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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.4.0 (Release date: Mon Aug 16 16:18:19 2021 -0700)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: accurate and versatile sequence motif discovery",
Bioinformatics, Mar. 24, 2021.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.256 C 0.244 G 0.244 T 0.256 

MOTIF 1-ACACCCAGHT STREME-1
letter-probability matrix: alength= 4 w= 10 nsites= 133 E= 1.4e-001
 0.741911 0.107515 0.000082 0.150493
 0.075289 0.799657 0.124968 0.000086
 0.662191 0.000082 0.273181 0.064546
 0.000086 0.999747 0.000082 0.000086
 0.000086 0.924543 0.010825 0.064546
 0.053802 0.838597 0.064542 0.043059
 0.946034 0.000082 0.053798 0.000086
 0.104553 0.095402 0.606553 0.193491
 0.338110 0.281672 0.057580 0.322638
 0.217998 0.189205 0.131190 0.461607

MOTIF 2-CAGCTCTTGT STREME-2
letter-probability matrix: alength= 4 w= 10 nsites= 129 E= 3.4e-001
 0.000083 0.811983 0.135692 0.052242
 0.756804 0.106987 0.020943 0.115267
 0.057981 0.076882 0.687714 0.177423
 0.118613 0.755168 0.062670 0.063549
 0.104401 0.081359 0.135692 0.678548
 0.093969 0.832412 0.010945 0.062674
 0.126243 0.114729 0.083533 0.675495
 0.115708 0.052238 0.084511 0.747543
 0.052242 0.090915 0.856759 0.000083
 0.052242 0.108177 0.083434 0.756146

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Stopped because 2 consecutive motifs exceeded the p-value threshold (0.001).
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COMMAND:	streme -p common/Klf1-200.fa -oc results/streme9 -objfun cd -minw 6 -maxw 10 -pvt 0.001 -patience 2 -dna -nref 5 -hofract 0.2 -verbosity 1
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CPU:		Timothys-Mac-Mini.local
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FINALTIME:	0.95 seconds
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