<?xml version='1.0' encoding='UTF-8' standalone='yes'?>
<mast version="5.0.0" release="Wed Oct 11 17:39:42 2017 -0700">
	<command_line><arg>mast</arg><arg>-oc</arg><arg>results/mast14</arg><arg>-nostatus</arg><arg>meme/meme.lipocalin.classic.oops.xml</arg><arg>common/lipocalin.s</arg></command_line>
	<settings strand_handling="unstranded" max_correlation="0.60" remove_correlated="n" max_seq_evalue="10" adjust_hit="n" max_hit_pvalue="0.0001" max_weak_pvalue="0.0001"/>
	<alphabet name="Protein" like="protein">
		<letter id="A" symbol="A" name="Alanine" colour="0000CC"/>
		<letter id="C" symbol="C" name="Cysteine" colour="0000CC"/>
		<letter id="D" symbol="D" name="Aspartic acid" colour="FF00FF"/>
		<letter id="E" symbol="E" name="Glutamic acid" colour="FF00FF"/>
		<letter id="F" symbol="F" name="Phenylalanine" colour="0000CC"/>
		<letter id="G" symbol="G" name="Glycine" colour="FFB300"/>
		<letter id="H" symbol="H" name="Histidine" colour="FFCCCC"/>
		<letter id="I" symbol="I" name="Isoleucine" colour="0000CC"/>
		<letter id="K" symbol="K" name="Lysine" colour="CC0000"/>
		<letter id="L" symbol="L" name="Leucine" colour="0000CC"/>
		<letter id="M" symbol="M" name="Methionine" colour="0000CC"/>
		<letter id="N" symbol="N" name="Asparagine" colour="008000"/>
		<letter id="P" symbol="P" name="Proline" colour="FFFF00"/>
		<letter id="Q" symbol="Q" name="Glutamine" colour="008000"/>
		<letter id="R" symbol="R" name="Arginine" colour="CC0000"/>
		<letter id="S" symbol="S" name="Serine" colour="008000"/>
		<letter id="T" symbol="T" name="Threonine" colour="008000"/>
		<letter id="V" symbol="V" name="Valine" colour="0000CC"/>
		<letter id="W" symbol="W" name="Tryptophan" colour="0000CC"/>
		<letter id="Y" symbol="Y" name="Tyrosine" colour="33E6CC"/>
		<letter id="X" symbol="X" aliases="*." equals="ACDEFGHIKLMNPQRSTVWY" name="Any amino acid"/>
		<letter id="B" symbol="B" equals="DN" name="Asparagine or Aspartic acid"/>
		<letter id="Z" symbol="Z" equals="EQ" name="Glutamine or Glutamic acid"/>
		<letter id="J" symbol="J" equals="IL" name="Leucine or Isoleucine"/>
	</alphabet>
	<background source="--nrdb--" A="0.0730919" C="0.0181455" D="0.051688" E="0.0622785" F="0.0402434" G="0.0692596" H="0.0224055" I="0.056227" K="0.058435" L="0.0916218" M="0.0230443" N="0.0460321" P="0.0506238" Q="0.0407153" R="0.0518462" S="0.073729" T="0.0593523" V="0.0642985" W="0.0133282" Y="0.0326497"/>
	<motif_dbs>
		<motif_db source="meme/meme.lipocalin.classic.oops.xml" last_mod_date="Fri Oct 20 16:32:11 2017">
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		</motif_db>
	</motif_dbs>
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			<pos A="106" C="-271" D="-98" E="173" F="-260" G="-150" H="-94" I="-198" K="-87" L="-214" M="-101" N="-85" P="-134" Q="26" R="-13" S="137" T="156" V="-184" W="-300" Y="-255"/>
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		<motif db="0" id="FWVLDTDYKNY" alt="MEME-2" length="11" nsites="5" evalue="1.1e-002">
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	</motifs>
	<correlations>
		<correlation idx_a="0" idx_b="1" value="0.31"/>
	</correlations>
	<sequence_dbs>
		<sequence_db source="common/lipocalin.s" last_mod_date="Tue Feb  2 11:33:11 2016" seq_count="5" residue_count="903"/>
	</sequence_dbs>
	<sequences>
		<sequence db="0" name="ICYA_MANSE" comment="" length="189">
			<score strand="both" combined_pvalue="1.06e-30" evalue="5.3e-30"/>
			<seg start="1">
				<data>
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				<data>
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				<hit pos="103" idx="1" pvalue="1.8e-13" match="+++++++++++"/>
			</seg>
		</sequence>
		<sequence db="0" name="BBP_PIEBR" comment="" length="173">
			<score strand="both" combined_pvalue="1.39e-28" evalue="7e-28"/>
			<seg start="1">
				<data>
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				<hit pos="6" idx="0" pvalue="2.1e-24" match="++++++++++++++++++++++++++"/>
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			<seg start="76">
				<data>
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				<hit pos="99" idx="1" pvalue="3.9e-11" match="+++++++++++"/>
			</seg>
		</sequence>
		<sequence db="0" name="RETB_BOVIN" comment="" length="183">
			<score strand="both" combined_pvalue="7.80e-24" evalue="3.9e-23"/>
			<seg start="1">
				<data>
ERDCRVSSFRVKENFDKARFAGTWYAMAKKDPEGLFLQDNIVAEFSVDENGHMSATAKGRVRLLNNWDVCADMVG
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				<hit pos="4" idx="0" pvalue="2.3e-19" match="+++++++++++++ ++++++++++++"/>
			</seg>
			<seg start="76">
				<data>
TFTDTEDPAKFKMKYWGVASFLQKGNDDHWIIDTDYETFAVQYSCRLLNLDGTCADSYSFVFARDPSGFSPEVQK
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				<hit pos="104" idx="1" pvalue="2.1e-11" match="+++++++++++"/>
			</seg>
		</sequence>
		<sequence db="0" name="LACB_BOVIN" comment="" length="178">
			<score strand="both" combined_pvalue="2.85e-21" evalue="1.4e-20"/>
			<seg start="1">
				<data>
MKCLLLALALTCGAQALIVTQTMKGLDIQKVAGTWYSLAMAASDISLLDAQSAPLRVYVEELKPTPEGDLEILLQ
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				<hit pos="15" idx="0" pvalue="3.5e-18" match="+++++++++++ ++++++++++++++"/>
			</seg>
			<seg start="76">
				<data>
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				<hit pos="108" idx="1" pvalue="6.1e-10" match="+ +++++++ +"/>
			</seg>
		</sequence>
		<sequence db="0" name="MUP2_MOUSE" comment="" length="180">
			<score strand="both" combined_pvalue="1.38e-20" evalue="6.9e-20"/>
			<seg start="1">
				<data>
MKMLLLLCLGLTLVCVHAEEASSTGRNFNVEKINGEWHTIILASDKREKIEDNGNFRLFLEQIHVLEKSLVLKFH
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				<hit pos="17" idx="0" pvalue="7.8e-17" match="++++++++++++ +++++++++++++"/>
			</seg>
			<seg start="76">
				<data>
TVRDEECSELSMVADKTEKAGEYSVTYDGFNTFTIPKTDYDNFLMAHLINEKDGETFQLMGLYGREPDLSSDIKE
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				<hit pos="108" idx="1" pvalue="1.3e-10" match="+++++++++++"/>
			</seg>
		</sequence>
	</sequences>
	<runtime host="Timothys-iMac.rd.unr.edu" when="Mon Oct 23 13:15:50 2017" cycles="9922" seconds="0.010"/>
</mast>
