******************************************************************************** MAST - Motif Alignment and Search Tool ******************************************************************************** MAST version 5.4.0 (Release date: Tue Mar 9 17:38:20 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MAST software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Michael Gribskov, "Combining evidence using p-values: application to sequence homology searches", Bioinformatics, 14(48-54), 1998. ******************************************************************************** ******************************************************************************** DATABASE AND MOTIFS ******************************************************************************** DATABASE Klf1-200.fa (nucleotide) Last updated on Sun Mar 1 14:58:12 2020 Database contains 200 sequences, 100000 residues Scores for positive and reverse complement strands are combined. MOTIFS meme.Klf1-200.cd.zoops.html (nucleotide) MOTIF ID ALT ID WIDTH BEST POSSIBLE MATCH ----- ----------------- ------ ----- ------------------- 1 GCCACACCCWKCYNNBH MEME-1 17 GCCACACCCAGCTCCCT 2 SAAWCCMCAYY MEME-2 11 CAATCCCCATC PAIRWISE MOTIF CORRELATIONS: MOTIF 1 ----- ----- 2 0.45 No overly similar pairs (correlation > 0.60) found. Random model letter frequencies (from non-redundant database): A 0.274 C 0.225 G 0.225 T 0.274 ******************************************************************************** ******************************************************************************** SECTION I: HIGH-SCORING SEQUENCES ******************************************************************************** - Each of the following 89 sequences has E-value less than 10. - The E-value of a sequence is the expected number of sequences in a random database of the same size that would match the motifs as well as the sequence does and is equal to the combined p-value of the sequence times the number of sequences in the database. - The combined p-value of a sequence measures the strength of the match of the sequence to all the motifs and is calculated by o finding the score of the single best match of each motif to the sequence (best matches may overlap), o calculating the sequence p-value of each score, o forming the product of the p-values, o taking the p-value of the product. - The sequence p-value of a score is defined as the probability of a random sequence of the same length containing some match with as good or better a score. - The score for the match of a position in a sequence to a motif is computed by by summing the appropriate entry from each column of the position-dependent scoring matrix that represents the motif. - Sequences shorter than one or more of the motifs are skipped. - The table is sorted by increasing E-value. ******************************************************************************** SEQUENCE NAME DESCRIPTION E-VALUE LENGTH ------------- ----------- -------- ------ chr9:120025371-120025871 0.0028 500 chr1:137838164-137838664 0.0059 500 chr6:121187425-121187925 0.0082 500 chr11:77795184-77795684 0.0091 500 chr14:79702844-79703344 0.013 500 chr11:117187372-117187872 0.021 500 chr1:156887119-156887619 0.031 500 chr6:72223026-72223526 0.038 500 chr13:3866266-3866766 0.038 500 chr12:27135944-27136444 0.041 500 chr1:169314208-169314708 0.05 500 chr6:35303481-35303981 0.085 500 chr17:24289205-24289705 0.099 500 chr11:57590460-57590960 0.11 500 chr10:93585404-93585904 0.12 500 chr17:5112057-5112557 0.26 500 chr11:105013714-105014214 0.28 500 chr10:110604369-110604869 0.29 500 chr18:23982470-23982970 0.29 500 chr12:114390660-114391160 0.34 500 chr7:151917814-151918314 0.43 500 chr15:79757891-79758391 0.46 500 chr11:60988820-60989320 0.56 500 chr7:91033422-91033922 0.59 500 chr12:112796794-112797294 0.59 500 chr15:81700367-81700867 0.71 500 chr1:169322898-169323398 0.88 500 chr8:83025150-83025650 0.92 500 chr3:104843905-104844405 0.94 500 chr5:138127197-138127697 0.96 500 chr7:111007530-111008030 0.96 500 chr6:81915769-81916269 1.1 500 chr18:80416880-80417380 1.1 500 chr15:91082416-91082916 1.1 500 chr7:104332488-104332988 1.1 500 chr1:133343883-133344383 1.2 500 chr5:45951565-45952065 1.2 500 chr10:126642277-126642777 1.2 500 chr10:59256089-59256589 1.3 500 chr9:98389943-98390443 1.3 500 chr7:105490727-105491227 1.4 500 chr7:103853792-103854292 1.5 500 chr10:57252236-57252736 1.5 500 chr9:21362671-21363171 1.7 500 chr19:56465963-56466463 1.7 500 chr13:57679178-57679678 1.9 500 chr1:33631214-33631714 1.9 500 chr4:43977111-43977611 1.9 500 chr10:60612190-60612690 1.9 500 chr5:65202593-65203093 2 500 chr1:134264178-134264678 2 500 chr5:37127175-37127675 2.1 500 chr8:97323995-97324495 2.2 500 chr12:41693216-41693716 2.2 500 chr9:20561645-20562145 2.4 500 chr9:57618594-57619094 2.5 500 chr1:75175760-75176260 2.5 500 chr9:34860987-34861487 2.5 500 chr17:28960252-28960752 2.5 500 chr7:101244829-101245329 2.6 500 chr2:103728071-103728571 2.7 500 chr9:102674395-102674895 2.8 500 chr10:128184604-128185104 3.3 500 chr5:33616214-33616714 3.3 500 chr13:112863645-112864145 3.6 500 chr8:3522196-3522696 3.6 500 chr7:38970375-38970875 3.9 500 chr9:24715045-24715545 4.1 500 chr4:149892777-149893277 4.1 500 chr19:5845899-5846399 4.4 500 chr1:173447614-173448114 4.4 500 chr11:69714224-69714724 4.5 500 chr4:135733850-135734350 4.5 500 chr7:110976195-110976695 4.6 500 chr13:54345922-54346422 4.6 500 chr7:19832207-19832707 4.9 500 chr2:25148316-25148816 5 500 chr3:97461668-97462168 5.3 500 chr3:107899566-107900066 5.7 500 chr17:47735006-47735506 5.8 500 chr3:88305500-88306000 5.9 500 chr1:183146440-183146940 6.1 500 chr16:49839621-49840121 6.4 500 chr8:19984030-19984530 6.4 500 chr6:145703215-145703715 7.4 500 chr15:58719281-58719781 7.4 500 chr6:135115628-135116128 7.5 500 chr11:32678204-32678704 8.3 500 chr14:61272713-61273213 9.6 500 ******************************************************************************** ******************************************************************************** SECTION II: MOTIF DIAGRAMS ******************************************************************************** - The ordering and spacing of all non-overlapping motif occurrences are shown for each high-scoring sequence listed in Section I. - A motif occurrence is defined as a position in the sequence whose match to the motif has POSITION p-value less than 0.0001. - The POSITION p-value of a match is the probability of a single random subsequence of the length of the motif scoring at least as well as the observed match. - For each sequence, all motif occurrences are shown unless there are overlaps. In that case, a motif occurrence is shown only if its p-value is less than the product of the p-values of the other (lower-numbered) motif occurrences that it overlaps. - The table also shows the E-value of each sequence. - Spacers and motif occurences are indicated by o -d- `d' residues separate the end of the preceding motif occurrence and the start of the following motif occurrence o [sn] occurrence of motif `n' with p-value less than 0.0001. A minus sign indicates that the occurrence is on the reverse complement strand. ******************************************************************************** SEQUENCE NAME E-VALUE MOTIF DIAGRAM ------------- -------- ------------- chr9:120025371-120025871 0.0028 169-[+2]-14-[-1]-289 chr1:137838164-137838664 0.0059 4-[-1]-198-[-1]-58-[+1]-189 chr6:121187425-121187925 0.0082 379-[+1]-81-[+2]-12 chr11:77795184-77795684 0.0091 24-[+2]-182-[-2]-15-[-1]-240 chr14:79702844-79703344 0.013 254-[+1]-229 chr11:117187372-117187872 0.021 203-[-2]-24-[-1]-64-[-1]-69-[-1]-78 chr1:156887119-156887619 0.031 287-[+2]-6-[+1]-179 chr6:72223026-72223526 0.038 48-[+2]-291-[+1]-133 chr13:3866266-3866766 0.038 237-[-1]-16-[+1]-213 chr12:27135944-27136444 0.041 282-[+1]-201 chr1:169314208-169314708 0.05 196-[+2]-12-[+1]-264 chr6:35303481-35303981 0.085 199-[+2]-219-[+1]-54 chr17:24289205-24289705 0.099 242-[-1]-7-[+2]-65-[+2]-125-[-1]-5 chr11:57590460-57590960 0.11 239-[+2]-104-[+1]-129 chr10:93585404-93585904 0.12 215-[-1]-58-[-2]-199 chr17:5112057-5112557 0.26 245-[-1]-171-[-2]-6-[-2]-39 chr11:105013714-105014214 0.28 301-[-1]-104-[-1]-61 chr10:110604369-110604869 0.29 228-[-1]-255 chr18:23982470-23982970 0.29 292-[+1]-191 chr12:114390660-114391160 0.34 255-[-1]-228 chr7:151917814-151918314 0.43 215-[-1]-268 chr15:79757891-79758391 0.46 71-[+2]-224-[-1]-126-[-1]-34 chr11:60988820-60989320 0.56 14-[-1]-80-[-1]-138-[-1]-217 chr7:91033422-91033922 0.59 472-[+1]-11 chr12:112796794-112797294 0.59 228-[-1]-44-[-1]-194 chr15:81700367-81700867 0.71 116-[+1]-102-[+1]-248 chr1:169322898-169323398 0.88 201-[+2]-48-[+1]-223 chr8:83025150-83025650 0.92 15-[-2]-189-[-1]-268 chr3:104843905-104844405 0.94 122-[+1]-340-[-1]-4 chr5:138127197-138127697 0.96 234-[-1]-249 chr7:111007530-111008030 0.96 213-[-1]-270 chr6:81915769-81916269 1.1 197-[-2]-292 chr18:80416880-80417380 1.1 215-[-1]-14-[+1]-237 chr15:91082416-91082916 1.1 246-[+1]-107-[+1]-113 chr7:104332488-104332988 1.1 224-[+1]-132-[-2]-116 chr1:133343883-133344383 1.2 231-[-1]-252 chr5:45951565-45952065 1.2 268-[+1]-215 chr10:126642277-126642777 1.2 259-[+1]-224 chr10:59256089-59256589 1.3 301-[+1]-182 chr9:98389943-98390443 1.3 259-[+1]-31-[-2]-182 chr7:105490727-105491227 1.4 239-[+1]-244 chr7:103853792-103854292 1.5 280-[-1]-203 chr10:57252236-57252736 1.5 151-[-1]-332 chr9:21362671-21363171 1.7 101-[-1]-134-[-1]-55-[+1]-159 chr19:56465963-56466463 1.7 302-[-1]-39-[-1]-21-[-1]-87 chr13:57679178-57679678 1.9 97-[+2]-116-[+1]-259 chr1:33631214-33631714 1.9 365-[+1]-118 chr4:43977111-43977611 1.9 56-[-1]-151-[-1]-259 chr10:60612190-60612690 1.9 211-[-1]-210-[+1]-45 chr5:65202593-65203093 2 340-[-1]-13-[-1]-113 chr1:134264178-134264678 2 256-[+2]-182-[+1]-34 chr5:37127175-37127675 2.1 193-[-2]-41-[-1]-238 chr8:97323995-97324495 2.2 184-[+1]-201-[-1]-81 chr12:41693216-41693716 2.2 94-[+1]-79-[+2]-299 chr9:20561645-20562145 2.4 112-[+1]-371 chr9:57618594-57619094 2.5 313-[+1]-7-[+1]-146 chr1:75175760-75176260 2.5 229-[+2]-260 chr9:34860987-34861487 2.5 232-[+2]-18-[+1]-222 chr17:28960252-28960752 2.5 217-[-1]-84-[-1]-165 chr7:101244829-101245329 2.6 236-[+2]-253 chr2:103728071-103728571 2.7 365-[-1]-118 chr9:102674395-102674895 2.8 336-[-1]-42-[-2]-94 chr10:128184604-128185104 3.3 252-[-1]-113-[+2]-107 chr5:33616214-33616714 3.3 254-[+1]-229 chr13:112863645-112864145 3.6 224-[-1]-34-[+1]-208 chr8:3522196-3522696 3.6 6-[-1]-477 chr7:38970375-38970875 3.9 45-[-1]-117-[-1]-304 chr9:24715045-24715545 4.1 221-[+1]-145-[-1]-100 chr4:149892777-149893277 4.1 355-[-1]-128 chr19:5845899-5846399 4.4 42-[-1]-73-[-1]-196-[-1]-138 chr1:173447614-173448114 4.4 376-[+1]-107 chr11:69714224-69714724 4.5 226-[+1]-257 chr4:135733850-135734350 4.5 79-[-1]-94-[+1]-134-[+1]-142 chr7:110976195-110976695 4.6 325-[-1]-158 chr13:54345922-54346422 4.6 470-[-1]-13 chr7:19832207-19832707 4.9 236-[+1]-247 chr2:25148316-25148816 5 263-[-2]-100-[+2]-115 chr3:97461668-97462168 5.3 311-[+1]-73-[-1]-24-[-1]-41 chr3:107899566-107900066 5.7 234-[+2]-255 chr17:47735006-47735506 5.8 244-[-1]-58-[-1]-25-[+1]-74-[-1]-31 chr3:88305500-88306000 5.9 225-[-1]-258 chr1:183146440-183146940 6.1 216-[-2]-273 chr16:49839621-49840121 6.4 276-[+1]-207 chr8:19984030-19984530 6.4 125-[+1]-358 chr6:145703215-145703715 7.4 132-[+2]-357 chr15:58719281-58719781 7.4 253-[-1]-85-[-2]-134 chr6:135115628-135116128 7.5 238-[+1]-245 chr11:32678204-32678704 8.3 122-[+2]-367 chr14:61272713-61273213 9.6 346-[-1]-137 ******************************************************************************** ******************************************************************************** SECTION III: ANNOTATED SEQUENCES ******************************************************************************** - The positions and p-values of the non-overlapping motif occurrences are shown above the actual sequence for each of the high-scoring sequences from Section I. - A motif occurrence is defined as a position in the sequence whose match to the motif has POSITION p-value less than 0.0001 as defined in Section II. - For each sequence, the first line specifies the name of the sequence. - The second (and possibly more) lines give a description of the sequence. - Following the description line(s) is a line giving the length, combined p-value, and E-value of the sequence as defined in Section I. - The next line reproduces the motif diagram from Section II. - The entire sequence is printed on the following lines. - Motif occurrences are indicated directly above their positions in the sequence on lines showing o the motif number of the occurrence (a minus sign indicates that the occurrence is on the reverse complement strand), o the position p-value of the occurrence, o the best possible match to the motif (or its reverse complement), and o columns whose match to the motif has a positive score (indicated by a plus sign). ******************************************************************************** chr9:120025371-120025871 LENGTH = 500 COMBINED P-VALUE = 1.38e-05 E-VALUE = 0.0028 DIAGRAM: 169-[+2]-14-[-1]-289 [+2] [-1] 8.0e-05 1.3e-08 CAATCCCCATC AGGGAGCTGGGTGTGGC +++++++++ +++++++++++++++++ 151 CCTGAAGGATCTCAGAGGAGAAACCACAGATGCATATGTGGAGAAAGGAGCTGGGTGTGGTGGGCCGACCTGCTG chr1:137838164-137838664 LENGTH = 500 COMBINED P-VALUE = 2.93e-05 E-VALUE = 0.0059 DIAGRAM: 4-[-1]-198-[-1]-58-[+1]-189 [-1] 8.8e-05 AGGGAGCTGGGTGTGGC +++ + +++++ ++ 1 AGAGAAGCATGGGGGTGGGGGTGGGAGAACCTGCCTTGTTTTGGTTTTTGTGCATTTGACAAAACTCACCAGCCT [-1] 6.9e-0 AGGGAG ++ +++ 151 TATGATGGGGCCACCAGGCACATACAGGGACCTTTACAAAAGCCTGAGGAGAGAAGATAGCAGCTGCATGGAGAG [+1] 9 1.5e-0 CTGGGTGTGGC GCCACA +++++++++++ + +++ 226 ATGGGTGTGGCTCTCTCTCCAGCTGGGAGCCCTGGAAGGGACAAGATAGAAGTCCTGTCCAGAAGCCAAGTCACG 5 CCCAGCTCCCT +++++++ + + 301 CCCTTCTGCATATTCACATTTTCCTCAGAATCTTCACAAATCTCCTAACTGGTCTCATCTAGTCATATTCTTGTC chr6:121187425-121187925 LENGTH = 500 COMBINED P-VALUE = 4.09e-05 E-VALUE = 0.0082 DIAGRAM: 379-[+1]-81-[+2]-12 [+1] 1.3e-06 GCCACACCCAGCTCCCT +++++++++++ ++ + 376 CTAAGCCACACCCTGGCCTTAGAAACACCATGCCGCTGAGATGAATTGTCCCTAGGATGGCACCCAGGGAAATAA [+2] 2.4e-06 CAATCCCCATC +++++++++++ 451 TATCTTTAATAAGTACATTTAAGGTTTCAAACCACATTTAGCTGGCCAGT chr11:77795184-77795684 LENGTH = 500 COMBINED P-VALUE = 4.54e-05 E-VALUE = 0.0091 DIAGRAM: 24-[+2]-182-[-2]-15-[-1]-240 [+2] 1.9e-05 CAATCCCCATC +++++++++ + 1 ATGCGAGGTGAGGGGCTCAAACTACAAACCCCAGTGTGCAATACGGCAGCTCTCAAAAGTATCCTTTCCCGGCAG [-2] 4.5e-07 GATGGGGA ++++++++ 151 CCATCGCGAGTCTAACTACCAGAGTGCAAAGCGGTCCCGTTCACCCTTTGAACTCTGCGCGTTGCAAGATGGGGA [-1] 7.9e-06 TTG AGGGAGCTGGGTGTGGC +++ +++ +++++++ ++ ++ 226 TTGAAGTCAGCTGTAGGCAGGTAGCTGGGCGTTGTCAGGATTACGGACTGTTTGGGCTTTTGACTTCCTCTTTCG chr14:79702844-79703344 LENGTH = 500 COMBINED P-VALUE = 6.36e-05 E-VALUE = 0.013 DIAGRAM: 254-[+1]-229 [+1] 6.9e-09 GCCACACCCAGCTCCCT +++++++++++++++++ 226 TGTCTCTTTTCAGCACCACTTTGAAGTTAGCCACACCCTGCCTCCCTAGGGTGAAGAAGAACTAAGCAGTCAAGG chr11:117187372-117187872 LENGTH = 500 COMBINED P-VALUE = 1.07e-04 E-VALUE = 0.021 DIAGRAM: 203-[-2]-24-[-1]-64-[-1]-69-[-1]-78 [-2] 2.1e-05 GATGGGGATTG ++++++ +++ 151 CCAGGACTGAGGGGTGCAGGCAGGGCCTGAGCAGTAGGACCTAGTATCTCAGGCATGTGGGTTCTCCAGGAAGAA [-1] 4.2e-07 AGGGAGCTGGGTGTGGC +++++++ +++++++++ 226 CATGGCCTGTAGAGGGAGGAGGGGTGTGGCCTCAGAGAACCCACTGGAGAGATGGATCAAAGCTGGGCAGGGGTT [-1] 3.0e-05 AGGGAGCTGGGTGTGGC +++ +++++++ + ++ 301 GGAACCAGAAACACGGAAGAGGCAGAAGGGAGGGGAGATCACGCCCGGAAGCCAAAATGAGATGTGAAAGGGAAA [-1] 3.3e-05 AGGGAGCTGGGTGTGGC ++++++++++++ + 376 GAGATCCCAGGATGGTCCCGCAAGGGCTGCCTCAGGCTGGGTGTGACTGGAGATGAGCCAGTGGGGAACCTCCCA chr1:156887119-156887619 LENGTH = 500 COMBINED P-VALUE = 1.53e-04 E-VALUE = 0.031 DIAGRAM: 287-[+2]-6-[+1]-179 [+2] 7.6e-06 CAATCCCCATC +++ +++++++ 226 AGCACCTGACATGCTAGAGACGCCCAACTGACTATCAACGCAATGAACATCCTGTTCACACTCAACCCCCATTCA [+1] 1.7e-06 GCCACACCCAGCTCCCT ++++++++++ + ++ 301 GGTGACCACACCCAACAAGCTGGGCCAAGACGACTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCAC chr6:72223026-72223526 LENGTH = 500 COMBINED P-VALUE = 1.88e-04 E-VALUE = 0.038 DIAGRAM: 48-[+2]-291-[+1]-133 [+2] 2.4e-05 CAATCCCCATC ++++++++++ 1 ACAAAGTTAGAGACCCAAAGAAGAAAGGTTTGGTCTCTTCTTCCATCAGAATCCACACACAAGGGAAATGGTTAG [+1] 7.0e-07 GCCACACCCAGCTCCCT ++++++++++++++ 301 TTACGGGGCATGCCCAGTTCACTTACCAGACCTCACAGCCGACCCCACCCACCACACCCATCCCAGACAGCACTC chr13:3866266-3866766 LENGTH = 500 COMBINED P-VALUE = 1.89e-04 E-VALUE = 0.038 DIAGRAM: 237-[-1]-16-[+1]-213 [-1] [+1] 8.8e-05 4.6e-08 AGGGAGCTGGGTGTGGC GCCACACCCAGCTCCCT ++ + +++++ + + + +++++++++++++ + 226 CCTTTCCAGTGTGATTATCAGGGCGGGTTTGTACCTAGCCGTTCAGCCACACCCTTCTGGGTTGGTCCTGTTTGG chr12:27135944-27136444 LENGTH = 500 COMBINED P-VALUE = 2.06e-04 E-VALUE = 0.041 DIAGRAM: 282-[+1]-201 [+1] 1.4e-07 GCCACACCCAGCTCCCT +++ +++++++++ ++ 226 GAGGCTGAGAAAACCCAGATAAAGAGGAACTGGGCATAGGAACCACCATTCAGCCAGGCCCCACCCTGCTAGCTC chr1:169314208-169314708 LENGTH = 500 COMBINED P-VALUE = 2.51e-04 E-VALUE = 0.05 DIAGRAM: 196-[+2]-12-[+1]-264 [+2] [+1] 5.9e-06 3.8e-0 CAATCCCCATC GCCACA +++++++++++ ++++++ 151 GGCCTCTGGGTCAGGGTGCACCAAGAAGGAAAGGCAGCTCAGTTCAGAATCCACACCCAGGCAGCCTCTGCCACA 6 CCCAGCTCCCT +++++ + + 226 CCCTGGGTTGTTCCGAATGCAGAGGCAGCAGATAGCTTACAGGGCCAGGCCTGAGGAGCTGATAATTGGGAAAAG chr6:35303481-35303981 LENGTH = 500 COMBINED P-VALUE = 4.27e-04 E-VALUE = 0.085 DIAGRAM: 199-[+2]-219-[+1]-54 [+2] 2.4e-06 CAATCCCCATC +++++++++++ 151 CTACAGACTCACAGAGGACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAAACCACATTTAAAACTGAATGTAG [+1] 1.7e-05 GCCACACCCAGCTCCCT +++ +++++ +++++ 376 CCAGAATGTGCTGACTCTGTAACCATTCCTCACTTGGAACCAAGCTGGGGAAGCGCCCCACCCCCACCCCTCAAT chr17:24289205-24289705 LENGTH = 500 COMBINED P-VALUE = 4.94e-04 E-VALUE = 0.099 DIAGRAM: 242-[-1]-7-[+2]-65-[+2]-125-[-1]-5 [-1] [+2] 4.4e-05 4.4e-06 AGGGAGCTGGGTGTGGC CAATCCCCATC + +++++ +++++ +++++++++++ 226 CACTACAGTGACTCAGCTAACCTCAGGGAGTGGCTGTCCCCCAATCCACACCCATACCACAGGCACGTCTGATGC [+2] 5.7e-05 CAATCCCCATC +++++++++ 301 CGTACCAAAATCACCTAAGGCTGGGGCGGCAACTGTGCCCCAGAAACCCCAGGCTGAAGTAATTGGCACAACTTT [-1] 5.2e-05 AGGGAGCTGGGTGTGGC ++ ++ ++ ++++++++ 451 CAGAGTATGTTTGGAAAGTAAAAGTTCTGGAGATAATGGTGTGGTGAATG chr11:57590460-57590960 LENGTH = 500 COMBINED P-VALUE = 5.41e-04 E-VALUE = 0.11 DIAGRAM: 239-[+2]-104-[+1]-129 [+2] 3.5e-05 CAATCCCCATC +++++++++ 226 CCGTGCTAGTCTCTCAATCCACAGGAGACAGAATGTGAAAACACGGTGGATGGCGTCCCAGAAACAGCTGGGACC [+1] 1.5e-06 GCCACACCCAGCTCCCT ++++++++++ + + ++ 301 CTCCACACCCAAAGCCACTGTGGCCTCCATTCTGGACTGTAGTATCTGCCCAGGACCACACCCACCACGCCCCAT chr10:93585404-93585904 LENGTH = 500 COMBINED P-VALUE = 5.99e-04 E-VALUE = 0.12 DIAGRAM: 215-[-1]-58-[-2]-199 [-1] 1.4e-05 AGGGAGCTGG ++ +++++++ 151 CTTTTATCTTCCATCCTCTCAGTCCTAAGGTTCTCAGCCCTGCTCACTACAGATTGCAGCAAGCCAGAGAGATGG [-2] 4.4e-06 GTGTGGC GATGGGGATT + ++ + ++++++++++ 226 GCGTATCCAGGGTGACCGTGAGGATGGCGGGGGAGATAGTGTCAGGCGCATAAGTTCTGGCCTATGGTGGGGATT G + 301 GCTATATAAAGACACCCTTGCTTCCTTCCATGGCAGTGATAAGGTTGCACATTTTGTCTGTTTGTTTTGTTTTTG chr17:5112057-5112557 LENGTH = 500 COMBINED P-VALUE = 1.32e-03 E-VALUE = 0.26 DIAGRAM: 245-[-1]-171-[-2]-6-[-2]-39 [-1] 3.4e-06 AGGGAGCTGGGTGTGGC + + ++++++++++ 226 TGACCCGTGATAAGAGCAAAACATGTGAGGGTGTGGCTCAGGGTTCCTGTCTGTGCTTAGTAGGGCCTTGCCTGC [-2] 9.2e-05 GATGGGGATTG ++++++ ++++ 376 TGATAGAATAGGGACATGTGCTGGTTGAAGTGTCTCTCGGAAGGTTTCCAGGATCGAGAGTGTGTATTGGTGAGA [-2] 4.2e-05 GATGGGGATTG ++++++++ ++ 451 GATGTGGTCTCAGCAAGGGCCATTTATTTATGTTAGTGAAAGTGGAGGGC chr11:105013714-105014214 LENGTH = 500 COMBINED P-VALUE = 1.42e-03 E-VALUE = 0.28 DIAGRAM: 301-[-1]-104-[-1]-61 [-1] 4.2e-07 AGGGAGCTGGGTGTGGC + +++++++++++ + 301 GTGTCAGATGGGTGTGCCCCTTTCACCAGAGGCCCACACGGCCCCCCAGGGCACAGTGACACCACCCTTCCTGAA [-1] 4.4e-05 AGGGAGCTGGGTGTGGC ++ +++++++ + + 376 TGCCTATTCTACAACCATAAGGTTTCTAAATGTACGGCATGGAGCACTGGCAGCTGGGCGGGTAGGTTCTAGATG chr10:110604369-110604869 LENGTH = 500 COMBINED P-VALUE = 1.44e-03 E-VALUE = 0.29 DIAGRAM: 228-[-1]-255 [-1] 2.0e-07 AGGGAGCTGGGTGTGGC ++++ ++++++++++++ 226 TCTGAGACGCTGGGTGTGGCATTTGCTGGTGATCCTGCTCTTGGGAGATAGGGAAAGGAGGGTTACCTTGAGTTT chr18:23982470-23982970 LENGTH = 500 COMBINED P-VALUE = 1.47e-03 E-VALUE = 0.29 DIAGRAM: 292-[+1]-191 [+1] 2.5e-07 GCCACACC +++++ ++ 226 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAAGCCACCACGCC CAGCTCCCT +++++ ++ 301 CAGCTGACTAAGCATCTTAATCCTTGGACATAGATGTACTTTTTTAAAAAAAGAATATTTATGGTTGAAGTTATT chr12:114390660-114391160 LENGTH = 500 COMBINED P-VALUE = 1.72e-03 E-VALUE = 0.34 DIAGRAM: 255-[-1]-228 [-1] 3.6e-07 AGGGAGCTGGGTGTGGC +++++++++++++++ + 226 GCGTGACTAAGAGGTCCCCTTGCCCCTGCTGAGGAGAAGGGTGTGCCCAGGTTTAGTGCAGAGGTCAGAGGACTT chr7:151917814-151918314 LENGTH = 500 COMBINED P-VALUE = 2.13e-03 E-VALUE = 0.43 DIAGRAM: 215-[-1]-268 [-1] 1.1e-06 AGGGAGCTGG + ++++ 151 GGAGGCGGAATGGTGAACAATGCTGGGTGCTGGGCTGGGGAAAGATAGGAGACTATGGTGAGCCCTGCCTTCTGG GTGTGGC +++++++ 226 GTGTGGCTCCCTGCAGCAGCCAGATAGTCACAGATAACTTTCTTTTCCTCCAAAGCCAGCGACCCCAGTTCTGGG chr15:79757891-79758391 LENGTH = 500 COMBINED P-VALUE = 2.32e-03 E-VALUE = 0.46 DIAGRAM: 71-[+2]-224-[-1]-126-[-1]-34 [+2] 4.4e CAAT ++++ 1 NNNNNNNNNNNNNNNNNTTCCCGGGCTAGGATCGCTGCCTAGATTTCGGGTCTTTAAGCCCGGCAAGCTGTGAAA -06 CCCCATC +++++++ 76 CCACATTAGAGAGGGGCCAAGATCCTAGAATCAAGTCCCTTTGGCAGAAGAGAGGAAGCTGTGGGACAGAAGGAG [-1] 9.6e-05 AGGGAGCTGGGTGTGGC + + +++++ + ++ 301 CTGGAAACCTATCTGGGCGGAGCACGACGGCCTGCTGGAGATAAACACGACCACGTGACCGTAGCCCCGCCCCCG [ 6 A + 376 CACTGCCACAGCCCGGTAAACAAGCTCTACTACTGCACCCGACCCAGCTACGCAGTACCAGCGAGCTGGAGTCAG -1] .2e-05 GGGAGCTGGGTGTGGC + ++ +++++ +++ 451 GCGATTGGGGTGGGGTCGCGACACCCCAGCAAGACAGGTCGCTGGGTCCC chr11:60988820-60989320 LENGTH = 500 COMBINED P-VALUE = 2.82e-03 E-VALUE = 0.56 DIAGRAM: 14-[-1]-80-[-1]-138-[-1]-217 [-1] 4.0e-05 AGGGAGCTGGGTGTGGC ++ ++++ +++ +++ + 1 TCGAGTCTCTCCTTGGAAGGCGGGGCGTGCTGAGGATTGGGTAAAACTGAGTGTCAGTCAGGCCACTGAACCGGT [-1] 2.3e-05 AGGGAGCTGGGTGTGGC + +++ +++++ +++ 76 TTGCACCGGCCTGAGCTCTGCCGCAAAGAGGCGGGGCGACGGAGGGGTGGGGCAGGGTAGGGCCTGCGTCTGCGA [-1] 3.0e-06 AGGGAGCTGGGTGTGGC ++++ ++++ +++++ 226 TGCCATCTTGGCGACTGTGTTGGGTACCGCAATGCCACAGCTGGAGATTGGGCGTGGCAAGAATACAGATCTTCC chr7:91033422-91033922 LENGTH = 500 COMBINED P-VALUE = 2.94e-03 E-VALUE = 0.59 DIAGRAM: 472-[+1]-11 [+1] 4.2e-07 GCCACACCCAGCTCCCT ++++++++++ +++++ 451 AGAAGGTCCCCTAAACCCACTGGCCACACCCACTCCCTTTCTTTGTGCAG chr12:112796794-112797294 LENGTH = 500 COMBINED P-VALUE = 2.96e-03 E-VALUE = 0.59 DIAGRAM: 228-[-1]-44-[-1]-194 [-1] [-1] 7.0e-06 7.0e-07 AGGGAGCTGGGTGTGGC AGGGAGCTGGG +++++ +++++++++ + +++ + ++++ 226 CTAAAGGGCCTGGGTGTGACTGGGTACATCTGGCAGGTTCCCATTATCTCCTATGGACACTGTGAAGTTGTAGGG TGTGGC ++++++ 301 TGTGGCCTGGTTGACAGTGGTGGCTCTCAGTTAGGGGCTGAGTGAGGGAAGAATTACGACTGGAAATGAGCAGTT chr15:81700367-81700867 LENGTH = 500 COMBINED P-VALUE = 3.56e-03 E-VALUE = 0.71 DIAGRAM: 116-[+1]-102-[+1]-248 [+1] 7.4e-05 GCCACACCCAGCTCCCT +++++++++ + + 76 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACACACCCATTCGCAGGAGACAGCAAGGTACAT [+1] 9.6e-07 GCCACACCCAGCTCCCT +++++++++++ ++ + 226 TCTTTATTAGACCACACCCAGTTTGGCTCACAGGCTTGAAGAAATTACCTAGATAACTAGCTGAACACTGCAATC chr1:169322898-169323398 LENGTH = 500 COMBINED P-VALUE = 4.42e-03 E-VALUE = 0.88 DIAGRAM: 201-[+2]-48-[+1]-223 [+2] 3.3e-05 CAATCCCCATC +++++++++ + 151 TTGTACCCTAGGCTACTTGCAGACTGGTGCCTCCCAAGCAAAGAATTAACAGAAACCACAACCTCGGGAGTGACT [+1] 1.7e-05 GCCACACCCAGCTCCCT +++ +++++++ ++ 226 CAGTGTCTCTTACTCCCTTCCACCACCCTGCAGGTGCCCCACCCTGTGGTTCTGGGTCTCCCTGTAGCGACACAA chr8:83025150-83025650 LENGTH = 500 COMBINED P-VALUE = 4.61e-03 E-VALUE = 0.92 DIAGRAM: 15-[-2]-189-[-1]-268 [-2] 2.1e-05 GATGGGGATTG ++++++++ ++ 1 TAAATGTGACCATAAAATGGGGAGTGGGGTGAAAAATAAAGGGAGCCAGGAGTGAGCCCGAAGGCCATAAAGAGT [-1] 2.7e-05 AGGGAGCTGG +++ + +++ 151 CCATGCCATTGATCTTAAAAGGAAGCCAGTCCCCCACAGTGTTTCTCCACAGATTACTTAGGGGTAGGCAAGAGG GTGTGGC + + + + 226 GCGGGCCCAGTGGCAGACAGATCCCACTGCCTGCAAAATGATAGCCTATAAGCCAGTTGGGTGATGAGATAAGGG chr3:104843905-104844405 LENGTH = 500 COMBINED P-VALUE = 4.71e-03 E-VALUE = 0.94 DIAGRAM: 122-[+1]-340-[-1]-4 [+1] 2.6e-06 GCCACACCCAGCTCCCT +++++++++ ++ ++++ 76 TGACAACAATCAGAAGTTCTGGGTATCAAGCCGGGATGCACACGCAGGCCACACCCCTCGCCTTATGCACACACC [-1] 4.0e-05 AGGGAGCTGGGTGTGGC ++ + +++++++++ 451 NNNNNNNNNNNGCAGGTAGTGTTTGGGTCTAGTATCTGGGTGTGAGTATC chr5:138127197-138127697 LENGTH = 500 COMBINED P-VALUE = 4.79e-03 E-VALUE = 0.96 DIAGRAM: 234-[-1]-249 [-1] 9.8e-06 AGGGAGCTGGGTGTGGC + +++++++++++ 226 GTCTGTCTTTTGCTACAGGGTGTGGTCTGCAAGAGCAACCAGAGGGTGCGCTTCCTCCTCCTGTCTCTACTCCAC chr7:111007530-111008030 LENGTH = 500 COMBINED P-VALUE = 4.80e-03 E-VALUE = 0.96 DIAGRAM: 213-[-1]-270 [-1] 8.2e-07 AGGGAGCTGGGT + ++++++++ 151 TTTTATTTAAATAAGTAGAAGTAGAAAGAACTGGTGTTTTTCTTCTTCTGGGACTTGGGGTAGTGTCAGCTGGGT GTGGC + +++ 226 GGGGTCACAGACTGTGGTGACAGATAAGAGCCAGAGCTGCACAGAGCTGAGTCAAGGTTGAGGCCTCCGTGAGAT chr6:81915769-81916269 LENGTH = 500 COMBINED P-VALUE = 5.44e-03 E-VALUE = 1.1 DIAGRAM: 197-[-2]-292 [-2] 2.1e-05 GATGGGGATTG ++++++++ ++ 151 CATGTCTACACCCTCAATGAAGGACTACAACTCCCAGAAGTCAGTGCGATGGGGTGTGGCCGGACGGTGGCTCCT chr18:80416880-80417380 LENGTH = 500 COMBINED P-VALUE = 5.62e-03 E-VALUE = 1.1 DIAGRAM: 215-[-1]-14-[+1]-237 [-1] 8.1e-05 AGGGAGCTGG +++++ +++ 151 TAAACAGGAGCTACCTGCCTCTGGGTAAGTCCTGATGAGCCAATGTTCCCAGTCCAGAAGCCTCCTAGAGGTTGG [+1] 1.1e-06 GTGTGGC GCCACACCCAGCTCCCT + + + + + ++++++++ +++ ++ 226 GAGGGCCTCTCACCCTTGGGAGACACACCCACCTTATCTCCTCTGAGTGCTCTGGCCTGNNNNNNNNNNNNNNNN chr15:91082416-91082916 LENGTH = 500 COMBINED P-VALUE = 5.65e-03 E-VALUE = 1.1 DIAGRAM: 246-[+1]-107-[+1]-113 [+1] 1.5e-06 GCCACACCCAGCTCCCT ++++++++++ ++ + 226 AGCCTTTCAGAGATAAAAGGCACCACACCCTCCCAGCAGAGACATCTGTAGCCATAGTCTCTTATCAGGCTTTAT [+1] 6.2e- GCCAC + ++ 301 TTATAAGAACCCGGAGTAGAACAACAAAATAAACCCAGTTGTTTAACCTCACTAACTTCCTAGAAATTAAGAAAC 05 ACCCAGCTCCCT ++++++ ++ + 376 ACCCTGGTTTTAAAAAACGATAAAGGAAACAAAAATCATTAATTACATAGAAAAGTAGTAAATTTACACCAATTG chr7:104332488-104332988 LENGTH = 500 COMBINED P-VALUE = 5.71e-03 E-VALUE = 1.1 DIAGRAM: 224-[+1]-132-[-2]-116 [ 7 G + 151 CAACATGGTCTTTCTATCATTCATCTTATCATTCTGCTGTCTGTCTGAAGCAAGTTGTCTTTGGCTTATCTGCTG +1] .9e-06 CCACACCCAGCTCCCT ++++ +++ ++++ ++ 226 CCACTCCCCTCCTGCTGCTGTGTTAGTTCCCACTCTTGTGACCATAAGCCTCATAAGTGCTCTTTTAACCACCAT [- 9. GA ++ 301 ACCTTTCAGGAACTACTTCCTTCCTAAGACTTCATGGCTGTCATACAAGTTCACACATGCCATTTGATAAGGAAA 2] 8e-05 TGGGGATTG +++++ ++ 376 TGGGGGCTCTGCAGATGGATCAAAGATGGCTTAATAATTTTTATCAGCATACAAATATAGTCTTACTTTCAGAAA chr1:133343883-133344383 LENGTH = 500 COMBINED P-VALUE = 5.81e-03 E-VALUE = 1.2 DIAGRAM: 231-[-1]-252 [-1] 1.5e-06 AGGGAGCTGGGTGTGGC ++ + ++++++++++ 226 ACTGGGTAGTTGTAGGGTGTGGCCTGATTGATCATGGCAGCATACTTGGTGTTGTGGGCTAACCATGGGGATAAT chr5:45951565-45952065 LENGTH = 500 COMBINED P-VALUE = 5.87e-03 E-VALUE = 1.2 DIAGRAM: 268-[+1]-215 [+1] 2.6e-06 GCCACACCCAGCTCCCT +++++++++++ ++ 226 TTTATCTGGACATTTACTAACCTTGGTGGGGACACGCCCCAGAGCCACACCCAGGTCTGGCAATCATCTGCATGC chr10:126642277-126642777 LENGTH = 500 COMBINED P-VALUE = 6.03e-03 E-VALUE = 1.2 DIAGRAM: 259-[+1]-224 [+1] 3.0e-06 GCCACACCCAGCTCCCT + +++++++++ ++++ 226 NGCGGTTTTAGACGATGCGTGCCCAGTGGGAAGAGACACACCCAGTTTCTGTTAAGTCAAACAGAAGCAAGCAGT chr10:59256089-59256589 LENGTH = 500 COMBINED P-VALUE = 6.38e-03 E-VALUE = 1.3 DIAGRAM: 301-[+1]-182 [+1] 1.3e-06 GCCACACCCAGCTCCCT + +++++++++ ++ + 301 GGACACACCCATATCACAGGTGGAGACACTGATACTGTCGACAGCCACAGCTGCTGTGTGGTAGTGTCTGCTCGG chr9:98389943-98390443 LENGTH = 500 COMBINED P-VALUE = 6.39e-03 E-VALUE = 1.3 DIAGRAM: 259-[+1]-31-[-2]-182 [+1] 4.0e-05 GCCACACCCAGCTCCCT +++ +++++ ++ + 226 TGCTCACCACAATTAATAGCCCTTCTTATCTTCAGCCCCACCCCACCAGGCCAGCTTGCCTTATATTCTTGCATG [-2] 2.1e-05 GATGGGGATTG ++++++++++ 301 CAAGACCTGTGGGGTTTGGGGGGACTGTTTTAAAGTGCTTAAATCTGAATGTGGAAGGCAAGTGATGAATCCCCA chr7:105490727-105491227 LENGTH = 500 COMBINED P-VALUE = 6.77e-03 E-VALUE = 1.4 DIAGRAM: 239-[+1]-244 [+1] 1.5e-06 GCCACACCCAGCTCCCT ++++++++++ + + ++ 226 GTTCTAAGACCTGAACCACACCCACCACACCCACCCATGTGAAAGTTTAAAGATTATGTAATCCTAAAGCTAAAC chr7:103853792-103854292 LENGTH = 500 COMBINED P-VALUE = 7.31e-03 E-VALUE = 1.5 DIAGRAM: 280-[-1]-203 [-1] 3.8e-06 AGGGAGCTGGGTGTGGC ++ ++ +++++ +++++ 226 AAAGTGGTTACAAAGAACTGCTCAGGAAAATCTGATGGCTTCAACTTAACTAAATGACAGTATGGGCGTGGCAAG chr10:57252236-57252736 LENGTH = 500 COMBINED P-VALUE = 7.68e-03 E-VALUE = 1.5 DIAGRAM: 151-[-1]-332 [-1] 1.5e-06 AGGGAGCTGGGTGTGGC +++++++++++ +++++ 151 CGAGAGGAAGGGCGTGGTCTTCAGCGATGCTAGATTTGTGGCTTCATGGAGTGGGCCTACTTTGCCAAGTAAAGA chr9:21362671-21363171 LENGTH = 500 COMBINED P-VALUE = 8.65e-03 E-VALUE = 1.7 DIAGRAM: 101-[-1]-134-[-1]-55-[+1]-159 [-1] 5.7e-05 AGGGAGCTGGGTGTGGC + + ++++++++ + 76 CAGCTCTTCCATACCCACTGGGAAGAGTTCTGTTGGGTGTGCTGTTGGCTCTGGGAGAAGCGTGCGTGGAGGAGC [-1] 1.5e-06 AGGGAGCTGGGTGTGGC + ++ ++++++++ + 226 TCTATGTACAGGGTAGCAATTCCACCAACTCAGGAGGGTGTGTCAGACCTATCTTCCCTGTGCACTGTGACCTTC [+1] 8.1e-05 GCCACACCCAGCTCCCT + ++++++ ++ ++++ 301 CTTGGGTCAGTCACTCAGAACACAGGCACACCTTTGTCCCATTTGTCTTGTCTACACTTCCTGTCATGTACATTC chr19:56465963-56466463 LENGTH = 500 COMBINED P-VALUE = 8.67e-03 E-VALUE = 1.7 DIAGRAM: 302-[-1]-39-[-1]-21-[-1]-87 [-1] [-1] 2.3e-06 2.5e-05 AGGGAGCTGGGTGTGGC AGGGAGCTGGGTGTGGC + +++++++++++++ ++ ++ +++++ +++ 301 AGATAAGGCTGGGTGTGGGGAAGTCAGCCAGAGCGGAGGAAGCTGCATAGCAAGAAGCAGAGACTGGGGTGGGGC [-1] 3.3e-05 AGGGAGCTGGGTGTGGC ++ ++ +++++ +++ 376 TAGGGCAGTGTCTCACTAAGCAGAGGTTGGGGTGGGGCCAGAGGCTGCCCTCTCCTTGCTCAGAGGGACTCAAAG chr13:57679178-57679678 LENGTH = 500 COMBINED P-VALUE = 9.33e-03 E-VALUE = 1.9 DIAGRAM: 97-[+2]-116-[+1]-259 [+2] 8.0e-05 CAATCCCCATC ++ +++++++ 76 TCACTTAACAACCGTTAATATTGACACCACATGCCAATGTTGGTCACTGTATTGTCTGAGTCAGTTTCCTTGCCT [ 1 G + 151 GCTGCCAACTACTATTGACTACTGTTGTCGCCTTCTCCAGCTTCTATCTTTCAGCTCCAGCTGCATCTGCAAGAG +1] .7e-05 CCACACCCAGCTCCCT +++ ++++++++ 226 TCACGCCCTTCTTAGAACTGCAGCTGTGTGTAGTGGGACTGTTCACTTTCTCAGTAAGAGTGAGGCACCTGTGAC chr1:33631214-33631714 LENGTH = 500 COMBINED P-VALUE = 9.59e-03 E-VALUE = 1.9 DIAGRAM: 365-[+1]-118 [+1] 1.3e-06 GCCACACCCA +++++ ++++ 301 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTGCTTTGCTGCTGGGCCACGCCCT GCTCCCT ++ +++ 376 GCGACCCACGGGTTGAAAGTCACTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN chr4:43977111-43977611 LENGTH = 500 COMBINED P-VALUE = 9.69e-03 E-VALUE = 1.9 DIAGRAM: 56-[-1]-151-[-1]-259 [-1] 3.6e-05 AGGGAGCTGGGTGTGGC +++ ++++++++ ++ + 1 GAGATCTCCAAGGCTCAGTGGGAAACAAGCAGGAGAAAGTATAAGCCCAGCCTCGGGGGCAGATGGGTCTGCCTG [ 3 A 151 TCTGCCTGCCTGTGGGTAGATTTTACTTTGACTTTATCTGTGTTCCTGGGTTTTTCTATAGAAGCAGGGTGTTCC -1] .4e-06 GGGAGCTGGGTGTGGC +++++++++++++ 226 CCTGGCTGGGTGTGGTCGCCAGTGATAACTTGCCTCCTAAGGCTCTTGCCCTGCTCAGACTGAGAGGGGACTCCT chr10:60612190-60612690 LENGTH = 500 COMBINED P-VALUE = 9.71e-03 E-VALUE = 1.9 DIAGRAM: 211-[-1]-210-[+1]-45 [-1] 6.2e-06 AGGGAGCTGGGTGT ++ +++++++ 151 GCAGGTGACAGCACAGTGACAGCAGTGACAGCCAACTTTGCCCCCTTGTGAATGCTGATACTCAAATGAGGGTGT GGC +++ 226 GGTTAGCAATGGCATTCTTATCTCCACCTAGTGTGTCCGAGATGGGACATTTTACCTCCTCTGCATCCCGTGACA [+1] 9.6e-05 GCCACACCCAGC +++ ++++++ 376 ACAACCAAAAGCCCCAGGTACCTCTCTCCTCCATCCAGATCCCCTGAAATAACCCCTGGTTGACACACGCCCTTC TCCCT + + 451 CAATGCCTGCTCTTAAGAGTTACATAAGTTCCCTCTTTTAGGACTTCTTC chr5:65202593-65203093 LENGTH = 500 COMBINED P-VALUE = 9.94e-03 E-VALUE = 2 DIAGRAM: 340-[-1]-13-[-1]-113 [-1] [-1] 4.3e-06 4.0e- AGGGAGCTGGGTGTGGC AGGGA ++++++++ +++ + + 301 TTCAGCTTGGAGCCAGTCGGGTCCCTCCCAGCCTTCCCACTCCCTGCAGGGTGGGGCCCCATGGGTGGAGGCCCA 05 GCTGGGTGTGGC ++++++++ ++ 376 GCAGGGTGGAGTGAGGTGGGTCTCCAGTGATAGGGAGGGCACCTAGTGAGCCAGGCAGATGAGAGGCCCCGTGGC chr1:134264178-134264678 LENGTH = 500 COMBINED P-VALUE = 9.94e-03 E-VALUE = 2 DIAGRAM: 256-[+2]-182-[+1]-34 [+2] 7.0e-05 CAATCCCCATC ++++ ++++++ 226 TCCACTGTCTCTGAGCAGTTTTCCCCAGGCAGAATACCCATTCAGAGACTCTGCACGCATCTGAGCCTCAAGAAG [ 2 G 376 AGATAAGGAGGGCCCAGTGCTATCTCTAGGAGCCAGTGCCAAGGTTTGCAGCCAAAATCACCGAGACCAGGAATC +1] .0e-05 CCACACCCAGCTCCCT ++ +++++++ ++++ 451 CCCCACCCAGGATCTTGGAAACTATGCAAACATGTGTCAGCTGATGACTT chr5:37127175-37127675 LENGTH = 500 COMBINED P-VALUE = 1.07e-02 E-VALUE = 2.1 DIAGRAM: 193-[-2]-41-[-1]-238 [-2] 6.3e-05 GATGGGGATTG ++ ++++++++ 151 CCTCCCGCAACCCTGAAAGTGATTGTTTTGGAAGCCAAATTCAAAGGTGGATTCTTCTCAGCAGAGACTCCGTTA [-1] 2.5e-05 AGGGAGCTGGGTGTGGC ++++ ++++ + +++ 226 TCTGTAGTAGCAGAAAGAAATGGAACGTGGGAGGGGCACAGTGAGGACAGCTTGGGAGCCCAGATAAGGGTGGAG chr8:97323995-97324495 LENGTH = 500 COMBINED P-VALUE = 1.08e-02 E-VALUE = 2.2 DIAGRAM: 184-[+1]-201-[-1]-81 [+1] 3.4e-06 GCCACACCCAGCTCCCT +++ ++++++ +++ + 151 NNNNNGGGTCGAGGAGATCACCTAAGAGGAAGGAGCCCCACCCACCCCTGCTCCTATGGGAAGAAGGCAAGGTGG [-1] 1.7e-05 AGGGAGCTGGGTGTGGC ++ ++++++++++++ 376 GCTGAGAGCTGGAAGGAGCCCAGGCGTGGCAGGAAGGGTGTGCAAGCAGCAGCAGGCAAAGCCAGGCAAAGCAGG chr12:41693216-41693716 LENGTH = 500 COMBINED P-VALUE = 1.10e-02 E-VALUE = 2.2 DIAGRAM: 94-[+1]-79-[+2]-299 [+1] 4.8e-05 GCCACACCCAGCTCCCT +++++ +++++ ++ 76 CATATTCTACATATATTTACACACACACTGCTATTTATTATGTAGAGTGATACTGTATGTAGGTATGGATCCCGT [+2] 3.3e-05 CAATCCCCATC ++++++ ++++ 151 CAATGCTTTCTGCTATAGAAATTCTGGAAATAAACATTCTGAAACCTCATCGCCACAGATGTGCGACTCAACCAT chr9:20561645-20562145 LENGTH = 500 COMBINED P-VALUE = 1.20e-02 E-VALUE = 2.4 DIAGRAM: 112-[+1]-371 [+1] 2.3e-06 GCCACACCCAGCTCCCT ++++++++++ +++++ 76 CTATCTAAACGTTAGTGAGGGGAGAGGGGAAAGCACCACCACACCCTAGCTCCTGGTGTGGCTCCTGCTTCCCAG chr9:57618594-57619094 LENGTH = 500 COMBINED P-VALUE = 1.23e-02 E-VALUE = 2.5 DIAGRAM: 313-[+1]-7-[+1]-146 [+1] [+1] 7.0e-06 8.8e-06 GCCACACCCAGCTCCCT GCCACACCCAGCTCCCT +++ +++++++++++ +++++++++ + + 301 TCCACCTTTCTCCACCCCACCCTTCCCCAAGCTATGAGCCACACCCCCTTGTGTACAAGCTATGACTCAAGACTC chr1:75175760-75176260 LENGTH = 500 COMBINED P-VALUE = 1.25e-02 E-VALUE = 2.5 DIAGRAM: 229-[+2]-260 [+2] 2.1e-05 CAATCCCCATC ++ ++++++++ 226 CAGACACACCCCATCCAATGCTGGGTAACCCCACCAGCTGGCTATCAGCTTCCAGCCACCGCCAGACACTCCATT chr9:34860987-34861487 LENGTH = 500 COMBINED P-VALUE = 1.25e-02 E-VALUE = 2.5 DIAGRAM: 232-[+2]-18-[+1]-222 [+2] [+1] 2.0e-05 9.6e-05 CAATCCCCATC GCCACACCCAGCTCCCT +++++++++ + + +++++ +++ + 226 GCCACAAGAAACCCCAGCACAAGAACTGTGCAAGGTGGCACACACTTGTNNNNNNNNNNNNNNNNNNNNNNNNNN chr17:28960252-28960752 LENGTH = 500 COMBINED P-VALUE = 1.25e-02 E-VALUE = 2.5 DIAGRAM: 217-[-1]-84-[-1]-165 [-1] 8.8e-06 AGGGAGCT + + ++ 151 GTGCTACTCTGCTCTGGGCTGCTGTAGTCCTAAGAGTCTGCGCTCTTCAACGCACTGGCTCTGTGAGGTAGCTCT GGGTGTGGC +++++++++ 226 GGGTGTGGCTGACCCTAGGCCCTTATCCTGTCTTAGCTTCTGCTGCCATTGCCAGCTGGGTTGGAGAGGGCTTGA [-1] 3.0e-05 AGGGAGCTGGGTGTGGC + ++ +++ +++++++ 301 GAGTGGTTATCAGAAGAGGTAAGACTGTGTGTGGCTCTTCAAGAGGCAGAGGACCTCCCTGATAATTGAGGTTTG chr7:101244829-101245329 LENGTH = 500 COMBINED P-VALUE = 1.28e-02 E-VALUE = 2.6 DIAGRAM: 236-[+2]-253 [+2] 5.2e-06 CAATCCCCATC +++++++++++ 226 AAATTGTTTGACAATCCCCACTGGCTCTTACGCAGCAGATTTTAACTTGTCATACAAAAATAAATCAATGTTTCT chr2:103728071-103728571 LENGTH = 500 COMBINED P-VALUE = 1.34e-02 E-VALUE = 2.7 DIAGRAM: 365-[-1]-118 [-1] 1.7e-05 AGGGAGCTGG + ++++++ 301 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAACTCTACCAGCTGG GTGTGGC + +++ + 376 GAGTGTTATCTTCCAGTAATTTGCCAAGAGGACAAACACACACAGCAAGAGAGACAGACGTCCGATGTGTGTTCT chr9:102674395-102674895 LENGTH = 500 COMBINED P-VALUE = 1.39e-02 E-VALUE = 2.8 DIAGRAM: 336-[-1]-42-[-2]-94 [-1] 4.0e-05 AGGGAGCTGGGTGTGGC + ++ ++ +++++++ 301 CAGGAATTAATTTTATTAACACTGAGATGATCCAAATGTGAATTGAGTGTGGCAGCCTGGGATTTATGGCATTTC [-2] 5.3e-05 GATGGGGATTG ++++++ +++ 376 TGTCTGATCTTTTCTTCTTCTGTGTGGGTTCTTGTGAAATGTGTGTATATCCTTCCATATTTTTCTCTAAATCTC chr10:128184604-128185104 LENGTH = 500 COMBINED P-VALUE = 1.64e-02 E-VALUE = 3.3 DIAGRAM: 252-[-1]-113-[+2]-107 [-1] 5.7e-05 AGGGAGCTGGGTGTGGC ++ ++++ +++ +++ 226 GTGGAACTGCTCGCGGTAGCCAAAGCTAATCCGAAGTGTGGGGCGCGGCTAATTAGAATACTGACTGGGTCCGCC [+2] 4.5e-05 CAATCCCCATC +++++++++ 376 GGCCGCTGAATCCCCAGGGCTGCCCGCCCCAGTTCAGTCATGGAAACCGCCAGCACCCCCGAGGCCACGGGGACA chr5:33616214-33616714 LENGTH = 500 COMBINED P-VALUE = 1.65e-02 E-VALUE = 3.3 DIAGRAM: 254-[+1]-229 [+1] 5.5e-06 GCCACACCCAGCTCCCT +++++++++++ + 226 ATGAAGGCAGGCCTGGAGGGCCTTACCCCGCCACACCCTGAAACAAACTGACAGGATCTGCAAAATGGCCTTGTG chr13:112863645-112864145 LENGTH = 500 COMBINED P-VALUE = 1.80e-02 E-VALUE = 3.6 DIAGRAM: 224-[-1]-34-[+1]-208 [ 7 A 151 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTGTGTGTGTACTTCTGCAGACTTCTGCAGAGAAGAGT -1] [+1] .4e-05 5.5e-06 GGGAGCTGGGTGTGGC GCCACACCCAGCTCCCT +++ ++++++ ++ ++++++++++ ++ + 226 CCAGGTAGGGTGGAGCCCAGATGTGAGCTCCTCTAGCTGCTCACACTCTGACCACACCCAAATCTGCATATGGAA chr8:3522196-3522696 LENGTH = 500 COMBINED P-VALUE = 1.80e-02 E-VALUE = 3.6 DIAGRAM: 6-[-1]-477 [-1] 2.3e-05 AGGGAGCTGGGTGTGGC +++ ++++ ++++ +++ 1 TAAGCTGGGTAGAAAGGTGGGGCCCTGATGCTGTTCTTGTCACTTGAACTCATCTCTTCCTCCTGAACGTATGTC chr7:38970375-38970875 LENGTH = 500 COMBINED P-VALUE = 1.97e-02 E-VALUE = 3.9 DIAGRAM: 45-[-1]-117-[-1]-304 [-1] 1.4e-05 AGGGAGCTGGGTGTGGC + + +++++ +++++ 1 GCCCCCTGACACTTGCTAAGGAGCCTGGCTTGTCTTCTGGCAAAGGCTTGTCTGGGCGTGGTAGAGATTGAGAAT [-1] 3.0e-05 AGGGAGCTGGGTGTGGC ++ ++++++++++ + + 151 GTAGATAATTCTTTGAGTAGGTAATCAGGGGTAAGATGGGTGAGTCCAGTACTCATTCCCAGCTCCCTCCCNNNN chr9:24715045-24715545 LENGTH = 500 COMBINED P-VALUE = 2.03e-02 E-VALUE = 4.1 DIAGRAM: 221-[+1]-145-[-1]-100 [+1] 1.1e GCCA + ++ 151 GGGGGTATGGCAACAGGAGGAGTGTGTGAGGATTTATTCCCATTTTCTGACCCGTGTATTTCTAAGGAGAAGGCA -05 CACCCAGCTCCCT + ++++++++ + 226 CGCCCTGCTTATGCAGACTGCACCCCACTATCTGTCTGTTACCCTCTTCATAAGGCCAGCACCGAGCAGGTGGAG [-1] 8.8e-05 AGGGAGCTGGGTGTGGC ++ + +++++ + +++ 376 GTGGAGGAGACACACAGGGAGGGGCCACTGTGTTGTTAGGCAACAGAACCCAAAGTCCTGAATAACATGAGACAG chr4:149892777-149893277 LENGTH = 500 COMBINED P-VALUE = 2.07e-02 E-VALUE = 4.1 DIAGRAM: 355-[-1]-128 [-1] 1.4e-05 AGGGAGCTGGGTGTGGC + +++++++++ 301 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGGGGTGTGGCGAT chr19:5845899-5846399 LENGTH = 500 COMBINED P-VALUE = 2.20e-02 E-VALUE = 4.4 DIAGRAM: 42-[-1]-73-[-1]-196-[-1]-138 [-1] 8.8e-05 AGGGAGCTGGGTGTGGC ++ ++ + +++++ ++ 1 AATTCCACTCGGTGGCGGAGGGATCTCTGCGGTGGCGCGTCAGGCGGTAGGGGTGGGGGGGTTGGGGCGGGACCG [-1] 1.1e-05 AGGGAGCTGGGTGTGGC ++ +++++++++ ++ 76 GGCGCGTGACTTCTCGGGCGTTGCCGCCGCCTGCTCGCAGGGTGACGTCAGTGCGGGCAGCAGCAGGGTGGGGGT [-1] 3.0e-05 AGGGAGCTGGGTGTGGC + ++++++++++ 301 GGTTGAAGAGCGCCCAGTACAGTTAAGTGATTTTAGAAAACATTTTTGCTTTTGGGTGTGGTATAGTGAGAAAAA chr1:173447614-173448114 LENGTH = 500 COMBINED P-VALUE = 2.20e-02 E-VALUE = 4.4 DIAGRAM: 376-[+1]-107 [+1] 5.5e-06 GCCACACCCAGCTCCCT +++++ ++++ ++ + 376 AGCCACTCCCACCCAGCACATAATTCTGTGACACACAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCA chr11:69714224-69714724 LENGTH = 500 COMBINED P-VALUE = 2.23e-02 E-VALUE = 4.5 DIAGRAM: 226-[+1]-257 [+1] 1.4e-05 GCCACACCCAGCTCCCT ++++++++++++ + 226 CCGCACACCCTTCCCTTATTGTTACACCCCAAGACTTTCTTTGTCTCTGTAATTTGTTCCCGCCCTTCTCCATCA chr4:135733850-135734350 LENGTH = 500 COMBINED P-VALUE = 2.26e-02 E-VALUE = 4.5 DIAGRAM: 79-[-1]-94-[+1]-134-[+1]-142 [-1] 7.4e-05 AGGGAGCTGGGTGTGGC + ++++++++ ++++ 76 CCAAACCGGGATGGGGGTGGGCAGGAGGGAGAGTGTTTGCACTGTTTCCCAATGCGGGCACCTCCCTGGGGTGTG [+1] 1.7e-05 GCCACACCCAGCTCCCT +++ +++++++ + 151 GCACTGAGCCAGGAAGTCCCCTGGGCCTGGGCGGATGCTGGCCCCACCCTGATAAGGGCCAGCTGTGGAGCTGTG [+1] 6.2e-05 GCCACACCCAGCTCCCT +++++++ + ++ + 301 CAGTGGGCGCTGACACTTCCTCACCAAGTTCAGCCGGCCACGCCACACACCGCACTGAGGGCTGGTGGCAAGCAC chr7:110976195-110976695 LENGTH = 500 COMBINED P-VALUE = 2.32e-02 E-VALUE = 4.6 DIAGRAM: 325-[-1]-158 [-1] 4.9e-06 AGGGAGCTGGGTGTGGC + +++++++++++ 301 CTCTATCCTGTGTGAGCAGATTGGCCCTTACCAGGGTGTGGCTCTACGGAATCAGGCTTCGGTGATGACAAGCAT chr13:54345922-54346422 LENGTH = 500 COMBINED P-VALUE = 2.32e-02 E-VALUE = 4.6 DIAGRAM: 470-[-1]-13 [-1] 4.9e-06 AGGGAGCTGGGTGTGGC + ++ +++++++++ + 451 CCAAGGAGCTAAGTTATGGTACAAGTCAGGGTGTGCCCCCTGGGAGGCTC chr7:19832207-19832707 LENGTH = 500 COMBINED P-VALUE = 2.43e-02 E-VALUE = 4.9 DIAGRAM: 236-[+1]-247 [+1] 7.9e-06 GCCACACCCAGCTCCCT ++++++++++ + ++ 226 AAAAGCCCCAGGCCACACCCAAGATGTCTGACTATAGGTAACAGGTTCATTCTCCCTGGCCCTTGTCCCTAGAGG chr2:25148316-25148816 LENGTH = 500 COMBINED P-VALUE = 2.49e-02 E-VALUE = 5 DIAGRAM: 263-[-2]-100-[+2]-115 [-2] 1.6e-05 GATGGGGATTG +++++++ +++ 226 AGCTCCCTTGGCCCTGCTCTTCCACCCCTGCGCCCCCTAGTGGGGGTTCTGATTCAGACCTTGTAACATAGACCT [ 6 C + 301 TGCCCACTTTCCCTGGTCTGGGTGACCCTGAAGATAGTGTTTGTACCACCAGCTCCTGGAGCCTCAAGTTGGTGC +2] .3e-05 AATCCCCATC ++++++++ 376 AAACCACAGATTCTTACTCTTCATCCCCTTTTTCTGAACCAAGGCCTTTGGAGAGCTGAGCAGCCAGGCCTTGTG chr3:97461668-97462168 LENGTH = 500 COMBINED P-VALUE = 2.67e-02 E-VALUE = 5.3 DIAGRAM: 311-[+1]-73-[-1]-24-[-1]-41 [+1] 4.0e-05 GCCACACCCAGCTCCCT +++ ++++++ ++++ 301 TCCCGACCCGGACCCCACCCTCGGCCCCGCCCCAAGCCGGAGCTGCGCACGCACCCACCACAGAGGCGGTGCTGG [-1] [-1] 9.6e-05 2.5e-05 AGGGAGCTGGGTGTGGC AGGGAGCT + ++ +++ + +++ ++ + + 376 TGGCTAGAGAGGCAGGCGACCCAGGCTGAGGAGGGGGCGGGGCTGGAGCGCAGGGGGCGGAACAAGAGGCTCGGT GGGTGTGGC +++ + +++ 451 GGGCGGGGCCAGAGGCAGAGGCGGTACCTCGTCGCGGGCCTTGTAGCCAT chr3:107899566-107900066 LENGTH = 500 COMBINED P-VALUE = 2.84e-02 E-VALUE = 5.7 DIAGRAM: 234-[+2]-255 [+2] 8.4e-06 CAATCCCCATC ++++++++++ 226 GCGTGTTTACAATCCCCATGTTTACGCCCTGTCACCTAATCTTGAAATAATGTTATTTCGTTTCTGGAATCTCCN chr17:47735006-47735506 LENGTH = 500 COMBINED P-VALUE = 2.88e-02 E-VALUE = 5.8 DIAGRAM: 244-[-1]-58-[-1]-25-[+1]-74-[-1]-31 [-1] 7.9e-06 AGGGAGCTGGGTGTGGC ++ ++ ++++++ +++ 226 ATCTCTGGCTCCAGTCTGGAGAGGAGTGGGTGGGGTGAAGGACACTTGGCATGTAGATACCCTTCTCTTGACATC [-1] [+1] 8.8e-05 8.1e-05 AGGGAGCTGGGTGTGGC GCCACACCCAGCTC +++ + +++++ ++ +++++++++ ++ 301 TCTTGACAAGTGCTGTGTCTCGGACAGGGGTGGGGGACTTGGTGTCAGATGGAGGGTTGCTCTCACACCCTTGCC CCT + 376 ACATCCTCTTGCCAGTTTCTGAGAACTAAAGACCTGATTCCTGGGCTGGGCTGTGGCCTAACCTCCCCAGACTTC [-1] 6.2e-05 AGGGAGCTGGGTGTGGC ++ + +++++ +++++ 451 CCAGTGCACAGGGGGTGGCCTTTCCACCTGCTTGCTGTCAGTGCTGTGAG chr3:88305500-88306000 LENGTH = 500 COMBINED P-VALUE = 2.97e-02 E-VALUE = 5.9 DIAGRAM: 225-[-1]-258 [-1] 3.6e-05 AGGGAGCTGGGTGTGGC + +++++ +++++ 226 NNTGCAATGGGAGTGGCCTGAGGCTCCCTAACGGCTGGATTTCAAAAATGTCATTGTATTCCAGAGGTTTAGTAA chr1:183146440-183146940 LENGTH = 500 COMBINED P-VALUE = 3.04e-02 E-VALUE = 6.1 DIAGRAM: 216-[-2]-273 [-2] 3.8e-05 GATGGGGAT +++++++ 151 NNNNNNNNNNCCCCAGCCGCCAAGCAGTTTTACCCACTGCCCTGTGCATATCTCTCCAGCACAGGTGATGGGGGG TG ++ 226 TGGGGGGTAAGAGGGAGGTGCCTTGAAGCAGCAGGAACATCTGGGAGGACAGGCCTTCTGACCTCACAAGCCAGC chr16:49839621-49840121 LENGTH = 500 COMBINED P-VALUE = 3.18e-02 E-VALUE = 6.4 DIAGRAM: 276-[+1]-207 [+1] 5.5e-06 GCCACACCCAGCTCCCT + ++++++++++++ + 226 TATGAGCCGGTGCCAGCTGAGTCTAGATGGTAGAGTTTTACACTTGAATGAAACACACCCTGCCCTCGGTTCTGG chr8:19984030-19984530 LENGTH = 500 COMBINED P-VALUE = 3.21e-02 E-VALUE = 6.4 DIAGRAM: 125-[+1]-358 [+1] 3.3e-05 GCCACACCCAGCTCCCT ++ +++++++ +++++ 76 TTTTATTGAAAAAAAAAAAATCACCTCTTCCTTTGTACACACCCAGGCTCACAACACCCACTTTCTCCTCCTGAA chr6:145703215-145703715 LENGTH = 500 COMBINED P-VALUE = 3.68e-02 E-VALUE = 7.4 DIAGRAM: 132-[+2]-357 [+2] 2.1e-05 CAATCCCCATC ++++++++++ 76 NGCTTCAACACATTCTTCCTAGTTGCCGTCCTCCCCGCATTTGTTCGCTTATCTAAACAAACCACACACCTTCCA chr15:58719281-58719781 LENGTH = 500 COMBINED P-VALUE = 3.71e-02 E-VALUE = 7.4 DIAGRAM: 253-[-1]-85-[-2]-134 [-1] 9.6e-05 AGGGAGCTGGGTGTGGC + ++ +++++++ + 226 GGGAAAGTGAGCAAACAAAGCCCAAACCACAAAACTGGGTGGAGGTGCCATCTTCCTGCTCCAAACACCTTCCCC [-2] 7.3e-05 GATGGGGATTG +++++++ ++ 301 CAAAAGGGTTCTGTTAAAGTCTGATAATTTTATTTACAGACCTCCTCCCTGTGCGGGTGTGGGGTGGAGTGGGAA chr6:135115628-135116128 LENGTH = 500 COMBINED P-VALUE = 3.73e-02 E-VALUE = 7.5 DIAGRAM: 238-[+1]-245 [+1] 1.4e-05 GCCACACCCAGCTCCCT + + ++++++ ++ + 226 CAAGCATTCTCAAGACCCACCCAACTAAGCACAGAGGGCTCCCCATCCCTCCCTCCCTGAGCAATGAAGAGCCTG chr11:32678204-32678704 LENGTH = 500 COMBINED P-VALUE = 4.14e-02 E-VALUE = 8.3 DIAGRAM: 122-[+2]-367 [+2] 8.9e-06 CAATCCCCATC +++++++++++ 76 GTTCCCAATGCATCAGAAAATACAAATGAACACAATCTTGCAGATTGGAAACCACACTTTAAATTGGTAAGCGAG chr14:61272713-61273213 LENGTH = 500 COMBINED P-VALUE = 4.82e-02 E-VALUE = 9.6 DIAGRAM: 346-[-1]-137 [-1] 1.5e-05 AGGGAGCTGGGTGTGGC ++ + ++++++++ + 301 TGACAGGCCTTCAACACAGCACACGGCCTGGCAGGGCTGATAAGGAGGAGCAGTGGGTGTGTCCTTCATCTTTCC ******************************************************************************** CPU: Timothys-Mac-Mini.local Time 0.019 secs. mast -oc results/mast24 -nostatus /Users/t.bailey/meme_git/meme-xstreme/tests/meme/meme.Klf1-200.cd.zoops.html common/Klf1-200.fa