******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.4.0 (Release date: Tue Mar 9 17:38:20 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= common/adh.s CONTROL SEQUENCES= --none-- ALPHABET= ACDEFGHIKLMNPQRSTVWY Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ 2BHD_STREX 1.0000 255 3BHD_COMTE 1.0000 253 ADH_DROME 1.0000 255 AP27_MOUSE 1.0000 244 BA72_EUBSP 1.0000 249 BDH_HUMAN 1.0000 343 BPHB_PSEPS 1.0000 275 BUDC_KLETE 1.0000 241 DHES_HUMAN 1.0000 327 DHGB_BACME 1.0000 262 DHII_HUMAN 1.0000 292 DHMA_FLAS1 1.0000 270 ENTA_ECOLI 1.0000 248 FIXR_BRAJA 1.0000 278 GUTD_ECOLI 1.0000 259 HDE_CANTR 1.0000 906 HDHA_ECOLI 1.0000 255 LIGD_PSEPA 1.0000 305 NODG_RHIME 1.0000 245 RIDH_KLEAE 1.0000 249 YINL_LISMO 1.0000 248 YRTP_BACSU 1.0000 238 CSGA_MYXXA 1.0000 166 DHB2_HUMAN 1.0000 387 DHB3_HUMAN 1.0000 310 DHCA_HUMAN 1.0000 276 FABI_ECOLI 1.0000 262 FVT1_HUMAN 1.0000 332 HMTR_LEIMA 1.0000 287 MAS1_AGRRA 1.0000 476 PCR_PEA 1.0000 399 RFBB_NEIGO 1.0000 346 YURA_MYXXA 1.0000 258 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -nsites 27 common/adh.s -oc results/meme5 -mod zoops -protein -nmotifs 2 -objfun classic -minw 8 -nostatus -mpi model: mod= zoops nmotifs= 2 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values width: minw= 8 maxw= 50 nsites: minsites= 27 maxsites= 27 wnsites= 0.8 theta: spmap= pam spfuzz= 120 em: prior= megap b= 49975 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 9996 N= 33 sample: seed= 0 hsfrac= 0 searchsize= 9996 norand= no csites= 1000 Dirichlet mixture priors file: prior30.plib Letter frequencies in dataset: A 0.111 C 0.0121 D 0.0502 E 0.0553 F 0.0359 G 0.0898 H 0.0182 I 0.0566 K 0.0518 L 0.0919 M 0.0272 N 0.0405 P 0.0405 Q 0.0294 R 0.0494 S 0.0637 T 0.0565 V 0.083 W 0.0095 Y 0.027 Background letter frequencies (from file dataset with add-one prior applied): A 0.111 C 0.0122 D 0.0502 E 0.0553 F 0.0359 G 0.0898 H 0.0183 I 0.0566 K 0.0518 L 0.0919 M 0.0273 N 0.0405 P 0.0405 Q 0.0295 R 0.0494 S 0.0637 T 0.0565 V 0.083 W 0.00959 Y 0.0271 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF KVALVTGASSGIGKAIAKALA MEME-1 width = 21 sites = 27 llr = 811 E-value = 1.1e-117 ******************************************************************************** -------------------------------------------------------------------------------- Motif KVALVTGASSGIGKAIAKALA MEME-1 Description -------------------------------------------------------------------------------- Simplified A :14::::53:::::617:2:3 pos.-specific C :::::::1::::::::::::: probability D ::::::::1:::::::::1:: matrix E ::::::::::::::2::11:: F :::::::::::::1:::::3: G ::::::a4219:a:::::::: H :::::::::::::1::::1:1 I ::124::::::6:::3:1::1 K 61:::::::2:::3:::3::: L :::5:::::::2:2:1:1161 M :::::::::::::::1::::: N :1::::::1:::::::::::: P 1:::::::::::::::::::: Q 1:::::::::::::::::::: R :::::::::2:::2:::21:: S :::::::133::::1:::::: T :1:::a:::::::::3::1:: V :4415::::::1:::12:1:1 W ::::::::::::::::::::: Y ::::::::::::::::::::: bits 6.7 6.0 5.4 4.7 Relative 4.0 * Entropy 3.4 ** * (43.4 bits) 2.7 *** *** 2.0 * ****** *** * * * 1.3 ****************** ** 0.7 ********************* 0.0 --------------------- Multilevel KVALVTGAASGIGKAIAKXLA consensus VII GS L R TV F sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KVALVTGASSGIGKAIAKALA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- --------------------- YINL_LISMO 6 9.09e-18 MTIKN KVIIITGASSGIGKATALLLA EKGAKLVLAA BUDC_KLETE 3 9.09e-18 MQ KVALVTGAGQGIGKAIALRLV KDGFAVAIAD YRTP_BACSU 7 5.84e-17 MQSLQH KTALITGGGRGIGRATALALA KEGVNIGLIG DHII_HUMAN 35 5.84e-17 EEFRPEMLQG KKVIVTGASKGIGREMAYHLA KMGAHVVVTA DHCA_HUMAN 5 5.63e-16 SSGI HVALVTGGNKGIGLAIVRDLC RLFSGDVVLT ENTA_ECOLI 6 5.63e-16 MDFSG KNVWVTGAGKGIGYATALAFV EAGAKVTGFD BDH_HUMAN 56 1.01e-15 YASAAEPVGS KAVLVTGCDSGFGFSLAKHLH SKGFLVFAGC FIXR_BRAJA 37 1.97e-15 VNARVDRGEP KVMLLTGASRGIGHATAKLFS EAGWRIISCA HDHA_ECOLI 12 3.05e-15 FNSDNLRLDG KCAIITGAGAGIGKEIAITFA TAGASVVVSD RIDH_KLEAE 15 6.37e-15 VSSMNTSLSG KVAAITGAASGIGLECARTLL GAGAKVVLID DHES_HUMAN 3 8.67e-15 AR TVVLITGCSSGIGLHLAVRLA SDPSQSFKVY PCR_PEA 87 2.12e-14 SSEGKKTLRK GNVVITGASSGLGLATAKALA ESGKWHVIMA BA72_EUBSP 7 2.12e-14 MNLVQD KVTIITGGTRGIGFAAAKIFI DNGAKVSIFG DHGB_BACME 8 3.43e-14 MYKDLEG KVVVITGSSTGLGKSMAIRFA TEKAKVVVNY DHMA_FLAS1 15 4.14e-14 VSRRPGRLAG KAAIVTGAAGGIGRATVEAYL REGASVVAMD 3BHD_COMTE 7 4.14e-14 TNRLQG KVALVTGGASGVGLEVVKLLL GEGAKVAFSD DHB2_HUMAN 83 4.55e-14 SGQELLPVDQ KAVLVTGGDCGLGHALCKYLD ELGFTVFAGV AP27_MOUSE 8 4.55e-14 MKLNFSG LRALVTGAGKGIGRDTVKALH ASGAKVVAVT FVT1_HUMAN 33 6.59e-14 ISPKPLALPG AHVVVTGGSSGIGKCIAIECY KQGAFITLVA BPHB_PSEPS 6 2.10e-13 MKLKG EAVLITGGASGLGRALVDRFV AEAKVAVLDK DHB3_HUMAN 49 2.72e-13 LPKSFLRSMG QWAVITGAGDGIGKAYSFELA KRGLNVVLIS HMTR_LEIMA 7 3.83e-13 MTAPTV PVALVTGAAKRLGRSIAEGLH AEGYAVCLHY MAS1_AGRRA 246 5.82e-13 SHWTVEIHQS PVILVSGSNRGVGKAIAEDLI AHGYRLSLGA NODG_RHIME 7 6.32e-13 MFELTG RKALVTGASGAIGGAIARVLH AQGAIVGLHG RFBB_NEIGO 7 2.11e-12 MQTEGK KNILVTGGAGFIGSAVVRHII QNTRDSVVNL 2BHD_STREX 7 7.65e-12 MNDLSG KTVIITGGARGLGAEAARQAV AAGARVVLAD LIGD_PSEPA 7 2.26e-11 MKDFQD QVAFITGGASGAGFGQAKVFG QAGAKIVVAD -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KVALVTGASSGIGKAIAKALA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- YINL_LISMO 9.1e-18 5_[1]_222 BUDC_KLETE 9.1e-18 2_[1]_218 YRTP_BACSU 5.8e-17 6_[1]_211 DHII_HUMAN 5.8e-17 34_[1]_237 DHCA_HUMAN 5.6e-16 4_[1]_251 ENTA_ECOLI 5.6e-16 5_[1]_222 BDH_HUMAN 1e-15 55_[1]_267 FIXR_BRAJA 2e-15 36_[1]_221 HDHA_ECOLI 3e-15 11_[1]_223 RIDH_KLEAE 6.4e-15 14_[1]_214 DHES_HUMAN 8.7e-15 2_[1]_304 PCR_PEA 2.1e-14 86_[1]_292 BA72_EUBSP 2.1e-14 6_[1]_222 DHGB_BACME 3.4e-14 7_[1]_234 DHMA_FLAS1 4.1e-14 14_[1]_235 3BHD_COMTE 4.1e-14 6_[1]_226 DHB2_HUMAN 4.5e-14 82_[1]_284 AP27_MOUSE 4.5e-14 7_[1]_216 FVT1_HUMAN 6.6e-14 32_[1]_279 BPHB_PSEPS 2.1e-13 5_[1]_249 DHB3_HUMAN 2.7e-13 48_[1]_241 HMTR_LEIMA 3.8e-13 6_[1]_260 MAS1_AGRRA 5.8e-13 245_[1]_210 NODG_RHIME 6.3e-13 6_[1]_218 RFBB_NEIGO 2.1e-12 6_[1]_319 2BHD_STREX 7.7e-12 6_[1]_228 LIGD_PSEPA 2.3e-11 6_[1]_278 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KVALVTGASSGIGKAIAKALA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF KVALVTGASSGIGKAIAKALA width=21 seqs=27 YINL_LISMO ( 6) KVIIITGASSGIGKATALLLA 1 BUDC_KLETE ( 3) KVALVTGAGQGIGKAIALRLV 1 YRTP_BACSU ( 7) KTALITGGGRGIGRATALALA 1 DHII_HUMAN ( 35) KKVIVTGASKGIGREMAYHLA 1 DHCA_HUMAN ( 5) HVALVTGGNKGIGLAIVRDLC 1 ENTA_ECOLI ( 6) KNVWVTGAGKGIGYATALAFV 1 BDH_HUMAN ( 56) KAVLVTGCDSGFGFSLAKHLH 1 FIXR_BRAJA ( 37) KVMLLTGASRGIGHATAKLFS 1 HDHA_ECOLI ( 12) KCAIITGAGAGIGKEIAITFA 1 RIDH_KLEAE ( 15) KVAAITGAASGIGLECARTLL 1 DHES_HUMAN ( 3) TVVLITGCSSGIGLHLAVRLA 1 PCR_PEA ( 87) GNVVITGASSGLGLATAKALA 1 BA72_EUBSP ( 7) KVTIITGGTRGIGFAAAKIFI 1 DHGB_BACME ( 8) KVVVITGSSTGLGKSMAIRFA 1 DHMA_FLAS1 ( 15) KAAIVTGAAGGIGRATVEAYL 1 3BHD_COMTE ( 7) KVALVTGGASGVGLEVVKLLL 1 DHB2_HUMAN ( 83) KAVLVTGGDCGLGHALCKYLD 1 AP27_MOUSE ( 8) LRALVTGAGKGIGRDTVKALH 1 FVT1_HUMAN ( 33) AHVVVTGGSSGIGKCIAIECY 1 BPHB_PSEPS ( 6) EAVLITGGASGLGRALVDRFV 1 DHB3_HUMAN ( 49) QWAVITGAGDGIGKAYSFELA 1 HMTR_LEIMA ( 7) PVALVTGAAKRLGRSIAEGLH 1 MAS1_AGRRA ( 246) PVILVSGSNRGVGKAIAEDLI 1 NODG_RHIME ( 7) RKALVTGASGAIGGAIARVLH 1 RFBB_NEIGO ( 7) KNILVTGGAGFIGSAVVRHII 1 2BHD_STREX ( 7) KTVIITGGARGLGAEAARQAV 1 LIGD_PSEPA ( 7) QVAFITGGASGAGFGQAKVFG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KVALVTGASSGIGKAIAKALA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 20 w= 21 n= 9335 bayes= 8.42937 E= 1.1e-117 -123 -304 -197 -9 -345 -129 97 -347 324 -128 -267 -158 63 134 -11 -174 -39 -340 -317 -266 22 132 -263 -193 -271 -379 85 -183 47 -250 -206 118 -315 -139 -34 -216 30 226 160 -260 189 -293 -643 -584 -374 -622 -506 112 -561 -300 45 -542 -567 -510 -571 -487 -58 213 -467 -440 -156 -255 -555 -475 6 -537 -365 181 -445 249 -149 -445 -456 -362 -431 -394 -319 73 170 -315 -517 -345 -738 -704 -447 -767 -730 294 -698 -107 -356 -670 -682 -680 -749 -657 -447 261 -649 -579 -369 -263 -460 -490 -463 -501 -394 -384 -411 -493 -356 -292 -450 -350 -422 -24 398 -379 -434 -481 -543 -516 -527 -593 -662 345 -530 -712 -574 -725 -665 -492 -593 -574 -569 -510 -610 -699 -553 -615 209 257 -632 -627 -593 199 -552 -610 -644 -622 -547 -506 -467 -507 -590 33 -350 -484 -569 -614 133 -389 67 -325 -569 123 -272 -639 -357 -630 -588 104 -446 -313 -437 215 -54 -594 -555 -461 -120 131 -25 -120 -339 7 -131 -343 171 -329 -263 -151 -278 66 169 212 -37 -335 -313 -261 -190 -323 -303 -365 -98 329 -328 -492 -347 -536 -438 -259 -413 -362 -122 -282 -399 -478 -364 -417 -233 -271 -436 -426 -80 -525 -397 352 -384 59 -119 -382 -455 -365 -425 -372 -299 49 -338 -309 -543 -516 -527 -593 -662 345 -530 -712 -574 -725 -665 -492 -593 -574 -569 -510 -610 -699 -553 -615 -124 -291 -215 -143 135 -129 183 -314 215 77 -256 -173 -296 -89 196 -45 -205 -318 -313 31 249 109 -102 89 -331 -140 24 -319 -301 -332 -270 -272 -410 -268 -326 45 -234 -214 -319 -352 -54 150 -471 -393 -204 -436 -277 207 -360 69 139 -349 -382 23 -355 -289 200 9 -245 41 266 134 -462 -421 -396 -304 -395 -381 -423 -399 -337 -403 -445 -376 -421 -44 -277 101 -383 -432 -259 -253 -34 94 -8 -358 -156 78 229 50 -222 -182 -298 -103 169 -190 -198 -98 -292 32 55 -290 49 56 -327 -127 234 -72 -100 6 -252 -150 -275 66 140 -165 36 -33 -306 29 -171 129 -563 -481 251 -564 -368 -34 -454 272 -134 -464 -459 -359 -431 -422 -350 -254 -305 22 124 149 -62 -380 -206 -136 277 101 -349 35 -147 -342 -380 -287 -349 -69 -222 84 -246 40 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KVALVTGASSGIGKAIAKALA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 20 w= 21 nsites= 27 E= 1.1e-117 0.037037 0.000000 0.000000 0.037037 0.000000 0.037037 0.037037 0.000000 0.592593 0.037037 0.000000 0.000000 0.074074 0.074074 0.037037 0.000000 0.037037 0.000000 0.000000 0.000000 0.148148 0.037037 0.000000 0.000000 0.000000 0.000000 0.037037 0.000000 0.074074 0.000000 0.000000 0.111111 0.000000 0.000000 0.037037 0.000000 0.074074 0.444444 0.037037 0.000000 0.444444 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.111111 0.000000 0.000000 0.037037 0.000000 0.000000 0.000000 0.000000 0.000000 0.037037 0.370370 0.000000 0.000000 0.037037 0.000000 0.000000 0.000000 0.037037 0.000000 0.000000 0.222222 0.000000 0.518519 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.148148 0.037037 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.444444 0.000000 0.037037 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.518519 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.037037 0.962963 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.481481 0.074074 0.000000 0.000000 0.000000 0.370370 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.074074 0.000000 0.000000 0.000000 0.000000 0.296296 0.000000 0.074074 0.000000 0.000000 0.222222 0.000000 0.000000 0.000000 0.000000 0.000000 0.074074 0.000000 0.000000 0.000000 0.296296 0.037037 0.000000 0.000000 0.000000 0.037037 0.037037 0.037037 0.000000 0.000000 0.111111 0.000000 0.000000 0.185185 0.000000 0.000000 0.000000 0.000000 0.037037 0.185185 0.333333 0.037037 0.000000 0.000000 0.000000 0.037037 0.000000 0.000000 0.000000 0.037037 0.888889 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.037037 0.000000 0.000000 0.000000 0.000000 0.000000 0.037037 0.000000 0.000000 0.000000 0.037037 0.000000 0.000000 0.629630 0.000000 0.222222 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.074074 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.037037 0.000000 0.000000 0.000000 0.111111 0.037037 0.074074 0.000000 0.259259 0.185185 0.000000 0.000000 0.000000 0.000000 0.222222 0.037037 0.000000 0.000000 0.000000 0.037037 0.555556 0.037037 0.037037 0.185185 0.000000 0.037037 0.037037 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.111111 0.000000 0.000000 0.000000 0.000000 0.074074 0.037037 0.000000 0.000000 0.000000 0.000000 0.000000 0.259259 0.000000 0.148148 0.074074 0.000000 0.000000 0.037037 0.000000 0.000000 0.259259 0.074074 0.000000 0.037037 0.703704 0.037037 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.037037 0.000000 0.222222 0.000000 0.000000 0.000000 0.000000 0.037037 0.111111 0.037037 0.000000 0.000000 0.111111 0.296296 0.148148 0.000000 0.000000 0.000000 0.000000 0.185185 0.000000 0.000000 0.037037 0.000000 0.037037 0.185185 0.000000 0.074074 0.074074 0.000000 0.037037 0.111111 0.037037 0.000000 0.111111 0.000000 0.000000 0.000000 0.037037 0.148148 0.000000 0.074074 0.074074 0.000000 0.037037 0.037037 0.037037 0.000000 0.000000 0.259259 0.000000 0.000000 0.037037 0.000000 0.592593 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.037037 0.296296 0.037037 0.037037 0.000000 0.000000 0.037037 0.148148 0.111111 0.000000 0.111111 0.000000 0.000000 0.000000 0.000000 0.000000 0.037037 0.000000 0.148148 0.000000 0.037037 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KVALVTGASSGIGKAIAKALA MEME-1 regular expression -------------------------------------------------------------------------------- KV[AV][LI][VI]TG[AG][ASG]SG[IL]G[KR]A[IT][AV]KX[LF]A -------------------------------------------------------------------------------- Time 0.55 secs. ******************************************************************************** ******************************************************************************** MOTIF YSASKAAVRGLTRSLALELAP MEME-2 width = 21 sites = 27 llr = 800 E-value = 6.0e-115 ******************************************************************************** -------------------------------------------------------------------------------- Motif YSASKAAVRGLTRSLALELAP MEME-2 Description -------------------------------------------------------------------------------- Simplified A :171:46111:1:215:::4: pos.-specific C :1::::::::::::::::::: probability D ::::::::1::::::::3::: matrix E ::::::::1:::21:::6::1 F :::::31:::3:::::1:::: G :1:::13::4:::::1:::11 H :::::::::1::1:::::::: I :::::::11:::::::::1:: K ::::a:::1:::2::::::11 L :::::::31:7:::5:2:5:: M ::1::::1:1:1::2:1:::: N ::::::::::::::::::::: P ::::::::::::::::::::4 Q ::::::::::::1::11:::1 R ::::::::1:::3::21::21 S :427::::11:213:::::1: T :1:1::::1::4:1::::::1 V :::::::41::2:1::1:1:: W :::::1::::::::::::::: Y a:::::::::::::::::2:: bits 6.7 6.0 5.4 * 4.7 * Relative 4.0 * * Entropy 3.4 * * (42.8 bits) 2.7 * ** * * 2.0 * ***** *** ** ** 1.3 ******** ************ 0.7 ********************* 0.0 --------------------- Multilevel YSASKAAVXGLTRSLALELAP consensus FGL FSEAMR D sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YSASKAAVRGLTRSLALELAP MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- --------------------- BUDC_KLETE 152 5.56e-18 GHVGNPELAV YSSSKFAVRGLTQTAARDLAP LGITVNGFCP YRTP_BACSU 155 3.00e-17 GQRGAAVTSA YSASKFAVLGLTESLMQEVRK HNIRVSALTP FVT1_HUMAN 186 1.89e-16 GQLGLFGFTA YSASKFAIRGLAEALQMEVKP YNVYITVAYP NODG_RHIME 152 1.89e-16 GAIGNPGQTN YCASKAGMIGFSKSLAQEIAT RNITVNCVAP AP27_MOUSE 149 4.45e-16 AHVTFPNLIT YSSTKGAMTMLTKAMAMELGP HKIRVNSVNP DHES_HUMAN 155 1.01e-15 GLMGLPFNDV YCASKFALEGLCESLAVLLLP FGVHLSLIEC HMTR_LEIMA 193 4.21e-15 TNQPLLGYTI YTMAKGALEGLTRSAALELAP LQIRVNGVGP GUTD_ECOLI 154 1.42e-14 GKVGSKHNSG YSAAKFGGVGLTQSLALDLAE YGITVHSLML DHGB_BACME 160 1.79e-14 WKIPWPLFVH YAASKGGMKLMTETLALEYAP KGIRVNNIGP 3BHD_COMTE 151 1.79e-14 SWLPIEQYAG YSASKAAVSALTRAAALSCRK QGYAIRVNSI YURA_MYXXA 160 2.01e-14 AGFRGLPATR YSASKAFLSTFMESLRVDLRG TGVRVTCIYP BPHB_PSEPS 153 2.26e-14 GFYPNGGGPL YTAAKQAIVGLVRELAFELAP YVRVNGVGPG DHB2_HUMAN 232 3.18e-14 GGAPMERLAS YGSSKAAVTMFSSVMRLELSK WGIKVASIQP FIXR_BRAJA 189 4.46e-14 SRVHPFAGSA YATSKAALASLTRELAHDYAP HGIRVNAIAP DHB3_HUMAN 198 4.98e-14 ALFPWPLYSM YSASKAFVCAFSKALQEEYKA KEVIIQVLTP HDE_CANTR 467 4.98e-14 GIYGNFGQAN YSSSKAGILGLSKTMAIEGAK NNIKVNIVAP 2BHD_STREX 152 5.56e-14 GLMGLALTSS YGASKWGVRGLSKLAAVELGT DRIRVNSVHP YINL_LISMO 154 6.93e-14 GLKAYPGGAV YGATKWAVRDLMEVLRMESAQ EGTNIRTATI DHII_HUMAN 183 1.19e-13 GKVAYPMVAA YSASKFALDGFFSSIRKEYSV SRVNVSITLC RIDH_KLEAE 160 1.63e-13 GVVPVIWEPV YTASKFAVQAFVHTTRRQVAQ YGVRVGAVLP DHMA_FLAS1 165 2.01e-13 SFMAEPEAAA YVAAKGGVAMLTRAMAVDLAR HGILVNMIAP RFBB_NEIGO 165 2.74e-13 ETTPYAPSSP YSASKAAADHLVRAWQRTYRL PSIVSNCSNN HDHA_ECOLI 159 5.54e-13 AENKNINMTS YASSKAAASHLVRNMAFDLGE KNIRVNGIAP BDH_HUMAN 208 6.12e-13 GRMANPARSP YCITKFGVEAFSDCLRYEMYP LGVKVSVVEP CSGA_MYXXA 88 1.46e-12 AANTDGGAYA YRMSKAALNMAVRSMSTDLRP EGFVTVLLHP BA72_EUBSP 157 4.42e-12 GIFGSLSGVG YPASKASVIGLTHGLGREIIR KNIRVVGVAP ENTA_ECOLI 144 8.98e-12 AHTPRIGMSA YGASKAALKSLALSVGLELAG SGVRCNVVSP -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YSASKAAVRGLTRSLALELAP MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- BUDC_KLETE 5.6e-18 151_[2]_69 YRTP_BACSU 3e-17 154_[2]_63 FVT1_HUMAN 1.9e-16 185_[2]_126 NODG_RHIME 1.9e-16 151_[2]_73 AP27_MOUSE 4.5e-16 148_[2]_75 DHES_HUMAN 1e-15 154_[2]_152 HMTR_LEIMA 4.2e-15 192_[2]_74 GUTD_ECOLI 1.4e-14 153_[2]_85 DHGB_BACME 1.8e-14 159_[2]_82 3BHD_COMTE 1.8e-14 150_[2]_82 YURA_MYXXA 2e-14 159_[2]_78 BPHB_PSEPS 2.3e-14 152_[2]_102 DHB2_HUMAN 3.2e-14 231_[2]_135 FIXR_BRAJA 4.5e-14 188_[2]_69 DHB3_HUMAN 5e-14 197_[2]_92 HDE_CANTR 5e-14 466_[2]_419 2BHD_STREX 5.6e-14 151_[2]_83 YINL_LISMO 6.9e-14 153_[2]_74 DHII_HUMAN 1.2e-13 182_[2]_89 RIDH_KLEAE 1.6e-13 159_[2]_69 DHMA_FLAS1 2e-13 164_[2]_85 RFBB_NEIGO 2.7e-13 164_[2]_161 HDHA_ECOLI 5.5e-13 158_[2]_76 BDH_HUMAN 6.1e-13 207_[2]_115 CSGA_MYXXA 1.5e-12 87_[2]_58 BA72_EUBSP 4.4e-12 156_[2]_72 ENTA_ECOLI 9e-12 143_[2]_84 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YSASKAAVRGLTRSLALELAP MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF YSASKAAVRGLTRSLALELAP width=21 seqs=27 BUDC_KLETE ( 152) YSSSKFAVRGLTQTAARDLAP 1 YRTP_BACSU ( 155) YSASKFAVLGLTESLMQEVRK 1 FVT1_HUMAN ( 186) YSASKFAIRGLAEALQMEVKP 1 NODG_RHIME ( 152) YCASKAGMIGFSKSLAQEIAT 1 AP27_MOUSE ( 149) YSSTKGAMTMLTKAMAMELGP 1 DHES_HUMAN ( 155) YCASKFALEGLCESLAVLLLP 1 HMTR_LEIMA ( 193) YTMAKGALEGLTRSAALELAP 1 GUTD_ECOLI ( 154) YSAAKFGGVGLTQSLALDLAE 1 DHGB_BACME ( 160) YAASKGGMKLMTETLALEYAP 1 3BHD_COMTE ( 151) YSASKAAVSALTRAAALSCRK 1 YURA_MYXXA ( 160) YSASKAFLSTFMESLRVDLRG 1 BPHB_PSEPS ( 153) YTAAKQAIVGLVRELAFELAP 1 DHB2_HUMAN ( 232) YGSSKAAVTMFSSVMRLELSK 1 FIXR_BRAJA ( 189) YATSKAALASLTRELAHDYAP 1 DHB3_HUMAN ( 198) YSASKAFVCAFSKALQEEYKA 1 HDE_CANTR ( 467) YSSSKAGILGLSKTMAIEGAK 1 2BHD_STREX ( 152) YGASKWGVRGLSKLAAVELGT 1 YINL_LISMO ( 154) YGATKWAVRDLMEVLRMESAQ 1 DHII_HUMAN ( 183) YSASKFALDGFFSSIRKEYSV 1 RIDH_KLEAE ( 160) YTASKFAVQAFVHTTRRQVAQ 1 DHMA_FLAS1 ( 165) YVAAKGGVAMLTRAMAVDLAR 1 RFBB_NEIGO ( 165) YSASKAAADHLVRAWQRTYRL 1 HDHA_ECOLI ( 159) YASSKAAASHLVRNMAFDLGE 1 BDH_HUMAN ( 208) YCITKFGVEAFSDCLRYEMYP 1 CSGA_MYXXA ( 88) YRMSKAALNMAVRSMSTDLRP 1 BA72_EUBSP ( 157) YPASKASVIGLTHGLGREIIR 1 ENTA_ECOLI ( 144) YGASKAALKSLALSVGLELAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YSASKAAVRGLTRSLALELAP MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 20 w= 21 n= 9335 bayes= 8.42937 E= 6.0e-115 -846 -613 -749 -817 -400 -738 -504 -769 -777 -706 -736 -708 -695 -681 -724 -747 -760 -803 -430 520 -3 295 -464 -454 -463 51 -400 -465 -415 -487 -419 -334 -30 -371 -58 276 101 -126 -451 -452 265 -69 -396 -350 -325 -255 -331 -119 -350 -325 58 -351 -428 -317 -355 93 -95 -202 -315 -363 18 -207 -452 -488 -451 -395 -399 -481 -419 -498 -419 -291 -392 -388 -412 349 105 -463 -432 -435 -533 -410 -566 -527 -610 -595 -434 -517 421 -585 -521 -447 -518 -440 -162 -528 -491 -610 -463 -541 196 -290 -583 -579 298 67 -385 -490 -556 -499 -464 -470 -490 29 -537 -311 -376 -458 288 -210 248 -236 -590 -578 93 144 -518 -556 -589 -569 -498 -483 -464 -482 -555 -50 -339 -436 -528 -568 -57 -201 -512 -436 -238 -136 -323 105 -404 141 192 -392 -423 -339 -400 -334 -260 218 -287 -277 -53 130 50 100 -332 -335 -127 14 68 -46 -256 8 -273 67 140 73 36 -35 -308 -256 26 -261 -38 -189 -319 213 179 -282 -173 -120 215 -196 -323 -142 -228 20 -47 -294 -317 -284 -168 -409 -739 -654 271 -744 -528 -224 -631 284 59 -652 -597 -486 -587 -628 -507 -349 -388 -425 -69 136 -447 -420 -10 -462 -313 -202 -366 -264 121 -294 -401 -303 -370 158 279 94 -304 -306 -271 -319 -28 185 -361 -359 184 -361 175 -128 -280 -172 -298 135 235 25 -212 -354 -330 -281 79 130 -256 32 -298 -138 -188 -263 -171 -121 -235 -11 -313 -141 -223 232 124 -31 -302 -271 22 -199 -498 -419 -209 -471 -307 -17 -387 234 278 -382 -404 -314 -378 -326 -54 -67 169 -263 217 -232 -375 -308 -445 -38 -291 -431 -215 -432 28 -313 -407 175 198 -52 -291 -368 -414 -408 -282 -184 -361 -55 92 -411 89 -18 -43 116 187 -285 -355 118 137 -256 -40 80 -254 39 -399 -665 228 338 -665 -511 -366 -554 -284 -141 -487 -353 -416 50 -421 -79 -66 -513 -628 -550 -299 144 -474 -395 -203 -142 -282 53 -363 227 55 -355 -383 -295 -356 -76 -230 47 -248 250 198 -172 -258 -188 -313 -6 -187 -77 42 -132 -244 -214 -329 -135 150 18 -212 -254 -304 11 -121 -298 -192 54 -338 -47 -134 -341 142 -129 -263 -156 290 133 55 -169 34 -119 -315 -264 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YSASKAAVRGLTRSLALELAP MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 20 w= 21 nsites= 27 E= 6.0e-115 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.111111 0.111111 0.000000 0.000000 0.000000 0.148148 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.037037 0.000000 0.037037 0.407407 0.111111 0.037037 0.000000 0.000000 0.666667 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.037037 0.000000 0.000000 0.074074 0.000000 0.000000 0.000000 0.000000 0.185185 0.037037 0.000000 0.000000 0.000000 0.148148 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.740741 0.111111 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.444444 0.000000 0.000000 0.000000 0.296296 0.148148 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.037037 0.000000 0.000000 0.000000 0.000000 0.074074 0.000000 0.629630 0.000000 0.000000 0.000000 0.074074 0.259259 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.037037 0.000000 0.000000 0.000000 0.000000 0.074074 0.000000 0.000000 0.000000 0.000000 0.037037 0.000000 0.111111 0.000000 0.259259 0.111111 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.407407 0.000000 0.000000 0.074074 0.037037 0.074074 0.111111 0.000000 0.000000 0.000000 0.074074 0.074074 0.074074 0.000000 0.037037 0.000000 0.037037 0.148148 0.111111 0.074074 0.074074 0.000000 0.000000 0.148148 0.000000 0.037037 0.000000 0.000000 0.444444 0.074074 0.000000 0.000000 0.037037 0.148148 0.000000 0.000000 0.000000 0.000000 0.074074 0.037037 0.000000 0.000000 0.000000 0.037037 0.000000 0.000000 0.000000 0.259259 0.000000 0.000000 0.000000 0.000000 0.666667 0.037037 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.074074 0.037037 0.000000 0.000000 0.037037 0.000000 0.000000 0.000000 0.000000 0.000000 0.074074 0.000000 0.000000 0.000000 0.000000 0.222222 0.370370 0.185185 0.000000 0.000000 0.000000 0.000000 0.037037 0.222222 0.000000 0.000000 0.074074 0.000000 0.185185 0.037037 0.000000 0.000000 0.000000 0.074074 0.296296 0.074074 0.000000 0.000000 0.000000 0.000000 0.222222 0.037037 0.000000 0.074074 0.000000 0.037037 0.000000 0.000000 0.000000 0.037037 0.000000 0.037037 0.000000 0.000000 0.000000 0.333333 0.148148 0.074074 0.000000 0.000000 0.148148 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.037037 0.000000 0.481481 0.222222 0.000000 0.000000 0.000000 0.000000 0.000000 0.037037 0.037037 0.037037 0.000000 0.518519 0.000000 0.000000 0.000000 0.000000 0.074074 0.000000 0.000000 0.000000 0.000000 0.037037 0.000000 0.000000 0.111111 0.222222 0.037037 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.037037 0.074074 0.000000 0.037037 0.037037 0.037037 0.222222 0.111111 0.000000 0.000000 0.074074 0.148148 0.000000 0.037037 0.148148 0.000000 0.037037 0.000000 0.000000 0.259259 0.592593 0.000000 0.000000 0.000000 0.000000 0.000000 0.037037 0.000000 0.000000 0.000000 0.037037 0.000000 0.037037 0.037037 0.000000 0.000000 0.000000 0.000000 0.037037 0.000000 0.000000 0.000000 0.037037 0.000000 0.074074 0.000000 0.481481 0.037037 0.000000 0.000000 0.000000 0.000000 0.037037 0.000000 0.111111 0.000000 0.185185 0.444444 0.000000 0.000000 0.000000 0.000000 0.111111 0.000000 0.037037 0.074074 0.037037 0.000000 0.000000 0.000000 0.000000 0.185185 0.074074 0.000000 0.000000 0.000000 0.037037 0.037037 0.000000 0.000000 0.074074 0.000000 0.074074 0.000000 0.000000 0.148148 0.037037 0.000000 0.000000 0.370370 0.074074 0.074074 0.000000 0.074074 0.037037 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YSASKAAVRGLTRSLALELAP MEME-2 regular expression -------------------------------------------------------------------------------- YSASK[AF][AG][VL]XG[LF][TS][RE][SA][LM][AR]L[ED]LAP -------------------------------------------------------------------------------- Time 1.06 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 2BHD_STREX 1.09e-18 6_[1(7.65e-12)]_124_[2(5.56e-14)]_\ 83 3BHD_COMTE 2.12e-21 6_[1(4.14e-14)]_123_[2(1.79e-14)]_\ 82 ADH_DROME 1.20e-07 6_[1(1.73e-06)]_124_[2(6.29e-08)]_\ 83 AP27_MOUSE 5.71e-23 7_[1(4.55e-14)]_120_[2(4.45e-16)]_\ 75 BA72_EUBSP 2.35e-19 6_[1(2.12e-14)]_129_[2(4.42e-12)]_\ 72 BDH_HUMAN 3.34e-21 55_[1(1.01e-15)]_131_[2(6.12e-13)]_\ 115 BPHB_PSEPS 1.56e-20 5_[1(2.10e-13)]_126_[2(2.26e-14)]_\ 102 BUDC_KLETE 1.71e-28 2_[1(9.09e-18)]_128_[2(5.56e-18)]_\ 69 DHES_HUMAN 4.67e-23 2_[1(8.67e-15)]_131_[2(1.01e-15)]_\ 152 DHGB_BACME 1.89e-21 7_[1(3.43e-14)]_131_[2(1.79e-14)]_\ 82 DHII_HUMAN 2.92e-23 34_[1(5.84e-17)]_127_[2(1.19e-13)]_\ 89 DHMA_FLAS1 2.60e-20 14_[1(4.14e-14)]_129_[2(2.01e-13)]_\ 85 ENTA_ECOLI 1.33e-20 5_[1(5.63e-16)]_117_[2(8.98e-12)]_\ 84 FIXR_BRAJA 3.19e-22 36_[1(1.97e-15)]_131_[2(4.46e-14)]_\ 69 GUTD_ECOLI 1.59e-14 2_[1(5.39e-07)]_130_[2(1.42e-14)]_\ 85 HDE_CANTR 3.01e-19 8_[1(5.69e-12)]_133_[2(2.30e-10)]_\ 139_[1(1.62e-13)]_123_[2(4.98e-14)]_419 HDHA_ECOLI 4.82e-21 11_[1(3.05e-15)]_126_[2(5.54e-13)]_\ 76 LIGD_PSEPA 3.76e-12 6_[1(2.26e-11)]_129_[2(6.67e-08)]_\ 128 NODG_RHIME 3.29e-22 6_[1(6.32e-13)]_124_[2(1.89e-16)]_\ 73 RIDH_KLEAE 2.85e-21 14_[1(6.37e-15)]_124_[2(1.63e-13)]_\ 69 YINL_LISMO 1.95e-24 5_[1(9.09e-18)]_127_[2(6.93e-14)]_\ 74 YRTP_BACSU 5.46e-27 6_[1(5.84e-17)]_127_[2(3.00e-17)]_\ 63 CSGA_MYXXA 3.74e-09 87_[2(1.46e-12)]_58 DHB2_HUMAN 9.93e-21 82_[1(4.55e-14)]_128_[2(3.18e-14)]_\ 135 DHB3_HUMAN 5.62e-20 48_[1(2.72e-13)]_128_[2(4.98e-14)]_\ 92 DHCA_HUMAN 1.20e-15 4_[1(5.63e-16)]_167_[2(8.31e-07)]_\ 63 FABI_ECOLI 1.15e-03 6_[1(9.98e-06)]_235 FVT1_HUMAN 6.79e-23 32_[1(6.59e-14)]_132_[2(1.89e-16)]_\ 126 HMTR_LEIMA 5.92e-21 6_[1(3.83e-13)]_165_[2(4.21e-15)]_\ 74 MAS1_AGRRA 1.37e-11 245_[1(5.82e-13)]_125_[2(3.87e-06)]_\ 64 PCR_PEA 4.32e-11 86_[1(2.12e-14)]_292 RFBB_NEIGO 2.77e-18 6_[1(2.11e-12)]_137_[2(2.74e-13)]_\ 161 YURA_MYXXA 1.06e-10 159_[2(2.01e-14)]_78 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (2) found. ******************************************************************************** CPU: Timothys-Mac-Mini.local ********************************************************************************