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| Name | Last modified | Size | Description |
|---|---|---|---|---|
| Parent Directory | - | ||
| BundleMethod.hpp | 2008-08-14 00:08 | 1.7K | |
| BundleMethod.ipp | 2008-08-14 00:08 | 9.2K | |
| CGLinear.hpp | 2008-08-14 00:08 | 1.5K | |
| CGLinear.ipp | 2008-08-14 00:08 | 3.5K | |
| CGOptimizationWrapper.hpp | 2008-08-14 00:08 | 1.3K | |
| CGOptimizationWrapper.ipp | 2008-08-14 00:08 | 2.4K | |
| ComputationEngine.hpp | 2008-08-14 00:08 | 4.1K | |
| ComputationEngine.ipp | 2008-08-14 00:08 | 23K | |
| ComputationWrapper.hpp | 2008-08-14 00:08 | 3.1K | |
| ComputationWrapper.ipp | 2008-08-14 00:08 | 17K | |
| Config.hpp | 2008-08-14 00:08 | 9.8K | |
| Contrafold.cpp | 2008-08-14 00:08 | 24K | |
| Contrafold.o | 2012-04-19 23:41 | 638K | |
| Defaults.ipp | 2012-04-19 23:40 | 113K | |
| DistributedComputation.hpp | 2008-08-14 00:08 | 7.0K | |
| DistributedComputation.ipp | 2008-08-14 00:08 | 15K | |
| EncapsulatedPostScript.cpp | 2008-08-14 00:08 | 5.2K | |
| EncapsulatedPostScript.hpp | 2008-08-14 00:08 | 1.0K | |
| FileDescription.cpp | 2008-08-14 00:08 | 2.4K | |
| FileDescription.hpp | 2008-08-14 00:08 | 1.0K | |
| FileDescription.o | 2012-04-19 23:41 | 6.3K | |
| InferenceEngine.hpp | 2008-08-14 00:08 | 10K | |
| InferenceEngine.ipp | 2008-08-14 00:08 | 178K | |
| InnerOptimizationWrapper.hpp | 2008-08-14 00:08 | 1.3K | |
| InnerOptimizationWrapper.ipp | 2008-08-14 00:08 | 1.5K | |
| InnerOptimizationWrapperBundleMethod.hpp | 2008-08-14 00:08 | 1.5K | |
| InnerOptimizationWrapperBundleMethod.ipp | 2008-08-14 00:08 | 3.9K | |
| InnerOptimizationWrapperLBFGS.hpp | 2008-08-14 00:08 | 1.4K | |
| InnerOptimizationWrapperLBFGS.ipp | 2008-08-14 00:08 | 4.4K | |
| InnerOptimizationWrapperSubgradientMethod.hpp | 2008-08-14 00:08 | 1.6K | |
| InnerOptimizationWrapperSubgradientMethod.ipp | 2008-08-14 00:08 | 4.5K | |
| InnerOptimizationWrapperViterbi.hpp | 2008-08-14 00:08 | 1.5K | |
| InnerOptimizationWrapperViterbi.ipp | 2008-08-14 00:08 | 4.0K | |
| LBFGS.hpp | 2008-08-14 00:08 | 1.9K | |
| LBFGS.ipp | 2008-08-14 00:08 | 6.6K | |
| LineSearch.hpp | 2008-08-14 00:08 | 2.7K | |
| LineSearch.ipp | 2008-08-14 00:08 | 5.9K | |
| LogSpace.hpp | 2008-08-14 00:08 | 14K | |
| MakeCoords.cpp | 2008-08-14 00:08 | 13K | |
| MakeCoords.hpp | 2008-08-14 00:08 | 2.6K | |
| MakeDefaults.pl | 2008-08-14 00:08 | 1.7K | |
| Makefile | 2008-08-14 00:08 | 3.7K | |
| OptimizationWrapper.hpp | 2008-08-14 00:08 | 2.0K | |
| OptimizationWrapper.ipp | 2008-08-14 00:08 | 13K | |
| Options.cpp | 2008-08-14 00:08 | 4.0K | |
| Options.hpp | 2008-08-14 00:08 | 1.1K | |
| Options.o | 2012-04-19 23:41 | 19K | |
| OuterOptimizationWrapper.hpp | 2008-08-14 00:08 | 1.5K | |
| OuterOptimizationWrapper.ipp | 2008-08-14 00:08 | 5.6K | |
| ParameterManager.hpp | 2008-08-14 00:08 | 4.3K | |
| ParameterManager.ipp | 2008-08-14 00:08 | 9.0K | |
| PlotRNA.cpp | 2008-08-14 00:08 | 16K | |
| SStruct.cpp | 2008-08-14 00:08 | 20K | |
| SStruct.hpp | 2008-08-14 00:08 | 3.2K | |
| SStruct.o | 2012-04-19 23:41 | 58K | |
| ScorePrediction.cpp | 2008-08-14 00:08 | 11K | |
| SparseMatrix.hpp | 2008-08-14 00:08 | 3.9K | |
| SparseMatrix.ipp | 2008-08-14 00:08 | 18K | |
| SubgradientMethod.hpp | 2008-08-14 00:08 | 1.8K | |
| SubgradientMethod.ipp | 2008-08-14 00:08 | 7.7K | |
| Utilities.cpp | 2008-08-14 00:08 | 12K | |
| Utilities.hpp | 2008-08-14 00:08 | 9.6K | |
| Utilities.ipp | 2008-08-14 00:08 | 17K | |
| contrafold.params.complementary | 2008-08-14 00:08 | 21K | |
| contrafold.params.noncomplementary | 2008-08-14 00:08 | 25K | |
| contrafold.params.profile | 2008-08-14 00:08 | 25K | |
| roc_area.pl | 2008-08-14 00:08 | 3.9K | |
| score_directory.pl | 2008-08-14 00:08 | 3.3K | |