MOTIF_INDEX MOTIF_SOURCE MOTIF_ID ALT_ID CONSENSUS WIDTH SITES E-VALUE E-VALUE_SOURCE MOST_SIMILAR_MOTIF_SOURCE MOST_SIMILAR_MOTIF URL 1 MEME m1CWGN MEME-1 m1CWGN 6 1156 3.9e-120 MEME 2 common/dna_with_covalent.meme GCAm1C Gm1TGC GCAm1C 6 861 2.5e-024 CENTRIMO 3 common/dna_with_covalent.meme Gm1TGC GCAm1C Gm1TGC 6 861 2.5e-024 CENTRIMO 4 common/dna_with_covalent.meme GCAm7C Gx1TGC GCAm7C 6 870 3.6e-022 CENTRIMO 5 common/dna_with_covalent.meme TGCm1C Gm1GCA TGCm1C 6 999 8.7e-018 CENTRIMO 6 common/dna_with_covalent.meme Gm7GCA TGCx1C Gm7GCA 6 1005 1.9e-017 CENTRIMO 7 common/dna_with_covalent.meme GCm1C1 mGm1GC GCm1C1 6 506 2.0e-017 CENTRIMO 8 common/dna_with_covalent.meme GCAGCA TGCTGC GCAGCA 6 958 6.7e-015 CENTRIMO 9 DREME CAGAGGAC DREME-1 CAGAGGAC 8 78 2.3e-011 DREME 10 DREME CCWAGTCA DREME-11 CCWAGTCA 8 59 2.0e-010 DREME common/Jaspar-subset.meme MA0309.1 (GZF3) http://jaspar.genereg.net/cgi-bin/jaspar_db.pl?ID=MA0309.1&rm=present&collection=CORE 11 DREME 1GHTGTCT DREME-2 1GHTGTCT 8 52 2.5e-010 DREME 12 DREME GKAA DREME-3 GKAA 4 1573 5.0e-010 DREME common/dna_with_covalent.meme CCTTCC (GGAAGG) 13 DREME CTGAGGCW DREME-4 CTGAGGCW 8 134 5.8e-010 DREME 14 common/dna_with_covalent.meme TGCmGC GC1GCA TGCmGC 6 375 4.2e-009 CENTRIMO 15 DREME CCATCY DREME-5 CCATCY 6 351 2.0e-008 DREME common/Jaspar-subset.meme MA0091.1 (TAL1::TCF3) http://jaspar.genereg.net/cgi-bin/jaspar_db.pl?ID=MA0091.1&rm=present&collection=CORE 16 DREME CAAGRGTG DREME-6 CAAGRGTG 8 77 2.3e-008 DREME common/Jaspar-subset.meme MA0163.1 (PLAG1) http://jaspar.genereg.net/cgi-bin/jaspar_db.pl?ID=MA0163.1&rm=present&collection=CORE 17 DREME 1WGCAA DREME-21 1WGCAA 6 47 3.5e-007 DREME common/dna_with_covalent.meme GCAGCA (TGCTGC) 18 DREME CCATCACC DREME-7 CCATCACC 8 60 1.1e-006 DREME common/Jaspar-subset.meme MA0079.2 (SP1) http://jaspar.genereg.net/cgi-bin/jaspar_db.pl?ID=MA0079.2&rm=present&collection=CORE 19 DREME CTTYTGC DREME-8 CTTYTGC 7 114 2.5e-006 DREME common/dna_with_covalent.meme GCAGCA (TGCTGC) 20 DREME 1GACASCT DREME-9 1GACASCT 8 41 4.7e-006 DREME common/Jaspar-subset.meme MA0270.1 (AFT2) http://jaspar.genereg.net/cgi-bin/jaspar_db.pl?ID=MA0270.1&rm=present&collection=CORE 21 DREME ACAAGKC DREME-10 ACAAGKC 7 90 5.2e-006 DREME common/Jaspar-subset.meme MA0035.2 (Gata1) http://jaspar.genereg.net/cgi-bin/jaspar_db.pl?ID=MA0035.2&rm=present&collection=CORE 22 DREME CCTAACTA DREME-12 CCTAACTA 8 31 3.6e-004 DREME common/Jaspar-subset.meme MA0035.2 (Gata1) http://jaspar.genereg.net/cgi-bin/jaspar_db.pl?ID=MA0035.2&rm=present&collection=CORE 23 DREME CTCCTGAW DREME-13 CTCCTGAW 8 34 4.5e-004 DREME common/Jaspar-subset.meme MA0035.2 (Gata1) http://jaspar.genereg.net/cgi-bin/jaspar_db.pl?ID=MA0035.2&rm=present&collection=CORE 24 DREME CCYAGGAC DREME-17 CCYAGGAC 8 54 5.8e-004 DREME common/Jaspar-subset.meme MA0163.1 (PLAG1) http://jaspar.genereg.net/cgi-bin/jaspar_db.pl?ID=MA0163.1&rm=present&collection=CORE 25 DREME GTCm1GA DREME-14 GTCm1GA 7 33 8.6e-004 DREME 26 DREME 1GCCAC DREME-18 1GCCAC 6 56 1.3e-003 DREME common/Jaspar-subset.meme MA0039.2 (Klf4) http://jaspar.genereg.net/cgi-bin/jaspar_db.pl?ID=MA0039.2&rm=present&collection=CORE 27 DREME TCCCAGAA DREME-15 TCCCAGAA 8 28 2.7e-003 DREME 28 DREME CATGGTAS DREME-16 CATGGTAS 8 46 3.0e-003 DREME common/Jaspar-subset.meme MA0091.1 (TAL1::TCF3) http://jaspar.genereg.net/cgi-bin/jaspar_db.pl?ID=MA0091.1&rm=present&collection=CORE 29 DREME CCCAGATM DREME-19 CCCAGATM 8 38 5.7e-003 DREME common/Jaspar-subset.meme MA0091.1 (TAL1::TCF3) http://jaspar.genereg.net/cgi-bin/jaspar_db.pl?ID=MA0091.1&rm=present&collection=CORE 30 DREME AAACACTG DREME-20 AAACACTG 8 29 1.1e-002 DREME 31 DREME CTCACCTR DREME-22 CTCACCTR 8 61 2.0e-002 DREME common/Jaspar-subset.meme MA0270.1 (AFT2) http://jaspar.genereg.net/cgi-bin/jaspar_db.pl?ID=MA0270.1&rm=present&collection=CORE 32 DREME CCCAAKCC DREME-23 CCCAAKCC 8 44 2.7e-002 DREME common/Jaspar-subset.meme MA0039.2 (Klf4) http://jaspar.genereg.net/cgi-bin/jaspar_db.pl?ID=MA0039.2&rm=present&collection=CORE # MEME-ChIP (Motif Analysis of Large Nucleotide Datasets): Version 5.0.1 released on Wed Aug 22 15:26:53 2018 -0700 # The format of this file is described at http://localhost:8080/meme_5.0.1/doc/meme-chip-output-format.html # meme-chip -oc results/meme-chip2 -meme-nmotifs 1 -meme-p 6 -xalph common/dna_with_covalent.alph -bfile common/dna_with_covalent.bg -db common/Jaspar-subset.meme -db common/dna_with_covalent.meme common/dna_with_covalent.fa