/* esl_config.h.in  [input to configure]
 * 
 * System-dependent configuration of Easel, by autoconf.
 * 
 * This file should be included in all Easel .c files before
 * anything else, because it may set #define's that control
 * behaviour of system includes and system libraries. An example
 * is large file support.
 * 
 * SVN $Id$
 * SRE, Fri Mar  3 08:03:32 2006 [St. Louis]
 */
#ifndef ESL_CONFIG_INCLUDED
#define ESL_CONFIG_INCLUDED

/* Version info.
 */
#undef EASEL_VERSION    
#undef EASEL_DATE      
#undef EASEL_COPYRIGHT 
#undef EASEL_LICENSE   

/* Large file support
 * Must precede any header file inclusion.
 */
#undef _FILE_OFFSET_BITS
#undef _LARGE_FILES
#undef _LARGEFILE_SOURCE

/* Debugging verbosity (0=none;3=most verbose)
 */
#undef eslDEBUGLEVEL

/* System headers
 */
#undef HAVE_UNISTD_H
#undef HAVE_STDINT_H
#undef HAVE_INTTYPES_H
#undef HAVE_SYS_TYPES_H
#undef HAVE_SYS_SYSCTL_H
#undef HAVE_ENDIAN_H

/* Types
 */
#undef WORDS_BIGENDIAN
#undef int8_t
#undef int16_t
#undef int32_t
#undef int64_t
#undef uint8_t
#undef uint16_t
#undef uint32_t
#undef uint64_t
#undef off_t

/* Optional packages
 */
#undef HAVE_LIBGSL

/* Optional parallel implementation support
 */
#undef HAVE_SSE2
#undef HAVE_VMX
#undef HAVE_MPI

#undef HAVE_SSE2_CAST

/* Functions
 */
#undef HAVE_MKSTEMP
#undef HAVE_POPEN
#undef HAVE_STRCASECMP
#undef HAVE_TIMES
#undef HAVE_GETPID
#undef HAVE_SYSCTL
#undef HAVE_SYSCONF
#undef HAVE_FSEEKO

#undef HAVE_PTHREADS

/*****************************************************************
 * Available augmentations.
 * 
 * If you grab a single module from Easel to use it by itself,
 * leave all these #undef'd; you have no augmentations.
 * 
 * If you grab additional Easel .c files, you can enable any
 * augmentations they provide to other modules by #defining the
 * modules you have below. Alternatively, you can -D them on
 * the compile line, as in cc -DeslAUGMENT_SSI -DeslAUGMENT_MSA.
 * 
 * If you compile and install the complete Easel library, all of these
 * get #defined automatically by ./configure, plus the eslLIBRARY flag
 * which means the full library with all augmentations is
 * available. So, if you steal files from an installed library, just
 * set these all back to #undef (depending on which files you have).
 *****************************************************************/
#undef eslLIBRARY

#ifndef eslLIBRARY
#undef eslAUGMENT_ALPHABET
#undef eslAUGMENT_NCBI
#undef eslAUGMENT_DMATRIX
#undef eslAUGMENT_FILEPARSER
#undef eslAUGMENT_GEV
#undef eslAUGMENT_GUMBEL
#undef eslAUGMENT_HISTOGRAM
#undef eslAUGMENT_KEYHASH 
#undef eslAUGMENT_MINIMIZER
#undef eslAUGMENT_MSA		
#undef eslAUGMENT_RANDOM
#undef eslAUGMENT_SSI
#undef eslAUGMENT_STATS
#endif

#ifdef eslLIBRARY
#define eslAUGMENT_ALPHABET
#define eslAUGMENT_NCBI
#define eslAUGMENT_DMATRIX
#define eslAUGMENT_FILEPARSER
#define eslAUGMENT_GEV
#define eslAUGMENT_GUMBEL
#define eslAUGMENT_HISTOGRAM
#define eslAUGMENT_KEYHASH 
#define eslAUGMENT_MINIMIZER
#define eslAUGMENT_MSA		
#define eslAUGMENT_RANDOM
#define eslAUGMENT_SSI
#define eslAUGMENT_STATS
#endif


#endif /*ESL_CONFIG_INCLUDED*/
/*****************************************************************
 * Easel - a library of C functions for biological sequence analysis
 * Version h3.0; March 2010
 * Copyright (C) 2010 Howard Hughes Medical Institute.
 * Other copyrights also apply. See the COPYRIGHT file for a full list.
 * 
 * Easel is distributed under the Janelia Farm Software License, a BSD
 * license. See the LICENSE file for more details.
 *****************************************************************/