Index of /kundaje/marinovg/oak/programs/ctb-khmer-2691124/sandbox

	Name	Last modified	Size	Description
	Parent Directory		-
	abund-ablate-reads.py	2012-04-17 01:41	1.1K
	abundance-hist-by-position.py	2012-04-17 01:41	439
	agglom.py	2012-04-17 01:41	1.8K
	assemble-individual-partitions.py	2012-04-17 01:41	2.8K
	assembly-diff-2.py	2012-04-17 01:41	829
	assembly-diff.py	2012-04-17 01:41	1.2K
	assemstats.py	2012-04-17 01:41	2.8K
	assemstats2.py	2012-04-17 01:41	3.0K
	assemstats3.py	2012-04-17 01:41	2.4K
	bench-graphsize-orig.py	2012-04-17 01:41	1.0K
	bench-graphsize-th.py	2012-04-17 01:41	1.9K
	bloom_count.py	2012-04-17 01:41	662
	bloom_count_intersection.py	2012-04-17 01:41	1.3K
	bowtie-parser.py	2012-04-17 01:41	354
	calc-degree.py	2012-04-17 01:41	734
	calc-kmer-partition-counts.py	2012-04-17 01:41	395
	calc-kmer-read-abunds.py	2012-04-17 01:41	1.0K
	calc-kmer-read-stats.py	2012-04-17 01:41	891
	calc-kmer-to-partition-ratio.py	2012-04-17 01:41	675
	calc-median-distribution.py	2012-04-17 01:41	964
	calc-sequence-entropy.py	2012-04-17 01:41	667
	choose-largest-assembly.py	2012-04-17 01:41	1.0K
	combine-pe.py	2012-04-17 01:41	1.2K
	compare-partitions.py	2012-04-17 01:41	1.2K
	consume-and-traverse.py	2012-04-17 01:41	841
	contig-coverage.py	2012-04-17 01:41	2.3K
	count-circum-by-position.py	2012-04-17 01:41	953
	count-density-by-position.py	2012-04-17 01:41	1.0K
	count-distance-to-volume.py	2012-04-17 01:41	738
	count-median-abund-by-partition.py	2012-04-17 01:41	943
	count-shared-kmers-btw-assemblies.py	2012-04-17 01:41	2.0K
	count-within-radius.py	2012-04-17 01:41	942
	ctb-iterative-bench-2-old.py	2012-04-17 01:41	1.9K
	ctb-iterative-bench-2.py	2012-04-17 01:41	3.9K
	ctb-iterative-bench.py	2012-04-17 01:41	796
	degree-by-position.py	2012-04-17 01:41	741
	discard-high-abund.py	2012-04-17 01:41	1.2K
	discard-pre-high-abund.py	2012-04-17 01:41	4.0K
	do-intertable-part.py	2012-04-17 01:41	165
	do-partition-2.py	2012-04-17 01:41	4.3K
	do-partition-stop.py	2012-04-17 01:41	4.8K
	do-partition.py	2012-04-17 01:41	4.7K
	do-subset-merge.py	2012-04-17 01:41	2.1K
	do-th-subset-calc.py	2012-04-17 01:41	1.8K
	do-th-subset-load.py	2012-04-17 01:41	958
	do-th-subset-save.py	2012-04-17 01:41	2.5K
	example-partition.sh	2012-04-17 01:41	119
	extract-long-sequences.py	2012-04-17 01:41	257
	extract-partitions.py	2012-04-17 01:41	3.1K
	extract-single-partition.py	2012-04-17 01:41	625
	extract-surrender.py	2012-04-17 01:41	954
	fasta-to-abundance-hist.py	2012-04-17 01:41	307
	fasta-to-fastq.py	2012-04-17 01:41	142
	fastq-to-fasta.py	2012-04-17 01:41	369
	filter-above-median.py	2012-04-17 01:41	1.5K
	filter-abund-output-by-length.py	2012-04-17 01:41	2.1K
	filter-area.py	2012-04-17 01:41	318
	filter-below-abund.py	2012-04-17 01:41	1.1K
	filter-degree.py	2012-04-17 01:41	1.4K
	filter-density-explosion.py	2012-04-17 01:41	1.6K
	filter-exact.py	2012-05-09 15:15	850
	filter-ham1.py	2012-04-17 01:41	1.2K
	filter-if-present.py	2012-04-17 01:41	276
	filter-inexact-255.py	2012-04-17 01:41	875
	filter-inexact-all.py	2012-04-17 01:41	862
	filter-inexact-any.py	2012-04-17 01:41	856
	filter-inexact-once.py	2012-04-17 01:41	848
	filter-inexact-run.py	2012-04-17 01:41	858
	filter-max255.py	2012-04-17 01:41	1.2K
	filter-min2-multi.py	2012-04-17 01:41	1.2K
	filter-sodd.py	2012-04-17 01:41	908
	filter-subsets-by-partsize.py	2012-04-17 01:41	1.4K
	find-high-abund-kmers.py	2012-04-17 01:41	2.0K
	find-unpart.py	2012-04-17 01:41	1.0K
	get-occupancy.py	2012-04-17 01:41	703
	get-occupancy2.py	2012-04-17 01:41	423
	graph-partition-separate.py	2012-04-17 01:41	2.3K
	graph-size-circum-trim.py	2012-04-17 01:41	4.5K
	graph-size-degree-trim.py	2012-04-17 01:41	3.5K
	graph-size-py.py	2012-04-17 01:41	1.1K
	graph-size.py	2012-04-17 01:41	1.3K
	hi-lo-abundance-by-position.py	2012-04-17 01:41	520
	interleave.py	2012-04-17 01:41	666
	join_pe.py	2012-04-17 01:41	1.7K
	keep-stoptags.py	2012-04-17 01:41	1.2K
	label-pairs.py	2012-04-17 01:41	320
	length-dist.py	2012-04-17 01:41	300
	load-ht-and-tags.py	2012-04-17 01:41	806
	load-into-hashbits.py	2012-04-17 01:41	3.0K
	make-coverage-by-position-for-node.py	2012-04-17 01:41	1.0K
	make-coverage-histogram.py	2012-04-17 01:41	1.0K
	make-random.py	2012-04-17 01:41	417
	make-read-stats.py	2012-04-17 01:41	343
	memusg	2012-04-17 01:41	1.0K
	multi-abyss.py	2012-04-17 01:41	751
	multi-rename.py	2012-04-17 01:41	258
	multi-stats.py	2012-04-17 01:41	1.4K
	multi-velvet.py	2012-04-17 01:41	1.6K
	oases-assemble.sh	2012-04-17 01:41	395
	occupy.py	2012-04-17 01:41	255
	off-by-one.py	2012-04-17 01:41	575
	parse-bowtie-pe.py	2012-04-17 01:41	557
	parse-stats.py	2012-04-17 01:41	587
	partition-and-extract.sh	2012-04-17 01:41	152
	partition-by-contig.py	2012-04-17 01:41	705
	partition-by-contig2.py	2012-04-17 01:41	814
	partition-size-dist.py	2012-04-17 01:41	1.0K
	path-compare-to-vectors.py	2012-04-17 01:41	564
	print-exact-abund-kmer.py	2012-04-17 01:41	292
	print-high-density-kmers.py	2012-04-17 01:41	902
	print-stoptags.py	2012-04-17 01:41	178
	print-tagset.py	2012-04-17 01:41	188
	quality-trim-pe.py	2012-04-17 01:41	1.1K
	quality-trim.py	2012-04-17 01:41	1.1K
	quick-assemble.sh	2012-04-17 01:41	210
	readmask-do-filter.py	2012-04-17 01:41	227
	reformat.py	2012-04-17 01:41	252
	remove-N.py	2012-04-17 01:41	337
	renumber-partitions.py	2012-04-17 01:41	808
	shuffle-fasta.py	2012-04-17 01:41	321
	shuffle-reverse-rotary.py	2012-04-17 01:41	610
	softmask-high-abund.py	2012-04-17 01:41	1.4K
	split-N.py	2012-04-17 01:41	499
	split-fasta-on-circum.py	2012-04-17 01:41	1.3K
	split-fasta-on-circum2.py	2012-04-17 01:41	2.6K
	split-fasta-on-circum3.py	2012-04-17 01:41	1.8K
	split-fasta-on-circum4.py	2012-04-17 01:41	1.8K
	split-fasta-on-degree-th.py	2012-04-17 01:41	3.0K
	split-fasta-on-degree.py	2012-04-17 01:41	1.1K
	split-fasta-on-density.py	2012-04-17 01:41	1.9K
	split-fasta.py	2012-04-17 01:41	496
	split-pe.py	2012-04-17 01:41	499
	split-reads-on-median-diff.py	2012-04-17 01:41	858
	split-sequences-by-length.py	2012-04-17 01:41	1.2K
	stats-assemble.sh	2012-04-17 01:41	137
	stoptag-abundance-ham1-hist.py	2012-04-17 01:41	771
	stoptag-abundance-hist.py	2012-04-17 01:41	750
	stoptags-by-position.py	2012-04-17 01:41	574
	strip-and-split-for-assembly.py	2012-04-17 01:41	1.7K
	strip-partition.py	2012-04-17 01:41	222
	subset-report.py	2012-04-17 01:41	576
	summarize.py	2012-04-17 01:41	593
	sweep-out-reads-with-contigs.py	2012-04-17 01:41	614
	test.sh	2012-04-17 01:41	213
	test_scripts.py	2012-04-17 01:41	2.9K
	traverse-contigs.py	2012-04-17 01:41	2.1K
	traverse-from-reads.py	2012-04-17 01:41	867
	uniqify-sequences.py	2012-04-17 01:41	1.3K
	update-aws.sh	2012-04-17 01:41	144
	validate-partitioning.py	2012-04-17 01:41	312
	velvet-assemble-se.sh	2012-04-17 01:41	280
	velvet-assemble.sh	2012-04-17 01:41	549
	write-interleave.py	2012-04-17 01:41	458