# DREME 4.10.2
#     command: dreme -dna -oc motif.crp0 -e 100 -m 3 -p crp0.s
#   positives: 18 from crp0.s (Fri May 02 13:01:55 AEST 2014)
#   negatives: 18 from shuffled positives
#        host: IMB12-010665
#        when: Wed Oct 28 09:45:40 AEST 2015

MEME version 4.10.2

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.303 C 0.183 G 0.209 T 0.306


MOTIF TCACA DREME

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST       TCACA      TGTGA         16          5   2.5e-004   1.2e+000
#            TCACA      TGTGA         16          5   2.5e-004   1.2e+000

letter-probability matrix: alength= 4 w= 5 nsites= 19 E= 1.2e+000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF GTAA DREME

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST        GTAA       TTAC         15          6   3.0e-003   1.3e+001
#             GTAA       TTAC         15          6   3.0e-003   1.3e+001

letter-probability matrix: alength= 4 w= 4 nsites= 20 E= 1.3e+001
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF GATGC DREME

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST       GATGC      GCATC          7          0   3.8e-003   1.5e+001
#            GATGC      GCATC          7          0   3.8e-003   1.5e+001

letter-probability matrix: alength= 4 w= 5 nsites= 9 E= 1.5e+001
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 0.71 seconds