MANIFEST.in
README.md
setup.py
kineticsTools/BasicLdaEnricher.py
kineticsTools/KineticWorker.py
kineticsTools/MedakaLdaEnricher.py
kineticsTools/MixtureEstimationMethods.py
kineticsTools/ModificationDecode.py
kineticsTools/MultiSiteCommon.py
kineticsTools/MultiSiteDetection.py
kineticsTools/PositiveControlEnricher.py
kineticsTools/ReferenceUtils.py
kineticsTools/ResultWriter.py
kineticsTools/WorkerProcess.py
kineticsTools/__init__.py
kineticsTools/ipdModel.py
kineticsTools/ipdSummary.py
kineticsTools/loader.py
kineticsTools/pipelineTools.py
kineticsTools/sharedArray.py
kineticsTools/summarizeModifications.py
kineticsTools/tree_predict.c
kineticsTools.egg-info/PKG-INFO
kineticsTools.egg-info/SOURCES.txt
kineticsTools.egg-info/dependency_links.txt
kineticsTools.egg-info/entry_points.txt
kineticsTools.egg-info/not-zip-safe
kineticsTools.egg-info/requires.txt
kineticsTools.egg-info/top_level.txt
kineticsTools/internal/__init__.py
kineticsTools/resources/P6-C4.npz.gz
kineticsTools/resources/SP2-C2.npz.gz
kineticsTools/resources/SP3-C3.npz.gz
kineticsTools/resources/unknown.npz.gz
kineticsTools/tasks/__init__.py
kineticsTools/tasks/gather_bigwig.py
test/test_ReferenceUtils.py
test/test_gather_bigwig.py
test/test_integration.py
test/test_ipdModel.py
test/test_loader.py
test/test_outputs.py
test/test_summarize_modifications.py