<?xml version='1.0' encoding='UTF-8' standalone='yes'?>
<mast version="5.0.0" release="Wed Oct 11 17:39:42 2017 -0700">
	<command_line><arg>mast</arg><arg>-oc</arg><arg>results/mast11</arg><arg>-nostatus</arg><arg>meme/meme.farntrans5.classic.oops.xml</arg><arg>common/farntrans5.s</arg></command_line>
	<settings strand_handling="unstranded" max_correlation="0.60" remove_correlated="n" max_seq_evalue="10" adjust_hit="n" max_hit_pvalue="0.0001" max_weak_pvalue="0.0001"/>
	<alphabet name="Protein" like="protein">
		<letter id="A" symbol="A" name="Alanine" colour="0000CC"/>
		<letter id="C" symbol="C" name="Cysteine" colour="0000CC"/>
		<letter id="D" symbol="D" name="Aspartic acid" colour="FF00FF"/>
		<letter id="E" symbol="E" name="Glutamic acid" colour="FF00FF"/>
		<letter id="F" symbol="F" name="Phenylalanine" colour="0000CC"/>
		<letter id="G" symbol="G" name="Glycine" colour="FFB300"/>
		<letter id="H" symbol="H" name="Histidine" colour="FFCCCC"/>
		<letter id="I" symbol="I" name="Isoleucine" colour="0000CC"/>
		<letter id="K" symbol="K" name="Lysine" colour="CC0000"/>
		<letter id="L" symbol="L" name="Leucine" colour="0000CC"/>
		<letter id="M" symbol="M" name="Methionine" colour="0000CC"/>
		<letter id="N" symbol="N" name="Asparagine" colour="008000"/>
		<letter id="P" symbol="P" name="Proline" colour="FFFF00"/>
		<letter id="Q" symbol="Q" name="Glutamine" colour="008000"/>
		<letter id="R" symbol="R" name="Arginine" colour="CC0000"/>
		<letter id="S" symbol="S" name="Serine" colour="008000"/>
		<letter id="T" symbol="T" name="Threonine" colour="008000"/>
		<letter id="V" symbol="V" name="Valine" colour="0000CC"/>
		<letter id="W" symbol="W" name="Tryptophan" colour="0000CC"/>
		<letter id="Y" symbol="Y" name="Tyrosine" colour="33E6CC"/>
		<letter id="X" symbol="X" aliases="*." equals="ACDEFGHIKLMNPQRSTVWY" name="Any amino acid"/>
		<letter id="B" symbol="B" equals="DN" name="Asparagine or Aspartic acid"/>
		<letter id="Z" symbol="Z" equals="EQ" name="Glutamine or Glutamic acid"/>
		<letter id="J" symbol="J" equals="IL" name="Leucine or Isoleucine"/>
	</alphabet>
	<background source="--nrdb--" A="0.0730919" C="0.0181455" D="0.051688" E="0.0622785" F="0.0402434" G="0.0692596" H="0.0224055" I="0.056227" K="0.058435" L="0.0916218" M="0.0230443" N="0.0460321" P="0.0506238" Q="0.0407153" R="0.0518462" S="0.073729" T="0.0593523" V="0.0642985" W="0.0133282" Y="0.0326497"/>
	<motif_dbs>
		<motif_db source="meme/meme.farntrans5.classic.oops.xml" last_mod_date="Fri Oct 20 16:31:32 2017">
			<background A="0.0609182" C="0.0370112" D="0.0615183" E="0.060418" F="0.0437132" G="0.0750223" H="0.0302093" I="0.0526158" K="0.0505151" L="0.113033" M="0.0208065" N="0.0339103" P="0.0411124" Q="0.0385117" R="0.0406123" S="0.077623" T="0.0458138" V="0.0573171" W="0.0182058" Y="0.0411124"/>
		</motif_db>
	</motif_dbs>
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	</motifs>
	<correlations>
		<correlation idx_a="0" idx_b="1" value="0.46"/>
	</correlations>
	<sequence_dbs>
		<sequence_db source="common/farntrans5.s" last_mod_date="Tue Feb  2 11:33:11 2016" seq_count="5" residue_count="1900"/>
	</sequence_dbs>
	<sequences>
		<sequence db="0" name="RATRABGERB" comment="Rat rab geranylgeranyl transferase beta-subunit" length="331">
			<score strand="both" combined_pvalue="2.94e-45" evalue="1.5e-44"/>
			<seg start="76">
				<data>
KSCQHECGGVSASIGHDPHLLYTLSAVQILTLYDSIHVINVDKVVAYVQSLQKEDGSFAGDIWGEIDTRFSFCAV
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				<hit pos="77" idx="1" pvalue="5.3e-05" match="  + + ++ +   + +  +  ++  +  +"/>
				<hit pos="130" idx="0" pvalue="5.3e-05" match="++ + +      ++  ++  "/>
			</seg>
			<seg start="226">
				<data>
SGGLNGRPEKLPDVCYSWWVLASLKIIGRLHWIDREKLRSFILACQDEETGGFADRPGDMVDPFHTLFGIAGLSL
				</data>
				<hit pos="226" idx="0" pvalue="2.0e-22" match="++++++++++++++++++++"/>
				<hit pos="270" idx="1" pvalue="1.4e-30" match="+++++++++++++++++++++++++++++"/>
			</seg>
		</sequence>
		<sequence db="0" name="BET2_YEAST" comment="YPT1/SEC4 PROTEINS GERANYLGERANYLTRANSFERASE BETA SUBUNIT (EC 2." length="325">
			<score strand="both" combined_pvalue="1.72e-44" evalue="8.6e-44"/>
			<seg start="1">
				<data>
MSGSLTLLKEKHIRYIESLDTNKHNFEYWLTEHLRLNGIYWGLTALCVLDSPETFVKEEVISFVLSCWDDKYGAF
APFPRHDAHLLTTLSAVQILATYDALDVLGKDRKVRLISFIRGNQLEDGSFQGDRFGEVDTRFVYTALSALSILG
				</data>
				<hit pos="67" idx="1" pvalue="7.3e-06" match="+ + + + ++  +  ++ +  ++  +  +"/>
				<hit pos="123" idx="0" pvalue="4.0e-05" match="++ +++     +++   +  "/>
			</seg>
			<seg start="151">
				<data>
ELTSEVVDPAVDFVLKCYNFDGGFGLCPNAESHAAQAFTCLGALAIANKLDMLSDDQLEEIGWWLCERQLPEGGL
NGRPSKLPDVCYSWWVLSSLAIIGRLDWINYEKLTEFILKCQDEKKGGISDRPENEVDVFHTVFGVAGLSLMGYD
				</data>
				<hit pos="171" idx="0" pvalue="3.7e-05" match="++++   ++       ++ +"/>
				<hit pos="222" idx="0" pvalue="1.3e-23" match="++++++++++++++++++++"/>
				<hit pos="266" idx="1" pvalue="1.3e-28" match="+++++++++++++++++++++++++++++"/>
			</seg>
		</sequence>
		<sequence db="0" name="RAM1_YEAST" comment="PROTEIN FARNESYLTRANSFERASE BETA SUBUNIT (EC 2.5.1.-) (CAAX FARN" length="431">
			<score strand="both" combined_pvalue="2.74e-40" evalue="1.4e-39"/>
			<seg start="226">
				<data>
LTEELTEGVLNYLKNCQNYEGGFGSCPHVDEAHGGYTFCATASLAILRSMDQINVEKLLEWSSARQLQEERGFCG
RSNKLVDGCYSFWVGGSAAILEAFGYGQCFNKHALRDYILYCCQEKEQPGLRDKPGAHSDFYHTNYCLLGLAVAE
				</data>
				<hit pos="295" idx="0" pvalue="3.3e-22" match="++++++++++++++++++++"/>
				<hit pos="343" idx="1" pvalue="5.1e-26" match="++++++++++++++++++++++++++ ++"/>
			</seg>
		</sequence>
		<sequence db="0" name="PFTB_RAT" comment="PROTEIN FARNESYLTRANSFERASE BETA SUBUNIT (EC 2.5.1.-) (CAAX FARNES" length="437">
			<score strand="both" combined_pvalue="3.55e-40" evalue="1.8e-39"/>
			<seg start="76">
				<data>
EKHFHYLKRGLRQLTDAYECLDASRPWLCYWILHSLELLDEPIPQIVATDVCQFLELCQSPDGGFGGGPGQYPHL
APTYAAVNALCIIGTEEAYNVINREKLLQYLYSLKQPDGSFLMHVGGEVDVRSAYCAASVASLTNIITPDLFEGT
				</data>
				<hit pos="132" idx="1" pvalue="8.5e-06" match="  + + +++   +++   +  +   + ++"/>
			</seg>
			<seg start="226">
				<data>
AEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKKERSLNLKSLLQWVTSRQMRFEGGFQGRCNKLVDGCY
SFWQAGLLPLLHRALHAQGDPALSMSHWMFHQQALQEYILMCCQCPAGGLLDKPGKSRDFYHTCYCLSGLSIAQH
				</data>
				<hit pos="231" idx="1" pvalue="4.3e-07" match="  +   +++   ++ ++    +  +++++"/>
				<hit pos="285" idx="0" pvalue="3.9e-23" match="++++++++++++++++++++"/>
				<hit pos="342" idx="1" pvalue="5.6e-25" match="+ +++++++ +++++++++++++++++++"/>
			</seg>
		</sequence>
		<sequence db="0" name="CAL1_YEAST" comment="RAS PROTEINS GERANYLGERANYLTRANSFERASE (EC 2.5.1.-) (PROTEIN GER" length="376">
			<score strand="both" combined_pvalue="7.50e-31" evalue="3.8e-30"/>
			<seg start="226">
				<data>
TLALLSSLEKLSDKFKEDTITWLLHRQVSSHGCMKFESELNASYDQSDDGGFQGRENKFADTCYAFWCLNSLHLL
				</data>
				<hit pos="274" idx="0" pvalue="2.6e-20" match="++++++++++++++++++++"/>
			</seg>
			<seg start="301">
				<data>
TKDWKMLCQTELVTNYLLDRTQKTLTGGFSKNDEEDADLYHSCLGSAALALIEGKFNGELCIPQEIFNDFSKRCC
				</data>
				<hit pos="321" idx="1" pvalue="3.1e-18" match=" +++ +++++ ++++++++++++ +++++"/>
			</seg>
		</sequence>
	</sequences>
	<runtime host="Timothys-iMac.rd.unr.edu" when="Mon Oct 23 13:15:49 2017" cycles="10786" seconds="0.011"/>
</mast>
