******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.4.0 (Release date: Tue Mar 9 17:38:20 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= common/farntrans5.s CONTROL SEQUENCES= --none-- ALPHABET= ACDEFGHIKLMNPQRSTVWY Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ RAM1_YEAST 1.0000 431 PFTB_RAT 1.0000 437 BET2_YEAST 1.0000 325 RATRABGERB 1.0000 331 CAL1_YEAST 1.0000 376 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme common/farntrans5.s -oc results/meme13 -mod oops -protein -nmotifs 2 -objfun classic -minw 8 -nostatus -mpi model: mod= oops nmotifs= 2 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values width: minw= 8 maxw= 50 nsites: minsites= 5 maxsites= 5 wnsites= 0.8 theta: spmap= pam spfuzz= 120 em: prior= dmix b= 0 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 1900 N= 5 sample: seed= 0 hsfrac= 0 searchsize= 1900 norand= no csites= 1000 Dirichlet mixture priors file: prior30.plib Letter frequencies in dataset: A 0.0611 C 0.0368 D 0.0616 E 0.0605 F 0.0437 G 0.0753 H 0.03 I 0.0526 K 0.0505 L 0.114 M 0.0205 N 0.0337 P 0.0411 Q 0.0384 R 0.0405 S 0.0779 T 0.0458 V 0.0574 W 0.0179 Y 0.0411 Background letter frequencies (from file dataset with add-one prior applied): A 0.0609 C 0.037 D 0.0615 E 0.0604 F 0.0437 G 0.075 H 0.0302 I 0.0526 K 0.0505 L 0.113 M 0.0208 N 0.0339 P 0.0411 Q 0.0385 R 0.0406 S 0.0776 T 0.0458 V 0.0573 W 0.0182 Y 0.0411 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF EGGFQGRPNKLPDVCYSFWV MEME-1 width = 20 sites = 5 llr = 247 E-value = 2.3e-030 ******************************************************************************** -------------------------------------------------------------------------------- Motif EGGFQGRPNKLPDVCYSFWV MEME-1 Description -------------------------------------------------------------------------------- Simplified A :::::::::::2::::2::: pos.-specific C ::::2::2::::::a::::2 probability D 2:::::::::::a::::::: matrix E 6::::::22::::::::::: F :::6::::::2::::::6:: G :8a::a:::::::4:::::: H :::::::::::::::::::: I :::::::::::::::::::: K :::::::::a:::::::::: L :::4::::::8::::::::: M :::::::::::::::::::: N ::::4:::6::::::::::: P :::::::4:::4:::::::: Q ::::4::::::::::::::2 R :2::::a::::::::::::: S 2::::::22:::::::8::: T :::::::::::::2:::::: V :::::::::::4:4:::::6 W :::::::::::::::::4a: Y :::::::::::::::a:::: bits 5.8 * 5.2 * 4.6 * ** * 4.0 * * * ** ** Relative 3.5 ** *** * * ** ** Entropy 2.9 ******* ***** ****** (71.2 bits) 2.3 ******************** 1.7 ******************** 1.2 ******************** 0.6 ******************** 0.0 -------------------- Multilevel EGGFNGRPNKLPDGCYSFWV consensus DR LQ CE FV V AW C sequence S C ES A T Q S -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif EGGFQGRPNKLPDVCYSFWV MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------------------- BET2_YEAST 222 2.96e-23 GWWLCERQLP EGGLNGRPSKLPDVCYSWWV LSSLAIIGRL PFTB_RAT 285 8.74e-23 QWVTSRQMRF EGGFQGRCNKLVDGCYSFWQ AGLLPLLHRA RATRABGERB 226 4.66e-22 GWWLCERQLP SGGLNGRPEKLPDVCYSWWV LASLKIIGRL RAM1_YEAST 295 7.69e-22 EWSSARQLQE ERGFCGRSNKLVDGCYSFWV GGSAAILEAF CAL1_YEAST 274 6.15e-20 ELNASYDQSD DGGFQGRENKFADTCYAFWC LNSLHLLTKD -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif EGGFQGRPNKLPDVCYSFWV MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- BET2_YEAST 3e-23 221_[1]_84 PFTB_RAT 8.7e-23 284_[1]_133 RATRABGERB 4.7e-22 225_[1]_86 RAM1_YEAST 7.7e-22 294_[1]_117 CAL1_YEAST 6.1e-20 273_[1]_83 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif EGGFQGRPNKLPDVCYSFWV MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF EGGFQGRPNKLPDVCYSFWV width=20 seqs=5 BET2_YEAST ( 222) EGGLNGRPSKLPDVCYSWWV 1 PFTB_RAT ( 285) EGGFQGRCNKLVDGCYSFWQ 1 RATRABGERB ( 226) SGGLNGRPEKLPDVCYSWWV 1 RAM1_YEAST ( 295) ERGFCGRSNKLVDGCYSFWV 1 CAL1_YEAST ( 274) DGGFQGRENKFADTCYAFWC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif EGGFQGRPNKLPDVCYSFWV MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 20 w= 20 n= 1805 bayes= 8.49185 E= 2.3e-030 -174 -549 101 341 -468 -299 -249 -379 -137 -418 -292 -106 -278 -80 -220 24 -207 -314 -499 -405 -159 -414 -264 -305 -433 350 -327 -413 -255 -492 -331 -164 -347 -318 10 -242 -294 -356 -392 -408 -176 -427 -286 -332 -447 358 -350 -433 -298 -511 -353 -188 -360 -351 -277 -261 -315 -375 -406 -425 -295 -345 -493 -448 386 -479 -353 -101 -421 103 -36 -379 -389 -380 -389 -376 -313 -158 -218 -95 -108 135 -103 -92 -294 -198 -86 -250 -50 -292 -163 312 -221 296 -75 -115 -99 -213 -328 -256 -176 -427 -286 -332 -447 358 -350 -433 -298 -511 -353 -188 -360 -351 -277 -261 -315 -375 -406 -425 -313 -372 -445 -422 -458 -408 -222 -384 -97 -421 -338 -267 -326 -213 447 -368 -328 -436 -331 -424 -63 97 -195 61 -293 -240 -195 -245 -109 -282 -182 -111 361 -114 -134 40 -105 -195 -363 -300 -188 -396 -78 72 -356 -209 -114 -319 -131 -393 -266 416 -262 -129 -176 44 -137 -306 -374 -308 -318 -451 -472 -400 -523 -459 -377 -378 416 -489 -351 -290 -406 -335 -3 -426 -332 -427 -439 -479 -275 -363 -497 -397 107 -473 -349 -47 -357 273 40 -362 -358 -288 -300 -390 -255 -107 -288 -248 110 -266 -305 -241 -261 -248 -272 -112 -216 -236 -143 -212 334 -208 -214 -157 -116 217 -356 -320 -291 -459 383 -92 -417 -370 -283 -390 -349 -461 -350 -37 -416 -318 -335 -325 -328 -362 -427 -393 -22 -224 -301 -251 -224 200 -264 -74 -218 -202 -97 -170 -249 -214 -211 -129 165 242 -315 -275 -344 470 -543 -486 -480 -544 -495 -404 -511 -506 -366 -443 -508 -491 -440 -470 -354 -442 -579 -559 -337 -420 -443 -429 -10 -430 -166 -333 -382 -337 -272 -310 -395 -352 -334 -376 -351 -327 -146 441 113 -235 -329 -333 -350 -220 -330 -332 -274 -391 -248 -138 -259 -279 -251 313 70 -257 -398 -367 -354 -384 -477 -454 367 -462 -176 -258 -400 -236 -195 -305 -405 -341 -343 -378 -346 -274 394 67 -365 -421 -423 -406 -135 -423 -374 -380 -369 -284 -257 -332 -414 -342 -312 -415 -356 -331 562 -179 -53 46 -338 -273 -214 -323 -266 26 -237 -176 -88 -237 -267 39 -210 -243 -90 346 -328 -301 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif EGGFQGRPNKLPDVCYSFWV MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 20 w= 20 nsites= 5 E= 2.3e-030 0.000000 0.000000 0.200000 0.600000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.200000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.800000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.200000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.600000 0.000000 0.000000 0.000000 0.000000 0.400000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.200000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.400000 0.000000 0.400000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.200000 0.000000 0.200000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.400000 0.000000 0.000000 0.200000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.200000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.600000 0.000000 0.000000 0.000000 0.200000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.200000 0.000000 0.000000 0.000000 0.000000 0.800000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.200000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.400000 0.000000 0.000000 0.000000 0.000000 0.400000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.400000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.200000 0.400000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.200000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.800000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.600000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.400000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.200000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.200000 0.000000 0.000000 0.000000 0.600000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif EGGFQGRPNKLPDVCYSFWV MEME-1 regular expression -------------------------------------------------------------------------------- [EDS][GR]G[FL][NQC]GR[PCES][NES]K[LF][PVA]D[GVT]CY[SA][FW]W[VCQ] -------------------------------------------------------------------------------- Time 0.16 secs. ******************************************************************************** ******************************************************************************** MOTIF CQDEETGGLSDKPGEEVDFYHTCFGLAGL MEME-2 width = 29 sites = 5 llr = 295 E-value = 5.7e-016 ******************************************************************************** -------------------------------------------------------------------------------- Motif CQDEETGGLSDKPGEEVDFYHTCFGLAGL MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::::2:::2::::2:2:::::::::62: pos.-specific C 82:2::::::::::::::::::4:4:::: probability D ::4:::::::8:2:22:a::::::::::: matrix E ::244::::::::422::::::::::::: F ::::::::4:::::::::44:::4::::: G ::::::8a:::::6::::::::::6::8: H :::::::::::::::2::::a:::::::: I ::::::::2::::::::::::::::2::: K ::2222::::24::2:::::::::::::: L ::::2:::42::::::::2:::22:42:a M :::::::::::::::2::::::::::::: N :::::::::::2::2:::::::2:::::: P ::::2:2:::::8:::::2:::::::::: Q :82::2::::::::::::::::::::::: R :::::::::2:4::::2:::::::::::: S :::::::::4:::::22::::2:::22:: T 2::2:4:::::::::::::::8::::::: V ::::::::::::::::4:2:::2::2::: W ::::::::::::::::::::::::::::: Y :::::::::::::::::::6:::4::::: bits 5.8 5.2 * 4.6 * 4.0 ** * * * Relative 3.5 ** ** * * * *** Entropy 2.9 ** ** **** * *** ** ** (85.0 bits) 2.3 ********* **** ********** *** 1.7 ***************************** 1.2 ***************************** 0.6 ***************************** 0.0 ----------------------------- Multilevel CQDEETGGFSDKPGADVDFYHTCFGLAGL consensus TCECKAP LAKRDEDEA LF SLYCILA sequence KKLK IL N EHR P NL SS QTPQ R KMS V V V NS -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CQDEETGGLSDKPGEEVDFYHTCFGLAGL MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ----------------------------- RATRABGERB 270 5.81e-30 REKLRSFILA CQDEETGGFADRPGDMVDPFHTLFGIAGL SLLGEEQIKP BET2_YEAST 266 4.98e-28 YEKLTEFILK CQDEKKGGISDRPENEVDVFHTVFGVAGL SLMGYDNLVP RAM1_YEAST 343 1.75e-25 HALRDYILYC CQEKEQPGLRDKPGAHSDFYHTNYCLLGL AVAESSYSCT PFTB_RAT 342 1.84e-24 QQALQEYILM CCQCPAGGLLDKPGKSRDFYHTCYCLSGL SIAQHFGSGA CAL1_YEAST 321 7.81e-18 ELVTNYLLDR TQKTLTGGFSKNDEEDADLYHSCLGSAAL ALIEGKFNGE -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CQDEETGGLSDKPGEEVDFYHTCFGLAGL MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- RATRABGERB 5.8e-30 269_[2]_33 BET2_YEAST 5e-28 265_[2]_31 RAM1_YEAST 1.8e-25 342_[2]_60 PFTB_RAT 1.8e-24 341_[2]_67 CAL1_YEAST 7.8e-18 320_[2]_27 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CQDEETGGLSDKPGEEVDFYHTCFGLAGL MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CQDEETGGLSDKPGEEVDFYHTCFGLAGL width=29 seqs=5 RATRABGERB ( 270) CQDEETGGFADRPGDMVDPFHTLFGIAGL 1 BET2_YEAST ( 266) CQDEKKGGISDRPENEVDVFHTVFGVAGL 1 RAM1_YEAST ( 343) CQEKEQPGLRDKPGAHSDFYHTNYCLLGL 1 PFTB_RAT ( 342) CCQCPAGGLLDKPGKSRDFYHTCYCLSGL 1 CAL1_YEAST ( 321) TQKTLTGGFSKNDEEDADLYHSCLGSAAL 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CQDEETGGLSDKPGEEVDFYHTCFGLAGL MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 20 w= 29 n= 1760 bayes= 8.45533 E= 5.7e-016 -317 468 -536 -480 -473 -515 -489 -393 -502 -496 -358 -431 -496 -481 -434 -439 -202 -421 -572 -551 -201 -28 -352 -110 -388 -392 -45 -323 -218 -293 -130 -177 -280 435 -152 -273 -235 -303 -327 -386 -101 -461 226 200 -366 -252 -171 -296 142 -325 -195 -63 -210 179 -106 -160 -127 -232 -399 -310 -39 127 -86 197 -232 -186 -81 -180 159 -220 -89 1 -155 14 6 -70 148 -136 -275 -194 -54 -354 -66 215 -262 -208 -104 -209 154 -4 -113 -26 160 9 -17 -97 -59 -161 -303 -220 109 -318 -107 -17 -246 -198 -89 -192 159 -232 -97 -10 -164 171 12 -63 240 -146 -282 -207 -155 -406 -271 -314 -437 348 -337 -418 -283 -497 -338 -171 32 -333 -265 -240 -290 -356 -399 -415 -176 -427 -286 -332 -447 358 -350 -433 -298 -511 -353 -188 -360 -351 -277 -261 -315 -375 -406 -425 -253 -339 -527 -442 287 -470 -372 161 -402 180 36 -379 -390 -333 -355 -390 -242 -73 -270 -215 145 -250 -160 -77 -208 -199 -130 -136 -22 -8 -77 -48 -178 -48 140 187 10 -98 -272 -203 -261 -452 373 -63 -408 -335 -255 -377 -56 -443 -329 -19 -380 -253 -275 -283 -285 -345 -421 -376 -190 -410 -273 -160 -401 -304 -150 -302 299 -322 -201 170 -285 -45 295 -221 -166 -272 -344 -309 -106 -385 26 -217 -346 -298 -272 -305 -205 -329 -260 -201 420 -198 -216 -191 -175 -255 -429 -395 -148 -419 -141 170 -426 310 -269 -390 -187 -446 -308 -100 -301 -180 -220 -209 -227 -325 -415 -386 110 -357 131 152 -267 -184 -93 -229 149 -257 -123 190 -164 6 -33 -82 -53 -176 -307 -218 -36 -329 116 133 -230 -179 182 -199 27 -230 211 15 -150 22 -11 73 -33 -150 -277 -173 155 -224 -224 -142 -204 -219 -182 -47 -94 -184 -75 -118 -213 -113 114 44 -57 264 -287 -237 -291 -459 383 -92 -417 -370 -283 -390 -349 -461 -350 -37 -416 -318 -335 -325 -328 -362 -427 -393 -142 -249 -385 -310 340 -341 -256 -34 -271 38 -12 -245 90 -255 -251 -241 -141 97 -205 -69 -229 -329 -362 -321 283 -383 -55 -236 -290 -245 -169 -229 -322 -266 -248 -273 -258 -228 -63 367 -334 -407 -306 -333 -257 -386 482 -415 -346 -379 -261 -89 -344 -90 -175 -295 -273 -364 -300 -124 -145 -275 -320 -331 -332 -339 -304 -212 -239 -361 -157 -102 -300 -226 -230 94 393 -169 -371 -379 -60 275 -318 -233 -106 -266 -205 27 -185 55 20 163 -241 -176 -173 -173 -55 163 -215 -165 -203 -306 -347 -303 308 -370 -62 -189 -277 -4 -126 -230 -304 -265 -243 -256 -239 -192 -85 313 -80 268 -333 -367 -417 307 -368 -385 -337 -457 -324 -215 -317 -342 -309 -180 -204 -287 -426 -424 -119 -241 -381 -299 -128 -328 -266 230 -251 149 20 -228 -287 -233 -229 16 -104 153 -253 -210 344 -163 -332 -265 -268 -160 -306 -203 -245 -82 -141 -225 -319 -251 -233 30 -118 -77 -328 -328 5 -385 -271 -313 -431 348 -336 -409 -281 -490 -328 -170 -338 -330 -260 -223 -272 -339 -394 -412 -288 -378 -491 -401 -150 -464 -371 -73 -359 290 14 -369 -362 -300 -305 -397 -271 -125 -326 -314 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CQDEETGGLSDKPGEEVDFYHTCFGLAGL MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 20 w= 29 nsites= 5 E= 5.7e-016 0.000000 0.800000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.200000 0.000000 0.000000 0.000000 0.000000 0.200000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.800000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.400000 0.200000 0.000000 0.000000 0.000000 0.000000 0.200000 0.000000 0.000000 0.000000 0.000000 0.200000 0.000000 0.000000 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0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.600000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.200000 0.800000 0.000000 0.000000 0.000000 0.000000 0.400000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.200000 0.000000 0.200000 0.000000 0.000000 0.000000 0.000000 0.000000 0.200000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.400000 0.000000 0.000000 0.000000 0.000000 0.200000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.400000 0.000000 0.400000 0.000000 0.000000 0.000000 0.600000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.200000 0.000000 0.400000 0.000000 0.000000 0.000000 0.000000 0.000000 0.200000 0.000000 0.200000 0.000000 0.000000 0.600000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.200000 0.000000 0.000000 0.000000 0.000000 0.000000 0.200000 0.000000 0.000000 0.000000 0.000000 0.200000 0.000000 0.000000 0.000000 0.000000 0.800000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CQDEETGGLSDKPGEEVDFYHTCFGLAGL MEME-2 regular expression -------------------------------------------------------------------------------- [CT][QC][DEKQ][ECKT][EKLP][TAKQ][GP]G[FLI][SALR][DK][KRN][PD][GE][ADEKN][DEHMS][VARS]D[FLPV][YF]H[TS][CLNV][FYL][GC][LISV][ALS][GA]L -------------------------------------------------------------------------------- Time 0.32 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- RAM1_YEAST 2.12e-39 294_[1(7.69e-22)]_28_[2(1.75e-25)]_\ 60 PFTB_RAT 2.60e-39 131_[2(8.95e-06)]_70_[2(5.06e-07)]_\ 25_[1(8.74e-23)]_37_[2(1.84e-24)]_67 BET2_YEAST 1.40e-43 66_[2(7.75e-06)]_27_[1(4.45e-05)]_\ 28_[1(4.12e-05)]_31_[1(2.96e-23)]_24_[2(4.98e-28)]_31 RATRABGERB 2.71e-44 76_[2(5.22e-05)]_24_[1(5.77e-05)]_\ 76_[1(4.66e-22)]_24_[2(5.81e-30)]_33 CAL1_YEAST 4.35e-30 273_[1(6.15e-20)]_27_[2(7.81e-18)]_\ 27 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (2) found. ******************************************************************************** CPU: Timothys-Mac-Mini.local ********************************************************************************