##gff-version 3
#hide=gene

# good
PIZI01000001.1	maker	gene	3168	5340	.	-	.	ID=PMZ_0036570;Dbxref=InterPro:IPR000175,PANTHER:PTHR11616,PANTHER:PTHR11616:SF125,Pfam:PF00209,ProSiteProfiles:PS50267,SUPERFAMILY:SSF161070;Name=Slc6a18;desc=Sodium-dependent neutral amino acid transporter B(0)AT3 (Mus musculus);Ontology_term=GO:0005328,GO:0006836,GO:0016021
PIZI01000001.1	maker	mRNA	3168	5340	.	-	.	ID=PMZ_0036570-RA;Parent=PMZ_0036570;_AED=0.21;_eAED=0.25;_QI=0|0|0|1|0|0|2|0|92;Dbxref=InterPro:IPR000175,PANTHER:PTHR11616,PANTHER:PTHR11616:SF125,Pfam:PF00209,ProSiteProfiles:PS50267,SUPERFAMILY:SSF161070;Name=Slc6a18;desc=Sodium-dependent neutral amino acid transporter B(0)AT3 (Mus musculus);Ontology_term=GO:0005328,GO:0006836,GO:0016021
PIZI01000001.1	maker	exon	3168	3304	.	-	.	ID=PMZ_0036570-RA:1;Parent=PMZ_0036570-RA
PIZI01000001.1	maker	CDS	3168	3304	.	-	2	ID=PMZ_0036570-RA:cds;Parent=PMZ_0036570-RA
PIZI01000001.1	maker	exon	5202	5340	.	-	.	ID=PMZ_0036570-RA:2;Parent=PMZ_0036570-RA
PIZI01000001.1	maker	CDS	5202	5340	.	-	0	ID=PMZ_0036570-RA:cds;Parent=PMZ_0036570-RA

# missing gene/mRNA
PIZI01000015.1	maker	exon	15341	15641	.	-	.	ID=PMZ_0034558-RA:16;Parent=PMZ_0034558-RA
PIZI01000015.1	maker	three_prime_UTR	15341	15547	.	-	.	ID=PMZ_0034558-RA:three_prime_utr;Parent=PMZ_0034558-RA
PIZI01000015.1	maker	CDS	15548	15641	.	-	1	ID=PMZ_0034558-RA:cds;Parent=PMZ_0034558-RA
PIZI01000015.1	maker	exon	16979	17058	.	-	.	ID=PMZ_0034558-RA:15;Parent=PMZ_0034558-RA
PIZI01000015.1	maker	CDS	16979	17058	.	-	0	ID=PMZ_0034558-RA:cds;Parent=PMZ_0034558-RA
PIZI01000015.1	maker	exon	17148	17234	.	-	.	ID=PMZ_0034558-RA:14;Parent=PMZ_0034558-RA
PIZI01000015.1	maker	CDS	17148	17234	.	-	0	ID=PMZ_0034558-RA:cds;Parent=PMZ_0034558-RA
PIZI01000015.1	maker	exon	17348	17435	.	-	.	ID=PMZ_0034558-RA:13;Parent=PMZ_0034558-RA
PIZI01000015.1	maker	CDS	17348	17435	.	-	1	ID=PMZ_0034558-RA:cds;Parent=PMZ_0034558-RA
PIZI01000015.1	maker	exon	20079	20262	.	-	.	ID=PMZ_0034558-RA:12;Parent=PMZ_0034558-RA
PIZI01000015.1	maker	CDS	20079	20262	.	-	2	ID=PMZ_0034558-RA:cds;Parent=PMZ_0034558-RA
PIZI01000015.1	maker	exon	21547	21661	.	-	.	ID=PMZ_0034558-RA:11;Parent=PMZ_0034558-RA
PIZI01000015.1	maker	CDS	21547	21661	.	-	0	ID=PMZ_0034558-RA:cds;Parent=PMZ_0034558-RA
PIZI01000015.1	maker	exon	22072	22223	.	-	.	ID=PMZ_0034558-RA:10;Parent=PMZ_0034558-RA
PIZI01000015.1	maker	CDS	22072	22223	.	-	2	ID=PMZ_0034558-RA:cds;Parent=PMZ_0034558-RA
PIZI01000015.1	maker	exon	24855	24987	.	-	.	ID=PMZ_0034558-RA:9;Parent=PMZ_0034558-RA
PIZI01000015.1	maker	CDS	24855	24987	.	-	0	ID=PMZ_0034558-RA:cds;Parent=PMZ_0034558-RA
PIZI01000015.1	maker	exon	25799	25833	.	-	.	ID=PMZ_0034558-RA:8;Parent=PMZ_0034558-RA
PIZI01000015.1	maker	CDS	25799	25833	.	-	2	ID=PMZ_0034558-RA:cds;Parent=PMZ_0034558-RA
PIZI01000015.1	maker	exon	26439	26617	.	-	.	ID=PMZ_0034558-RA:7;Parent=PMZ_0034558-RA
PIZI01000015.1	maker	CDS	26439	26617	.	-	1	ID=PMZ_0034558-RA:cds;Parent=PMZ_0034558-RA
PIZI01000015.1	maker	exon	26742	26880	.	-	.	ID=PMZ_0034558-RA:6;Parent=PMZ_0034558-RA
PIZI01000015.1	maker	CDS	26742	26880	.	-	2	ID=PMZ_0034558-RA:cds;Parent=PMZ_0034558-RA
PIZI01000015.1	maker	exon	27149	27230	.	-	.	ID=PMZ_0034558-RA:5;Parent=PMZ_0034558-RA
PIZI01000015.1	maker	CDS	27149	27230	.	-	0	ID=PMZ_0034558-RA:cds;Parent=PMZ_0034558-RA
PIZI01000015.1	maker	exon	28425	28736	.	-	.	ID=PMZ_0034558-RA:4;Parent=PMZ_0034558-RA
PIZI01000015.1	maker	CDS	28425	28736	.	-	0	ID=PMZ_0034558-RA:cds;Parent=PMZ_0034558-RA
PIZI01000015.1	maker	exon	29158	29212	.	-	.	ID=PMZ_0034558-RA:3;Parent=PMZ_0034558-RA
PIZI01000015.1	maker	CDS	29158	29212	.	-	1	ID=PMZ_0034558-RA:cds;Parent=PMZ_0034558-RA
PIZI01000015.1	maker	exon	29576	29704	.	-	.	ID=PMZ_0034558-RA:2;Parent=PMZ_0034558-RA
PIZI01000015.1	maker	CDS	29576	29685	.	-	0	ID=PMZ_0034558-RA:cds;Parent=PMZ_0034558-RA
PIZI01000015.1	maker	five_prime_UTR	29686	29704	.	-	.	ID=PMZ_0034558-RA:five_prime_utr;Parent=PMZ_0034558-RA
PIZI01000015.1	maker	exon	30287	30564	.	-	.	ID=PMZ_0034558-RA:1;Parent=PMZ_0034558-RA
PIZI01000015.1	maker	five_prime_UTR	30287	30564	.	-	.	ID=PMZ_0034558-RA:five_prime_utr;Parent=PMZ_0034558-RA

# good
PIZI01000173.1	maker	gene	18750	30931	.	-	.	ID=PMZ_0046682;Dbxref=Coils:Coil,PANTHER:PTHR22846,PANTHER:PTHR22846:SF38;Name=TBL1XR1;desc=F-box-like/WD repeat-containing protein TBL1XR1 (Homo sapiens)
PIZI01000173.1	maker	mRNA	18750	30931	.	-	.	ID=PMZ_0046682-RA;Parent=PMZ_0046682;_AED=0.72;_eAED=0.72;_QI=0|0|0|0.33|0.5|0.66|3|0|123;Dbxref=Coils:Coil,PANTHER:PTHR22846,PANTHER:PTHR22846:SF38;Name=TBL1XR1;desc=F-box-like/WD repeat-containing protein TBL1XR1 (Homo sapiens)
PIZI01000173.1	maker	exon	18750	18967	.	-	.	ID=PMZ_0046682-RA:3;Parent=PMZ_0046682-RA
PIZI01000173.1	maker	CDS	18750	18967	.	-	2	ID=PMZ_0046682-RA:cds;Parent=PMZ_0046682-RA
PIZI01000173.1	maker	exon	24133	24268	.	-	.	ID=PMZ_0046682-RA:2;Parent=PMZ_0046682-RA
PIZI01000173.1	maker	CDS	24133	24268	.	-	0	ID=PMZ_0046682-RA:cds;Parent=PMZ_0046682-RA
PIZI01000173.1	maker	exon	30914	30931	.	-	.	ID=PMZ_0046682-RA:1;Parent=PMZ_0046682-RA
PIZI01000173.1	maker	CDS	30914	30931	.	-	0	ID=PMZ_0046682-RA:cds;Parent=PMZ_0046682-RA
PIZI01000173.1	maker	gene	76375	91958	.	+	.	ID=PMZ_0037103;Dbxref=Gene3D:G3DSA:3.40.50.300,InterPro:IPR000629,InterPro:IPR011545,InterPro:IPR014001,InterPro:IPR027417,PANTHER:PTHR24031,PANTHER:PTHR24031:SF226,Pfam:PF00270,ProSitePatterns:PS00039,ProSiteProfiles:PS51192,SMART:SM00487,SUPERFAMILY:SSF52540;Name=EIF4A2;desc=Eukaryotic initiation factor 4A-II (Gallus gallus);Ontology_term=GO:0003676,GO:0005524
PIZI01000173.1	maker	mRNA	76375	91958	.	+	.	ID=PMZ_0037103-RA;Parent=PMZ_0037103;_AED=0.29;_eAED=0.29;_QI=0|0.28|0.37|0.87|0.57|0.5|8|154|292;Dbxref=Gene3D:G3DSA:3.40.50.300,InterPro:IPR000629,InterPro:IPR011545,InterPro:IPR014001,InterPro:IPR027417,PANTHER:PTHR24031,PANTHER:PTHR24031:SF226,Pfam:PF00270,ProSitePatterns:PS00039,ProSiteProfiles:PS51192,SMART:SM00487,SUPERFAMILY:SSF52540;Name=EIF4A2;desc=Eukaryotic initiation factor 4A-II (Gallus gallus);Ontology_term=GO:0003676,GO:0005524
PIZI01000173.1	maker	exon	76375	76458	.	+	.	ID=PMZ_0037103-RA:1;Parent=PMZ_0037103-RA
PIZI01000173.1	maker	CDS	76375	76458	.	+	0	ID=PMZ_0037103-RA:cds;Parent=PMZ_0037103-RA
PIZI01000173.1	maker	exon	80572	80632	.	+	.	ID=PMZ_0037103-RA:2;Parent=PMZ_0037103-RA
PIZI01000173.1	maker	CDS	80572	80632	.	+	0	ID=PMZ_0037103-RA:cds;Parent=PMZ_0037103-RA
PIZI01000173.1	maker	exon	82280	82323	.	+	.	ID=PMZ_0037103-RA:3;Parent=PMZ_0037103-RA
PIZI01000173.1	maker	CDS	82280	82323	.	+	2	ID=PMZ_0037103-RA:cds;Parent=PMZ_0037103-RA
PIZI01000173.1	maker	exon	83498	83776	.	+	.	ID=PMZ_0037103-RA:4;Parent=PMZ_0037103-RA
PIZI01000173.1	maker	CDS	83498	83776	.	+	0	ID=PMZ_0037103-RA:cds;Parent=PMZ_0037103-RA
PIZI01000173.1	maker	exon	85008	85151	.	+	.	ID=PMZ_0037103-RA:5;Parent=PMZ_0037103-RA
PIZI01000173.1	maker	CDS	85008	85151	.	+	0	ID=PMZ_0037103-RA:cds;Parent=PMZ_0037103-RA
PIZI01000173.1	maker	exon	86712	86826	.	+	.	ID=PMZ_0037103-RA:6;Parent=PMZ_0037103-RA
PIZI01000173.1	maker	CDS	86712	86826	.	+	0	ID=PMZ_0037103-RA:cds;Parent=PMZ_0037103-RA
PIZI01000173.1	maker	exon	90108	90114	.	+	.	ID=PMZ_0037103-RA:7;Parent=PMZ_0037103-RA
PIZI01000173.1	maker	CDS	90108	90114	.	+	2	ID=PMZ_0037103-RA:cds;Parent=PMZ_0037103-RA
PIZI01000173.1	maker	exon	91660	91958	.	+	.	ID=PMZ_0037103-RA:8;Parent=PMZ_0037103-RA
PIZI01000173.1	maker	CDS	91660	91804	.	+	1	ID=PMZ_0037103-RA:cds;Parent=PMZ_0037103-RA
PIZI01000173.1	maker	three_prime_UTR	91805	91958	.	+	.	ID=PMZ_0037103-RA:three_prime_utr;Parent=PMZ_0037103-RA
PIZI01000173.1	maker	gene	185196	210091	.	+	.	ID=PMZ_0046683;Dbxref=Coils:Coil,Gene3D:G3DSA:3.30.40.10,InterPro:IPR013083,InterPro:IPR021852,PANTHER:PTHR15382,PANTHER:PTHR15382:SF2,Pfam:PF11938;Name=cnpy3;desc=Protein canopy homolog 3 (Xenopus tropicalis)
PIZI01000173.1	maker	mRNA	185196	210091	.	+	.	ID=PMZ_0046683-RA;Parent=PMZ_0046683;_AED=0.67;_eAED=0.73;_QI=0|0.33|0.25|0.75|0.33|0.5|4|0|231;Dbxref=Coils:Coil,Gene3D:G3DSA:3.30.40.10,InterPro:IPR013083,InterPro:IPR021852,PANTHER:PTHR15382,PANTHER:PTHR15382:SF2,Pfam:PF11938;Name=cnpy3;desc=Protein canopy homolog 3 (Xenopus tropicalis)
PIZI01000173.1	maker	exon	185196	185474	.	+	.	ID=PMZ_0046683-RA:1;Parent=PMZ_0046683-RA
PIZI01000173.1	maker	CDS	185196	185474	.	+	0	ID=PMZ_0046683-RA:cds;Parent=PMZ_0046683-RA
PIZI01000173.1	maker	exon	199432	199494	.	+	.	ID=PMZ_0046683-RA:2;Parent=PMZ_0046683-RA
PIZI01000173.1	maker	CDS	199432	199494	.	+	0	ID=PMZ_0046683-RA:cds;Parent=PMZ_0046683-RA
PIZI01000173.1	maker	exon	206846	206963	.	+	.	ID=PMZ_0046683-RA:3;Parent=PMZ_0046683-RA
PIZI01000173.1	maker	CDS	206846	206963	.	+	0	ID=PMZ_0046683-RA:cds;Parent=PMZ_0046683-RA
PIZI01000173.1	maker	exon	209856	210091	.	+	.	ID=PMZ_0046683-RA:4;Parent=PMZ_0046683-RA
PIZI01000173.1	maker	CDS	209856	210091	.	+	2	ID=PMZ_0046683-RA:cds;Parent=PMZ_0046683-RA
PIZI01000173.1	maker	gene	251914	254060	.	-	.	ID=PMZ_0046684;Dbxref=InterPro:IPR001863,PANTHER:PTHR10822,Pfam:PF01153,Phobius:CYTOPLASMIC_DOMAIN,Phobius:NON_CYTOPLASMIC_DOMAIN,Phobius:TRANSMEMBRANE;Name=GPC1;desc=Glypican-1 (Bos taurus);Ontology_term=GO:0005578,GO:0016020,GO:0043395
PIZI01000173.1	maker	mRNA	251914	254060	.	-	.	ID=PMZ_0046684-RA;Parent=PMZ_0046684;_AED=1.00;_eAED=1.00;_QI=0|0|0|0|0.66|0.5|4|0|191;Dbxref=InterPro:IPR001863,PANTHER:PTHR10822,Pfam:PF01153,Phobius:CYTOPLASMIC_DOMAIN,Phobius:NON_CYTOPLASMIC_DOMAIN,Phobius:TRANSMEMBRANE;Name=GPC1;desc=Glypican-1 (Bos taurus);Ontology_term=GO:0005578,GO:0016020,GO:0043395
PIZI01000173.1	maker	exon	251914	252126	.	-	.	ID=PMZ_0046684-RA:4;Parent=PMZ_0046684-RA
PIZI01000173.1	maker	CDS	251914	252126	.	-	0	ID=PMZ_0046684-RA:cds;Parent=PMZ_0046684-RA
PIZI01000173.1	maker	exon	252238	252450	.	-	.	ID=PMZ_0046684-RA:3;Parent=PMZ_0046684-RA
PIZI01000173.1	maker	CDS	252238	252450	.	-	0	ID=PMZ_0046684-RA:cds;Parent=PMZ_0046684-RA
PIZI01000173.1	maker	exon	253227	253307	.	-	.	ID=PMZ_0046684-RA:2;Parent=PMZ_0046684-RA
PIZI01000173.1	maker	CDS	253227	253307	.	-	0	ID=PMZ_0046684-RA:cds;Parent=PMZ_0046684-RA
PIZI01000173.1	maker	exon	253992	254060	.	-	.	ID=PMZ_0046684-RA:1;Parent=PMZ_0046684-RA
PIZI01000173.1	maker	CDS	253992	254060	.	-	0	ID=PMZ_0046684-RA:cds;Parent=PMZ_0046684-RA

# missing gene/mRNA
PIZI01000172.1	maker	exon	194396	194465	.	+	.	ID=PMZ_0037271-RA:1;Parent=PMZ_0037271-RA
PIZI01000172.1	maker	five_prime_UTR	194396	194430	.	+	.	ID=PMZ_0037271-RA:five_prime_utr;Parent=PMZ_0037271-RA
PIZI01000172.1	maker	CDS	194431	194465	.	+	0	ID=PMZ_0037271-RA:cds;Parent=PMZ_0037271-RA
PIZI01000172.1	maker	exon	194478	194495	.	-	.	ID=PMZ_0046722-RA:1;Parent=PMZ_0046722-RA
PIZI01000172.1	maker	CDS	194478	194495	.	-	0	ID=PMZ_0046722-RA:cds;Parent=PMZ_0046722-RA
PIZI01000172.1	maker	exon	195085	195131	.	+	.	ID=PMZ_0037271-RA:2;Parent=PMZ_0037271-RA
PIZI01000172.1	maker	CDS	195085	195131	.	+	1	ID=PMZ_0037271-RA:cds;Parent=PMZ_0037271-RA
PIZI01000172.1	maker	exon	196162	196297	.	+	.	ID=PMZ_0037271-RA:3;Parent=PMZ_0037271-RA
PIZI01000172.1	maker	CDS	196162	196297	.	+	2	ID=PMZ_0037271-RA:cds;Parent=PMZ_0037271-RA
PIZI01000172.1	maker	exon	197408	197534	.	+	.	ID=PMZ_0037271-RA:4;Parent=PMZ_0037271-RA
PIZI01000172.1	maker	CDS	197408	197534	.	+	1	ID=PMZ_0037271-RA:cds;Parent=PMZ_0037271-RA
PIZI01000172.1	maker	exon	199096	199266	.	+	.	ID=PMZ_0037271-RA:5;Parent=PMZ_0037271-RA
PIZI01000172.1	maker	CDS	199096	199266	.	+	0	ID=PMZ_0037271-RA:cds;Parent=PMZ_0037271-RA
PIZI01000172.1	maker	exon	202292	202483	.	+	.	ID=PMZ_0037271-RA:6;Parent=PMZ_0037271-RA
PIZI01000172.1	maker	CDS	202292	202483	.	+	0	ID=PMZ_0037271-RA:cds;Parent=PMZ_0037271-RA
PIZI01000172.1	maker	gene	228330	235607	.	+	.	ID=PMZ_0037762;Dbxref=InterPro:IPR024779,PANTHER:PTHR23358,Pfam:PF12851;Name=TET3;desc=Methylcytosine dioxygenase TET3 (Homo sapiens)
PIZI01000172.1	maker	mRNA	228330	235607	.	+	.	ID=PMZ_0037762-RA;Parent=PMZ_0037762;_AED=0.28;_eAED=0.64;_QI=0|0|0|0.66|1|1|3|0|455;Dbxref=InterPro:IPR024779,PANTHER:PTHR23358,Pfam:PF12851;Name=TET3;desc=Methylcytosine dioxygenase TET3 (Homo sapiens)
PIZI01000172.1	maker	exon	228330	228766	.	+	.	ID=PMZ_0037762-RA:1;Parent=PMZ_0037762-RA
PIZI01000172.1	maker	CDS	228330	228766	.	+	0	ID=PMZ_0037762-RA:cds;Parent=PMZ_0037762-RA
PIZI01000172.1	maker	exon	231596	231967	.	+	.	ID=PMZ_0037762-RA:2;Parent=PMZ_0037762-RA
PIZI01000172.1	maker	CDS	231596	231967	.	+	1	ID=PMZ_0037762-RA:cds;Parent=PMZ_0037762-RA
PIZI01000172.1	maker	exon	235049	235607	.	+	.	ID=PMZ_0037762-RA:3;Parent=PMZ_0037762-RA
PIZI01000172.1	maker	CDS	235049	235607	.	+	1	ID=PMZ_0037762-RA:cds;Parent=PMZ_0037762-RA

# good
PIZI01011959.1	maker	gene	1	227	.	+	.	ID=PMZ_0039186;Dbxref=Gene3D:G3DSA:1.10.287.70,PANTHER:PTHR18966,PANTHER:PTHR18966:SF157,Phobius:CYTOPLASMIC_DOMAIN,Phobius:NON_CYTOPLASMIC_DOMAIN,Phobius:TRANSMEMBRANE;Name=GRIA2;desc=Glutamate receptor 2 (Homo sapiens)
PIZI01011959.1	maker	mRNA	1	227	.	+	.	ID=PMZ_0039186-RA;Parent=PMZ_0039186;_AED=0.01;_eAED=0.31;_QI=68|-1|0|1|-1|1|1|0|52;Dbxref=Gene3D:G3DSA:1.10.287.70,PANTHER:PTHR18966,PANTHER:PTHR18966:SF157,Phobius:CYTOPLASMIC_DOMAIN,Phobius:NON_CYTOPLASMIC_DOMAIN,Phobius:TRANSMEMBRANE;Name=GRIA2;desc=Glutamate receptor 2 (Homo sapiens)
PIZI01011959.1	maker	exon	1	227	.	+	.	ID=PMZ_0039186-RA:1;Parent=PMZ_0039186-RA
PIZI01011959.1	maker	five_prime_UTR	1	68	.	+	.	ID=PMZ_0039186-RA:five_prime_utr;Parent=PMZ_0039186-RA
PIZI01011959.1	maker	CDS	69	227	.	+	0	ID=PMZ_0039186-RA:cds;Parent=PMZ_0039186-RA
PIZI01011965.1	maker	gene	266	1004	.	+	.	ID=PMZ_0047765;Note=Protein of unknown function
PIZI01011965.1	maker	mRNA	266	1004	.	+	.	ID=PMZ_0047765-RA;Parent=PMZ_0047765;_AED=1.00;_eAED=1.00;_QI=0|0|0|0|0|0|2|0|44;Note=Protein of unknown function
PIZI01011965.1	maker	exon	266	337	.	+	.	ID=PMZ_0047765-RA:1;Parent=PMZ_0047765-RA
PIZI01011965.1	maker	CDS	266	337	.	+	0	ID=PMZ_0047765-RA:cds;Parent=PMZ_0047765-RA
PIZI01011965.1	maker	exon	942	1004	.	+	.	ID=PMZ_0047765-RA:2;Parent=PMZ_0047765-RA
PIZI01011965.1	maker	CDS	942	1004	.	+	0	ID=PMZ_0047765-RA:cds;Parent=PMZ_0047765-RA