##fileformat=VCFv4.0
#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO
# Test intersections of nonzero regions (some adjacent but not overlapping,
# some substitutions and some deletions) and zero-length insertions:
# primary    ><pil       -------p------            ><pi
#                  -----pl------
#                               -----pr-----
# secondary  - <-> <---->   <>         <>   <>  <->
#                                               <----->
#                                                   <->
#                       -jBS*          -jAS*       -leftPiS*
#                        -leftS*      -rightS*      -rightPiS*
#                       ><insLeft     ><insRight   ><insPi
#                                                 ><insJBInsPi
#                                                   ><insJAInsPi
# track name=primary
chr1	 20     pil	N	NA	1	PASS	.
chr1	150	pl	<INS>	<DEL>	1	PASS	END=250
chr1	200	p	<INS>	<DEL>	1	PASS	END=300
chr1	250	pr	<INS>	<DEL>	1	PASS	END=350
chr1	400	pi	N	NA	1	PASS	.