Query_ID	Target_ID	Optimal_offset	p-value	E-value	q-value	Overlap	Query_consensus	Target_consensus	Orientation
GCAGCA	GCAGCA	0	1.58161e-06	3.32138e-05	6.64275e-05	6	GCAGCA	GCAGCA	+
GCAGCA	TGCmGC	0	0.000520336	0.0109271	0.0109271	6	GCAGCA	GC1GCA	-
GCAGCA	Gm7GCA	0	0.0179927	0.377846	0.147551	6	GCAGCA	Gm1GCA	+
GCAGCA	TGCm1C	0	0.0179927	0.377846	0.147551	6	GCAGCA	Gm1GCA	-
GCAGCA	MA0079.1	3	0.0658062	1.38193	0.394837	6	GCAGCA	GGGGCGGGGT	+
GCAGCA	MA0091.1	0	0.196456	4.12557	0.602639	6	GCAGCA	CGACCATCTGTT	+
GCAGCA	GCAm1C	-3	0.213305	4.47941	0.602639	3	GCAGCA	GCAm1C	+
GCAGCA	GCAm7C	-3	0.213305	4.47941	0.602639	3	GCAGCA	GCAm1C	+
GCAGCA	Gm1TGC	-3	0.213305	4.47941	0.602639	3	GCAGCA	GCAm1C	-
GCAGCA	MA0270.1	1	0.214965	4.51427	0.602639	6	GCAGCA	CACACCCC	+
GCAGCA	CCTTCC	1	0.230706	4.84483	0.602639	5	GCAGCA	GGAAGG	-
GCAGCA	GCm1C1	0	0.258274	5.42375	0.602639	6	GCAGCA	GCm1C1	+
GCAGCA	MA0079.2	4	0.385803	8.10186	0.810186	6	GCAGCA	GGGGGCGGGG	-
GCAGCA	MA0039.2	0	0.460213	9.66447	0.878588	6	GCAGCA	GCCCCACCCA	-
TGCm1C	TGCm1C	0	1.63535e-06	3.43423e-05	6.86846e-05	6	TGCm1C	TGCm1C	+
TGCm1C	Gm7GCA	0	1.57925e-05	0.000331644	0.000331644	6	TGCm1C	TGCm1C	-
TGCm1C	GCm1C1	-1	0.000215603	0.00452767	0.00301845	5	TGCm1C	GCm1C1	+
TGCm1C	TGCmGC	0	0.000685256	0.0143904	0.00719518	6	TGCm1C	TGCmGC	+
TGCm1C	GCAGCA	0	0.0287865	0.604516	0.241807	6	TGCm1C	TGCTGC	-
TGCm1C	GCAm1C	0	0.0582629	1.22352	0.349577	6	TGCm1C	GCAm1C	+
TGCm1C	Gm1TGC	0	0.0582629	1.22352	0.349577	6	TGCm1C	GCAm1C	-
TGCm1C	GCAm7C	0	0.142123	2.98459	0.733054	6	TGCm1C	GCAm1C	+
TGCm1C	MA0079.1	4	0.235061	4.93628	0.733054	6	TGCm1C	ACCCCGCCCC	-
TGCm1C	Tm1m1m1m1m1m1m1m1m1m1m1m1	0	0.405914	8.52419	0.999989	6	TGCm1C	Tm1m1m1m1m1m1m1m1m1m1m1m1	+

# Tomtom (Motif Comparison Tool): Version 5.4.0 compiled on May 20 2021 at 11:57:59
# The format of this file is described at https://meme-suite.org/meme/doc/tomtom-output-format.html.
# tomtom -oc results/tomtom1 -verbosity 1 -evalue -thresh 10 -m TGCm1C -mi 3 -xalph -bfile common/dna_with_covalent.bg -dist allr common/dna_with_covalent.meme common/dna_with_covalent.meme common/Jaspar-subset.meme