******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.4.0 (Release date: Tue Mar 9 17:38:20 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= common/adh.s CONTROL SEQUENCES= --none-- ALPHABET= ACDEFGHIKLMNPQRSTVWY Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ 2BHD_STREX 1.0000 255 3BHD_COMTE 1.0000 253 ADH_DROME 1.0000 255 AP27_MOUSE 1.0000 244 BA72_EUBSP 1.0000 249 BDH_HUMAN 1.0000 343 BPHB_PSEPS 1.0000 275 BUDC_KLETE 1.0000 241 DHES_HUMAN 1.0000 327 DHGB_BACME 1.0000 262 DHII_HUMAN 1.0000 292 DHMA_FLAS1 1.0000 270 ENTA_ECOLI 1.0000 248 FIXR_BRAJA 1.0000 278 GUTD_ECOLI 1.0000 259 HDE_CANTR 1.0000 906 HDHA_ECOLI 1.0000 255 LIGD_PSEPA 1.0000 305 NODG_RHIME 1.0000 245 RIDH_KLEAE 1.0000 249 YINL_LISMO 1.0000 248 YRTP_BACSU 1.0000 238 CSGA_MYXXA 1.0000 166 DHB2_HUMAN 1.0000 387 DHB3_HUMAN 1.0000 310 DHCA_HUMAN 1.0000 276 FABI_ECOLI 1.0000 262 FVT1_HUMAN 1.0000 332 HMTR_LEIMA 1.0000 287 MAS1_AGRRA 1.0000 476 PCR_PEA 1.0000 399 RFBB_NEIGO 1.0000 346 YURA_MYXXA 1.0000 258 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme common/adh.s -oc results/meme4 -mod oops -protein -nmotifs 2 -objfun classic -minw 8 -nostatus -mpi model: mod= oops nmotifs= 2 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values width: minw= 8 maxw= 50 nsites: minsites= 33 maxsites= 33 wnsites= 0.8 theta: spmap= pam spfuzz= 120 em: prior= dmix b= 0 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 9996 N= 33 sample: seed= 0 hsfrac= 0 searchsize= 9996 norand= no csites= 1000 Dirichlet mixture priors file: prior30.plib Letter frequencies in dataset: A 0.111 C 0.0121 D 0.0502 E 0.0553 F 0.0359 G 0.0898 H 0.0182 I 0.0566 K 0.0518 L 0.0919 M 0.0272 N 0.0405 P 0.0405 Q 0.0294 R 0.0494 S 0.0637 T 0.0565 V 0.083 W 0.0095 Y 0.027 Background letter frequencies (from file dataset with add-one prior applied): A 0.111 C 0.0122 D 0.0502 E 0.0553 F 0.0359 G 0.0898 H 0.0183 I 0.0566 K 0.0518 L 0.0919 M 0.0273 N 0.0405 P 0.0405 Q 0.0295 R 0.0494 S 0.0637 T 0.0565 V 0.083 W 0.00959 Y 0.0271 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GKVALVTGAASGJGKATAKAL MEME-1 width = 21 sites = 33 llr = 886 E-value = 4.0e-129 ******************************************************************************** -------------------------------------------------------------------------------- Motif GKVALVTGAASGJGKATAKAL MEME-1 Description -------------------------------------------------------------------------------- Simplified A ::14:::1531:::1516:2: pos.-specific C ::::::::1::::::::1::: probability D 1::::::::1:::::1::11: matrix E :::::::::::::::2::11: F ::::::::::::::1:::::2 G 4::::::94218:9:::1:1: H ::::::::::::::1::::1: I 1::124::::::5:::2:1:: K 161:::::::2:::2:::3:: L ::::5:::::::3:2:2:115 M ::::::::::::::::1:::: N 1:1::::::1::::::::::: P :1::::::::::::::::::: Q 11::::::::1:::::::::: R ::1:::::::2:::2:::21: S 1:::::::123::1:1:1::: T ::11::9::::1::::2::1: V 1:5425::::::1:::12:1: W ::::::::::::::::::::: Y ::::::::::::::::1:::: bits 6.7 6.0 5.4 4.7 Relative 4.0 Entropy 3.4 ** * (38.7 bits) 2.7 *** * * 2.0 * ***** *** * * 1.3 ******************* * 0.7 ********************* 0.0 --------------------- Multilevel GKVALVTGAASGIGKATAKXL consensus VII GG L I F sequence S L -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GKVALVTGAASGJGKATAKAL MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- --------------------- BUDC_KLETE 2 8.78e-18 M QKVALVTGAGQGIGKAIALRL VKDGFAVAIA YINL_LISMO 5 1.41e-17 MTIK NKVIIITGASSGIGKATALLL AEKGAKLVLA DHII_HUMAN 34 1.42e-16 NEEFRPEMLQ GKKVIVTGASKGIGREMAYHL AKMGAHVVVT HDE_CANTR 322 2.75e-16 ASGAPTVSLK DKVVLITGAGAGLGKEYAKWF AKYGAKVVVN YRTP_BACSU 6 3.55e-16 MQSLQ HKTALITGGGRGIGRATALAL AKEGVNIGLI ENTA_ECOLI 5 3.55e-16 MDFS GKNVWVTGAGKGIGYATALAF VEAGAKVTGF HDHA_ECOLI 11 1.74e-15 MFNSDNLRLD GKCAIITGAGAGIGKEIAITF ATAGASVVVS RIDH_KLEAE 14 3.87e-15 SVSSMNTSLS GKVAAITGAASGIGLECARTL LGAGAKVVLI DHB2_HUMAN 82 4.84e-15 LSGQELLPVD QKAVLVTGGDCGLGHALCKYL DELGFTVFAG FIXR_BRAJA 36 1.04e-14 AVNARVDRGE PKVMLLTGASRGIGHATAKLF SEAGWRIISC PCR_PEA 86 1.58e-14 SSSEGKKTLR KGNVVITGASSGLGLATAKAL AESGKWHVIM DHCA_HUMAN 4 1.76e-14 SSG IHVALVTGGNKGIGLAIVRDL CRLFSGDVVL BDH_HUMAN 55 2.16e-14 TYASAAEPVG SKAVLVTGCDSGFGFSLAKHL HSKGFLVFAG 3BHD_COMTE 6 2.94e-14 TNRLQ GKVALVTGGASGVGLEVVKLL LGEGAKVAFS DHGB_BACME 7 3.25e-14 MYKDLE GKVVVITGSSTGLGKSMAIRF ATEKAKVVVN DHMA_FLAS1 14 3.98e-14 GVSRRPGRLA GKAAIVTGAAGGIGRATVEAY LREGASVVAM FVT1_HUMAN 32 4.39e-14 LISPKPLALP GAHVVVTGGSSGIGKCIAIEC YKQGAFITLV BA72_EUBSP 6 4.39e-14 MNLVQ DKVTIITGGTRGIGFAAAKIF IDNGAKVSIF BPHB_PSEPS 5 4.85e-14 MKLK GEAVLITGGASGLGRALVDRF VAEAKVAVLD DHB3_HUMAN 48 6.52e-14 VLPKSFLRSM GQWAVITGAGDGIGKAYSFEL AKRGLNVVLI DHES_HUMAN 2 1.41e-13 A RTVVLITGCSSGIGLHLAVRL ASDPSQSFKV AP27_MOUSE 7 1.55e-13 MKLNFS GLRALVTGAGKGIGRDTVKAL HASGAKVVAV 2BHD_STREX 6 3.07e-12 MNDLS GKTVIITGGARGLGAEAARQA VAAGARVVLA NODG_RHIME 6 5.43e-12 MFELT GRKALVTGASGAIGGAIARVL HAQGAIVGLH HMTR_LEIMA 6 6.91e-12 MTAPT VPVALVTGAAKRLGRSIAEGL HAEGYAVCLH LIGD_PSEPA 6 8.76e-12 MKDFQ DQVAFITGGASGAGFGQAKVF GQAGAKIVVA MAS1_AGRRA 245 9.48e-12 FSHWTVEIHQ SPVILVSGSNRGVGKAIAEDL IAHGYRLSLG RFBB_NEIGO 6 1.20e-11 MQTEG KKNILVTGGAGFIGSAVVRHI IQNTRDSVVN GUTD_ECOLI 2 1.19e-09 M NQVAVVIGGGQTLGAFLCHGL AAEGYRVAVV ADH_DROME 6 1.54e-09 SFTLT NKNVIFVAGLGGIGLDTSKEL LKRDLKNLVI FABI_ECOLI 6 1.99e-09 MGFLS GKRILVTGVASKLSIAYGIAQ AMHREGAELA CSGA_MYXXA 13 1.42e-06 AFATNVCTGP VDVLINNAGVSGLWCALGDVD YADMARTFTI YURA_MYXXA 116 3.43e-06 KRLPWERVRG IIDTNVTGAAATLSAVLPQMV ERKRGHLVGV -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GKVALVTGAASGJGKATAKAL MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- BUDC_KLETE 8.8e-18 1_[1]_219 YINL_LISMO 1.4e-17 4_[1]_223 DHII_HUMAN 1.4e-16 33_[1]_238 HDE_CANTR 2.7e-16 321_[1]_564 YRTP_BACSU 3.6e-16 5_[1]_212 ENTA_ECOLI 3.6e-16 4_[1]_223 HDHA_ECOLI 1.7e-15 10_[1]_224 RIDH_KLEAE 3.9e-15 13_[1]_215 DHB2_HUMAN 4.8e-15 81_[1]_285 FIXR_BRAJA 1e-14 35_[1]_222 PCR_PEA 1.6e-14 85_[1]_293 DHCA_HUMAN 1.8e-14 3_[1]_252 BDH_HUMAN 2.2e-14 54_[1]_268 3BHD_COMTE 2.9e-14 5_[1]_227 DHGB_BACME 3.3e-14 6_[1]_235 DHMA_FLAS1 4e-14 13_[1]_236 FVT1_HUMAN 4.4e-14 31_[1]_280 BA72_EUBSP 4.4e-14 5_[1]_223 BPHB_PSEPS 4.9e-14 4_[1]_250 DHB3_HUMAN 6.5e-14 47_[1]_242 DHES_HUMAN 1.4e-13 1_[1]_305 AP27_MOUSE 1.5e-13 6_[1]_217 2BHD_STREX 3.1e-12 5_[1]_229 NODG_RHIME 5.4e-12 5_[1]_219 HMTR_LEIMA 6.9e-12 5_[1]_261 LIGD_PSEPA 8.8e-12 5_[1]_279 MAS1_AGRRA 9.5e-12 244_[1]_211 RFBB_NEIGO 1.2e-11 5_[1]_320 GUTD_ECOLI 1.2e-09 1_[1]_237 ADH_DROME 1.5e-09 5_[1]_229 FABI_ECOLI 2e-09 5_[1]_236 CSGA_MYXXA 1.4e-06 12_[1]_133 YURA_MYXXA 3.4e-06 115_[1]_122 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GKVALVTGAASGJGKATAKAL MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GKVALVTGAASGJGKATAKAL width=21 seqs=33 BUDC_KLETE ( 2) QKVALVTGAGQGIGKAIALRL 1 YINL_LISMO ( 5) NKVIIITGASSGIGKATALLL 1 DHII_HUMAN ( 34) GKKVIVTGASKGIGREMAYHL 1 HDE_CANTR ( 322) DKVVLITGAGAGLGKEYAKWF 1 YRTP_BACSU ( 6) HKTALITGGGRGIGRATALAL 1 ENTA_ECOLI ( 5) GKNVWVTGAGKGIGYATALAF 1 HDHA_ECOLI ( 11) GKCAIITGAGAGIGKEIAITF 1 RIDH_KLEAE ( 14) GKVAAITGAASGIGLECARTL 1 DHB2_HUMAN ( 82) QKAVLVTGGDCGLGHALCKYL 1 FIXR_BRAJA ( 36) PKVMLLTGASRGIGHATAKLF 1 PCR_PEA ( 86) KGNVVITGASSGLGLATAKAL 1 DHCA_HUMAN ( 4) IHVALVTGGNKGIGLAIVRDL 1 BDH_HUMAN ( 55) SKAVLVTGCDSGFGFSLAKHL 1 3BHD_COMTE ( 6) GKVALVTGGASGVGLEVVKLL 1 DHGB_BACME ( 7) GKVVVITGSSTGLGKSMAIRF 1 DHMA_FLAS1 ( 14) GKAAIVTGAAGGIGRATVEAY 1 FVT1_HUMAN ( 32) GAHVVVTGGSSGIGKCIAIEC 1 BA72_EUBSP ( 6) DKVTIITGGTRGIGFAAAKIF 1 BPHB_PSEPS ( 5) GEAVLITGGASGLGRALVDRF 1 DHB3_HUMAN ( 48) GQWAVITGAGDGIGKAYSFEL 1 DHES_HUMAN ( 2) RTVVLITGCSSGIGLHLAVRL 1 AP27_MOUSE ( 7) GLRALVTGAGKGIGRDTVKAL 1 2BHD_STREX ( 6) GKTVIITGGARGLGAEAARQA 1 NODG_RHIME ( 6) GRKALVTGASGAIGGAIARVL 1 HMTR_LEIMA ( 6) VPVALVTGAAKRLGRSIAEGL 1 LIGD_PSEPA ( 6) DQVAFITGGASGAGFGQAKVF 1 MAS1_AGRRA ( 245) SPVILVSGSNRGVGKAIAEDL 1 RFBB_NEIGO ( 6) KKNILVTGGAGFIGSAVVRHI 1 GUTD_ECOLI ( 2) NQVAVVIGGGQTLGAFLCHGL 1 ADH_DROME ( 6) NKNVIFVAGLGGIGLDTSKEL 1 FABI_ECOLI ( 6) GKRILVTGVASKLSIAYGIAQ 1 CSGA_MYXXA ( 13) VDVLINNAGVSGLWCALGDVD 1 YURA_MYXXA ( 116) IIDTNVTGAAATLSAVLPQMV 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GKVALVTGAASGJGKATAKAL MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 20 w= 21 n= 9335 bayes= 8.13893 E= 4.0e-129 -269 -319 76 -138 -357 196 75 -9 46 -348 -281 107 -46 112 -37 5 -210 -57 -332 -280 -142 -319 -47 -28 -356 -150 75 -97 322 -150 -280 -171 41 159 -36 -186 -59 -353 -332 -279 2 107 -54 -155 -337 -368 71 -290 39 -323 -265 140 -306 -108 30 -199 10 222 138 -282 172 -284 -615 -547 -343 -592 -448 119 -518 -120 22 -504 -533 -460 -521 -451 9 209 -411 -394 -162 -209 -509 -430 -15 -479 -317 196 -398 232 -163 -54 -417 -328 -390 -333 -266 82 147 -274 -510 -351 -713 -666 -26 -724 -617 277 -648 -129 -343 -50 -649 -606 -671 -597 -441 260 -560 -522 -391 -251 -432 -461 -433 -535 -364 -110 -375 -461 -319 -53 -437 -317 -389 -26 386 -153 -405 -453 -126 -345 -343 -404 -508 334 -366 -528 -387 -569 -474 -298 -445 -398 -390 -310 -422 -508 -402 -454 202 229 -661 -654 -618 209 -578 -634 -670 -647 -571 -534 -494 -533 -616 5 -377 -140 -594 -639 138 -304 28 -258 -431 129 -253 -421 -249 -155 -369 61 -387 -215 -308 182 -72 -139 -420 -377 -30 108 -48 -142 -360 23 -153 -365 148 -351 -284 -173 -300 112 146 217 -60 -357 -335 -283 -204 -337 -316 -378 -112 323 -341 -505 -141 -549 -452 -272 -427 -375 -136 -296 -74 -492 -378 -430 -188 -372 -690 -647 -23 -712 -570 323 -619 179 -254 -609 -627 -548 -629 -582 -453 -16 -467 -471 -327 -339 -321 -383 -490 331 -346 -510 -365 -553 -456 -277 -430 -379 -369 -68 -415 -495 78 -434 -30 117 -296 -225 117 -155 158 -59 204 86 -212 -244 -344 -170 169 -77 -228 -242 -295 12 249 85 -61 75 -97 -160 -14 -308 -319 -322 -261 -331 -425 -289 -335 22 -234 -124 -311 -354 -79 126 -496 -418 -229 -460 -302 183 -384 114 114 -373 -406 -2 -380 -314 194 -15 -269 160 255 180 -429 -384 -362 -88 -365 -348 -385 -363 -301 -381 -102 -349 -388 -6 -263 59 -350 -399 -270 -315 26 76 -39 -360 75 85 236 21 -277 -174 -298 43 146 -188 -211 -138 -330 6 56 -301 25 75 -339 -68 212 -90 -130 -15 8 -180 -302 41 116 -193 13 -2 141 7 -189 94 -116 -421 229 -499 -321 -49 -393 264 -121 -402 -406 -28 -375 -353 -288 -105 -284 -14 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GKVALVTGAASGJGKATAKAL MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 20 w= 21 nsites= 33 E= 4.0e-129 0.000000 0.000000 0.090909 0.000000 0.000000 0.424242 0.030303 0.060606 0.060606 0.000000 0.000000 0.090909 0.030303 0.060606 0.030303 0.060606 0.000000 0.060606 0.000000 0.000000 0.030303 0.000000 0.030303 0.030303 0.000000 0.030303 0.030303 0.030303 0.575758 0.030303 0.000000 0.000000 0.060606 0.090909 0.030303 0.000000 0.030303 0.000000 0.000000 0.000000 0.121212 0.030303 0.030303 0.000000 0.000000 0.000000 0.030303 0.000000 0.060606 0.000000 0.000000 0.121212 0.000000 0.000000 0.060606 0.000000 0.060606 0.454545 0.030303 0.000000 0.393939 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.121212 0.000000 0.030303 0.030303 0.000000 0.000000 0.000000 0.000000 0.000000 0.060606 0.363636 0.000000 0.000000 0.030303 0.000000 0.000000 0.000000 0.030303 0.000000 0.000000 0.242424 0.000000 0.484848 0.000000 0.030303 0.000000 0.000000 0.000000 0.000000 0.000000 0.151515 0.030303 0.000000 0.000000 0.000000 0.000000 0.000000 0.030303 0.000000 0.000000 0.393939 0.000000 0.030303 0.000000 0.030303 0.000000 0.000000 0.000000 0.000000 0.000000 0.515152 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.030303 0.000000 0.000000 0.000000 0.030303 0.000000 0.000000 0.000000 0.030303 0.878788 0.030303 0.000000 0.000000 0.060606 0.000000 0.000000 0.000000 0.000000 0.939394 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.454545 0.060606 0.000000 0.000000 0.000000 0.393939 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.060606 0.000000 0.030303 0.000000 0.000000 0.303030 0.000000 0.060606 0.000000 0.000000 0.242424 0.000000 0.000000 0.000000 0.030303 0.000000 0.060606 0.000000 0.000000 0.000000 0.242424 0.030303 0.030303 0.000000 0.000000 0.090909 0.030303 0.030303 0.000000 0.000000 0.121212 0.000000 0.000000 0.151515 0.000000 0.000000 0.000000 0.000000 0.060606 0.151515 0.333333 0.030303 0.000000 0.000000 0.000000 0.030303 0.000000 0.000000 0.000000 0.030303 0.818182 0.000000 0.000000 0.030303 0.000000 0.000000 0.000000 0.000000 0.000000 0.030303 0.000000 0.060606 0.000000 0.000000 0.000000 0.030303 0.000000 0.000000 0.000000 0.030303 0.000000 0.000000 0.545455 0.000000 0.333333 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.060606 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.909091 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.060606 0.000000 0.000000 0.030303 0.000000 0.090909 0.030303 0.000000 0.000000 0.090909 0.030303 0.060606 0.030303 0.242424 0.181818 0.000000 0.000000 0.000000 0.000000 0.181818 0.030303 0.000000 0.000000 0.000000 0.030303 0.515152 0.030303 0.060606 0.181818 0.030303 0.030303 0.030303 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.090909 0.000000 0.030303 0.000000 0.000000 0.060606 0.030303 0.000000 0.000000 0.000000 0.000000 0.000000 0.212121 0.000000 0.212121 0.060606 0.000000 0.000000 0.030303 0.000000 0.000000 0.242424 0.060606 0.000000 0.090909 0.606061 0.060606 0.000000 0.000000 0.000000 0.060606 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.030303 0.000000 0.000000 0.060606 0.000000 0.181818 0.000000 0.000000 0.000000 0.000000 0.060606 0.090909 0.030303 0.000000 0.030303 0.121212 0.303030 0.121212 0.000000 0.000000 0.000000 0.030303 0.151515 0.000000 0.000000 0.030303 0.000000 0.030303 0.181818 0.000000 0.060606 0.090909 0.000000 0.060606 0.090909 0.030303 0.000000 0.090909 0.030303 0.000000 0.000000 0.030303 0.121212 0.000000 0.060606 0.090909 0.030303 0.030303 0.030303 0.030303 0.030303 0.000000 0.242424 0.000000 0.000000 0.030303 0.000000 0.545455 0.000000 0.000000 0.000000 0.030303 0.000000 0.000000 0.000000 0.030303 0.000000 0.030303 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GKVALVTGAASGJGKATAKAL MEME-1 regular expression -------------------------------------------------------------------------------- GKV[AV][LI][VI]TG[AG][AGS]SG[IL]GKA[TIL]AKX[LF] -------------------------------------------------------------------------------- Time 0.52 secs. ******************************************************************************** ******************************************************************************** MOTIF VGNPGASAYSASKAAVRGLTESLALELAP MEME-2 width = 29 sites = 33 llr = 1019 E-value = 3.1e-130 ******************************************************************************** -------------------------------------------------------------------------------- Motif VGNPGASAYSASKAAVRGLTESLALELAP MEME-2 Description -------------------------------------------------------------------------------- Simplified A :2:11222:162:46111:1:215:::4: pos.-specific C :::::::::1::::::::::::::::::: probability D ::::::::::::::::1:::1::::3::: matrix E :::11:::::::::::1:::21:::5::1 F 1::1:1:::::::31:::2:::::1:1:: G :4:131:1:1:::22::4:::1:1:1111 H :::::::::::::::::1::1:::1:::: I 1:11::::::1::::11:::::::::1:: K :::1::::::::9:::1:::2:::1::12 L 1:2111:1:::::::21:7:::5:215:: M 2::::1::::1::::1:1:1::2:1:::: N 1:2:11:1:::::::::1::::::::::: P :3131:11::::::::::::::::::::3 Q ::::11::::::::::::::1::11:::1 R 1:::::::::::::::2:::2::21::21 S ::1:1:31:426:::111:214:::::1: T 11:::12::1:2::::11:4:21:::::1 V 2::::112:::::::41::2:1::2:1:: W ::1::::::::::1::::::::::::::: Y 1:1::1::9:::::::::::::::::2:: bits 6.7 6.0 5.4 4.7 * Relative 4.0 * * Entropy 3.4 * * (44.5 bits) 2.7 * ** * 2.0 * ***** ** * 1.3 * * * ******** ******* ** * 0.7 ***************************** 0.0 ----------------------------- Multilevel XGXPGXSAYSASKAAVXGLTESLAXELAP consensus P A FGL FSR R D sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VGNPGASAYSASKAAVRGLTESLALELAP MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ----------------------------- BUDC_KLETE 144 2.09e-21 IVNACSQAGH VGNPELAVYSSSKFAVRGLTQTAARDLAP LGITVNGFCP NODG_RHIME 144 7.63e-20 IINVTSVAGA IGNPGQTNYCASKAGMIGFSKSLAQEIAT RNITVNCVAP FVT1_HUMAN 178 6.49e-19 IVFVSSQAGQ LGLFGFTAYSASKFAIRGLAEALQMEVKP YNVYITVAYP DHES_HUMAN 147 1.92e-18 VLVTGSVGGL MGLPFNDVYCASKFALEGLCESLAVLLLP FGVHLSLIEC DHB3_HUMAN 190 5.46e-18 ILNISSGIAL FPWPLYSMYSASKAFVCAFSKALQEEYKA KEVIIQVLTP YRTP_BACSU 147 6.21e-18 IINISSTAGQ RGAAVTSAYSASKFAVLGLTESLMQEVRK HNIRVSALTP HMTR_LEIMA 185 4.52e-17 IINMVDAMTN QPLLGYTIYTMAKGALEGLTRSAALELAP LQIRVNGVGP HDE_CANTR 459 4.52e-17 IINITSTSGI YGNFGQANYSSSKAGILGLSKTMAIEGAK NNIKVNIVAP DHGB_BACME 152 9.21e-17 INMSSVHEWK IPWPLFVHYAASKGGMKLMTETLALEYAP KGIRVNNIGP GUTD_ECOLI 146 1.65e-16 IIQINSKSGK VGSKHNSGYSAAKFGGVGLTQSLALDLAE YGITVHSLML 3BHD_COMTE 143 2.07e-16 IINMASVSSW LPIEQYAGYSASKAAVSALTRAAALSCRK QGYAIRVNSI DHII_HUMAN 175 3.65e-16 IVVVSSLAGK VAYPMVAAYSASKFALDGFFSSIRKEYSV SRVNVSITLC BPHB_PSEPS 145 5.70e-16 VIFTISNAGF YPNGGGPLYTAAKQAIVGLVRELAFELAP YVRVNGVGPG AP27_MOUSE 141 5.70e-16 IVNVSSMVAH VTFPNLITYSSTKGAMTMLTKAMAMELGP HKIRVNSVNP BDH_HUMAN 200 7.93e-16 VVNISSMLGR MANPARSPYCITKFGVEAFSDCLRYEMYP LGVKVSVVEP YINL_LISMO 146 8.85e-16 IIATSSVAGL KAYPGGAVYGATKWAVRDLMEVLRMESAQ EGTNIRTATI FIXR_BRAJA 181 1.10e-15 VNVTSIAGSR VHPFAGSAYATSKAALASLTRELAHDYAP HGIRVNAIAP 2BHD_STREX 144 1.69e-15 IVNISSAAGL MGLALTSSYGASKWGVRGLSKLAAVELGT DRIRVNSVHP RFBB_NEIGO 157 3.54e-15 HGTDDLFTET TPYAPSSPYSASKAAADHLVRAWQRTYRL PSIVSNCSNN YURA_MYXXA 152 4.83e-15 HLVGVSSLAG FRGLPATRYSASKAFLSTFMESLRVDLRG TGVRVTCIYP RIDH_KLEAE 152 7.27e-15 IIFTAVIAGV VPVIWEPVYTASKFAVQAFVHTTRRQVAQ YGVRVGAVLP DHMA_FLAS1 157 9.85e-15 IITIGSVNSF MAEPEAAAYVAAKGGVAMLTRAMAVDLAR HGILVNMIAP DHB2_HUMAN 224 2.41e-14 LVNVSSMGGG APMERLASYGSSKAAVTMFSSVMRLELSK WGIKVASIQP HDHA_ECOLI 151 2.66e-14 ILTITSMAAE NKNINMTSYASSKAAASHLVRNMAFDLGE KNIRVNGIAP ENTA_ECOLI 136 1.22e-13 IVTVASDAAH TPRIGMSAYGASKAALKSLALSVGLELAG SGVRCNVVSP LIGD_PSEPA 149 5.18e-13 IVTVSSLGGF MGSALAGPYSAAKAASINLMEGYRQGLEK YGIGVSVCTP CSGA_MYXXA 80 1.24e-12 VTSRMGSLAA NTDGGAYAYRMSKAALNMAVRSMSTDLRP EGFVTVLLHP BA72_EUBSP 149 1.35e-12 IINTASVTGI FGSLSGVGYPASKASVIGLTHGLGREIIR KNIRVVGVAP ADH_DROME 144 5.59e-12 ICNIGSVTGF NAIYQVPVYSGTKAAVVNFTSSLAKLAPI TGVTAYTVNP MAS1_AGRRA 384 1.44e-10 IVNINSMSGQ RVLNPLVGYNMTKHALGGLTKTTQHVGWD RRCAAIDICL PCR_PEA 18 1.61e-08 MLPASFSIPK EGKIGASLKDSTLFGVSSLSDSLKGDFTS SALRCKELRQ FABI_ECOLI 177 4.26e-08 EANVRYMANA MGPEGVRVNAISAGPIRTLAASGIKDFRK MLAHCEAVTP DHCA_HUMAN 144 1.16e-07 VVNVSSIMSV RALKSCSPELQQKFRSETITEEELVGLMN KFVEDTKKGV -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VGNPGASAYSASKAAVRGLTESLALELAP MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- BUDC_KLETE 2.1e-21 143_[2]_69 NODG_RHIME 7.6e-20 143_[2]_73 FVT1_HUMAN 6.5e-19 177_[2]_126 DHES_HUMAN 1.9e-18 146_[2]_152 DHB3_HUMAN 5.5e-18 189_[2]_92 YRTP_BACSU 6.2e-18 146_[2]_63 HMTR_LEIMA 4.5e-17 184_[2]_74 HDE_CANTR 4.5e-17 458_[2]_419 DHGB_BACME 9.2e-17 151_[2]_82 GUTD_ECOLI 1.6e-16 145_[2]_85 3BHD_COMTE 2.1e-16 142_[2]_82 DHII_HUMAN 3.7e-16 174_[2]_89 BPHB_PSEPS 5.7e-16 144_[2]_102 AP27_MOUSE 5.7e-16 140_[2]_75 BDH_HUMAN 7.9e-16 199_[2]_115 YINL_LISMO 8.8e-16 145_[2]_74 FIXR_BRAJA 1.1e-15 180_[2]_69 2BHD_STREX 1.7e-15 143_[2]_83 RFBB_NEIGO 3.5e-15 156_[2]_161 YURA_MYXXA 4.8e-15 151_[2]_78 RIDH_KLEAE 7.3e-15 151_[2]_69 DHMA_FLAS1 9.9e-15 156_[2]_85 DHB2_HUMAN 2.4e-14 223_[2]_135 HDHA_ECOLI 2.7e-14 150_[2]_76 ENTA_ECOLI 1.2e-13 135_[2]_84 LIGD_PSEPA 5.2e-13 148_[2]_128 CSGA_MYXXA 1.2e-12 79_[2]_58 BA72_EUBSP 1.3e-12 148_[2]_72 ADH_DROME 5.6e-12 143_[2]_83 MAS1_AGRRA 1.4e-10 383_[2]_64 PCR_PEA 1.6e-08 17_[2]_353 FABI_ECOLI 4.3e-08 176_[2]_57 DHCA_HUMAN 1.2e-07 143_[2]_104 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VGNPGASAYSASKAAVRGLTESLALELAP MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF VGNPGASAYSASKAAVRGLTESLALELAP width=29 seqs=33 BUDC_KLETE ( 144) VGNPELAVYSSSKFAVRGLTQTAARDLAP 1 NODG_RHIME ( 144) IGNPGQTNYCASKAGMIGFSKSLAQEIAT 1 FVT1_HUMAN ( 178) LGLFGFTAYSASKFAIRGLAEALQMEVKP 1 DHES_HUMAN ( 147) MGLPFNDVYCASKFALEGLCESLAVLLLP 1 DHB3_HUMAN ( 190) FPWPLYSMYSASKAFVCAFSKALQEEYKA 1 YRTP_BACSU ( 147) RGAAVTSAYSASKFAVLGLTESLMQEVRK 1 HMTR_LEIMA ( 185) QPLLGYTIYTMAKGALEGLTRSAALELAP 1 HDE_CANTR ( 459) YGNFGQANYSSSKAGILGLSKTMAIEGAK 1 DHGB_BACME ( 152) IPWPLFVHYAASKGGMKLMTETLALEYAP 1 GUTD_ECOLI ( 146) VGSKHNSGYSAAKFGGVGLTQSLALDLAE 1 3BHD_COMTE ( 143) LPIEQYAGYSASKAAVSALTRAAALSCRK 1 DHII_HUMAN ( 175) VAYPMVAAYSASKFALDGFFSSIRKEYSV 1 BPHB_PSEPS ( 145) YPNGGGPLYTAAKQAIVGLVRELAFELAP 1 AP27_MOUSE ( 141) VTFPNLITYSSTKGAMTMLTKAMAMELGP 1 BDH_HUMAN ( 200) MANPARSPYCITKFGVEAFSDCLRYEMYP 1 YINL_LISMO ( 146) KAYPGGAVYGATKWAVRDLMEVLRMESAQ 1 FIXR_BRAJA ( 181) VHPFAGSAYATSKAALASLTRELAHDYAP 1 2BHD_STREX ( 144) MGLALTSSYGASKWGVRGLSKLAAVELGT 1 RFBB_NEIGO ( 157) TPYAPSSPYSASKAAADHLVRAWQRTYRL 1 YURA_MYXXA ( 152) FRGLPATRYSASKAFLSTFMESLRVDLRG 1 RIDH_KLEAE ( 152) VPVIWEPVYTASKFAVQAFVHTTRRQVAQ 1 DHMA_FLAS1 ( 157) MAEPEAAAYVAAKGGVAMLTRAMAVDLAR 1 DHB2_HUMAN ( 224) APMERLASYGSSKAAVTMFSSVMRLELSK 1 HDHA_ECOLI ( 151) NKNINMTSYASSKAAASHLVRNMAFDLGE 1 ENTA_ECOLI ( 136) TPRIGMSAYGASKAALKSLALSVGLELAG 1 LIGD_PSEPA ( 149) MGSALAGPYSAAKAASINLMEGYRQGLEK 1 CSGA_MYXXA ( 80) NTDGGAYAYRMSKAALNMAVRSMSTDLRP 1 BA72_EUBSP ( 149) FGSLSGVGYPASKASVIGLTHGLGREIIR 1 ADH_DROME ( 144) NAIYQVPVYSGTKAAVVNFTSSLAKLAPI 1 MAS1_AGRRA ( 384) RVLNPLVGYNMTKHALGGLTKTTQHVGWD 1 PCR_PEA ( 18) EGKIGASLKDSTLFGVSSLSDSLKGDFTS 1 FABI_ECOLI ( 177) MGPEGVRVNAISAGPIRTLAASGIKDFRK 1 DHCA_HUMAN ( 144) RALKSCSPELQQKFRSETITEEELVGLMN 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VGNPGASAYSASKAAVRGLTESLALELAP MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 20 w= 29 n= 9071 bayes= 8.09739 E= 3.1e-130 -151 -209 -378 -78 121 -433 -256 26 -65 -38 256 101 -377 8 74 -278 13 106 -279 104 56 -327 -273 -208 -394 177 68 -380 -30 -377 -322 -230 268 -150 -45 -235 7 -142 -374 -334 -143 -297 -51 -34 -35 -151 -159 -4 -20 77 8 196 41 -104 -40 49 -213 -132 238 153 5 -254 -273 67 114 -69 -197 96 31 -6 -226 -29 267 -151 -237 -227 -225 -262 -304 10 -75 -314 -209 33 -39 148 75 -351 -122 20 5 59 95 112 -37 5 -209 -138 140 -278 34 117 -290 -57 63 24 -206 -223 -199 33 105 51 -341 102 -55 -77 13 12 -295 156 76 -268 -58 -178 -311 -154 -180 -78 -160 -297 -243 -204 94 -129 -48 207 128 3 -313 7 79 -218 -345 -273 -255 25 66 -48 -251 -42 25 48 137 -211 -63 44 -63 104 -284 -264 -551 -474 -311 -79 -256 -482 -275 -587 -62 -549 -538 -18 -528 -342 -372 -377 -450 -608 -307 499 -37 217 -104 -243 -352 -25 -226 -366 -208 -193 -303 -49 -89 -186 -92 291 91 -186 -335 -308 256 -71 -396 -348 -325 -159 -331 -64 -349 -325 85 -352 -437 -70 -355 90 -114 -203 -315 -363 1 -197 -412 -454 -417 -410 -363 -450 -374 -468 -388 -248 -375 -44 -373 336 155 -467 -400 -396 -326 -315 -480 -428 -526 -518 -341 -413 413 -334 -417 -347 -433 -344 -55 -431 -391 -510 -373 -452 187 -385 -568 -570 304 69 75 -484 -528 -479 -463 -464 -563 2 -527 -425 -465 -496 262 -116 247 -188 -516 -486 51 121 -453 -459 -488 -473 -409 -445 -62 -430 -89 -70 -323 -347 -452 -498 -79 -195 -500 -422 -233 -160 -306 112 -389 132 166 -378 -410 -324 -384 -11 -250 212 -273 -263 -75 107 27 110 -355 -150 -150 45 46 -69 -279 -14 -295 44 145 85 13 -5 -331 -279 5 -323 -47 -167 -366 190 160 -358 -152 -149 192 62 -321 -122 -213 50 61 -358 -349 -299 -197 -414 -721 -635 259 -738 -525 -61 -612 286 32 -639 -590 -480 -573 -614 -507 -358 -403 -443 -45 110 -465 -452 -39 -492 -347 -250 -390 -318 148 -305 -429 -328 -396 155 290 66 -346 -355 -144 -325 27 197 -363 -364 159 -366 171 -150 -286 -176 -302 112 208 50 -215 -359 -337 -285 46 104 -284 53 -335 -80 -218 -307 -202 -152 -274 -35 -335 -173 -252 254 131 -61 -334 -303 3 -196 -496 -97 -227 -164 -303 -34 -385 220 256 -376 -406 -318 -379 -318 10 -80 148 13 186 -277 -249 -176 -352 -70 -180 -92 -22 -147 5 -206 -327 190 189 -68 -231 -324 -335 -296 -291 -239 -293 -58 63 -155 158 -60 77 85 158 -242 -342 152 114 -238 -62 76 -295 12 -395 -560 235 309 -584 -67 -333 -527 -271 -71 -457 -331 -415 27 -378 -99 -87 -150 -556 -491 -156 123 -496 -418 70 -72 -303 31 -385 219 33 -376 -406 -319 -379 -97 -250 25 -270 228 150 -297 -214 -31 -347 -17 -155 -94 43 -148 5 -177 -48 -98 168 5 -60 -335 139 5 -141 -318 -47 34 -355 -68 -149 -97 170 -150 -280 -14 261 112 34 -60 13 -140 -331 -279 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VGNPGASAYSASKAAVRGLTESLALELAP MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 20 w= 29 nsites= 33 E= 3.1e-130 0.030303 0.000000 0.000000 0.030303 0.090909 0.000000 0.000000 0.060606 0.030303 0.060606 0.181818 0.090909 0.000000 0.030303 0.090909 0.000000 0.060606 0.181818 0.000000 0.060606 0.181818 0.000000 0.000000 0.000000 0.000000 0.363636 0.030303 0.000000 0.030303 0.000000 0.000000 0.000000 0.272727 0.000000 0.030303 0.000000 0.060606 0.030303 0.000000 0.000000 0.030303 0.000000 0.030303 0.030303 0.030303 0.030303 0.000000 0.060606 0.030303 0.181818 0.030303 0.181818 0.060606 0.000000 0.030303 0.090909 0.000000 0.030303 0.060606 0.090909 0.121212 0.000000 0.000000 0.090909 0.090909 0.060606 0.000000 0.121212 0.060606 0.090909 0.000000 0.030303 0.303030 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.030303 0.060606 0.000000 0.000000 0.060606 0.030303 0.303030 0.030303 0.000000 0.000000 0.121212 0.030303 0.060606 0.090909 0.060606 0.030303 0.060606 0.000000 0.030303 0.030303 0.000000 0.151515 0.030303 0.000000 0.030303 0.060606 0.121212 0.000000 0.000000 0.000000 0.121212 0.060606 0.060606 0.000000 0.060606 0.030303 0.030303 0.060606 0.090909 0.000000 0.090909 0.212121 0.000000 0.030303 0.000000 0.000000 0.030303 0.000000 0.030303 0.000000 0.000000 0.000000 0.000000 0.090909 0.000000 0.030303 0.303030 0.151515 0.090909 0.000000 0.030303 0.212121 0.000000 0.000000 0.000000 0.000000 0.121212 0.030303 0.030303 0.000000 0.060606 0.030303 0.060606 0.121212 0.000000 0.030303 0.090909 0.030303 0.181818 0.000000 0.000000 0.000000 0.000000 0.000000 0.030303 0.000000 0.000000 0.000000 0.000000 0.030303 0.000000 0.000000 0.030303 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.909091 0.121212 0.090909 0.030303 0.000000 0.000000 0.121212 0.000000 0.000000 0.000000 0.030303 0.000000 0.030303 0.030303 0.000000 0.030303 0.393939 0.090909 0.030303 0.000000 0.000000 0.575758 0.000000 0.000000 0.000000 0.000000 0.030303 0.000000 0.060606 0.000000 0.000000 0.090909 0.000000 0.000000 0.030303 0.000000 0.181818 0.030303 0.000000 0.000000 0.000000 0.151515 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.030303 0.000000 0.636364 0.181818 0.000000 0.000000 0.000000 0.030303 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.939394 0.030303 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.424242 0.000000 0.000000 0.000000 0.303030 0.151515 0.030303 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.030303 0.000000 0.000000 0.000000 0.000000 0.060606 0.000000 0.606061 0.000000 0.000000 0.000000 0.060606 0.242424 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.030303 0.000000 0.030303 0.030303 0.000000 0.000000 0.000000 0.000000 0.060606 0.000000 0.000000 0.000000 0.000000 0.030303 0.000000 0.121212 0.000000 0.242424 0.090909 0.000000 0.000000 0.000000 0.000000 0.060606 0.000000 0.393939 0.000000 0.000000 0.060606 0.030303 0.060606 0.121212 0.000000 0.030303 0.000000 0.090909 0.060606 0.060606 0.000000 0.030303 0.000000 0.030303 0.151515 0.121212 0.060606 0.090909 0.000000 0.000000 0.121212 0.000000 0.030303 0.000000 0.000000 0.393939 0.060606 0.000000 0.000000 0.030303 0.121212 0.060606 0.000000 0.000000 0.000000 0.090909 0.090909 0.000000 0.000000 0.000000 0.030303 0.000000 0.000000 0.000000 0.242424 0.000000 0.000000 0.030303 0.000000 0.666667 0.030303 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.090909 0.030303 0.000000 0.000000 0.030303 0.000000 0.000000 0.000000 0.000000 0.000000 0.090909 0.000000 0.000000 0.000000 0.000000 0.212121 0.393939 0.151515 0.000000 0.000000 0.030303 0.000000 0.060606 0.242424 0.000000 0.000000 0.060606 0.000000 0.181818 0.030303 0.000000 0.000000 0.000000 0.060606 0.242424 0.090909 0.000000 0.000000 0.000000 0.000000 0.181818 0.030303 0.000000 0.090909 0.000000 0.060606 0.000000 0.000000 0.000000 0.030303 0.000000 0.030303 0.000000 0.000000 0.000000 0.363636 0.151515 0.060606 0.000000 0.000000 0.121212 0.000000 0.000000 0.030303 0.000000 0.030303 0.000000 0.030303 0.000000 0.454545 0.181818 0.000000 0.000000 0.000000 0.000000 0.000000 0.060606 0.030303 0.030303 0.030303 0.454545 0.000000 0.000000 0.000000 0.000000 0.060606 0.000000 0.030303 0.030303 0.030303 0.030303 0.000000 0.000000 0.121212 0.212121 0.030303 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.030303 0.060606 0.030303 0.060606 0.030303 0.090909 0.181818 0.090909 0.000000 0.000000 0.090909 0.121212 0.000000 0.030303 0.151515 0.000000 0.030303 0.000000 0.000000 0.272727 0.484848 0.000000 0.060606 0.000000 0.000000 0.000000 0.060606 0.000000 0.000000 0.000000 0.030303 0.000000 0.030303 0.030303 0.030303 0.000000 0.000000 0.030303 0.030303 0.000000 0.000000 0.060606 0.060606 0.000000 0.060606 0.000000 0.454545 0.030303 0.000000 0.000000 0.000000 0.000000 0.030303 0.000000 0.090909 0.000000 0.151515 0.363636 0.000000 0.000000 0.030303 0.000000 0.090909 0.000000 0.030303 0.060606 0.030303 0.030303 0.000000 0.030303 0.000000 0.181818 0.060606 0.030303 0.000000 0.030303 0.030303 0.030303 0.000000 0.030303 0.060606 0.000000 0.060606 0.000000 0.030303 0.181818 0.030303 0.000000 0.030303 0.303030 0.060606 0.060606 0.030303 0.060606 0.030303 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VGNPGASAYSASKAAVRGLTESLALELAP MEME-2 regular expression -------------------------------------------------------------------------------- X[GP]XPGX[SA]AYSASK[AF][AG][VL]XG[LF][TS][ER]SL[AR]X[ED]LAP -------------------------------------------------------------------------------- Time 1.01 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 2BHD_STREX 1.40e-20 5_[1(3.07e-12)]_117_[2(1.69e-15)]_\ 83 3BHD_COMTE 1.83e-23 5_[1(2.94e-14)]_116_[2(2.07e-16)]_\ 82 ADH_DROME 1.67e-14 5_[1(1.54e-09)]_117_[2(5.59e-12)]_\ 83 AP27_MOUSE 2.34e-22 6_[1(1.55e-13)]_113_[2(5.70e-16)]_\ 75 BA72_EUBSP 1.45e-19 5_[1(4.39e-14)]_122_[2(1.35e-12)]_\ 72 BDH_HUMAN 9.72e-23 54_[1(2.16e-14)]_124_[2(7.93e-16)]_\ 115 BPHB_PSEPS 9.71e-23 4_[1(4.85e-14)]_119_[2(5.70e-16)]_\ 102 BUDC_KLETE 6.66e-32 1_[1(8.78e-18)]_121_[2(2.09e-21)]_\ 69 DHES_HUMAN 1.48e-24 1_[1(1.41e-13)]_124_[2(1.92e-18)]_\ 152 DHGB_BACME 9.84e-24 6_[1(3.25e-14)]_124_[2(9.21e-17)]_\ 82 DHII_HUMAN 2.30e-25 33_[1(1.42e-16)]_120_[2(3.65e-16)]_\ 89 DHMA_FLAS1 1.26e-21 13_[1(3.98e-14)]_122_[2(9.85e-15)]_\ 85 ENTA_ECOLI 1.20e-22 4_[1(3.55e-16)]_110_[2(1.22e-13)]_\ 84 FIXR_BRAJA 4.16e-23 35_[1(1.04e-14)]_124_[2(1.10e-15)]_\ 69 GUTD_ECOLI 5.09e-19 1_[1(1.19e-09)]_123_[2(1.65e-16)]_\ 85 HDE_CANTR 5.88e-25 7_[1(1.86e-12)]_126_[2(9.55e-13)]_\ 138_[1(2.75e-16)]_116_[2(4.52e-17)]_419 HDHA_ECOLI 1.36e-22 10_[1(1.74e-15)]_119_[2(2.66e-14)]_\ 76 LIGD_PSEPA 1.56e-17 5_[1(8.76e-12)]_122_[2(5.18e-13)]_\ 128 NODG_RHIME 1.22e-24 5_[1(5.43e-12)]_117_[2(7.63e-20)]_\ 73 RIDH_KLEAE 7.97e-23 13_[1(3.87e-15)]_117_[2(7.27e-15)]_\ 69 YINL_LISMO 3.99e-26 4_[1(1.41e-17)]_120_[2(8.85e-16)]_\ 74 YRTP_BACSU 6.61e-27 5_[1(3.55e-16)]_120_[2(6.21e-18)]_\ 63 CSGA_MYXXA 1.13e-12 12_[1(1.42e-06)]_46_[2(1.24e-12)]_\ 58 DHB2_HUMAN 8.22e-22 81_[1(4.84e-15)]_121_[2(2.41e-14)]_\ 135 DHB3_HUMAN 1.74e-24 47_[1(6.52e-14)]_121_[2(5.46e-18)]_\ 92 DHCA_HUMAN 4.84e-15 3_[1(1.76e-14)]_119_[2(1.16e-07)]_\ 12_[2(2.98e-05)]_63 FABI_ECOLI 1.30e-10 5_[1(1.99e-09)]_150_[2(4.26e-08)]_\ 57 FVT1_HUMAN 1.68e-25 31_[1(4.39e-14)]_125_[2(6.49e-19)]_\ 126 HMTR_LEIMA 1.15e-21 5_[1(6.91e-12)]_158_[2(4.52e-17)]_\ 74 MAS1_AGRRA 1.02e-14 244_[1(9.48e-12)]_118_[2(1.44e-10)]_\ 64 PCR_PEA 1.39e-15 17_[2(1.61e-08)]_39_[1(1.58e-14)]_\ 293 RFBB_NEIGO 2.10e-19 5_[1(1.20e-11)]_130_[2(3.54e-15)]_\ 161 YURA_MYXXA 3.23e-14 115_[1(3.43e-06)]_15_[2(4.83e-15)]_\ 78 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (2) found. ******************************************************************************** CPU: Timothys-Mac-Mini.local ********************************************************************************