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<head>
  <title>CompClust - Condition list, ordered by mean(PCEGHigh) - mean(PCEGLow)</title>
  <link rel="stylesheet" href="/compclust_css" type="text/css"
  	tal:attributes="href compclust_css" />
  <script language="JavaScript" type="text/javascript" src="/sorttable_js" tal:attributes="src sorttable_js"></script>
</head>
<body>
<span id="compclustMenu" tal:replace="structure menu"/>
<div id="compclustBody">
  <h1><a href="#instructions">Condition list, ordered by mean(PCEGHigh) - mean(PCEGLow)</a></h1>
<form action="" method="get">
  <p>
  <label for="pcNum">Choose component</label> 
  <select name="pcNum" id="pcNum">
    <option tal:repeat="pcNum pcNums" tal:content="pcNum/0"
            tal:attributes="selected pcNum/1">None</option>
  </select>
  </p>
  <p>Choose which annotations you would like to display in the extreme gene list.</p>
  <p>
  <div tal:repeat="cbi checkboxList" >
    <input type="checkbox" name="" id="" 
           tal:attributes="name cbi/id;id cbi/id;checked cbi/checked"/>
    <label for="" tal:attributes="for cbi/id" tal:content="cbi/label"></label><br/>
  </div>
  <input type="submit"/>
  </p>
</form>
<div id="compclustReport" tal:condition="report_head">
  <hr/>
  <h2>Extreme Gene List</h2>
  <table class="sortable" id="pcegList">
    <thead>
      <tr><td tal:content='heading' tal:repeat='heading report_head'></td></tr>
    </thead>
    <tbody>
      <tr tal:repeat='row report_body'>
        <td tal:content='cell' tal:repeat='cell row'></td>
      </tr>
    </tbody>
  </table>
  <p>report</p>
</div>
<hr/>
<h1><a name="instructions">Instructions</a></h1>
<p>
  Displays a list of conditions that show significantly different (e.g. 
  "up", or "down") expression when comparing the "high" data points to
  the "low" data points for a particular principal component. The conditions
  are ordered by the difference of the mean "high" data points and
  the mean "low" data points, in order to emphasize the conditions
  that most affect that principal component.
</p>
<p>
  Use the choose component to see which principal component you want to explore. 
  The format is principal component number - percent variance captured.
</p>
<p>
  The list of check boxes is used to select which annotation you would like to 
  see reported in your list.
</p>
</div>
</body>
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