Invoking:
  /Library/Frameworks/Mono.framework/Home/bin/mono cismapper.exe -Mode CorrelationMapBuilder -Stage RunPipeline -Config cismapper_example_output_files/BuildMap.xml -HistoneName H3k27ac -RnaSource Cage -Tissue None -LocusFileName P300.bed -MapFileName cismapper_example_output_files/map.tsv
Finished invoke:
  name: build_map  status: 0  time: 1.224071
Invoking:
  /Library/Frameworks/Mono.framework/Home/bin/mono cismapper.exe -Mode CorrelationMapBuilder -Stage RunPipeline -Config cismapper_example_output_files/BuildMap.xml -HistoneName H3k4me3 -RnaSource Cage -Tissue None -LocusFileName P300.bed -MapFileName cismapper_example_output_files/map.tsv
Finished invoke:
  name: build_map  status: 0  time: 1.16975
Invoking:
   cismapper -make-tsv-files -oc cismapper_example_output_files -map-file cismapper_example_output_files/map.tsv -annot-file gencode.v7.transcripts.chr21.gtf
Finished invoke:
  name: make_tsv_files  status: 0  time: 0.240484
Writing output
Done