibeus_jamaicensis_aja.meme Processing Ascaris_suum_asu ... Creating MEME file with command: awk -v sp=asu '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Ascaris_suum_asu.meme Processing Ateles_geoffroyi_age ... Creating MEME file with command: awk -v sp=age '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Ateles_geoffroyi_age.meme Processing Avicennia_marina_ama ... Creating MEME file with command: awk -v sp=ama '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Avicennia_marina_ama.meme Processing BK_polyomavirus_bkv ... Creating MEME file with command: awk -v sp=bkv '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/BK_polyomavirus_bkv.meme Processing Bandicoot_papillomatosis_bpcv1 ... Creating MEME file with command: awk -v sp=bpcv1 '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Bandicoot_papillomatosis_bpcv1.meme Processing Bandicoot_papillomatosis_bpcv2 ... Creating MEME file with command: awk -v sp=bpcv2 '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Bandicoot_papillomatosis_bpcv2.meme Processing Bombyx_mori_bmo ... Creating MEME file with command: awk -v sp=bmo '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Bombyx_mori_bmo.meme Processing Bos_taurus_bta ... Creating MEME file with command: awk -v sp=bta '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Bos_taurus_bta.meme Processing Bovine_foamy_bfv ... Creating MEME file with command: awk -v sp=bfv '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Bovine_foamy_bfv.meme Processing Bovine_herpesvirus_bhv1 ... Creating MEME file with command: awk -v sp=bhv1 '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Bovine_herpesvirus_bhv1.meme Processing Bovine_herpesvirus_bhv5 ... Creating MEME file with command: awk -v sp=bhv5 '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Bovine_herpesvirus_bhv5.meme Processing Bovine_leukemia_blv ... Creating MEME file with command: awk -v sp=blv '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Bovine_leukemia_blv.meme Processing Brachypodium_distachyon_bdi ... Creating MEME file with command: awk -v sp=bdi '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Brachypodium_distachyon_bdi.meme Processing Branchiostoma_belcheri_bbe ... Creating MEME file with command: awk -v sp=bbe '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Branchiostoma_belcheri_bbe.meme Processing Branchiostoma_floridae_bfl ... Creating MEME file with command: awk -v sp=bfl '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Branchiostoma_floridae_bfl.meme Processing Brassica_napus_bna ... Creating MEME file with command: awk -v sp=bna '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Brassica_napus_bna.meme Processing Brassica_oleracea_bol ... Creating MEME file with command: awk -v sp=bol '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Brassica_oleracea_bol.meme Processing Brassica_rapa_bra ... Creating MEME file with command: awk -v sp=bra '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Brassica_rapa_bra.meme Processing Brugia_malayi_bma ... Creating MEME file with command: awk -v sp=bma '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Brugia_malayi_bma.meme Processing Bruguiera_cylindrica_bcy ... Creating MEME file with command: awk -v sp=bcy '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Bruguiera_cylindrica_bcy.meme Processing Bruguiera_gymnorhiza_bgy ... Creating MEME file with command: awk -v sp=bgy '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Bruguiera_gymnorhiza_bgy.meme Processing Caenorhabditis_brenneri_cbn ... Creating MEME file with command: awk -v sp=cbn '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Caenorhabditis_brenneri_cbn.meme Processing Caenorhabditis_briggsae_cbr ... Creating MEME file with command: awk -v sp=cbr '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Caenorhabditis_briggsae_cbr.meme Processing Caenorhabditis_elegans_cel ... Creating MEME file with command: awk -v sp=cel '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Caenorhabditis_elegans_cel.meme Processing Caenorhabditis_remanei_crm ... Creating MEME file with command: awk -v sp=crm '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Caenorhabditis_remanei_crm.meme Processing Canis_familiaris_cfa ... Creating MEME file with command: awk -v sp=cfa '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Canis_familiaris_cfa.meme Processing Capitella_teleta_cte ... Creating MEME file with command: awk -v sp=cte '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Capitella_teleta_cte.meme Processing Capra_hircus_chi ... Creating MEME file with command: awk -v sp=chi '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Capra_hircus_chi.meme Processing Carica_papaya_cpa ... Creating MEME file with command: awk -v sp=cpa '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Carica_papaya_cpa.meme Processing Cerebratulus_lacteus_cla ... Creating MEME file with command: awk -v sp=cla '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Cerebratulus_lacteus_cla.meme Processing Chlamydomonas_reinhardtii_cre ... Creating MEME file with command: awk -v sp=cre '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Chlamydomonas_reinhardtii_cre.meme Processing Ciona_intestinalis_cin ... Creating MEME file with command: awk -v sp=cin '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Ciona_intestinalis_cin.meme Processing Ciona_savignyi_csa ... Creating MEME file with command: awk -v sp=csa '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Ciona_savignyi_csa.meme Processing Citrus_clementina_ccl ... Creating MEME file with command: awk -v sp=ccl '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Citrus_clementina_ccl.meme Processing Citrus_reticulata_crt ... Creating MEME file with command: awk -v sp=crt '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Citrus_reticulata_crt.meme Processing Citrus_sinensis_csi ... Creating MEME file with command: awk -v sp=csi '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Citrus_sinensis_csi.meme Processing Citrus_trifoliata_ctr ... Creating MEME file with command: awk -v sp=ctr '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Citrus_trifoliata_ctr.meme Processing Cricetulus_griseus_cgr ... Creating MEME file with command: awk -v sp=cgr '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Cricetulus_griseus_cgr.meme Processing Cucumis_melo_cme ... Creating MEME file with command: awk -v sp=cme '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Cucumis_melo_cme.meme Processing Culex_quinquefasciatus_cqu ... Creating MEME file with command: awk -v sp=cqu '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Culex_quinquefasciatus_cqu.meme Processing Cunninghamia_lanceolata_cln ... Creating MEME file with command: awk -v sp=cln '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Cunninghamia_lanceolata_cln.meme Processing Cynara_cardunculus_cca ... Creating MEME file with command: awk -v sp=cca '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Cynara_cardunculus_cca.meme Processing Cyprinus_carpio_ccr ... Creating MEME file with command: awk -v sp=ccr '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Cyprinus_carpio_ccr.meme Processing Danio_rerio_dre ... Creating MEME file with command: awk -v sp=dre '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Danio_rerio_dre.meme Processing Daphnia_pulex_dpu ... Creating MEME file with command: awk -v sp=dpu '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Daphnia_pulex_dpu.meme Processing Dictyostelium_discoideum_ddi ... Creating MEME file with command: awk -v sp=ddi '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Dictyostelium_discoideum_ddi.meme Processing Digitalis_purpurea_dpr ... Creating MEME file with command: awk -v sp=dpr '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Digitalis_purpurea_dpr.meme Processing Drosophila_ananassae_dan ... Creating MEME file with command: awk -v sp=dan '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Drosophila_ananassae_dan.meme Processing Drosophila_erecta_der ... Creating MEME file with command: awk -v sp=der '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Drosophila_erecta_der.meme Processing Drosophila_grimshawi_dgr ... Creating MEME file with command: awk -v sp=dgr '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Drosophila_grimshawi_dgr.meme Processing Drosophila_melanogaster_dme ... Creating MEME file with command: awk -v sp=dme '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Drosophila_melanogaster_dme.meme Processing Drosophila_mojavensis_dmo ... Creating MEME file with command: awk -v sp=dmo '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Drosophila_mojavensis_dmo.meme Processing Drosophila_persimilis_dpe ... Creating MEME file with command: awk -v sp=dpe '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Drosophila_persimilis_dpe.meme Processing Drosophila_pseudoobscura_dps ... Creating MEME file with command: awk -v sp=dps '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Drosophila_pseudoobscura_dps.meme Processing Drosophila_sechellia_dse ... Creating MEME file with command: awk -v sp=dse '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Drosophila_sechellia_dse.meme Processing Drosophila_simulans_dsi ... Creating MEME file with command: awk -v sp=dsi '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Drosophila_simulans_dsi.meme Processing Drosophila_virilis_dvi ... Creating MEME file with command: awk -v sp=dvi '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Drosophila_virilis_dvi.meme Processing Drosophila_willistoni_dwi ... Creating MEME file with command: awk -v sp=dwi '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Drosophila_willistoni_dwi.meme Processing Drosophila_yakuba_dya ... Creating MEME file with command: awk -v sp=dya '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Drosophila_yakuba_dya.meme Processing Duck_enteritis_dev ... Creating MEME file with command: awk -v sp=dev '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Duck_enteritis_dev.meme Processing Echinococcus_granulosus_egr ... Creating MEME file with command: awk -v sp=egr '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Echinococcus_granulosus_egr.meme Processing Echinococcus_multilocularis_emu ... Creating MEME file with command: awk -v sp=emu '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Echinococcus_multilocularis_emu.meme Processing Ectocarpus_siliculosus_esi ... Creating MEME file with command: awk -v sp=esi '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Ectocarpus_siliculosus_esi.meme Processing Elaeis_guineensis_egu ... Creating MEME file with command: awk -v sp=egu '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Elaeis_guineensis_egu.meme Processing Epstein_Barr_ebv ... Creating MEME file with command: awk -v sp=ebv '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Epstein_Barr_ebv.meme Processing Eptesicus_fuscus_efu ... Creating MEME file with command: awk -v sp=efu '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Eptesicus_fuscus_efu.meme Processing Equus_caballus_eca ... Creating MEME file with command: awk -v sp=eca '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Equus_caballus_eca.meme Processing Festuca_arundinacea_far ... Creating MEME file with command: awk -v sp=far '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Festuca_arundinacea_far.meme Processing Fugu_rubripes_fru ... Creating MEME file with command: awk -v sp=fru '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Fugu_rubripes_fru.meme Processing Gallus_gallus_gga ... Creating MEME file with command: awk -v sp=gga '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Gallus_gallus_gga.meme Processing Glottidia_pyramidata_gpy ... Creating MEME file with command: awk -v sp=gpy '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Glottidia_pyramidata_gpy.meme Processing Glycine_max_gma ... Creating MEME file with command: awk -v sp=gma '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Glycine_max_gma.meme Processing Glycine_soja_gso ... Creating MEME file with command: awk -v sp=gso '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Glycine_soja_gso.meme Processing Gorilla_gorilla_ggo ... Creating MEME file with command: awk -v sp=ggo '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Gorilla_gorilla_ggo.meme Processing Gossypium_arboreum_gar ... Creating MEME file with command: awk -v sp=gar '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Gossypium_arboreum_gar.meme Processing Gossypium_herbaceum_ghb ... Creating MEME file with command: awk -v sp=ghb '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Gossypium_herbaceum_ghb.meme Processing Gossypium_hirsutum_ghr ... Creating MEME file with command: awk -v sp=ghr '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Gossypium_hirsutum_ghr.meme Processing Gossypium_raimondii_gra ... Creating MEME file with command: awk -v sp=gra '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Gossypium_raimondii_gra.meme Processing Gyrodactylus_salaris_gsa ... Creating MEME file with command: awk -v sp=gsa '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Gyrodactylus_salaris_gsa.meme Processing Haemonchus_contortus_hco ... Creating MEME file with command: awk -v sp=hco '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Haemonchus_contortus_hco.meme Processing Haliotis_rufescens_hru ... Creating MEME file with command: awk -v sp=hru '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Haliotis_rufescens_hru.meme Processing Helianthus_annuus_han ... Creating MEME file with command: awk -v sp=han '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Helianthus_annuus_han.meme Processing Helianthus_argophyllus_har ... Creating MEME file with command: awk -v sp=har '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Helianthus_argophyllus_har.meme Processing Helianthus_ciliaris_hci ... Creating MEME file with command: awk -v sp=hci '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Helianthus_ciliaris_hci.meme Processing Helianthus_exilis_hex ... Creating MEME file with command: awk -v sp=hex '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Helianthus_exilis_hex.meme Processing Helianthus_paradoxus_hpa ... Creating MEME file with command: awk -v sp=hpa '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Helianthus_paradoxus_hpa.meme Processing Helianthus_petiolaris_hpe ... Creating MEME file with command: awk -v sp=hpe '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Helianthus_petiolaris_hpe.meme Processing Helianthus_tuberosus_htu ... Creating MEME file with command: awk -v sp=htu '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Helianthus_tuberosus_htu.meme Processing Heliconius_melpomene_hme ... Creating MEME file with command: awk -v sp=hme '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Heliconius_melpomene_hme.meme Processing Herpes_B_hbv ... Creating MEME file with command: awk -v sp=hbv '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Herpes_B_hbv.meme Processing Herpes_Simplex_hsv1 ... Creating MEME file with command: awk -v sp=hsv1 '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Herpes_Simplex_hsv1.meme Processing Herpes_Simplex_hsv2 ... Creating MEME file with command: awk -v sp=hsv2 '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Herpes_Simplex_hsv2.meme Processing Herpesvirus_of_hvt ... Creating MEME file with command: awk -v sp=hvt '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Herpesvirus_of_hvt.meme Processing Herpesvirus_saimiri_hvsa ... Creating MEME file with command: awk -v sp=hvsa '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Herpesvirus_saimiri_hvsa.meme Processing Hevea_brasiliensis_hbr ... Creating MEME file with command: awk -v sp=hbr '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Hevea_brasiliensis_hbr.meme Processing Hippoglossus_hippoglossus_hhi ... Creating MEME file with command: awk -v sp=hhi '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Hippoglossus_hippoglossus_hhi.meme Processing Homo_sapiens_hsa ... Creating MEME file with command: awk -v sp=hsa '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Homo_sapiens_hsa.meme Processing Hordeum_vulgare_hvu ... Creating MEME file with command: awk -v sp=hvu '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Hordeum_vulgare_hvu.meme Processing Human_cytomegalovirus_hcmv ... Creating MEME file with command: awk -v sp=hcmv '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Human_cytomegalovirus_hcmv.meme Processing Human_herpesvirus_hhv6b ... Creating MEME file with command: awk -v sp=hhv6b '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Human_herpesvirus_hhv6b.meme Processing Human_immunodeficiency_hiv1 ... Creating MEME file with command: awk -v sp=hiv1 '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Human_immunodeficiency_hiv1.meme Processing Hydra_magnipapillata_hma ... Creating MEME file with command: awk -v sp=hma '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Hydra_magnipapillata_hma.meme Processing Ictalurus_punctatus_ipu ... Creating MEME file with command: awk -v sp=ipu '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Ictalurus_punctatus_ipu.meme Processing Infectious_laryngotracheitis_iltv ... Creating MEME file with command: awk -v sp=iltv '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Infectious_laryngotracheitis_iltv.meme Processing Ixodes_scapularis_isc ... Creating MEME file with command: awk -v sp=isc '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Ixodes_scapularis_isc.meme Processing JC_polyomavirus_jcv ... Creating MEME file with command: awk -v sp=jcv '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/JC_polyomavirus_jcv.meme Processing Kaposi_sarcoma-associated_kshv ... Creating MEME file with command: awk -v sp=kshv '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Kaposi_sarcoma-associated_kshv.meme Processing Lagothrix_lagotricha_lla ... Creating MEME file with command: awk -v sp=lla '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Lagothrix_lagotricha_lla.meme Processing Lemur_catta_lca ... Creating MEME file with command: awk -v sp=lca '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Lemur_catta_lca.meme Processing Leucosolenia_complicata_lco ... Creating MEME file with command: awk -v sp=lco '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Leucosolenia_complicata_lco.meme Processing Linum_usitatissimum_lus ... Creating MEME file with command: awk -v sp=lus '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Linum_usitatissimum_lus.meme Processing Locusta_migratoria_lmi ... Creating MEME file with command: awk -v sp=lmi '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Locusta_migratoria_lmi.meme Processing Lottia_gigantea_lgi ... Creating MEME file with command: awk -v sp=lgi '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Lottia_gigantea_lgi.meme Processing Lotus_japonicus_lja ... Creating MEME file with command: awk -v sp=lja '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Lotus_japonicus_lja.meme Processing Lytechinus_variegatus_lva ... Creating MEME file with command: awk -v sp=lva '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Lytechinus_variegatus_lva.meme Processing Macaca_mulatta_mml ... Creating MEME file with command: awk -v sp=mml '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Macaca_mulatta_mml.meme Processing Macaca_nemestrina_mne ... Creating MEME file with command: awk -v sp=mne '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Macaca_nemestrina_mne.meme Processing Macropus_eugenii_meu ... Creating MEME file with command: awk -v sp=meu '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Macropus_eugenii_meu.meme Processing Malus_domestica_mdm ... Creating MEME file with command: awk -v sp=mdm '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Malus_domestica_mdm.meme Processing Manduca_sexta_mse ... Creating MEME file with command: awk -v sp=mse '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Manduca_sexta_mse.meme Processing Manihot_esculenta_mes ... Creating MEME file with command: awk -v sp=mes '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Manihot_esculenta_mes.meme Processing Mareks_disease_mdv1 ... Creating MEME file with command: awk -v sp=mdv1 '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Mareks_disease_mdv1.meme Processing Mareks_disease_mdv2 ... Creating MEME file with command: awk -v sp=mdv2 '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Mareks_disease_mdv2.meme Processing Marsupenaeus_japonicus_mja ... Creating MEME file with command: awk -v sp=mja '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Marsupenaeus_japonicus_mja.meme Processing Medicago_truncatula_mtr ... Creating MEME file with command: awk -v sp=mtr '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Medicago_truncatula_mtr.meme Processing Merkel_cell_mcv ... Creating MEME file with command: awk -v sp=mcv '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Merkel_cell_mcv.meme Processing Monodelphis_domestica_mdo ... Creating MEME file with command: awk -v sp=mdo '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Monodelphis_domestica_mdo.meme Processing Mouse_cytomegalovirus_mcmv ... Creating MEME file with command: awk -v sp=mcmv '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Mouse_cytomegalovirus_mcmv.meme Processing Mouse_gammaherpesvirus_mghv ... Creating MEME file with command: awk -v sp=mghv '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Mouse_gammaherpesvirus_mghv.meme Processing Mus_musculus_mmu ... Creating MEME file with command: awk -v sp=mmu '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Mus_musculus_mmu.meme Processing Nasonia_giraulti_ngi ... Creating MEME file with command: awk -v sp=ngi '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Nasonia_giraulti_ngi.meme Processing Nasonia_longicornis_nlo ... Creating MEME file with command: awk -v sp=nlo '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Nasonia_longicornis_nlo.meme Processing Nasonia_vitripennis_nvi ... Creating MEME file with command: awk -v sp=nvi '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Nasonia_vitripennis_nvi.meme Processing Nematostella_vectensis_nve ... Creating MEME file with command: awk -v sp=nve '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Nematostella_vectensis_nve.meme Processing Nicotiana_tabacum_nta ... Creating MEME file with command: awk -v sp=nta '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Nicotiana_tabacum_nta.meme Processing Oikopleura_dioica_odi ... Creating MEME file with command: awk -v sp=odi '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Oikopleura_dioica_odi.meme Processing Ophiophagus_hannah_oha ... Creating MEME file with command: awk -v sp=oha '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Ophiophagus_hannah_oha.meme Processing Ornithorhynchus_anatinus_oan ... Creating MEME file with command: awk -v sp=oan '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Ornithorhynchus_anatinus_oan.meme Processing Oryctolagus_cuniculus_ocu ... Creating MEME file with command: awk -v sp=ocu '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Oryctolagus_cuniculus_ocu.meme Processing Oryza_sativa_osa ... Creating MEME file with command: awk -v sp=osa '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Oryza_sativa_osa.meme Processing Oryzias_latipes_ola ... Creating MEME file with command: awk -v sp=ola '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Oryzias_latipes_ola.meme Processing Ovis_aries_oar ... Creating MEME file with command: awk -v sp=oar '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Ovis_aries_oar.meme Processing Pan_paniscus_ppa ... Creating MEME file with command: awk -v sp=ppa '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Pan_paniscus_ppa.meme Processing Pan_troglodytes_ptr ... Creating MEME file with command: awk -v sp=ptr '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Pan_troglodytes_ptr.meme Processing Panagrellus_redivivus_prd ... Creating MEME file with command: awk -v sp=prd '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Panagrellus_redivivus_prd.meme Processing Panax_ginseng_pgi ... Creating MEME file with command: awk -v sp=pgi '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Panax_ginseng_pgi.meme Processing Paralichthys_olivaceus_pol ... Creating MEME file with command: awk -v sp=pol '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Paralichthys_olivaceus_pol.meme Processing Patiria_miniata_pmi ... Creating MEME file with command: awk -v sp=pmi '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Patiria_miniata_pmi.meme Processing Petromyzon_marinus_pma ... Creating MEME file with command: awk -v sp=pma '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Petromyzon_marinus_pma.meme Processing Phaeodactylum_tricornutum_pti ... Creating MEME file with command: awk -v sp=pti '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Phaeodactylum_tricornutum_pti.meme Processing Phaseolus_vulgaris_pvu ... Creating MEME file with command: awk -v sp=pvu '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Phaseolus_vulgaris_pvu.meme Processing Physcomitrella_patens_ppt ... Creating MEME file with command: awk -v sp=ppt '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Physcomitrella_patens_ppt.meme Processing Phytophthora_infestans_pin ... Creating MEME file with command: awk -v sp=pin '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Phytophthora_infestans_pin.meme Processing Phytophthora_ramorum_pra ... Creating MEME file with command: awk -v sp=pra '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Phytophthora_ramorum_pra.meme Processing Phytophthora_sojae_psj ... Creating MEME file with command: awk -v sp=psj '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Phytophthora_sojae_psj.meme Processing Picea_abies_pab ... Creating MEME file with command: awk -v sp=pab '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Picea_abies_pab.meme Processing Pinus_densata_pde ... Creating MEME file with command: awk -v sp=pde '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Pinus_densata_pde.meme Processing Pinus_taeda_pta ... Creating MEME file with command: awk -v sp=pta '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Pinus_taeda_pta.meme Processing Plutella_xylostella_pxy ... Creating MEME file with command: awk -v sp=pxy '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Plutella_xylostella_pxy.meme Processing Pongo_pygmaeus_ppy ... Creating MEME file with command: awk -v sp=ppy '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Pongo_pygmaeus_ppy.meme Processing Populus_euphratica_peu ... Creating MEME file with command: awk -v sp=peu '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Populus_euphratica_peu.meme Processing Populus_trichocarpa_ptc ... Creating MEME file with command: awk -v sp=ptc '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Populus_trichocarpa_ptc.meme Processing Pristionchus_pacificus_ppc ... Creating MEME file with command: awk -v sp=ppc '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Pristionchus_pacificus_ppc.meme Processing Prunus_persica_ppe ... Creating MEME file with command: awk -v sp=ppe '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Prunus_persica_ppe.meme Processing Pseudorabies_virus_prv ... Creating MEME file with command: awk -v sp=prv '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Pseudorabies_virus_prv.meme Processing Pygathrix_bieti_pbi ... Creating MEME file with command: awk -v sp=pbi '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Pygathrix_bieti_pbi.meme Processing Rattus_norvegicus_rno ... Creating MEME file with command: awk -v sp=rno '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Rattus_norvegicus_rno.meme Processing Rehmannia_glutinosa_rgl ... Creating MEME file with command: awk -v sp=rgl '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Rehmannia_glutinosa_rgl.meme Processing Rhesus_lymphocryptovirus_rlcv ... Creating MEME file with command: awk -v sp=rlcv '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Rhesus_lymphocryptovirus_rlcv.meme Processing Rhesus_monkey_rrv ... Creating MEME file with command: awk -v sp=rrv '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Rhesus_monkey_rrv.meme Processing Rhipicephalus_microplus_rmi ... Creating MEME file with command: awk -v sp=rmi '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Rhipicephalus_microplus_rmi.meme Processing Ricinus_communis_rco ... Creating MEME file with command: awk -v sp=rco '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Ricinus_communis_rco.meme Processing Saccharum_officinarum_sof ... Creating MEME file with command: awk -v sp=sof '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Saccharum_officinarum_sof.meme Processing Saccharum_sp._ssp ... Creating MEME file with command: awk -v sp=ssp '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Saccharum_sp._ssp.meme Processing Saccoglossus_kowalevskii_sko ... Creating MEME file with command: awk -v sp=sko '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Saccoglossus_kowalevskii_sko.meme Processing Saguinus_labiatus_sla ... Creating MEME file with command: awk -v sp=sla '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Saguinus_labiatus_sla.meme Processing Salmo_salar_ssa ... Creating MEME file with command: awk -v sp=ssa '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Salmo_salar_ssa.meme Processing Salvia_sclarea_ssl ... Creating MEME file with command: awk -v sp=ssl '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Salvia_sclarea_ssl.meme Processing Sarcophilus_harrisii_sha ... Creating MEME file with command: awk -v sp=sha '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Sarcophilus_harrisii_sha.meme Processing Schistosoma_japonicum_sja ... Creating MEME file with command: awk -v sp=sja '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Schistosoma_japonicum_sja.meme Processing Schistosoma_mansoni_sma ... Creating MEME file with command: awk -v sp=sma '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Schistosoma_mansoni_sma.meme Processing Schmidtea_mediterranea_sme ... Creating MEME file with command: awk -v sp=sme '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Schmidtea_mediterranea_sme.meme Processing Selaginella_moellendorffii_smo ... Creating MEME file with command: awk -v sp=smo '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Selaginella_moellendorffii_smo.meme Processing Simian_virus_sv40 ... Creating MEME file with command: awk -v sp=sv40 '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Simian_virus_sv40.meme Processing Solanum_lycopersicum_sly ... Creating MEME file with command: awk -v sp=sly '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Solanum_lycopersicum_sly.meme Processing Solanum_tuberosum_stu ... Creating MEME file with command: awk -v sp=stu '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Solanum_tuberosum_stu.meme Processing Sorghum_bicolor_sbi ... Creating MEME file with command: awk -v sp=sbi '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Sorghum_bicolor_sbi.meme Processing Strigamia_maritima_smr ... Creating MEME file with command: awk -v sp=smr '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Strigamia_maritima_smr.meme Processing Strongylocentrotus_purpuratus_spu ... Creating MEME file with command: awk -v sp=spu '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Strongylocentrotus_purpuratus_spu.meme Processing Strongyloides_ratti_str ... Creating MEME file with command: awk -v sp=str '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Strongyloides_ratti_str.meme Processing Sus_scrofa_ssc ... Creating MEME file with command: awk -v sp=ssc '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Sus_scrofa_ssc.meme Processing Sycon_ciliatum_sci ... Creating MEME file with command: awk -v sp=sci '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Sycon_ciliatum_sci.meme Processing Symphalangus_syndactylus_ssy ... Creating MEME file with command: awk -v sp=ssy '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Symphalangus_syndactylus_ssy.meme Processing Taeniopygia_guttata_tgu ... Creating MEME file with command: awk -v sp=tgu '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Taeniopygia_guttata_tgu.meme Processing Terebratulina_retusa_tre ... Creating MEME file with command: awk -v sp=tre '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Terebratulina_retusa_tre.meme Processing Tetranychus_urticae_tur ... Creating MEME file with command: awk -v sp=tur '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Tetranychus_urticae_tur.meme Processing Tetraodon_nigroviridis_tni ... Creating MEME file with command: awk -v sp=tni '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Tetraodon_nigroviridis_tni.meme Processing Theobroma_cacao_tcc ... Creating MEME file with command: awk -v sp=tcc '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Theobroma_cacao_tcc.meme Processing Tribolium_castaneum_tca ... Creating MEME file with command: awk -v sp=tca '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Tribolium_castaneum_tca.meme Processing Triticum_aestivum_tae ... Creating MEME file with command: awk -v sp=tae '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Triticum_aestivum_tae.meme Processing Triticum_turgidum_ttu ... Creating MEME file with command: awk -v sp=ttu '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Triticum_turgidum_ttu.meme Processing Tupaia_chinensis_tch ... Creating MEME file with command: awk -v sp=tch '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Tupaia_chinensis_tch.meme Processing Vigna_unguiculata_vun ... Creating MEME file with command: awk -v sp=vun '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Vigna_unguiculata_vun.meme Processing Vitis_vinifera_vvi ... Creating MEME file with command: awk -v sp=vvi '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Vitis_vinifera_vvi.meme Processing Xenopus_laevis_xla ... Creating MEME file with command: awk -v sp=xla '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Xenopus_laevis_xla.meme Processing Xenopus_tropicalis_xtr ... Creating MEME file with command: awk -v sp=xtr '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Xenopus_tropicalis_xtr.meme Processing Xenoturbella_bocki_xbo ... Creating MEME file with command: awk -v sp=xbo '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Xenoturbella_bocki_xbo.meme Processing Zea_mays_zma ... Creating MEME file with command: awk -v sp=zma '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -rna -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Zea_mays_zma.meme Processing Acacia_auriculiformis_aau (DNA-encoded) ... Creating MEME file with command: awk -v sp=aau '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Acacia_auriculiformis_aau.dna_encoded.meme Processing Acacia_mangium_amg (DNA-encoded) ... Creating MEME file with command: awk -v sp=amg '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Acacia_mangium_amg.dna_encoded.meme Processing Acyrthosiphon_pisum_api (DNA-encoded) ... Creating MEME file with command: awk -v sp=api '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Acyrthosiphon_pisum_api.dna_encoded.meme Processing Aedes_aegypti_aae (DNA-encoded) ... Creating MEME file with command: awk -v sp=aae '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Aedes_aegypti_aae.dna_encoded.meme Processing Aegilops_tauschii_ata (DNA-encoded) ... Creating MEME file with command: awk -v sp=ata '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Aegilops_tauschii_ata.dna_encoded.meme Processing Amborella_trichopoda_atr (DNA-encoded) ... Creating MEME file with command: awk -v sp=atr '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Amborella_trichopoda_atr.dna_encoded.meme Processing Amphimedon_queenslandica_aqu (DNA-encoded) ... Creating MEME file with command: awk -v sp=aqu '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Amphimedon_queenslandica_aqu.dna_encoded.meme Processing Anolis_carolinensis_aca (DNA-encoded) ... Creating MEME file with command: awk -v sp=aca '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Anolis_carolinensis_aca.dna_encoded.meme Processing Anopheles_gambiae_aga (DNA-encoded) ... Creating MEME file with command: awk -v sp=aga '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Anopheles_gambiae_aga.dna_encoded.meme Processing Apis_mellifera_ame (DNA-encoded) ... Creating MEME file with command: awk -v sp=ame '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Apis_mellifera_ame.dna_encoded.meme Processing Aquilegia_caerulea_aqc (DNA-encoded) ... Creating MEME file with command: awk -v sp=aqc '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Aquilegia_caerulea_aqc.dna_encoded.meme Processing Arabidopsis_lyrata_aly (DNA-encoded) ... Creating MEME file with command: awk -v sp=aly '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Arabidopsis_lyrata_aly.dna_encoded.meme Processing Arabidopsis_thaliana_ath (DNA-encoded) ... Creating MEME file with command: awk -v sp=ath '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Arabidopsis_thaliana_ath.dna_encoded.meme Processing Arachis_hypogaea_ahy (DNA-encoded) ... Creating MEME file with command: awk -v sp=ahy '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Arachis_hypogaea_ahy.dna_encoded.meme Processing Artibeus_jamaicensis_aja (DNA-encoded) ... Creating MEME file with command: awk -v sp=aja '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Artibeus_jamaicensis_aja.dna_encoded.meme Processing Ascaris_suum_asu (DNA-encoded) ... Creating MEME file with command: awk -v sp=asu '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Ascaris_suum_asu.dna_encoded.meme Processing Ateles_geoffroyi_age (DNA-encoded) ... Creating MEME file with command: awk -v sp=age '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Ateles_geoffroyi_age.dna_encoded.meme Processing Avicennia_marina_ama (DNA-encoded) ... Creating MEME file with command: awk -v sp=ama '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Avicennia_marina_ama.dna_encoded.meme Processing BK_polyomavirus_bkv (DNA-encoded) ... Creating MEME file with command: awk -v sp=bkv '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/BK_polyomavirus_bkv.dna_encoded.meme Processing Bandicoot_papillomatosis_bpcv1 (DNA-encoded) ... Creating MEME file with command: awk -v sp=bpcv1 '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Bandicoot_papillomatosis_bpcv1.dna_encoded.meme Processing Bandicoot_papillomatosis_bpcv2 (DNA-encoded) ... Creating MEME file with command: awk -v sp=bpcv2 '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Bandicoot_papillomatosis_bpcv2.dna_encoded.meme Processing Bombyx_mori_bmo (DNA-encoded) ... Creating MEME file with command: awk -v sp=bmo '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Bombyx_mori_bmo.dna_encoded.meme Processing Bos_taurus_bta (DNA-encoded) ... Creating MEME file with command: awk -v sp=bta '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Bos_taurus_bta.dna_encoded.meme Processing Bovine_foamy_bfv (DNA-encoded) ... Creating MEME file with command: awk -v sp=bfv '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Bovine_foamy_bfv.dna_encoded.meme Processing Bovine_herpesvirus_bhv1 (DNA-encoded) ... Creating MEME file with command: awk -v sp=bhv1 '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Bovine_herpesvirus_bhv1.dna_encoded.meme Processing Bovine_herpesvirus_bhv5 (DNA-encoded) ... Creating MEME file with command: awk -v sp=bhv5 '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Bovine_herpesvirus_bhv5.dna_encoded.meme Processing Bovine_leukemia_blv (DNA-encoded) ... Creating MEME file with command: awk -v sp=blv '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Bovine_leukemia_blv.dna_encoded.meme Processing Brachypodium_distachyon_bdi (DNA-encoded) ... Creating MEME file with command: awk -v sp=bdi '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Brachypodium_distachyon_bdi.dna_encoded.meme Processing Branchiostoma_belcheri_bbe (DNA-encoded) ... Creating MEME file with command: awk -v sp=bbe '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Branchiostoma_belcheri_bbe.dna_encoded.meme Processing Branchiostoma_floridae_bfl (DNA-encoded) ... Creating MEME file with command: awk -v sp=bfl '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Branchiostoma_floridae_bfl.dna_encoded.meme Processing Brassica_napus_bna (DNA-encoded) ... Creating MEME file with command: awk -v sp=bna '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Brassica_napus_bna.dna_encoded.meme Processing Brassica_oleracea_bol (DNA-encoded) ... Creating MEME file with command: awk -v sp=bol '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Brassica_oleracea_bol.dna_encoded.meme Processing Brassica_rapa_bra (DNA-encoded) ... Creating MEME file with command: awk -v sp=bra '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Brassica_rapa_bra.dna_encoded.meme Processing Brugia_malayi_bma (DNA-encoded) ... Creating MEME file with command: awk -v sp=bma '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Brugia_malayi_bma.dna_encoded.meme Processing Bruguiera_cylindrica_bcy (DNA-encoded) ... Creating MEME file with command: awk -v sp=bcy '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Bruguiera_cylindrica_bcy.dna_encoded.meme Processing Bruguiera_gymnorhiza_bgy (DNA-encoded) ... Creating MEME file with command: awk -v sp=bgy '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Bruguiera_gymnorhiza_bgy.dna_encoded.meme Processing Caenorhabditis_brenneri_cbn (DNA-encoded) ... Creating MEME file with command: awk -v sp=cbn '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Caenorhabditis_brenneri_cbn.dna_encoded.meme Processing Caenorhabditis_briggsae_cbr (DNA-encoded) ... Creating MEME file with command: awk -v sp=cbr '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Caenorhabditis_briggsae_cbr.dna_encoded.meme Processing Caenorhabditis_elegans_cel (DNA-encoded) ... Creating MEME file with command: awk -v sp=cel '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Caenorhabditis_elegans_cel.dna_encoded.meme Processing Caenorhabditis_remanei_crm (DNA-encoded) ... Creating MEME file with command: awk -v sp=crm '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Caenorhabditis_remanei_crm.dna_encoded.meme Processing Canis_familiaris_cfa (DNA-encoded) ... Creating MEME file with command: awk -v sp=cfa '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Canis_familiaris_cfa.dna_encoded.meme Processing Capitella_teleta_cte (DNA-encoded) ... Creating MEME file with command: awk -v sp=cte '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Capitella_teleta_cte.dna_encoded.meme Processing Capra_hircus_chi (DNA-encoded) ... Creating MEME file with command: awk -v sp=chi '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Capra_hircus_chi.dna_encoded.meme Processing Carica_papaya_cpa (DNA-encoded) ... Creating MEME file with command: awk -v sp=cpa '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Carica_papaya_cpa.dna_encoded.meme Processing Cerebratulus_lacteus_cla (DNA-encoded) ... Creating MEME file with command: awk -v sp=cla '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Cerebratulus_lacteus_cla.dna_encoded.meme Processing Chlamydomonas_reinhardtii_cre (DNA-encoded) ... Creating MEME file with command: awk -v sp=cre '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Chlamydomonas_reinhardtii_cre.dna_encoded.meme Processing Ciona_intestinalis_cin (DNA-encoded) ... Creating MEME file with command: awk -v sp=cin '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Ciona_intestinalis_cin.dna_encoded.meme Processing Ciona_savignyi_csa (DNA-encoded) ... Creating MEME file with command: awk -v sp=csa '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Ciona_savignyi_csa.dna_encoded.meme Processing Citrus_clementina_ccl (DNA-encoded) ... Creating MEME file with command: awk -v sp=ccl '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Citrus_clementina_ccl.dna_encoded.meme Processing Citrus_reticulata_crt (DNA-encoded) ... Creating MEME file with command: awk -v sp=crt '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Citrus_reticulata_crt.dna_encoded.meme Processing Citrus_sinensis_csi (DNA-encoded) ... Creating MEME file with command: awk -v sp=csi '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Citrus_sinensis_csi.dna_encoded.meme Processing Citrus_trifoliata_ctr (DNA-encoded) ... Creating MEME file with command: awk -v sp=ctr '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Citrus_trifoliata_ctr.dna_encoded.meme Processing Cricetulus_griseus_cgr (DNA-encoded) ... Creating MEME file with command: awk -v sp=cgr '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Cricetulus_griseus_cgr.dna_encoded.meme Processing Cucumis_melo_cme (DNA-encoded) ... Creating MEME file with command: awk -v sp=cme '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Cucumis_melo_cme.dna_encoded.meme Processing Culex_quinquefasciatus_cqu (DNA-encoded) ... Creating MEME file with command: awk -v sp=cqu '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Culex_quinquefasciatus_cqu.dna_encoded.meme Processing Cunninghamia_lanceolata_cln (DNA-encoded) ... Creating MEME file with command: awk -v sp=cln '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Cunninghamia_lanceolata_cln.dna_encoded.meme Processing Cynara_cardunculus_cca (DNA-encoded) ... Creating MEME file with command: awk -v sp=cca '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Cynara_cardunculus_cca.dna_encoded.meme Processing Cyprinus_carpio_ccr (DNA-encoded) ... Creating MEME file with command: awk -v sp=ccr '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Cyprinus_carpio_ccr.dna_encoded.meme Processing Danio_rerio_dre (DNA-encoded) ... Creating MEME file with command: awk -v sp=dre '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Danio_rerio_dre.dna_encoded.meme Processing Daphnia_pulex_dpu (DNA-encoded) ... Creating MEME file with command: awk -v sp=dpu '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Daphnia_pulex_dpu.dna_encoded.meme Processing Dictyostelium_discoideum_ddi (DNA-encoded) ... Creating MEME file with command: awk -v sp=ddi '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Dictyostelium_discoideum_ddi.dna_encoded.meme Processing Digitalis_purpurea_dpr (DNA-encoded) ... Creating MEME file with command: awk -v sp=dpr '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Digitalis_purpurea_dpr.dna_encoded.meme Processing Drosophila_ananassae_dan (DNA-encoded) ... Creating MEME file with command: awk -v sp=dan '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Drosophila_ananassae_dan.dna_encoded.meme Processing Drosophila_erecta_der (DNA-encoded) ... Creating MEME file with command: awk -v sp=der '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Drosophila_erecta_der.dna_encoded.meme Processing Drosophila_grimshawi_dgr (DNA-encoded) ... Creating MEME file with command: awk -v sp=dgr '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Drosophila_grimshawi_dgr.dna_encoded.meme Processing Drosophila_melanogaster_dme (DNA-encoded) ... Creating MEME file with command: awk -v sp=dme '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Drosophila_melanogaster_dme.dna_encoded.meme Processing Drosophila_mojavensis_dmo (DNA-encoded) ... Creating MEME file with command: awk -v sp=dmo '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Drosophila_mojavensis_dmo.dna_encoded.meme Processing Drosophila_persimilis_dpe (DNA-encoded) ... Creating MEME file with command: awk -v sp=dpe '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Drosophila_persimilis_dpe.dna_encoded.meme Processing Drosophila_pseudoobscura_dps (DNA-encoded) ... Creating MEME file with command: awk -v sp=dps '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Drosophila_pseudoobscura_dps.dna_encoded.meme Processing Drosophila_sechellia_dse (DNA-encoded) ... Creating MEME file with command: awk -v sp=dse '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Drosophila_sechellia_dse.dna_encoded.meme Processing Drosophila_simulans_dsi (DNA-encoded) ... Creating MEME file with command: awk -v sp=dsi '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Drosophila_simulans_dsi.dna_encoded.meme Processing Drosophila_virilis_dvi (DNA-encoded) ... Creating MEME file with command: awk -v sp=dvi '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Drosophila_virilis_dvi.dna_encoded.meme Processing Drosophila_willistoni_dwi (DNA-encoded) ... Creating MEME file with command: awk -v sp=dwi '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Drosophila_willistoni_dwi.dna_encoded.meme Processing Drosophila_yakuba_dya (DNA-encoded) ... Creating MEME file with command: awk -v sp=dya '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Drosophila_yakuba_dya.dna_encoded.meme Processing Duck_enteritis_dev (DNA-encoded) ... Creating MEME file with command: awk -v sp=dev '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Duck_enteritis_dev.dna_encoded.meme Processing Echinococcus_granulosus_egr (DNA-encoded) ... Creating MEME file with command: awk -v sp=egr '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Echinococcus_granulosus_egr.dna_encoded.meme Processing Echinococcus_multilocularis_emu (DNA-encoded) ... Creating MEME file with command: awk -v sp=emu '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Echinococcus_multilocularis_emu.dna_encoded.meme Processing Ectocarpus_siliculosus_esi (DNA-encoded) ... Creating MEME file with command: awk -v sp=esi '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Ectocarpus_siliculosus_esi.dna_encoded.meme Processing Elaeis_guineensis_egu (DNA-encoded) ... Creating MEME file with command: awk -v sp=egu '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Elaeis_guineensis_egu.dna_encoded.meme Processing Epstein_Barr_ebv (DNA-encoded) ... Creating MEME file with command: awk -v sp=ebv '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Epstein_Barr_ebv.dna_encoded.meme Processing Eptesicus_fuscus_efu (DNA-encoded) ... Creating MEME file with command: awk -v sp=efu '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Eptesicus_fuscus_efu.dna_encoded.meme Processing Equus_caballus_eca (DNA-encoded) ... Creating MEME file with command: awk -v sp=eca '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Equus_caballus_eca.dna_encoded.meme Processing Festuca_arundinacea_far (DNA-encoded) ... Creating MEME file with command: awk -v sp=far '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Festuca_arundinacea_far.dna_encoded.meme Processing Fugu_rubripes_fru (DNA-encoded) ... Creating MEME file with command: awk -v sp=fru '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Fugu_rubripes_fru.dna_encoded.meme Processing Gallus_gallus_gga (DNA-encoded) ... Creating MEME file with command: awk -v sp=gga '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Gallus_gallus_gga.dna_encoded.meme Processing Glottidia_pyramidata_gpy (DNA-encoded) ... Creating MEME file with command: awk -v sp=gpy '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Glottidia_pyramidata_gpy.dna_encoded.meme Processing Glycine_max_gma (DNA-encoded) ... Creating MEME file with command: awk -v sp=gma '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Glycine_max_gma.dna_encoded.meme Processing Glycine_soja_gso (DNA-encoded) ... Creating MEME file with command: awk -v sp=gso '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Glycine_soja_gso.dna_encoded.meme Processing Gorilla_gorilla_ggo (DNA-encoded) ... Creating MEME file with command: awk -v sp=ggo '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Gorilla_gorilla_ggo.dna_encoded.meme Processing Gossypium_arboreum_gar (DNA-encoded) ... Creating MEME file with command: awk -v sp=gar '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Gossypium_arboreum_gar.dna_encoded.meme Processing Gossypium_herbaceum_ghb (DNA-encoded) ... Creating MEME file with command: awk -v sp=ghb '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Gossypium_herbaceum_ghb.dna_encoded.meme Processing Gossypium_hirsutum_ghr (DNA-encoded) ... Creating MEME file with command: awk -v sp=ghr '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Gossypium_hirsutum_ghr.dna_encoded.meme Processing Gossypium_raimondii_gra (DNA-encoded) ... Creating MEME file with command: awk -v sp=gra '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Gossypium_raimondii_gra.dna_encoded.meme Processing Gyrodactylus_salaris_gsa (DNA-encoded) ... Creating MEME file with command: awk -v sp=gsa '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Gyrodactylus_salaris_gsa.dna_encoded.meme Processing Haemonchus_contortus_hco (DNA-encoded) ... Creating MEME file with command: awk -v sp=hco '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Haemonchus_contortus_hco.dna_encoded.meme Processing Haliotis_rufescens_hru (DNA-encoded) ... Creating MEME file with command: awk -v sp=hru '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Haliotis_rufescens_hru.dna_encoded.meme Processing Helianthus_annuus_han (DNA-encoded) ... Creating MEME file with command: awk -v sp=han '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Helianthus_annuus_han.dna_encoded.meme Processing Helianthus_argophyllus_har (DNA-encoded) ... Creating MEME file with command: awk -v sp=har '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Helianthus_argophyllus_har.dna_encoded.meme Processing Helianthus_ciliaris_hci (DNA-encoded) ... Creating MEME file with command: awk -v sp=hci '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Helianthus_ciliaris_hci.dna_encoded.meme Processing Helianthus_exilis_hex (DNA-encoded) ... Creating MEME file with command: awk -v sp=hex '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Helianthus_exilis_hex.dna_encoded.meme Processing Helianthus_paradoxus_hpa (DNA-encoded) ... Creating MEME file with command: awk -v sp=hpa '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Helianthus_paradoxus_hpa.dna_encoded.meme Processing Helianthus_petiolaris_hpe (DNA-encoded) ... Creating MEME file with command: awk -v sp=hpe '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Helianthus_petiolaris_hpe.dna_encoded.meme Processing Helianthus_tuberosus_htu (DNA-encoded) ... Creating MEME file with command: awk -v sp=htu '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Helianthus_tuberosus_htu.dna_encoded.meme Processing Heliconius_melpomene_hme (DNA-encoded) ... Creating MEME file with command: awk -v sp=hme '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Heliconius_melpomene_hme.dna_encoded.meme Processing Herpes_B_hbv (DNA-encoded) ... Creating MEME file with command: awk -v sp=hbv '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Herpes_B_hbv.dna_encoded.meme Processing Herpes_Simplex_hsv1 (DNA-encoded) ... Creating MEME file with command: awk -v sp=hsv1 '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Herpes_Simplex_hsv1.dna_encoded.meme Processing Herpes_Simplex_hsv2 (DNA-encoded) ... Creating MEME file with command: awk -v sp=hsv2 '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Herpes_Simplex_hsv2.dna_encoded.meme Processing Herpesvirus_of_hvt (DNA-encoded) ... Creating MEME file with command: awk -v sp=hvt '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Herpesvirus_of_hvt.dna_encoded.meme Processing Herpesvirus_saimiri_hvsa (DNA-encoded) ... Creating MEME file with command: awk -v sp=hvsa '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Herpesvirus_saimiri_hvsa.dna_encoded.meme Processing Hevea_brasiliensis_hbr (DNA-encoded) ... Creating MEME file with command: awk -v sp=hbr '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Hevea_brasiliensis_hbr.dna_encoded.meme Processing Hippoglossus_hippoglossus_hhi (DNA-encoded) ... Creating MEME file with command: awk -v sp=hhi '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Hippoglossus_hippoglossus_hhi.dna_encoded.meme Processing Homo_sapiens_hsa (DNA-encoded) ... Creating MEME file with command: awk -v sp=hsa '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Homo_sapiens_hsa.dna_encoded.meme Processing Hordeum_vulgare_hvu (DNA-encoded) ... Creating MEME file with command: awk -v sp=hvu '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Hordeum_vulgare_hvu.dna_encoded.meme Processing Human_cytomegalovirus_hcmv (DNA-encoded) ... Creating MEME file with command: awk -v sp=hcmv '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Human_cytomegalovirus_hcmv.dna_encoded.meme Processing Human_herpesvirus_hhv6b (DNA-encoded) ... Creating MEME file with command: awk -v sp=hhv6b '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Human_herpesvirus_hhv6b.dna_encoded.meme Processing Human_immunodeficiency_hiv1 (DNA-encoded) ... Creating MEME file with command: awk -v sp=hiv1 '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Human_immunodeficiency_hiv1.dna_encoded.meme Processing Hydra_magnipapillata_hma (DNA-encoded) ... Creating MEME file with command: awk -v sp=hma '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Hydra_magnipapillata_hma.dna_encoded.meme Processing Ictalurus_punctatus_ipu (DNA-encoded) ... Creating MEME file with command: awk -v sp=ipu '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Ictalurus_punctatus_ipu.dna_encoded.meme Processing Infectious_laryngotracheitis_iltv (DNA-encoded) ... Creating MEME file with command: awk -v sp=iltv '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Infectious_laryngotracheitis_iltv.dna_encoded.meme Processing Ixodes_scapularis_isc (DNA-encoded) ... Creating MEME file with command: awk -v sp=isc '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Ixodes_scapularis_isc.dna_encoded.meme Processing JC_polyomavirus_jcv (DNA-encoded) ... Creating MEME file with command: awk -v sp=jcv '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/JC_polyomavirus_jcv.dna_encoded.meme Processing Kaposi_sarcoma-associated_kshv (DNA-encoded) ... Creating MEME file with command: awk -v sp=kshv '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Kaposi_sarcoma-associated_kshv.dna_encoded.meme Processing Lagothrix_lagotricha_lla (DNA-encoded) ... Creating MEME file with command: awk -v sp=lla '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Lagothrix_lagotricha_lla.dna_encoded.meme Processing Lemur_catta_lca (DNA-encoded) ... Creating MEME file with command: awk -v sp=lca '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Lemur_catta_lca.dna_encoded.meme Processing Leucosolenia_complicata_lco (DNA-encoded) ... Creating MEME file with command: awk -v sp=lco '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Leucosolenia_complicata_lco.dna_encoded.meme Processing Linum_usitatissimum_lus (DNA-encoded) ... Creating MEME file with command: awk -v sp=lus '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Linum_usitatissimum_lus.dna_encoded.meme Processing Locusta_migratoria_lmi (DNA-encoded) ... Creating MEME file with command: awk -v sp=lmi '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Locusta_migratoria_lmi.dna_encoded.meme Processing Lottia_gigantea_lgi (DNA-encoded) ... Creating MEME file with command: awk -v sp=lgi '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Lottia_gigantea_lgi.dna_encoded.meme Processing Lotus_japonicus_lja (DNA-encoded) ... Creating MEME file with command: awk -v sp=lja '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Lotus_japonicus_lja.dna_encoded.meme Processing Lytechinus_variegatus_lva (DNA-encoded) ... Creating MEME file with command: awk -v sp=lva '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Lytechinus_variegatus_lva.dna_encoded.meme Processing Macaca_mulatta_mml (DNA-encoded) ... Creating MEME file with command: awk -v sp=mml '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Macaca_mulatta_mml.dna_encoded.meme Processing Macaca_nemestrina_mne (DNA-encoded) ... Creating MEME file with command: awk -v sp=mne '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Macaca_nemestrina_mne.dna_encoded.meme Processing Macropus_eugenii_meu (DNA-encoded) ... Creating MEME file with command: awk -v sp=meu '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Macropus_eugenii_meu.dna_encoded.meme Processing Malus_domestica_mdm (DNA-encoded) ... Creating MEME file with command: awk -v sp=mdm '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Malus_domestica_mdm.dna_encoded.meme Processing Manduca_sexta_mse (DNA-encoded) ... Creating MEME file with command: awk -v sp=mse '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Manduca_sexta_mse.dna_encoded.meme Processing Manihot_esculenta_mes (DNA-encoded) ... Creating MEME file with command: awk -v sp=mes '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Manihot_esculenta_mes.dna_encoded.meme Processing Mareks_disease_mdv1 (DNA-encoded) ... Creating MEME file with command: awk -v sp=mdv1 '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Mareks_disease_mdv1.dna_encoded.meme Processing Mareks_disease_mdv2 (DNA-encoded) ... Creating MEME file with command: awk -v sp=mdv2 '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Mareks_disease_mdv2.dna_encoded.meme Processing Marsupenaeus_japonicus_mja (DNA-encoded) ... Creating MEME file with command: awk -v sp=mja '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Marsupenaeus_japonicus_mja.dna_encoded.meme Processing Medicago_truncatula_mtr (DNA-encoded) ... Creating MEME file with command: awk -v sp=mtr '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Medicago_truncatula_mtr.dna_encoded.meme Processing Merkel_cell_mcv (DNA-encoded) ... Creating MEME file with command: awk -v sp=mcv '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Merkel_cell_mcv.dna_encoded.meme Processing Monodelphis_domestica_mdo (DNA-encoded) ... Creating MEME file with command: awk -v sp=mdo '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Monodelphis_domestica_mdo.dna_encoded.meme Processing Mouse_cytomegalovirus_mcmv (DNA-encoded) ... Creating MEME file with command: awk -v sp=mcmv '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Mouse_cytomegalovirus_mcmv.dna_encoded.meme Processing Mouse_gammaherpesvirus_mghv (DNA-encoded) ... Creating MEME file with command: awk -v sp=mghv '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Mouse_gammaherpesvirus_mghv.dna_encoded.meme Processing Mus_musculus_mmu (DNA-encoded) ... Creating MEME file with command: awk -v sp=mmu '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Mus_musculus_mmu.dna_encoded.meme Processing Nasonia_giraulti_ngi (DNA-encoded) ... Creating MEME file with command: awk -v sp=ngi '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Nasonia_giraulti_ngi.dna_encoded.meme Processing Nasonia_longicornis_nlo (DNA-encoded) ... Creating MEME file with command: awk -v sp=nlo '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Nasonia_longicornis_nlo.dna_encoded.meme Processing Nasonia_vitripennis_nvi (DNA-encoded) ... Creating MEME file with command: awk -v sp=nvi '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Nasonia_vitripennis_nvi.dna_encoded.meme Processing Nematostella_vectensis_nve (DNA-encoded) ... Creating MEME file with command: awk -v sp=nve '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Nematostella_vectensis_nve.dna_encoded.meme Processing Nicotiana_tabacum_nta (DNA-encoded) ... Creating MEME file with command: awk -v sp=nta '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Nicotiana_tabacum_nta.dna_encoded.meme Processing Oikopleura_dioica_odi (DNA-encoded) ... Creating MEME file with command: awk -v sp=odi '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Oikopleura_dioica_odi.dna_encoded.meme Processing Ophiophagus_hannah_oha (DNA-encoded) ... Creating MEME file with command: awk -v sp=oha '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Ophiophagus_hannah_oha.dna_encoded.meme Processing Ornithorhynchus_anatinus_oan (DNA-encoded) ... Creating MEME file with command: awk -v sp=oan '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Ornithorhynchus_anatinus_oan.dna_encoded.meme Processing Oryctolagus_cuniculus_ocu (DNA-encoded) ... Creating MEME file with command: awk -v sp=ocu '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Oryctolagus_cuniculus_ocu.dna_encoded.meme Processing Oryza_sativa_osa (DNA-encoded) ... Creating MEME file with command: awk -v sp=osa '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Oryza_sativa_osa.dna_encoded.meme Processing Oryzias_latipes_ola (DNA-encoded) ... Creating MEME file with command: awk -v sp=ola '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Oryzias_latipes_ola.dna_encoded.meme Processing Ovis_aries_oar (DNA-encoded) ... Creating MEME file with command: awk -v sp=oar '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Ovis_aries_oar.dna_encoded.meme Processing Pan_paniscus_ppa (DNA-encoded) ... Creating MEME file with command: awk -v sp=ppa '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Pan_paniscus_ppa.dna_encoded.meme Processing Pan_troglodytes_ptr (DNA-encoded) ... Creating MEME file with command: awk -v sp=ptr '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Pan_troglodytes_ptr.dna_encoded.meme Processing Panagrellus_redivivus_prd (DNA-encoded) ... Creating MEME file with command: awk -v sp=prd '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Panagrellus_redivivus_prd.dna_encoded.meme Processing Panax_ginseng_pgi (DNA-encoded) ... Creating MEME file with command: awk -v sp=pgi '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Panax_ginseng_pgi.dna_encoded.meme Processing Paralichthys_olivaceus_pol (DNA-encoded) ... Creating MEME file with command: awk -v sp=pol '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Paralichthys_olivaceus_pol.dna_encoded.meme Processing Patiria_miniata_pmi (DNA-encoded) ... Creating MEME file with command: awk -v sp=pmi '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Patiria_miniata_pmi.dna_encoded.meme Processing Petromyzon_marinus_pma (DNA-encoded) ... Creating MEME file with command: awk -v sp=pma '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Petromyzon_marinus_pma.dna_encoded.meme Processing Phaeodactylum_tricornutum_pti (DNA-encoded) ... Creating MEME file with command: awk -v sp=pti '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Phaeodactylum_tricornutum_pti.dna_encoded.meme Processing Phaseolus_vulgaris_pvu (DNA-encoded) ... Creating MEME file with command: awk -v sp=pvu '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Phaseolus_vulgaris_pvu.dna_encoded.meme Processing Physcomitrella_patens_ppt (DNA-encoded) ... Creating MEME file with command: awk -v sp=ppt '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Physcomitrella_patens_ppt.dna_encoded.meme Processing Phytophthora_infestans_pin (DNA-encoded) ... Creating MEME file with command: awk -v sp=pin '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Phytophthora_infestans_pin.dna_encoded.meme Processing Phytophthora_ramorum_pra (DNA-encoded) ... Creating MEME file with command: awk -v sp=pra '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Phytophthora_ramorum_pra.dna_encoded.meme Processing Phytophthora_sojae_psj (DNA-encoded) ... Creating MEME file with command: awk -v sp=psj '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Phytophthora_sojae_psj.dna_encoded.meme Processing Picea_abies_pab (DNA-encoded) ... Creating MEME file with command: awk -v sp=pab '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Picea_abies_pab.dna_encoded.meme Processing Pinus_densata_pde (DNA-encoded) ... Creating MEME file with command: awk -v sp=pde '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Pinus_densata_pde.dna_encoded.meme Processing Pinus_taeda_pta (DNA-encoded) ... Creating MEME file with command: awk -v sp=pta '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Pinus_taeda_pta.dna_encoded.meme Processing Plutella_xylostella_pxy (DNA-encoded) ... Creating MEME file with command: awk -v sp=pxy '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Plutella_xylostella_pxy.dna_encoded.meme Processing Pongo_pygmaeus_ppy (DNA-encoded) ... Creating MEME file with command: awk -v sp=ppy '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Pongo_pygmaeus_ppy.dna_encoded.meme Processing Populus_euphratica_peu (DNA-encoded) ... Creating MEME file with command: awk -v sp=peu '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Populus_euphratica_peu.dna_encoded.meme Processing Populus_trichocarpa_ptc (DNA-encoded) ... Creating MEME file with command: awk -v sp=ptc '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Populus_trichocarpa_ptc.dna_encoded.meme Processing Pristionchus_pacificus_ppc (DNA-encoded) ... Creating MEME file with command: awk -v sp=ppc '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Pristionchus_pacificus_ppc.dna_encoded.meme Processing Prunus_persica_ppe (DNA-encoded) ... Creating MEME file with command: awk -v sp=ppe '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Prunus_persica_ppe.dna_encoded.meme Processing Pseudorabies_virus_prv (DNA-encoded) ... Creating MEME file with command: awk -v sp=prv '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Pseudorabies_virus_prv.dna_encoded.meme Processing Pygathrix_bieti_pbi (DNA-encoded) ... Creating MEME file with command: awk -v sp=pbi '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Pygathrix_bieti_pbi.dna_encoded.meme Processing Rattus_norvegicus_rno (DNA-encoded) ... Creating MEME file with command: awk -v sp=rno '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Rattus_norvegicus_rno.dna_encoded.meme Processing Rehmannia_glutinosa_rgl (DNA-encoded) ... Creating MEME file with command: awk -v sp=rgl '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Rehmannia_glutinosa_rgl.dna_encoded.meme Processing Rhesus_lymphocryptovirus_rlcv (DNA-encoded) ... Creating MEME file with command: awk -v sp=rlcv '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Rhesus_lymphocryptovirus_rlcv.dna_encoded.meme Processing Rhesus_monkey_rrv (DNA-encoded) ... Creating MEME file with command: awk -v sp=rrv '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Rhesus_monkey_rrv.dna_encoded.meme Processing Rhipicephalus_microplus_rmi (DNA-encoded) ... Creating MEME file with command: awk -v sp=rmi '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Rhipicephalus_microplus_rmi.dna_encoded.meme Processing Ricinus_communis_rco (DNA-encoded) ... Creating MEME file with command: awk -v sp=rco '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Ricinus_communis_rco.dna_encoded.meme Processing Saccharum_officinarum_sof (DNA-encoded) ... Creating MEME file with command: awk -v sp=sof '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Saccharum_officinarum_sof.dna_encoded.meme Processing Saccharum_sp._ssp (DNA-encoded) ... Creating MEME file with command: awk -v sp=ssp '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Saccharum_sp._ssp.dna_encoded.meme Processing Saccoglossus_kowalevskii_sko (DNA-encoded) ... Creating MEME file with command: awk -v sp=sko '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Saccoglossus_kowalevskii_sko.dna_encoded.meme Processing Saguinus_labiatus_sla (DNA-encoded) ... Creating MEME file with command: awk -v sp=sla '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Saguinus_labiatus_sla.dna_encoded.meme Processing Salmo_salar_ssa (DNA-encoded) ... Creating MEME file with command: awk -v sp=ssa '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Salmo_salar_ssa.dna_encoded.meme Processing Salvia_sclarea_ssl (DNA-encoded) ... Creating MEME file with command: awk -v sp=ssl '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Salvia_sclarea_ssl.dna_encoded.meme Processing Sarcophilus_harrisii_sha (DNA-encoded) ... Creating MEME file with command: awk -v sp=sha '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Sarcophilus_harrisii_sha.dna_encoded.meme Processing Schistosoma_japonicum_sja (DNA-encoded) ... Creating MEME file with command: awk -v sp=sja '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Schistosoma_japonicum_sja.dna_encoded.meme Processing Schistosoma_mansoni_sma (DNA-encoded) ... Creating MEME file with command: awk -v sp=sma '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Schistosoma_mansoni_sma.dna_encoded.meme Processing Schmidtea_mediterranea_sme (DNA-encoded) ... Creating MEME file with command: awk -v sp=sme '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Schmidtea_mediterranea_sme.dna_encoded.meme Processing Selaginella_moellendorffii_smo (DNA-encoded) ... Creating MEME file with command: awk -v sp=smo '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Selaginella_moellendorffii_smo.dna_encoded.meme Processing Simian_virus_sv40 (DNA-encoded) ... Creating MEME file with command: awk -v sp=sv40 '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Simian_virus_sv40.dna_encoded.meme Processing Solanum_lycopersicum_sly (DNA-encoded) ... Creating MEME file with command: awk -v sp=sly '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Solanum_lycopersicum_sly.dna_encoded.meme Processing Solanum_tuberosum_stu (DNA-encoded) ... Creating MEME file with command: awk -v sp=stu '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Solanum_tuberosum_stu.dna_encoded.meme Processing Sorghum_bicolor_sbi (DNA-encoded) ... Creating MEME file with command: awk -v sp=sbi '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Sorghum_bicolor_sbi.dna_encoded.meme Processing Strigamia_maritima_smr (DNA-encoded) ... Creating MEME file with command: awk -v sp=smr '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Strigamia_maritima_smr.dna_encoded.meme Processing Strongylocentrotus_purpuratus_spu (DNA-encoded) ... Creating MEME file with command: awk -v sp=spu '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Strongylocentrotus_purpuratus_spu.dna_encoded.meme Processing Strongyloides_ratti_str (DNA-encoded) ... Creating MEME file with command: awk -v sp=str '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Strongyloides_ratti_str.dna_encoded.meme Processing Sus_scrofa_ssc (DNA-encoded) ... Creating MEME file with command: awk -v sp=ssc '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Sus_scrofa_ssc.dna_encoded.meme Processing Sycon_ciliatum_sci (DNA-encoded) ... Creating MEME file with command: awk -v sp=sci '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Sycon_ciliatum_sci.dna_encoded.meme Processing Symphalangus_syndactylus_ssy (DNA-encoded) ... Creating MEME file with command: awk -v sp=ssy '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Symphalangus_syndactylus_ssy.dna_encoded.meme Processing Taeniopygia_guttata_tgu (DNA-encoded) ... Creating MEME file with command: awk -v sp=tgu '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Taeniopygia_guttata_tgu.dna_encoded.meme Processing Terebratulina_retusa_tre (DNA-encoded) ... Creating MEME file with command: awk -v sp=tre '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Terebratulina_retusa_tre.dna_encoded.meme Processing Tetranychus_urticae_tur (DNA-encoded) ... Creating MEME file with command: awk -v sp=tur '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Tetranychus_urticae_tur.dna_encoded.meme Processing Tetraodon_nigroviridis_tni (DNA-encoded) ... Creating MEME file with command: awk -v sp=tni '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Tetraodon_nigroviridis_tni.dna_encoded.meme Processing Theobroma_cacao_tcc (DNA-encoded) ... Creating MEME file with command: awk -v sp=tcc '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Theobroma_cacao_tcc.dna_encoded.meme Processing Tribolium_castaneum_tca (DNA-encoded) ... Creating MEME file with command: awk -v sp=tca '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Tribolium_castaneum_tca.dna_encoded.meme Processing Triticum_aestivum_tae (DNA-encoded) ... Creating MEME file with command: awk -v sp=tae '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Triticum_aestivum_tae.dna_encoded.meme Processing Triticum_turgidum_ttu (DNA-encoded) ... Creating MEME file with command: awk -v sp=ttu '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Triticum_turgidum_ttu.dna_encoded.meme Processing Tupaia_chinensis_tch (DNA-encoded) ... Creating MEME file with command: awk -v sp=tch '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Tupaia_chinensis_tch.dna_encoded.meme Processing Vigna_unguiculata_vun (DNA-encoded) ... Creating MEME file with command: awk -v sp=vun '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Vigna_unguiculata_vun.dna_encoded.meme Processing Vitis_vinifera_vvi (DNA-encoded) ... Creating MEME file with command: awk -v sp=vvi '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Vitis_vinifera_vvi.dna_encoded.meme Processing Xenopus_laevis_xla (DNA-encoded) ... Creating MEME file with command: awk -v sp=xla '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Xenopus_laevis_xla.dna_encoded.meme Processing Xenopus_tropicalis_xtr (DNA-encoded) ... Creating MEME file with command: awk -v sp=xtr '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Xenopus_tropicalis_xtr.dna_encoded.meme Processing Xenoturbella_bocki_xbo (DNA-encoded) ... Creating MEME file with command: awk -v sp=xbo '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Xenoturbella_bocki_xbo.dna_encoded.meme Processing Zea_mays_zma (DNA-encoded) ... Creating MEME file with command: awk -v sp=zma '$1 ~ sp"-" {print; getline; print;}' ../miRBase/21/mature.fa | rna2meme -url "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MOTIF_AC" -seed_start 2 -seed_end 7 - > MIRBASE/Zea_mays_zma.dna_encoded.meme Processing DAP motifs (O'Malley2016) ... Creating MEME file with command: perl -e ' $url="http://neomorph.salk.edu/dap_web/pages/browse_table_aj.php?AGI"; while (<>) { if (/^MOTIF ([^\.]*.)([^_]*)(_[^\s]*)/) { printf("URL $url=$tf\n\n\n") if ($tf); $tf=$2; printf("MOTIF $1$2$3 $2\n"); } else {print;} } printf("URL $url=$tf\n\n\n");' ../plant_cistrome/DAPv1/dap_may2016_pf4.meme > ARABD/ArabidopsisDAPv1.meme Processing PBM motifs (Franco-Zorrilla2014) ... Creating MEME file with command: uniprobe2meme -logodds -url "http://floresta.eead.csic.es/footprintdb/index.php?db=ArabidopsisPBM:20140210&motif=MOTIF_NAME" < ../ArabidopsisPBM/PWMs20140210_footprintDB_names.txt > ARABD/ArabidopsisPBM_20140210.meme Converted 113 motifs. Skipped 0 motifs. Processing Swiss Regulon ... Creating MEME file with command: set url = "http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3531101"; transfac2meme -use_name -url "$url" ../SwissRegulon/e.coli_WMs.txt > ECOLI/SwissRegulon_e_coli.meme Converted 97 motifs. Skipped 0 motifs. 0 conversion errors. Processing DPINTERACT ... Creating MEME file with command: meme2meme -logodds -url "http://arep.med.harvard.edu/ecoli_matrices/MOTIF_NAME.html" ../ecoli_dpinteract/meme/*.meme > ECOLI/dpinteract.meme Processing Combined Drosophila Databases ... ...Nothing to do for this database. Processing OnTheFly_2014 ... Creating MEME file with command: sites2meme -map ../OnTheFly/idmap.txt -url "https://bhapp.c2b2.columbia.edu/OnTheFly/cgi-bin/motif_entry.php?protein_ID=MOTIF_NAME" ../OnTheFly/motifs > FLY/OnTheFly_2014_Drosophila.meme Converted 608 motifs. 0 conversion errors. Processing Fly Factor Survey ... Creating MEME file with command: sed -e 's/^>\(.*\)_\([^_]*\)$/>\2 \1/g' ../fly_factor_survey/UmassPGFE_PWMfreq_PublicDatasetA_20130124.txt | chen2meme -url "http://pgfe.umassmed.edu/TFDBS/TFdetails.php?FlybaseID=MOTIF_NAME" > FLY/fly_factor_survey.meme Converted 656 motifs. Skipped 0 motifs. Processing FLYREG (Bergman & Pollard v2) ... Creating MEME file with command: jaspar2meme -cm -url "http://www.danielpollard.com/matrices/bergman2004/matrices/MOTIF_NAME.info" ../flyreg_motifs/matrices > FLY/flyreg.v2.meme Processing iDMMPMM (Kulakovskiy et al. 2009) ... Creating MEME file with command: cp ../Kulakovskiy/idmmpmm.txt FLY/idmmpmm2009.meme Processing DMMPMM (Kulakovskiy et al. 2009) ... Creating MEME file with command: cp ../Kulakovskiy/dmmpmm.txt FLY/dmmpmm2009.meme Processing HOCOMOCO Human (v10) ... Creating MEME file with command: cp ../HOCOMOCO/HOCOMOCOv10_HUMAN_mono_meme_format.meme HUMAN usage: mkdir [-pv] [-m mode] directory ... Processing HOCOMOCO (v9) ... Creating MEME file with command: set url = "http://floresta.eead.csic.es/footprintdb/index.php?db=HOCOMOCO:v9&motif=MOTIF_NAME"; transfac2meme -url "$url" -bg ../HOCOMOCO/bkg.txt ../HOCOMOCO/HOCOMOCOv9_AD_TRANSFAC.txt > HUMAN/HOCOMOCOv9.meme Converted 426 motifs. Skipped 0 motifs. 0 conversion errors. Processing Malaria (Campbell et al. 2010) ... Creating MEME file with command: uniprobe2meme -logodds ../Campbell2010/journal.ppat.1001165.s019.csv > MALARIA/campbell2010_malaria_pbm.meme Converted 23 motifs. Skipped 0 motifs. Processing HOCOMOCO Mouse (v10) ... Creating MEME file with command: cp ../HOCOMOCO/HOCOMOCOv10_MOUSE_mono_meme_format.meme MOUSE usage: mkdir [-pv] [-m mode] directory ... Processing UniPROBE Mouse (Sci09 Cell08) ... Creating MEME file with command: url="http://the_brain.bwh.harvard.edu/uniprobe/details2.php?id=MOTIF_NAME"; sg="../uniprobe/uniprobe_screen_grab"; uniprobe2meme -logodds -sg $sg -sp "Badis et al., Science 2009" -url $url < ../uniprobe/104_pwms_all_concat.txt > MOUSE/uniprobe_mouse.meme; uniprobe2meme -logodds -sg $sg -sp "Berger et al., Cell 2008" -url $url < ../uniprobe/homeo_pwm_all.txt | tail +10 >> MOUSE/uniprobe_mouse.meme Converted 208 motifs. Skipped 0 motifs. Converted 178 motifs. Skipped 0 motifs. Processing Embryonic Stem Cell TFs (Chen2008) ... Creating MEME file with command: chen2meme -logodds < ../Chen2008/chen2008_motifs.txt > MOUSE/chen2008.meme Converted 12 motifs. Skipped 0 motifs. Processing UniPROBE Worm (Cell09) ... Creating MEME file with command: awk '{if($1=="Protein:"){print $2;}else{print}}' ../uniprobe/worm_pwm_all.txt | uniprobe2meme -logodds -sg ../uniprobe/uniprobe_screen_grab -sp "Grove et al., Cell 2009" -url "http://the_brain.bwh.harvard.edu/uniprobe/details2.php?id=MOTIF_NAME" > WORM/uniprobe_worm.meme Converted 31 motifs. Skipped 0 motifs. Processing YEASTRACT ... Creating MEME file with command: transfac2meme -url "http://www.yeastract.com/view.php?existing=consensus&proteinname=MOTIF_NAME" ../YEASTRACT/TFConsensusList_20130918_with_ids.transfac > YEAST/YEASTRACT_20130918.meme Converted 732 motifs. Skipped 0 motifs. 0 conversion errors. Processing Swiss Regulon Yeast ... Creating MEME file with command: set url = "http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3531101"; transfac2meme -use_name -url "$url" ../SwissRegulon/ozonov_scer > YEAST/SwissRegulon_s_cer.meme Converted 158 motifs. Skipped 0 motifs. 0 conversion errors. Processing UniPROBE Yeast (GR09) ... Creating MEME file with command: uniprobe2meme -logodds -sg "../uniprobe/uniprobe_screen_grab" -sp "Zhu et al., Genome Res 2009" -url "http://the_brain.bwh.harvard.edu/uniprobe/details2.php?id=MOTIF_NAME" < ../uniprobe/GR09_pwm_all.txt > YEAST/YEAST_UniPROBE_GR09.meme Converted 89 motifs. Skipped 0 motifs. Processing MacIsaac (v1) ... Creating MEME file with command: tamo2meme -logodds -url "http://fraenkel.mit.edu/improved_map/v1.tamo" ../macisaac_yeast/v1.tamo > YEAST/macisaac_yeast.v1.meme Processing SCPD ... Creating MEME file with command: scpd2meme -logodds -url "http://rulai.cshl.edu/cgi-bin/SCPD/getfactor?MOTIF_NAME" ../scpd/scpd.txt > YEAST/scpd_matrix.meme Converted 24 motifs. Skipped 0 motifs. 0 conversion errors. Processing SCPD + MacIsaac ... ...Nothing to do for this database. Creating tar file ... a motif_databases a motif_databases/ARABD a motif_databases/CIS-BP a motif_databases/CISBP-RNA a motif_databases/ECOLI a motif_databases/EUKARYOTE a motif_databases/FLY a motif_databases/HUMAN a motif_databases/JASPAR