******************************************************************************** XSTREME - Motif Discovery and Enrichment Analysis ******************************************************************************** MEME version 5.4.0 (Mon Aug 16 16:18:19 2021 -0700) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Charles E. Grant and Timothy L. Bailey, "XSTREME: comprehensive motif analysis of biological sequence datasets", BioRxiv, 2021. ******************************************************************************** ALPHABET= ACGT strands: + - Background letter frequencies (from file `results/xstreme7/background'): A 0.22130 C 0.27870 G 0.27870 T 0.22130 MOTIF 6-GCCACCAGRGGGCRG STREME-6 letter-probability matrix: alength= 4 w= 15 nsites= 43 E= 3.5e+000 0.116622 0.000932 0.812178 0.070269 0.093445 0.789001 0.024108 0.093445 0.047093 0.928059 0.000932 0.023916 0.719243 0.000932 0.209556 0.070269 0.000740 0.789001 0.209519 0.000740 0.023916 0.742649 0.024108 0.209327 0.811949 0.070461 0.070498 0.047093 0.000740 0.070461 0.928059 0.000740 0.394775 0.070461 0.441282 0.093482 0.023916 0.093637 0.858530 0.023916 0.000740 0.163203 0.812140 0.023916 0.000740 0.024108 0.904883 0.070269 0.070269 0.858530 0.024108 0.047093 0.487517 0.070461 0.441282 0.000740 0.023916 0.232695 0.649943 0.093445 MOTIF DHWTGCTGAGTCAT MEME-1 letter-probability matrix: alength= 4 w= 14 nsites= 60 E= 4.7e-045 0.366667 0.033333 0.200000 0.400000 0.250000 0.366667 0.133333 0.250000 0.500000 0.133333 0.050000 0.316667 0.000000 0.050000 0.116667 0.833333 0.016667 0.066667 0.866667 0.050000 0.083333 0.850000 0.066667 0.000000 0.116667 0.000000 0.000000 0.883333 0.033333 0.066667 0.900000 0.000000 0.850000 0.000000 0.000000 0.150000 0.066667 0.250000 0.683333 0.000000 0.000000 0.016667 0.000000 0.983333 0.000000 0.950000 0.050000 0.000000 0.983333 0.000000 0.016667 0.000000 0.000000 0.300000 0.083333 0.616667 MOTIF 2-CCCCTCCCCT STREME-2 letter-probability matrix: alength= 4 w= 10 nsites= 89 E= 5.2e-001 0.024221 0.812096 0.000479 0.163204 0.000381 0.823997 0.088899 0.086723 0.000381 0.974920 0.024319 0.000381 0.000381 0.867582 0.131657 0.000381 0.133952 0.000479 0.141394 0.724175 0.064922 0.905399 0.029299 0.000381 0.136538 0.661981 0.148480 0.053002 0.000381 0.934199 0.065040 0.000381 0.060000 0.675754 0.131619 0.132627 0.160378 0.131739 0.213319 0.494565 MOTIF MA0466.1 CEBPB letter-probability matrix: alength= 4 w= 11 nsites= 38 E= 1.66e-003 0.130721 0.100770 0.337880 0.430629 0.755804 0.058978 0.185217 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.045792 0.000000 0.759151 0.195057 0.000000 1.000000 0.000000 0.000000 0.750950 0.055059 0.100659 0.093332 0.086980 0.522182 0.000000 0.390838 0.604569 0.395431 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.362213 0.020534 0.617253 URL http://jaspar2014.genereg.net?ID=MA0466.1&rm=present&collection=CORE MOTIF 1-VTTATC STREME-1 letter-probability matrix: alength= 4 w= 6 nsites= 95 E= 1.9e-001 0.248460 0.434145 0.315979 0.001416 0.001416 0.001783 0.046128 0.950673 0.001416 0.001783 0.001783 0.995018 0.995018 0.001783 0.001783 0.001416 0.001416 0.001783 0.001783 0.995018 0.001416 0.995385 0.001783 0.001416 MOTIF CCDCYYCC MEME-4 letter-probability matrix: alength= 4 w= 8 nsites= 116 E= 1.6e-009 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.413793 0.000000 0.284483 0.301724 0.000000 1.000000 0.000000 0.000000 0.000000 0.612069 0.000000 0.387931 0.000000 0.474138 0.000000 0.525862 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF 4-CAACCACA STREME-4 letter-probability matrix: alength= 4 w= 8 nsites= 34 E= 8.5e-001 0.131973 0.734900 0.033967 0.099161 0.982797 0.001313 0.014848 0.001043 0.996332 0.001313 0.001313 0.001043 0.105633 0.751341 0.011054 0.131973 0.004062 0.960929 0.001313 0.033696 0.884329 0.056171 0.033967 0.025533 0.033696 0.931295 0.033967 0.001043 0.767177 0.066673 0.001313 0.164837 MOTIF MA0148.3 FOXA1 letter-probability matrix: alength= 4 w= 15 nsites= 28 E= 4.57e-001 0.196656 0.219329 0.187386 0.396628 0.211696 0.311296 0.214967 0.262041 0.139131 0.388859 0.241458 0.230553 0.324200 0.196156 0.165440 0.314204 0.003181 0.000000 0.000545 0.996274 0.267312 0.000000 0.732688 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.058706 0.941294 0.000000 0.000000 0.129907 0.870093 0.829335 0.000000 0.170665 0.000000 0.000000 0.934024 0.000000 0.065976 0.417712 0.120638 0.000000 0.461650 0.037577 0.331516 0.063250 0.567657 0.486278 0.000045 0.002863 0.510814 0.218421 0.118275 0.427799 0.235505 URL http://jaspar2014.genereg.net?ID=MA0148.3&rm=present&collection=CORE MOTIF 5-GACTACAK STREME-5 letter-probability matrix: alength= 4 w= 8 nsites= 52 E= 1.3e+000 0.000655 0.000825 0.794272 0.204249 0.997696 0.000825 0.000825 0.000655 0.000655 0.590877 0.214587 0.193882 0.000655 0.000825 0.050374 0.948146 0.997696 0.000825 0.000825 0.000655 0.000655 0.886792 0.029833 0.082720 0.631894 0.021333 0.193996 0.152777 0.199288 0.091456 0.457314 0.251943 MOTIF WAAAAAAAAAAAVAA MEME-2 letter-probability matrix: alength= 4 w= 15 nsites= 24 E= 1.7e-024 0.500000 0.000000 0.166667 0.333333 0.666667 0.000000 0.291667 0.041667 0.583333 0.250000 0.083333 0.083333 0.916667 0.083333 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.833333 0.166667 0.000000 0.000000 0.875000 0.000000 0.000000 0.125000 0.916667 0.000000 0.000000 0.083333 0.583333 0.208333 0.208333 0.000000 1.000000 0.000000 0.000000 0.000000 0.916667 0.083333 0.000000 0.000000 0.833333 0.000000 0.166667 0.000000 0.416667 0.208333 0.375000 0.000000 0.958333 0.041667 0.000000 0.000000 0.833333 0.000000 0.125000 0.041667