RANK SEED_MOTIF CLUSTER SOURCE ID ALT_ID CONSENSUS WIDTH SITES SEA_PVALUE EVALUE EVALUE_ACC SIM_SOURCE SIM_MOTIF MOTIF_URL 1 1 1 STREME 1-Sm1BCMWS STREME-1 Sm1BCMWS 8 1148 1.11e-269 2.81e-031 1 common/Jaspar-subset.meme MA0140.1 (Tal1::Gata1) http://jaspar.genereg.net/cgi-bin/jaspar_db.pl?ID=MA0140.1&rm=present&collection=CORE 2 0 1 MEME Vm1DGV MEME-3 Vm1DGV 6 605 3.64e-253 7.20e-007 1 common/dna_with_covalent.meme Gm1TGC (GCAm1C) 3 0 1 MEME m1SAGV MEME-1 m1SAGV 6 855 1.47e-250 9.30e-030 1 MEME m1SAGV 4 0 1 MEME m1SCHNCH MEME-2 m1SCHNCH 8 566 1.99e-250 5.40e-019 1 common/dna_with_covalent.meme TGCm1C (Gm1GCA) 5 1 2 STREME 2-KCWGCWGM STREME-2 KCWGCWGM 8 1171 4.94e-172 1.50e-017 1 common/dna_with_covalent.meme GCAGCA (TGCTGC) 6 1 3 common/dna_with_covalent.meme Gm7GCA TGCx1C Gm7GCA 6 357 1.13e-091 2.95e-090 1 common/dna_with_covalent.meme Gm7GCA 7 0 3 common/dna_with_covalent.meme TGCm1C Gm1GCA TGCm1C 6 356 2.44e-091 6.33e-090 1 common/dna_with_covalent.meme TGCm1C 8 1 4 common/dna_with_covalent.meme GCAm7C Gx1TGC GCAm7C 6 325 2.69e-084 6.98e-083 1 common/dna_with_covalent.meme GCAm7C 9 0 4 common/dna_with_covalent.meme GCAm1C Gm1TGC GCAm1C 6 323 1.22e-083 3.17e-082 1 common/dna_with_covalent.meme GCAm1C 9 0 4 common/dna_with_covalent.meme Gm1TGC GCAm1C Gm1TGC 6 323 1.22e-083 3.17e-082 1 common/dna_with_covalent.meme Gm1TGC 10 0 3 common/dna_with_covalent.meme GCAGCA TGCTGC GCAGCA 6 312 3.85e-047 1.00e-045 1 common/dna_with_covalent.meme GCAGCA 11 0 3 common/dna_with_covalent.meme GCm1C1 mGm1GC GCm1C1 6 179 1.12e-040 2.90e-039 1 common/dna_with_covalent.meme GCm1C1 12 1 5 common/Jaspar-subset.meme MA0079.2 SP1 CCCCKCCCCC 10 1363 6.45e-033 1.68e-031 1 common/Jaspar-subset.meme MA0079.2 http://jaspar.genereg.net/cgi-bin/jaspar_db.pl?ID=MA0079.2&rm=present&collection=CORE 13 1 6 common/Jaspar-subset.meme MA0091.1 TAL1::TCF3 NSAMCATCTGKT 12 238 2.16e-028 5.61e-027 1 common/Jaspar-subset.meme MA0091.1 http://jaspar.genereg.net/cgi-bin/jaspar_db.pl?ID=MA0091.1&rm=present&collection=CORE 14 0 5 common/Jaspar-subset.meme MA0079.1 SP1 KRGGCDGGGT 10 477 4.30e-017 1.12e-015 1 common/Jaspar-subset.meme MA0079.1 http://jaspar.genereg.net/cgi-bin/jaspar_db.pl?ID=MA0079.1&rm=present&collection=CORE 15 1 7 common/Jaspar-subset.meme MA0140.1 Tal1::Gata1 CTGBNNNNNDSAGATAAG 18 943 5.81e-013 1.51e-011 1 common/Jaspar-subset.meme MA0140.1 http://jaspar.genereg.net/cgi-bin/jaspar_db.pl?ID=MA0140.1&rm=present&collection=CORE 16 0 3 common/dna_with_covalent.meme TGCmGC GC1GCA TGCmGC 6 78 1.61e-011 4.18e-010 1 common/dna_with_covalent.meme TGCmGC 17 1 8 common/dna_with_covalent.meme CCTTCC GGAAGG CCTTCC 6 127 2.52e-005 6.55e-004 1 common/dna_with_covalent.meme CCTTCC 18 1 9 common/Jaspar-subset.meme MA0270.1 AFT2 SACACCCB 8 36 2.95e-005 7.66e-004 1 common/Jaspar-subset.meme MA0270.1 http://jaspar.genereg.net/cgi-bin/jaspar_db.pl?ID=MA0270.1&rm=present&collection=CORE # XSTREME (Motif Discovery and Enrichment Analysis): Version 5.4.0 released on Mon Aug 16 16:18:19 2021 -0700 # The format of this file is described at https://meme-suite.org/meme/doc/xstreme-output-format.html # xstreme --p common/dna_with_covalent.fa --oc results/xstreme4 --verbosity 0 --m common/Jaspar-subset.meme --m common/dna_with_covalent.meme --meme-nmotifs 3 --streme-nmotifs 2 --meme-searchsize 10000 --xalph common/dna_with_covalent.alph --bfile common/dna_with_covalent.bg --ctrim 100 --meme-p 6