Omitting transcript filtering
Getting annotation set
	Loading expression file Expression/A549/Cage.gtf ... 
	transcript count: 1389
	gene count: 465
	transcript count: 1389
	Loading expression file Expression/Bj/Cage.gtf ... 
	transcript count: 1389
	gene count: 465
	transcript count: 1389
	Loading expression file Expression/H1hesc/Cage.gtf ... 
	transcript count: 1389
	gene count: 465
	transcript count: 1389
	Loading expression file Expression/Hepg2/Cage.gtf ... 
	transcript count: 1389
	gene count: 465
	transcript count: 1389
	Loading expression file Expression/K562/Cage.gtf ... 
	transcript count: 1389
	gene count: 465
	transcript count: 1389
	Loading expression file Expression/Nhek/Cage.gtf ... 
	transcript count: 1389
	gene count: 465
	transcript count: 1389
	Loading expression file Expression/Sknshra/Cage.gtf ... 
	transcript count: 1389
	gene count: 465
	transcript count: 1389
	Loading expression file Expression/Ag04450/Cage.gtf ... 
	transcript count: 1389
	gene count: 465
	transcript count: 1389
	Loading expression file Expression/Gm12878/Cage.gtf ... 
	transcript count: 1389
	gene count: 465
	transcript count: 1389
	Loading expression file Expression/Helas3/Cage.gtf ... 
	transcript count: 1389
	gene count: 465
	transcript count: 1389
	Loading expression file Expression/Huvec/Cage.gtf ... 
	transcript count: 1389
	gene count: 465
	transcript count: 1389
	Loading expression file Expression/Mcf7/Cage.gtf ... 
	transcript count: 1389
	gene count: 465
	transcript count: 1389
Loading histone data from Histone/H1hesc/wgEncodeBroadHistoneH1hescH3k4me3StdPk.chr21.broadPeak
Loading histone data from Histone/Hepg2/wgEncodeBroadHistoneHepg2H3k4me3StdPk.chr21.broadPeak
Loading histone data from Histone/Hsmm/wgEncodeBroadHistoneHsmmH3k4me3StdPk.chr21.broadPeak
Loading histone data from Histone/K562/wgEncodeBroadHistoneK562H3k4me3StdPk.chr21.broadPeak
Loading histone data from Histone/Nhek/wgEncodeBroadHistoneNhekH3k4me3StdPk.chr21.broadPeak
Loading histone data from Histone/Gm12878/wgEncodeBroadHistoneGm12878H3k4me3StdPk.chr21.broadPeak
Loading histone data from Histone/Helas3/wgEncodeBroadHistoneHelas3H3k4me3StdPk.chr21.broadPeak
Loading histone data from Histone/Hmec/wgEncodeBroadHistoneHmecH3k4me3StdPk.chr21.broadPeak
Loading histone data from Histone/Huvec/wgEncodeBroadHistoneHuvecH3k4me3StdPk.chr21.broadPeak
Loading histone data from Histone/Nhlf/wgEncodeBroadHistoneNhlfH3k4me3StdPk.chr21.broadPeak
Building drm-tss pairs using histone H3k4me3, expression type Cage, and Tissues:
	A549
	Bj
	H1hesc
	Hepg2
	Hsmm
	K562
	Nhek
	Sknshra
	Ag04450
	Gm12878
	Helas3
	Hmec
	Huvec
	Mcf7
	Nhlf
Chromosome chr21

Building correlation vectors chr21

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	### 13 tss-drm pairs with valid data; 12 tsses; 9 drms