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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.4.0 (Release date: Mon Aug 16 16:18:19 2021 -0700)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: accurate and versatile sequence motif discovery",
Bioinformatics, Mar. 24, 2021.
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ALPHABET= ACGU

strands: +

Background letter frequencies
A 0.333 C 0.171 G 0.145 U 0.352 

MOTIF 1-HUGUAWAUAH STREME-1
letter-probability matrix: alength= 4 w= 10 nsites= 351 E= 4.4e-011
 0.226978 0.366888 0.064190 0.341945
 0.000205 0.000105 0.004363 0.995327
 0.000205 0.000105 0.999473 0.000217
 0.000205 0.000105 0.000089 0.999601
 0.916624 0.018968 0.025721 0.038688
 0.533429 0.149071 0.025727 0.291773
 0.999589 0.000105 0.000089 0.000217
 0.011062 0.000105 0.000089 0.988743
 0.999589 0.000105 0.000089 0.000217
 0.354054 0.185514 0.108245 0.352187

MOTIF 2-UAUAUAUAUAU STREME-2
letter-probability matrix: alength= 4 w= 11 nsites= 194 E= 2.2e-003
 0.000332 0.128073 0.000144 0.871451
 0.749206 0.000170 0.020912 0.229712
 0.039542 0.188715 0.000144 0.771599
 0.950395 0.049110 0.000144 0.000351
 0.000332 0.000170 0.000144 0.999354
 0.865978 0.000170 0.133501 0.000351
 0.000332 0.136012 0.058340 0.805316
 0.885737 0.027832 0.086080 0.000351
 0.000332 0.000170 0.013982 0.985515
 0.881715 0.000170 0.000144 0.117971
 0.034498 0.176454 0.007073 0.781975

MOTIF 3-GAAGAAGC STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 140 E= 9.0e-003
 0.055708 0.055657 0.788239 0.100396
 0.856823 0.005810 0.076803 0.060565
 0.806709 0.111034 0.000231 0.082026
 0.000531 0.022420 0.976486 0.000562
 0.689319 0.077817 0.221228 0.011636
 0.735886 0.050112 0.115585 0.098416
 0.025417 0.004866 0.969154 0.000562
 0.199438 0.560508 0.105508 0.134546

MOTIF 4-UUUUCUUYYUC STREME-4
letter-probability matrix: alength= 4 w= 11 nsites= 160 E= 4.7e-002
 0.085343 0.190242 0.000148 0.724267
 0.000340 0.190816 0.000148 0.808697
 0.000340 0.099155 0.092224 0.808282
 0.000340 0.049754 0.000148 0.949759
 0.000340 0.984969 0.000148 0.014543
 0.000340 0.104025 0.092229 0.803406
 0.007423 0.031449 0.134730 0.826398
 0.000340 0.421288 0.000148 0.578224
 0.000340 0.295062 0.187237 0.517361
 0.057004 0.264659 0.144746 0.533590
 0.038291 0.659164 0.028479 0.274066

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Stopped because 3 consecutive motifs exceeded the p-value threshold (1e-10).
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COMMAND:	streme -p common/Puf3p.s -oc results/streme7 -objfun de -order 1 -nmotifs 2 -rna -pvt 1e-10 -hofract 0.2 -verbosity 1
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CPU:		Timothys-Mac-Mini.local
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FINALTIME:	3.98 seconds
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