******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.4.0 (Release date: Tue Mar 9 17:38:20 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= common/adh.s CONTROL SEQUENCES= Primary sequences shuffled preserving 2-mers ALPHABET= ACDEFGHIKLMNPQRSTVWY Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ 2BHD_STREX 1.0000 255 3BHD_COMTE 1.0000 253 ADH_DROME 1.0000 255 AP27_MOUSE 1.0000 244 BA72_EUBSP 1.0000 249 BDH_HUMAN 1.0000 343 BPHB_PSEPS 1.0000 275 BUDC_KLETE 1.0000 241 DHES_HUMAN 1.0000 327 DHGB_BACME 1.0000 262 DHII_HUMAN 1.0000 292 DHMA_FLAS1 1.0000 270 ENTA_ECOLI 1.0000 248 FIXR_BRAJA 1.0000 278 GUTD_ECOLI 1.0000 259 HDE_CANTR 1.0000 906 HDHA_ECOLI 1.0000 255 LIGD_PSEPA 1.0000 305 NODG_RHIME 1.0000 245 RIDH_KLEAE 1.0000 249 YINL_LISMO 1.0000 248 YRTP_BACSU 1.0000 238 CSGA_MYXXA 1.0000 166 DHB2_HUMAN 1.0000 387 DHB3_HUMAN 1.0000 310 DHCA_HUMAN 1.0000 276 FABI_ECOLI 1.0000 262 FVT1_HUMAN 1.0000 332 HMTR_LEIMA 1.0000 287 MAS1_AGRRA 1.0000 476 PCR_PEA 1.0000 399 RFBB_NEIGO 1.0000 346 YURA_MYXXA 1.0000 258 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -nsites 27 common/adh.s -oc results/meme33 -mod anr -protein -nmotifs 2 -objfun se -w 12 -hsfrac 0.6 -shuf 2 -nostatus -mpi model: mod= anr nmotifs= 2 evt= inf objective function: em= Selective mHG starts= log likelihood ratio (LLR) width: minw= 12 maxw= 12 nsites: minsites= 27 maxsites= 27 wnsites= 0.8 theta: spmap= pam spfuzz= 120 em: prior= megap b= 49975 maxiter= 50 distance= 1e-05 data: n= 9996 N= 33 sample: seed= 0 hsfrac= 0.6 searchsize= 9996 norand= no csites= -1 Dirichlet mixture priors file: prior30.plib Letter frequencies in dataset: A 0.111 C 0.0121 D 0.0502 E 0.0553 F 0.0359 G 0.0898 H 0.0182 I 0.0566 K 0.0518 L 0.0919 M 0.0272 N 0.0405 P 0.0405 Q 0.0294 R 0.0494 S 0.0637 T 0.0565 V 0.083 W 0.0095 Y 0.027 Background letter frequencies (from file dataset with add-one prior applied): A 0.111 C 0.0122 D 0.0502 E 0.0553 F 0.0359 G 0.0898 H 0.0183 I 0.0566 K 0.0518 L 0.0919 M 0.0273 N 0.0405 P 0.0405 Q 0.0295 R 0.0494 S 0.0637 T 0.0565 V 0.083 W 0.00959 Y 0.0271 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GGVDVLVNNAGI MEME-1 width = 12 sites = 27 llr = 391 p-value = 5.9e-001 E-value = 5.9e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGVDVLVNNAGI MEME-1 Description -------------------------------------------------------------------------------- Simplified A ::1::::::8:: pos.-specific C ::::::::1:1: probability D :::4:::::::: matrix E 1::::::::::1 F :::::::::::: G 53::::::216: H :::1:::::::: I ::1:113::::3 K :11::::1:::2 L 1:2::51::::: M :::::1:::::1 N :::1:::55::: P :1:::::::::: Q 1::1::::1::: R :1:::::::::: S 1::::::1::11 T :211:::1:::: V ::3:515::::1 W :::::::::::: Y :::::::::::: bits 6.7 6.0 5.4 4.7 Relative 4.0 Entropy 3.4 (20.9 bits) 2.7 ** 2.0 ***** 1.3 ************ 0.7 ************ 0.0 ------------ Multilevel GGVDVLVNNAGI consensus L I sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGVDVLVNNAGI MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ------------ DHCA_HUMAN 81 3.86e-13 ALRDFLRKEY GGLDVLVNNAGI AFKVADPTPF 3BHD_COMTE 79 1.74e-12 LVMAAVQRRL GTLNVLVNNAGI LLPGDMETGR HDE_CANTR 90 5.35e-12 KIVETAVKNF GTVHVIINNAGI LRDASMKKMT BA72_EUBSP 84 6.25e-12 AAVGQVAQKY GRLDVMINNAGI TSNNVFSRVS CSGA_MYXXA 11 9.86e-12 MRAFATNVCT GPVDVLINNAGV SGLWCALGDV HDE_CANTR 394 9.86e-12 AIIKNVIDKY GTIDILVNNAGI LRDRSFAKMS DHGB_BACME 85 4.50e-11 NLVQSAIKEF GKLDVMINNAGM ENPVSSHEMS BUDC_KLETE 78 8.44e-11 AAVEQARKAL GGFNVIVNNAGI APSTPIESIT NODG_RHIME 79 9.52e-11 ALGQRAEADL EGVDILVNNAGI TKDGLFLHMA YRTP_BACSU 82 1.36e-10 QAVAQVKEQL GDIDILINNAGI SKFGGFLDLS ADH_DROME 84 1.93e-10 KLLKTIFAQL KTVDVLINGAGI LDDHQIERTI FVT1_HUMAN 113 2.72e-10 NVIKQAQEKL GPVDMLVNCAGM AVSGKFEDLE HMTR_LEIMA 101 4.24e-10 ELVAACYTHW GRCDVLVNNASS FYPTPLLRND HDHA_ECOLI 87 1.34e-09 ALADFAISKL GKVDILVNNAGG GGPKPFDMPM ENTA_ECOLI 4 7.75e-08 MDF SGKNVWVTGAGK GIGYATALAF DHII_HUMAN 33 1.27e-06 ANEEFRPEML QGKKVIVTGASK GIGREMAYHL AP27_MOUSE 6 2.01e-06 MKLNF SGLRALVTGAGK GIGRDTVKAL FVT1_HUMAN 31 4.88e-05 PLISPKPLAL PGAHVVVTGGSS GIGKCIAIEC CSGA_MYXXA 110 5.14e-05 RSMSTDLRPE GFVTVLLHPGWV QTDMGGPDAT FVT1_HUMAN 99 5.70e-05 CISVDVSQDY NQVENVIKQAQE KLGPVDMLVN FVT1_HUMAN 166 6.65e-05 VITTMKERRV GRIVFVSSQAGQ LGLFGFTAYS DHB3_HUMAN 239 7.37e-05 YAVSTAMTKY LNTNVITKTADE FVKESLNYVT DHII_HUMAN 262 7.37e-05 RQEEVYYDSS LWTTLLIRNPCR KILEFLYSTS MAS1_AGRRA 73 1.40e-04 SRSSTSSAMV QPISTRKKCTCK VKNIGVCRAP BA72_EUBSP 125 1.55e-04 INVTGVFNGA WCAYQCMKDAKK GVIINTASVT DHII_HUMAN 69 2.26e-04 AHVVVTARSK ETLQKVVSHCLE LGAASAHYIA ADH_DROME 210 5.32e-04 EPQVAEKLLA HPTQPSLACAEN FVKAIELNQN -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGVDVLVNNAGI MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- DHCA_HUMAN 3.9e-13 80_[1]_184 3BHD_COMTE 1.7e-12 78_[1]_163 HDE_CANTR 9.9e-12 89_[1]_292_[1]_501 BA72_EUBSP 6.3e-12 83_[1]_29_[1]_113 CSGA_MYXXA 5.1e-05 10_[1]_87_[1]_45 DHGB_BACME 4.5e-11 84_[1]_166 BUDC_KLETE 8.4e-11 77_[1]_152 NODG_RHIME 9.5e-11 78_[1]_155 YRTP_BACSU 1.4e-10 81_[1]_145 ADH_DROME 1.9e-10 83_[1]_114_[1]_34 FVT1_HUMAN 4.9e-05 30_[1]_56_[1]_2_[1]_41_[1]_155 HMTR_LEIMA 4.2e-10 100_[1]_175 HDHA_ECOLI 1.3e-09 86_[1]_157 ENTA_ECOLI 7.8e-08 3_[1]_233 DHII_HUMAN 0.00023 32_[1]_24_[1]_181_[1]_19 AP27_MOUSE 2e-06 5_[1]_227 DHB3_HUMAN 7.4e-05 238_[1]_60 MAS1_AGRRA 0.00014 72_[1]_392 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGVDVLVNNAGI MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGVDVLVNNAGI width=12 seqs=27 DHCA_HUMAN ( 81) GGLDVLVNNAGI 1 3BHD_COMTE ( 79) GTLNVLVNNAGI 1 HDE_CANTR ( 90) GTVHVIINNAGI 1 BA72_EUBSP ( 84) GRLDVMINNAGI 1 CSGA_MYXXA ( 11) GPVDVLINNAGV 1 HDE_CANTR ( 394) GTIDILVNNAGI 1 DHGB_BACME ( 85) GKLDVMINNAGM 1 BUDC_KLETE ( 78) GGFNVIVNNAGI 1 NODG_RHIME ( 79) EGVDILVNNAGI 1 YRTP_BACSU ( 82) GDIDILINNAGI 1 ADH_DROME ( 84) KTVDVLINGAGI 1 FVT1_HUMAN ( 113) GPVDMLVNCAGM 1 HMTR_LEIMA ( 101) GRCDVLVNNASS 1 HDHA_ECOLI ( 87) GKVDILVNNAGG 1 ENTA_ECOLI ( 4) SGKNVWVTGAGK 1 DHII_HUMAN ( 33) QGKKVIVTGASK 1 AP27_MOUSE ( 6) SGLRALVTGAGK 1 FVT1_HUMAN ( 31) PGAHVVVTGGSS 1 CSGA_MYXXA ( 110) GFVTVLLHPGWV 1 FVT1_HUMAN ( 99) NQVENVIKQAQE 1 FVT1_HUMAN ( 166) GRIVFVSSQAGQ 1 DHB3_HUMAN ( 239) LNTNVITKTADE 1 DHII_HUMAN ( 262) LWTTLLIRNPCR 1 MAS1_AGRRA ( 73) QPISTRKKCTCK 1 BA72_EUBSP ( 125) WCAYQCMKDAKK 1 DHII_HUMAN ( 69) ETLQKVVSHCLE 1 ADH_DROME ( 210) HPTQPSLACAEN 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGVDVLVNNAGI MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 20 w= 12 n= 9632 bayes= 8.47468 E= 5.9e-001 -250 -299 -189 52 -340 224 94 -345 3 -50 -265 5 -27 131 -166 25 -194 -337 159 -264 -246 130 -24 -115 -17 121 -127 -337 68 -324 -257 8 156 67 104 -163 148 -330 162 -257 -55 150 -472 -395 13 -437 -278 136 34 119 -147 -350 -383 -297 -357 -291 88 172 -246 -236 -246 -296 270 -5 -334 -335 182 -339 8 -325 -258 166 -274 135 -14 -38 36 -117 -309 29 -137 -118 -359 -324 -117 -435 -257 70 -172 -163 -72 -151 -142 -106 -305 -309 -101 303 -331 -371 -324 126 -480 -399 -196 -465 -294 116 -370 245 124 -372 -385 -292 -71 -95 -253 62 152 -257 -270 -166 -442 -383 -225 -446 -285 224 -80 -25 34 -355 -375 -306 -353 -94 -58 247 -270 -263 -141 -368 -220 -204 -430 -377 99 -431 149 -415 -354 349 -357 -143 -15 24 124 -426 -390 -339 -451 305 -6 -287 -544 96 101 -610 -311 -597 -556 349 -19 128 -393 -255 -55 -604 -529 -428 280 124 -430 -386 -364 -63 -365 -352 -388 -366 -304 -378 -73 -348 -389 -134 -82 -240 -351 -401 -301 167 -94 -108 -442 296 -275 -455 -97 -206 -394 -234 -383 -33 -302 7 -342 -445 103 -380 -248 -292 -190 99 -330 -127 -131 221 170 -320 118 7 -277 66 -14 28 -189 -33 -308 -257 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGVDVLVNNAGI MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 20 w= 12 nsites= 27 E= 5.9e-001 0.000000 0.000000 0.000000 0.074074 0.000000 0.518519 0.037037 0.000000 0.037037 0.074074 0.000000 0.037037 0.037037 0.074074 0.000000 0.074074 0.000000 0.000000 0.037037 0.000000 0.000000 0.037037 0.037037 0.000000 0.037037 0.259259 0.000000 0.000000 0.074074 0.000000 0.000000 0.037037 0.148148 0.037037 0.111111 0.000000 0.185185 0.000000 0.037037 0.000000 0.074074 0.037037 0.000000 0.000000 0.037037 0.000000 0.000000 0.148148 0.074074 0.222222 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.111111 0.296296 0.000000 0.000000 0.000000 0.000000 0.407407 0.037037 0.000000 0.000000 0.074074 0.000000 0.037037 0.000000 0.000000 0.148148 0.000000 0.074074 0.037037 0.037037 0.074074 0.037037 0.000000 0.037037 0.037037 0.000000 0.000000 0.000000 0.037037 0.000000 0.000000 0.148148 0.037037 0.037037 0.037037 0.037037 0.037037 0.037037 0.000000 0.000000 0.037037 0.518519 0.000000 0.000000 0.000000 0.037037 0.000000 0.000000 0.000000 0.000000 0.000000 0.148148 0.000000 0.481481 0.074074 0.000000 0.000000 0.000000 0.037037 0.037037 0.000000 0.148148 0.037037 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.296296 0.037037 0.074074 0.037037 0.000000 0.000000 0.000000 0.000000 0.037037 0.037037 0.481481 0.000000 0.000000 0.037037 0.000000 0.000000 0.000000 0.000000 0.000000 0.037037 0.000000 0.148148 0.000000 0.000000 0.518519 0.000000 0.000000 0.037037 0.074074 0.148148 0.000000 0.000000 0.000000 0.000000 0.111111 0.037037 0.000000 0.000000 0.185185 0.037037 0.000000 0.000000 0.000000 0.000000 0.481481 0.037037 0.074074 0.000000 0.000000 0.037037 0.000000 0.000000 0.000000 0.814815 0.037037 0.000000 0.000000 0.000000 0.074074 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.037037 0.000000 0.000000 0.000000 0.037037 0.000000 0.000000 0.000000 0.000000 0.074074 0.037037 0.037037 0.000000 0.592593 0.000000 0.000000 0.037037 0.037037 0.000000 0.000000 0.000000 0.037037 0.000000 0.111111 0.000000 0.000000 0.037037 0.000000 0.000000 0.000000 0.000000 0.111111 0.000000 0.037037 0.000000 0.333333 0.185185 0.000000 0.074074 0.037037 0.000000 0.037037 0.037037 0.074074 0.000000 0.074074 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGVDVLVNNAGI MEME-1 regular expression -------------------------------------------------------------------------------- GG[VL]DVL[VI]NNAGI -------------------------------------------------------------------------------- Time 0.20 secs. ******************************************************************************** ******************************************************************************** MOTIF LEDFSRSLAVNY MEME-2 width = 12 sites = 27 llr = 323 p-value = 2.2e-002 E-value = 2.2e-002 ******************************************************************************** -------------------------------------------------------------------------------- Motif LEDFSRSLAVNY MEME-2 Description -------------------------------------------------------------------------------- Simplified A :11:1:1:2::: pos.-specific C ::::::1::::: probability D 1:2:1:::::1: matrix E :21:1:1:112: F 1::8:::1:::1 G :11::::::::: H :1:::::::1:: I 1::::::1:1:1 K :1:::2::11:: L 3:::::1511:1 M 1::::::1:::: N ::::::::::4: P :1:::::::::: Q ::::111:12:: R ::1:14::1::: S 111:212:1::: T :11:::1:1::1 V 2::::::1:2:1 W :::::::::::: Y ::::::11:::3 bits 6.7 6.0 5.4 4.7 Relative 4.0 Entropy 3.4 * (17.3 bits) 2.7 * 2.0 * * * * 1.3 * *** * *** 0.7 ************ 0.0 ------------ Multilevel LXXFXRSLAVNY consensus K E sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif LEDFSRSLAVNY MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ------------ FVT1_HUMAN 135 9.24e-09 AVSGKFEDLE VSTFERLMSINY LGSVYPSRAV DHB3_HUMAN 205 1.18e-08 YSMYSASKAF VCAFSKALQEEY KAKEVIIQVL GUTD_ECOLI 102 2.14e-08 AKAAFISDFQ LGDFDRSLQVNL VGYFLCAREF 3BHD_COMTE 101 4.72e-08 LLPGDMETGR LEDFSRLLKINT ESVFIGCQQG NODG_RHIME 159 1.84e-07 QTNYCASKAG MIGFSKSLAQEI ATRNITVNCV DHB3_HUMAN 24 3.01e-07 LLVCLACLAK CVRFSRCVLLNY YKVLPKSFLR DHB2_HUMAN 182 3.32e-07 GFPTDGELLL MTDYKQCMAVNF FGTVEVTKTF DHES_HUMAN 212 4.41e-07 EVLDRTDIHT FHRFYQYLAHSK QVFREAAQNP FABI_ECOLI 200 6.40e-07 GPIRTLAASG IKDFRKMLAHCE AVTPIRRTVT PCR_PEA 285 9.20e-07 KDSKVCNMLT MQEFHRRYHEET GITFASLYPG AP27_MOUSE 97 1.10e-06 VIMQPFLEVT KEAFDRSFSVNL RSVFQVSQMV PCR_PEA 325 1.31e-06 REHIPLFRTL FPPFQKYITKGY VSEEESGKRL HDHA_ECOLI 108 1.56e-06 GGGPKPFDMP MADFRRAYELNV FSFFHLSQLV DHII_HUMAN 190 1.56e-06 VAAYSASKFA LDGFFSSIRKEY SVSRVNVSIT ADH_DROME 98 1.70e-06 VLINGAGILD DHQIERTIAVNY TGLVNTTTAI DHII_HUMAN 133 2.38e-06 NTSLNLFHDD IHHVRKSMEVNF LSYVVLTVAA DHB3_HUMAN 288 2.59e-06 LSLIPAWAFY SGAFQRLLLTHY VAYLKLNTKV ENTA_ECOLI 32 4.57e-06 ALAFVEAGAK VTGFDQAFTQEQ YPFATEVMDV YURA_MYXXA 167 4.94e-06 ATRYSASKAF LSTFMESLRVDL RGTGVRVTCI FIXR_BRAJA 196 5.78e-06 GSAYATSKAA LASLTRELAHDY APHGIRVNAI PCR_PEA 368 6.25e-06 SGVYWSWNNA SASFENQLSQEA SDAEKARKVW AP27_MOUSE 193 6.75e-06 LTDMGKKVSA DPEFARKLKERH PLRKFAEVED 2BHD_STREX 101 9.16e-06 STGMFLETES VERFRKVVDINL TGVFIGMKTV DHCA_HUMAN 146 1.15e-05 NVSSIMSVRA LKSCSPELQQKF RSETITEEEL ENTA_ECOLI 108 1.43e-05 QTFAVNVGGA FNLFQQTMNQFR RQRGGAIVTV RFBB_NEIGO 322 2.19e-05 KIRRDLGWLP LETFESGLRKTV QWYLDNKTRR FABI_ECOLI 48 1.21e-04 TYQNDKLKGR VEEFAAQLGSDI VLQCDVAEDA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif LEDFSRSLAVNY MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- FVT1_HUMAN 9.2e-09 134_[2]_186 DHB3_HUMAN 3e-07 23_[2]_169_[2]_71_[2]_11 GUTD_ECOLI 2.1e-08 101_[2]_146 3BHD_COMTE 4.7e-08 100_[2]_141 NODG_RHIME 1.8e-07 158_[2]_75 DHB2_HUMAN 3.3e-07 181_[2]_194 DHES_HUMAN 4.4e-07 211_[2]_104 FABI_ECOLI 0.00012 47_[2]_140_[2]_51 PCR_PEA 6.3e-06 284_[2]_28_[2]_31_[2]_20 AP27_MOUSE 1.1e-06 96_[2]_84_[2]_40 HDHA_ECOLI 1.6e-06 107_[2]_136 DHII_HUMAN 1.6e-06 132_[2]_45_[2]_91 ADH_DROME 1.7e-06 97_[2]_146 ENTA_ECOLI 1.4e-05 31_[2]_64_[2]_129 YURA_MYXXA 4.9e-06 166_[2]_80 FIXR_BRAJA 5.8e-06 195_[2]_71 2BHD_STREX 9.2e-06 100_[2]_143 DHCA_HUMAN 1.1e-05 145_[2]_119 RFBB_NEIGO 2.2e-05 321_[2]_13 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif LEDFSRSLAVNY MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF LEDFSRSLAVNY width=12 seqs=27 FVT1_HUMAN ( 135) VSTFERLMSINY 1 DHB3_HUMAN ( 205) VCAFSKALQEEY 1 GUTD_ECOLI ( 102) LGDFDRSLQVNL 1 3BHD_COMTE ( 101) LEDFSRLLKINT 1 NODG_RHIME ( 159) MIGFSKSLAQEI 1 DHB3_HUMAN ( 24) CVRFSRCVLLNY 1 DHB2_HUMAN ( 182) MTDYKQCMAVNF 1 DHES_HUMAN ( 212) FHRFYQYLAHSK 1 FABI_ECOLI ( 200) IKDFRKMLAHCE 1 PCR_PEA ( 285) MQEFHRRYHEET 1 AP27_MOUSE ( 97) KEAFDRSFSVNL 1 PCR_PEA ( 325) FPPFQKYITKGY 1 HDHA_ECOLI ( 108) MADFRRAYELNV 1 DHII_HUMAN ( 190) LDGFFSSIRKEY 1 ADH_DROME ( 98) DHQIERTIAVNY 1 DHII_HUMAN ( 133) IHHVRKSMEVNF 1 DHB3_HUMAN ( 288) SGAFQRLLLTHY 1 ENTA_ECOLI ( 32) VTGFDQAFTQEQ 1 YURA_MYXXA ( 167) LSTFMESLRVDL 1 FIXR_BRAJA ( 196) LASLTRELAHDY 1 PCR_PEA ( 368) SASFENQLSQEA 1 AP27_MOUSE ( 193) DPEFARKLKERH 1 2BHD_STREX ( 101) VERFRKVVDINL 1 DHCA_HUMAN ( 146) LKSCSPELQQKF 1 ENTA_ECOLI ( 108) FNLFQQTMNQFR 1 RFBB_NEIGO ( 322) LETFESGLRKTV 1 FABI_ECOLI ( 48) VEEFAAQLGSDI 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif LEDFSRSLAVNY MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 20 w= 12 n= 9632 bayes= 8.47468 E= 2.2e-002 -291 150 33 -393 149 -436 -277 57 -57 139 228 -349 -382 -295 -355 13 -222 112 -245 -234 -7 130 -24 159 -333 -45 234 -74 69 -324 -257 8 63 67 -158 28 36 -117 -308 -256 -7 -296 164 100 -333 7 98 -338 -97 -127 -257 -147 -23 67 104 73 83 -330 -309 -256 -413 2 -448 -435 455 -517 -362 -158 -442 -137 -231 -422 -391 -416 -463 -334 -416 -219 -150 6 -53 -296 98 133 -17 -335 98 -337 8 -324 28 -147 -273 181 140 135 -36 -330 -308 29 -132 -335 -237 -20 -383 -378 -160 -378 201 -361 -297 2 -23 220 282 24 -231 -372 -343 -298 -7 227 -189 55 -325 -127 -130 -321 6 6 29 -152 -275 134 -15 158 36 -114 -305 119 -492 -338 -631 -547 90 -640 -442 88 -522 257 225 -541 -515 -411 -492 -504 -418 -23 -352 120 78 -296 -24 57 -333 -127 98 -337 69 -47 -257 8 -273 181 104 73 36 -330 -308 -256 -255 -261 -213 96 -298 -352 235 76 107 -38 -228 -173 -290 244 -181 -44 -37 116 -294 -253 -252 131 100 183 -16 -126 98 -345 6 -332 -264 290 -278 -74 -15 -38 -37 -337 -315 -262 -162 -152 -291 -103 189 -384 113 -27 -96 -1 -197 -253 -291 -29 -91 -207 -32 -75 -50 387 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif LEDFSRSLAVNY MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 20 w= 12 nsites= 27 E= 2.2e-002 0.000000 0.037037 0.074074 0.000000 0.111111 0.000000 0.000000 0.074074 0.037037 0.259259 0.148148 0.000000 0.000000 0.000000 0.000000 0.074074 0.000000 0.185185 0.000000 0.000000 0.111111 0.037037 0.037037 0.185185 0.000000 0.074074 0.111111 0.037037 0.074074 0.000000 0.000000 0.037037 0.074074 0.037037 0.000000 0.074074 0.074074 0.037037 0.000000 0.000000 0.111111 0.000000 0.185185 0.111111 0.000000 0.111111 0.037037 0.000000 0.000000 0.037037 0.000000 0.000000 0.037037 0.037037 0.111111 0.111111 0.111111 0.000000 0.000000 0.000000 0.000000 0.037037 0.000000 0.000000 0.814815 0.000000 0.000000 0.037037 0.000000 0.037037 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.037037 0.000000 0.037037 0.074074 0.000000 0.111111 0.148148 0.037037 0.000000 0.037037 0.000000 0.037037 0.000000 0.037037 0.000000 0.000000 0.111111 0.148148 0.185185 0.037037 0.000000 0.000000 0.037037 0.037037 0.000000 0.000000 0.037037 0.000000 0.000000 0.000000 0.000000 0.222222 0.000000 0.000000 0.037037 0.037037 0.148148 0.407407 0.074074 0.000000 0.000000 0.000000 0.000000 0.111111 0.074074 0.000000 0.074074 0.000000 0.037037 0.000000 0.000000 0.037037 0.111111 0.037037 0.000000 0.000000 0.074074 0.037037 0.222222 0.074074 0.037037 0.000000 0.074074 0.000000 0.000000 0.000000 0.000000 0.074074 0.000000 0.000000 0.111111 0.000000 0.518519 0.148148 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.074074 0.000000 0.074074 0.222222 0.000000 0.037037 0.074074 0.000000 0.037037 0.037037 0.000000 0.074074 0.074074 0.000000 0.037037 0.000000 0.111111 0.111111 0.111111 0.074074 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.111111 0.000000 0.000000 0.111111 0.111111 0.111111 0.074074 0.000000 0.000000 0.000000 0.185185 0.000000 0.037037 0.037037 0.222222 0.000000 0.000000 0.000000 0.037037 0.111111 0.222222 0.037037 0.037037 0.037037 0.000000 0.037037 0.000000 0.000000 0.370370 0.000000 0.000000 0.037037 0.037037 0.037037 0.000000 0.000000 0.000000 0.037037 0.000000 0.000000 0.037037 0.111111 0.000000 0.037037 0.074074 0.037037 0.148148 0.000000 0.000000 0.000000 0.037037 0.037037 0.000000 0.074074 0.074074 0.000000 0.296296 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif LEDFSRSLAVNY MEME-2 regular expression -------------------------------------------------------------------------------- LXXFX[RK]SLAV[NE]Y -------------------------------------------------------------------------------- Time 0.36 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 2BHD_STREX 4.84e-07 78_[1(4.82e-08)]_10_[2(9.16e-06)]_\ 143 3BHD_COMTE 1.63e-13 78_[1(1.74e-12)]_10_[2(4.72e-08)]_\ 141 ADH_DROME 5.01e-10 83_[1(1.93e-10)]_2_[2(1.70e-06)]_\ 146 AP27_MOUSE 2.03e-06 5_[1(2.01e-06)]_57_[1(2.76e-06)]_10_\ [2(1.10e-06)]_84_[2(6.75e-06)]_40 BA72_EUBSP 1.44e-08 83_[1(6.25e-12)]_154 BDH_HUMAN 2.37e-03 53_[1(8.15e-05)]_70_[1(1.84e-05)]_\ 196 BPHB_PSEPS 3.33e-05 76_[1(2.41e-07)]_187 BUDC_KLETE 3.36e-07 [1(8.57e-05)]_65_[1(8.44e-11)]_152 DHES_HUMAN 3.31e-07 [1(6.32e-05)]_69_[1(3.98e-07)]_118_\ [2(4.41e-07)]_104 DHGB_BACME 1.67e-08 84_[1(4.50e-11)]_166 DHII_HUMAN 2.61e-06 32_[1(1.27e-06)]_88_[2(2.38e-06)]_\ 45_[2(1.56e-06)]_60_[1(7.37e-05)]_19 DHMA_FLAS1 9.32e-03 195_[1(3.75e-05)]_63 ENTA_ECOLI 3.72e-07 3_[1(7.75e-08)]_16_[2(4.57e-06)]_27_\ [1(1.66e-06)]_10_[2(6.04e-05)]_3_[2(1.43e-05)]_129 FIXR_BRAJA 2.55e-06 109_[1(3.71e-07)]_74_[2(5.78e-06)]_\ 71 GUTD_ECOLI 2.62e-07 79_[1(1.04e-05)]_10_[2(2.14e-08)]_\ 146 HDE_CANTR 6.14e-08 6_[1(1.84e-05)]_71_[1(5.35e-12)]_\ 219_[1(1.74e-05)]_61_[1(9.86e-12)]_501 HDHA_ECOLI 2.96e-09 86_[1(1.34e-09)]_9_[2(1.56e-06)]_\ 136 LIGD_PSEPA 3.84e-01 305 NODG_RHIME 2.75e-11 78_[1(9.52e-11)]_68_[2(1.84e-07)]_\ 75 RIDH_KLEAE 9.55e-02 249 YINL_LISMO 1.33e-02 80_[1(1.65e-05)]_156 YRTP_BACSU 3.76e-07 81_[1(1.36e-10)]_145 CSGA_MYXXA 1.28e-08 10_[1(9.86e-12)]_87_[1(5.14e-05)]_\ 45 DHB2_HUMAN 1.85e-05 158_[1(2.71e-05)]_11_[2(3.32e-07)]_\ 194 DHB3_HUMAN 7.47e-07 23_[2(3.01e-07)]_87_[1(3.95e-05)]_\ 70_[2(1.18e-08)]_22_[1(7.37e-05)]_37_[2(2.59e-06)]_11 DHCA_HUMAN 9.23e-12 80_[1(3.86e-13)]_53_[2(1.15e-05)]_\ 119 FABI_ECOLI 3.64e-04 199_[2(6.40e-07)]_51 FVT1_HUMAN 7.77e-12 30_[1(4.88e-05)]_56_[1(5.70e-05)]_2_\ [1(2.72e-10)]_10_[2(9.24e-09)]_19_[1(6.65e-05)]_155 HMTR_LEIMA 4.89e-07 100_[1(4.24e-10)]_175 MAS1_AGRRA 3.77e-04 317_[1(3.71e-07)]_147 PCR_PEA 1.88e-06 162_[1(7.97e-07)]_110_[2(9.20e-07)]_\ 28_[2(1.31e-06)]_31_[2(6.25e-06)]_20 RFBB_NEIGO 3.72e-03 321_[2(2.19e-05)]_13 YURA_MYXXA 6.06e-06 87_[1(1.27e-06)]_67_[2(4.94e-06)]_\ 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (2) found. ******************************************************************************** CPU: Timothys-Mac-Mini.local ********************************************************************************