/*========================================================================== SeqAn - The Library for Sequence Analysis http://www.seqan.de ============================================================================ Copyright (C) 2007 This library is free software; you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation; either version 3 of the License, or (at your option) any later version. This library is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. ==========================================================================*/ #ifndef SEQAN_HEADER_BASIC_GENERATED_FORWARDS_H #define SEQAN_HEADER_BASIC_GENERATED_FORWARDS_H ////////////////////////////////////////////////////////////////////////////// // NOTE: This file is automatically generated by build_forwards.py // Do not edit this file manually! ////////////////////////////////////////////////////////////////////////////// ////////////////////////////////////////////////////////////////////////////// // CLASSES ////////////////////////////////////////////////////////////////////////////// namespace SEQAN_NAMESPACE_MAIN { namespace debug { //____________________________________________________________________________ // Check class Check; // "projects/library/seqan/basic/basic_debug.h"(238) //____________________________________________________________________________ // Checkpoint struct Checkpoint; // "projects/library/seqan/basic/basic_debug.h"(296) //____________________________________________________________________________ // CheckpointLess struct CheckpointLess; // "projects/library/seqan/basic/basic_debug.h"(302) //____________________________________________________________________________ // CheckpointStore template struct CheckpointStore; // "projects/library/seqan/basic/basic_debug.h"(312) //____________________________________________________________________________ // Report class Report; // "projects/library/seqan/basic/basic_debug.h"(242) } //namespace debug } //namespace SEQAN_NAMESPACE_MAIN ////////////////////////////////////////////////////////////////////////////// namespace SEQAN_NAMESPACE_MAIN { //____________________________________________________________________________ // AdaptorIterator template struct AdaptorIterator; // "projects/library/seqan/basic/basic_iterator_adaptor.h"(31) //____________________________________________________________________________ // Allocator template struct Allocator; // "projects/library/seqan/basic/basic_allocator_interface.h"(50) //____________________________________________________________________________ // BitsPerValue template struct BitsPerValue; // "projects/library/seqan/basic/basic_alphabet_interface.h"(837) //____________________________________________________________________________ // CASE template struct CASE; // "projects/library/seqan/basic/basic_metaprogramming.h"(76) //____________________________________________________________________________ // Cargo template struct Cargo; // "projects/library/seqan/basic/basic_type.h"(290) //____________________________________________________________________________ // ChunkPool #if 0 template struct ChunkPool; // "projects/library/seqan/basic/basic_allocator_chunkpool.h"(56) #endif //____________________________________________________________________________ // ChunkPool2 template struct ChunkPool2; // "projects/library/seqan/basic/basic_allocator_chunkpool.h"(248) //____________________________________________________________________________ // CompareType template struct CompareType; // "projects/library/seqan/basic/basic_alphabet_simple.h"(500) template struct CompareType; // "projects/library/seqan/basic/basic_compare.h"(30) //____________________________________________________________________________ // Container template struct Container; // "projects/library/seqan/basic/basic_iterator_base.h"(106) template struct Container; // "projects/library/seqan/basic/basic_iterator.h"(147) //____________________________________________________________________________ // Convert template struct Convert; // "projects/library/seqan/basic/basic_converter.h"(48) //____________________________________________________________________________ // CountedPtr template struct CountedPtr; // "projects/library/seqan/basic/basic_counted_ptr.h"(34) //____________________________________________________________________________ // CutCompressed template struct CutCompressed; // "projects/library/seqan/basic/basic_aggregates.h"(36) //____________________________________________________________________________ // DeepestSpec template struct DeepestSpec; // "projects/library/seqan/basic/basic_type.h"(229) //____________________________________________________________________________ // DefaultGetIteratorSpec template struct DefaultGetIteratorSpec; // "projects/library/seqan/basic/basic_iterator.h"(94) //____________________________________________________________________________ // DefaultIteratorSpec template struct DefaultIteratorSpec; // "projects/library/seqan/basic/basic_iterator.h"(72) //____________________________________________________________________________ // Default_ struct Default_; // "projects/library/seqan/basic/basic_definition.h"(40) //____________________________________________________________________________ // Difference template struct Difference; // "projects/library/seqan/basic/basic_type.h"(137) //____________________________________________________________________________ // DotDrawing_ struct DotDrawing_; // "projects/library/seqan/basic/basic_tag.h"(36) //____________________________________________________________________________ // False struct False; // "projects/library/seqan/basic/basic_definition.h"(88) //____________________________________________________________________________ // GetValue template struct GetValue; // "projects/library/seqan/basic/basic_type.h"(69) //____________________________________________________________________________ // GoEnd_ struct GoEnd_; // "projects/library/seqan/basic/basic_definition.h"(66) //____________________________________________________________________________ // Gotoh_ struct Gotoh_; // "projects/library/seqan/basic/basic_tag.h"(90) //____________________________________________________________________________ // Hirschberg_ struct Hirschberg_; // "projects/library/seqan/basic/basic_tag.h"(118) //____________________________________________________________________________ // Holder template struct Holder; // "projects/library/seqan/basic/basic_holder.h"(112) //____________________________________________________________________________ // Host template struct Host; // "projects/library/seqan/basic/basic_type.h"(181) //____________________________________________________________________________ // IF template struct IF; // "projects/library/seqan/basic/basic_metaprogramming.h"(35) //____________________________________________________________________________ // Id template struct Id; // "projects/library/seqan/basic/basic_type.h"(335) //____________________________________________________________________________ // InfimumValue template struct InfimumValue; // "projects/library/seqan/basic/basic_alphabet_interface.h"(911) //____________________________________________________________________________ // IsSimple template struct IsSimple; // "projects/library/seqan/basic/basic_alphabet_interface.h"(53) //____________________________________________________________________________ // Iter template class Iter; // "projects/library/seqan/basic/basic_iterator_base.h"(41) //____________________________________________________________________________ // Iterator template struct Iterator; // "projects/library/seqan/basic/basic_iterator.h"(129) //____________________________________________________________________________ // IteratorProxy template struct IteratorProxy; // "projects/library/seqan/basic/basic_proxy.h"(80) //____________________________________________________________________________ // Iterator_Default_Imp template struct Iterator_Default_Imp; // "projects/library/seqan/basic/basic_iterator.h"(119) //____________________________________________________________________________ // Key template struct Key; // "projects/library/seqan/basic/basic_type.h"(358) //____________________________________________________________________________ // LENGTH template struct LENGTH; // "projects/library/seqan/basic/basic_type.h"(586) //____________________________________________________________________________ // LOOP template class LOOP; // "projects/library/seqan/basic/basic_metaprogramming.h"(121) //____________________________________________________________________________ // LOOP_REVERSE template class LOOP_REVERSE; // "projects/library/seqan/basic/basic_metaprogramming.h"(144) //____________________________________________________________________________ // Log2 template <__int64 numerus > struct Log2; // "projects/library/seqan/basic/basic_metaprogramming.h"(166) //____________________________________________________________________________ // Log2Floor template <__int64 numerus > struct Log2Floor; // "projects/library/seqan/basic/basic_metaprogramming.h"(171) //____________________________________________________________________________ // MemsetConstValueWorker template struct MemsetConstValueWorker; // "projects/library/seqan/basic/basic_metaprogramming.h"(251) //____________________________________________________________________________ // MemsetWorker template struct MemsetWorker; // "projects/library/seqan/basic/basic_metaprogramming.h"(205) //____________________________________________________________________________ // MinimalCtor_ struct MinimalCtor_; // "projects/library/seqan/basic/basic_definition.h"(73) //____________________________________________________________________________ // Move_ struct Move_; // "projects/library/seqan/basic/basic_definition.h"(60) //____________________________________________________________________________ // MultiPool template struct MultiPool; // "projects/library/seqan/basic/basic_allocator_multipool.h"(50) //____________________________________________________________________________ // MyersBitVector_ struct MyersBitVector_; // "projects/library/seqan/basic/basic_tag.h"(100) //____________________________________________________________________________ // MyersHirschberg_ struct MyersHirschberg_; // "projects/library/seqan/basic/basic_tag.h"(109) //____________________________________________________________________________ // NeedlemanWunsch_ struct NeedlemanWunsch_; // "projects/library/seqan/basic/basic_tag.h"(81) //____________________________________________________________________________ // NilCase struct NilCase; // "projects/library/seqan/basic/basic_metaprogramming.h"(72) //____________________________________________________________________________ // NonMinimalCtor_ struct NonMinimalCtor_; // "projects/library/seqan/basic/basic_definition.h"(77) //____________________________________________________________________________ // Nothing struct Nothing; // "projects/library/seqan/basic/basic_definition.h"(99) //____________________________________________________________________________ // Nussinov_ struct Nussinov_; // "projects/library/seqan/basic/basic_tag.h"(163) //____________________________________________________________________________ // Object template struct Object; // "projects/library/seqan/basic/basic_type.h"(377) //____________________________________________________________________________ // Pair template struct Pair; // "projects/library/seqan/basic/basic_aggregates.h"(69) //____________________________________________________________________________ // Position template struct Position; // "projects/library/seqan/basic/basic_type.h"(161) //____________________________________________________________________________ // PositionIterator struct PositionIterator; // "projects/library/seqan/basic/basic_iterator_position.h"(29) //____________________________________________________________________________ // Power template <__int64 base, __int64 exponent > struct Power; // "projects/library/seqan/basic/basic_metaprogramming.h"(186) //____________________________________________________________________________ // Proxy template struct Proxy; // "projects/library/seqan/basic/basic_transport.h"(67) template struct Proxy; // "projects/library/seqan/basic/basic_proxy.h"(48) //____________________________________________________________________________ // Reference template struct Reference; // "projects/library/seqan/basic/basic_type.h"(91) //____________________________________________________________________________ // SWITCH template class SWITCH; // "projects/library/seqan/basic/basic_metaprogramming.h"(84) //____________________________________________________________________________ // Simple struct Simple; // "projects/library/seqan/basic/basic_holder.h"(86) //____________________________________________________________________________ // SimpleAlloc template struct SimpleAlloc; // "projects/library/seqan/basic/basic_allocator_simple.h"(46) //____________________________________________________________________________ // SimpleIterator struct SimpleIterator; // "projects/library/seqan/basic/basic_iterator_simple.h"(30) //____________________________________________________________________________ // SimpleType template struct SimpleType; // "projects/library/seqan/basic/basic_alphabet_simple.h"(58) //____________________________________________________________________________ // SinglePool template struct SinglePool; // "projects/library/seqan/basic/basic_allocator_singlepool.h"(50) //____________________________________________________________________________ // SinglePool2 template struct SinglePool2; // "projects/library/seqan/basic/basic_allocator_singlepool.h"(226) //____________________________________________________________________________ // Size template struct Size; // "projects/library/seqan/basic/basic_type.h"(113) //____________________________________________________________________________ // SmithWatermanClump_ struct SmithWatermanClump_; // "projects/library/seqan/basic/basic_tag.h"(145) //____________________________________________________________________________ // SmithWatermanIsland_ struct SmithWatermanIsland_; // "projects/library/seqan/basic/basic_tag.h"(154) //____________________________________________________________________________ // SmithWaterman_ struct SmithWaterman_; // "projects/library/seqan/basic/basic_tag.h"(136) //____________________________________________________________________________ // Source template struct Source; // "projects/library/seqan/basic/basic_type.h"(392) //____________________________________________________________________________ // Spec template struct Spec; // "projects/library/seqan/basic/basic_type.h"(200) //____________________________________________________________________________ // StdAllocator template struct StdAllocator; // "projects/library/seqan/basic/basic_allocator_to_std.h"(166) //____________________________________________________________________________ // StdContainerIterator template struct StdContainerIterator; // "projects/library/seqan/basic/basic_iterator_adapt_std.h"(68) //____________________________________________________________________________ // StdIteratorAdaptor struct StdIteratorAdaptor; // "projects/library/seqan/basic/basic_iterator_adapt_std.h"(89) //____________________________________________________________________________ // SupremumValue template struct SupremumValue; // "projects/library/seqan/basic/basic_alphabet_interface.h"(900) //____________________________________________________________________________ // TYPECMP template struct TYPECMP; // "projects/library/seqan/basic/basic_metaprogramming.h"(54) //____________________________________________________________________________ // Tag template struct Tag; // "projects/library/seqan/basic/basic_definition.h"(31) //____________________________________________________________________________ // TagAllocateStorage_ struct TagAllocateStorage_; // "projects/library/seqan/basic/basic_allocator_interface.h"(84) //____________________________________________________________________________ // TagAllocateTemp_ struct TagAllocateTemp_; // "projects/library/seqan/basic/basic_allocator_interface.h"(81) //____________________________________________________________________________ // TagAllocateUnspecified_ struct TagAllocateUnspecified_; // "projects/library/seqan/basic/basic_allocator_interface.h"(78) //____________________________________________________________________________ // TagRooted_ struct TagRooted_; // "projects/library/seqan/basic/basic_iterator.h"(48) //____________________________________________________________________________ // TagStandard_ struct TagStandard_; // "projects/library/seqan/basic/basic_iterator.h"(51) //____________________________________________________________________________ // ToStdAllocator template struct ToStdAllocator; // "projects/library/seqan/basic/basic_allocator_to_std.h"(61) //____________________________________________________________________________ // Triple template struct Triple; // "projects/library/seqan/basic/basic_aggregates.h"(218) //____________________________________________________________________________ // Tristate struct Tristate; // "projects/library/seqan/basic/basic_holder.h"(87) //____________________________________________________________________________ // Tristate2 struct Tristate2; // "projects/library/seqan/basic/basic_holder.h"(790) //____________________________________________________________________________ // True struct True; // "projects/library/seqan/basic/basic_definition.h"(87) //____________________________________________________________________________ // Tuple template struct Tuple; // "projects/library/seqan/basic/basic_aggregates.h"(313) //____________________________________________________________________________ // Value template struct Value; // "projects/library/seqan/basic/basic_type.h"(43) //____________________________________________________________________________ // ValueSize template struct ValueSize; // "projects/library/seqan/basic/basic_alphabet_interface.h"(859) //____________________________________________________________________________ // VertexDescriptor template struct VertexDescriptor; // "projects/library/seqan/basic/basic_type.h"(313) //____________________________________________________________________________ // VolatilePtr template struct VolatilePtr; // "projects/library/seqan/basic/basic_volatile_ptr.h"(40) //____________________________________________________________________________ // WEIGHT template struct WEIGHT; // "projects/library/seqan/basic/basic_type.h"(608) //____________________________________________________________________________ // WorkerNothing struct WorkerNothing; // "projects/library/seqan/basic/basic_metaprogramming.h"(115) //____________________________________________________________________________ // _AminoAcid struct _AminoAcid; // "projects/library/seqan/basic/basic_alphabet_simple.h"(1085) //____________________________________________________________________________ // _BitVector template struct _BitVector; // "projects/library/seqan/basic/basic_aggregates.h"(340) //____________________________________________________________________________ // _ClassIdentifier template struct _ClassIdentifier; // "projects/library/seqan/basic/basic_definition.h"(269) //____________________________________________________________________________ // _Compressed struct _Compressed; // "projects/library/seqan/basic/basic_aggregates.h"(29) //____________________________________________________________________________ // _ConstParameter template struct _ConstParameter; // "projects/library/seqan/basic/basic_type.h"(474) //____________________________________________________________________________ // _CopyConst template struct _CopyConst; // "projects/library/seqan/basic/basic_definition.h"(108) //____________________________________________________________________________ // _Dna struct _Dna; // "projects/library/seqan/basic/basic_alphabet_simple.h"(1010) //____________________________________________________________________________ // _Dna5 struct _Dna5; // "projects/library/seqan/basic/basic_alphabet_simple.h"(1034) //____________________________________________________________________________ // _HammingDistance struct _HammingDistance; // "projects/library/seqan/basic/basic_tag.h"(50) //____________________________________________________________________________ // _InfimumValueSigned template struct _InfimumValueSigned; // "projects/library/seqan/basic/basic_alphabet_interface.h"(876) //____________________________________________________________________________ // _InfimumValueUnsigned template struct _InfimumValueUnsigned; // "projects/library/seqan/basic/basic_alphabet_interface.h"(874) //____________________________________________________________________________ // _IsSameType template struct _IsSameType; // "projects/library/seqan/basic/basic_definition.h"(378) //____________________________________________________________________________ // _IsSimple template struct _IsSimple; // "projects/library/seqan/basic/basic_alphabet_interface.h"(47) //____________________________________________________________________________ // _Iupac struct _Iupac; // "projects/library/seqan/basic/basic_alphabet_simple.h"(1058) //____________________________________________________________________________ // _LevenshteinDistance struct _LevenshteinDistance; // "projects/library/seqan/basic/basic_tag.h"(51) //____________________________________________________________________________ // _Log2_Impl template struct _Log2_Impl; // "projects/library/seqan/basic/basic_definition.h"(292) //____________________________________________________________________________ // _MakeSigned template struct _MakeSigned; // "projects/library/seqan/basic/basic_definition.h"(212) //____________________________________________________________________________ // _MakeUnsigned template struct _MakeUnsigned; // "projects/library/seqan/basic/basic_definition.h"(157) //____________________________________________________________________________ // _Parameter template struct _Parameter; // "projects/library/seqan/basic/basic_type.h"(416) //____________________________________________________________________________ // _Pointer template struct _Pointer; // "projects/library/seqan/basic/basic_type.h"(519) //____________________________________________________________________________ // _RemoveConst template struct _RemoveConst; // "projects/library/seqan/basic/basic_definition.h"(126) //____________________________________________________________________________ // _SupremumValueSigned template struct _SupremumValueSigned; // "projects/library/seqan/basic/basic_alphabet_interface.h"(871) //____________________________________________________________________________ // _SupremumValueUnsigned template struct _SupremumValueUnsigned; // "projects/library/seqan/basic/basic_alphabet_interface.h"(869) //____________________________________________________________________________ // _Translate_Table_AA_2_Ascii template struct _Translate_Table_AA_2_Ascii; // "projects/library/seqan/basic/basic_alphabet_simple_tabs.h"(337) //____________________________________________________________________________ // _Translate_Table_Ascii_2_AA template struct _Translate_Table_Ascii_2_AA; // "projects/library/seqan/basic/basic_alphabet_simple_tabs.h"(374) //____________________________________________________________________________ // _Translate_Table_Ascii_2_Dna template struct _Translate_Table_Ascii_2_Dna; // "projects/library/seqan/basic/basic_alphabet_simple_tabs.h"(138) //____________________________________________________________________________ // _Translate_Table_Ascii_2_Dna5 template struct _Translate_Table_Ascii_2_Dna5; // "projects/library/seqan/basic/basic_alphabet_simple_tabs.h"(176) //____________________________________________________________________________ // _Translate_Table_Ascii_2_Iupac template struct _Translate_Table_Ascii_2_Iupac; // "projects/library/seqan/basic/basic_alphabet_simple_tabs.h"(214) //____________________________________________________________________________ // _Translate_Table_Byte_2_AA template struct _Translate_Table_Byte_2_AA; // "projects/library/seqan/basic/basic_alphabet_simple_tabs.h"(412) //____________________________________________________________________________ // _Translate_Table_Byte_2_Dna template struct _Translate_Table_Byte_2_Dna; // "projects/library/seqan/basic/basic_alphabet_simple_tabs.h"(251) //____________________________________________________________________________ // _Translate_Table_Byte_2_Dna5 template struct _Translate_Table_Byte_2_Dna5; // "projects/library/seqan/basic/basic_alphabet_simple_tabs.h"(280) //____________________________________________________________________________ // _Translate_Table_Byte_2_Iupac template struct _Translate_Table_Byte_2_Iupac; // "projects/library/seqan/basic/basic_alphabet_simple_tabs.h"(308) //____________________________________________________________________________ // _Translate_Table_Dna5_2_Ascii template struct _Translate_Table_Dna5_2_Ascii; // "projects/library/seqan/basic/basic_alphabet_simple_tabs.h"(33) //____________________________________________________________________________ // _Translate_Table_Dna5_2_Iupac template struct _Translate_Table_Dna5_2_Iupac; // "projects/library/seqan/basic/basic_alphabet_simple_tabs.h"(43) //____________________________________________________________________________ // _Translate_Table_Iupac_2_Ascii template struct _Translate_Table_Iupac_2_Ascii; // "projects/library/seqan/basic/basic_alphabet_simple_tabs.h"(53) //____________________________________________________________________________ // _Translate_Table_Iupac_2_Dna template struct _Translate_Table_Iupac_2_Dna; // "projects/library/seqan/basic/basic_alphabet_simple_tabs.h"(81) //____________________________________________________________________________ // _Translate_Table_Iupac_2_Dna5 template struct _Translate_Table_Iupac_2_Dna5; // "projects/library/seqan/basic/basic_alphabet_simple_tabs.h"(110) //____________________________________________________________________________ // _TupleShiftLeftWorker struct _TupleShiftLeftWorker; // "projects/library/seqan/basic/basic_aggregates.h"(510) //____________________________________________________________________________ // _TupleShiftRightWorker struct _TupleShiftRightWorker; // "projects/library/seqan/basic/basic_aggregates.h"(517) //____________________________________________________________________________ // _ValueConstructor struct _ValueConstructor; // "projects/library/seqan/basic/basic_alphabet_interface.h"(81) //____________________________________________________________________________ // _ValueConstructorProxy struct _ValueConstructorProxy; // "projects/library/seqan/basic/basic_alphabet_interface.h"(111) //____________________________________________________________________________ // _ValueDestructor struct _ValueDestructor; // "projects/library/seqan/basic/basic_alphabet_interface.h"(125) //____________________________________________________________________________ // _ValueDestructorProxy struct _ValueDestructorProxy; // "projects/library/seqan/basic/basic_alphabet_interface.h"(135) } //namespace SEQAN_NAMESPACE_MAIN ////////////////////////////////////////////////////////////////////////////// // TYPEDEFS ////////////////////////////////////////////////////////////////////////////// namespace SEQAN_NAMESPACE_MAIN { //____________________________________________________________________________ // AminoAcid typedef SimpleType AminoAcid; // "projects/library/seqan/basic/basic_alphabet_simple.h"(1086) //____________________________________________________________________________ // Ascii typedef char Ascii; // "projects/library/seqan/basic/basic_alphabet_interface.h"(61) //____________________________________________________________________________ // Byte typedef unsigned char Byte; // "projects/library/seqan/basic/basic_alphabet_interface.h"(62) //____________________________________________________________________________ // Compressed typedef Tag<_Compressed> Compressed; // "projects/library/seqan/basic/basic_aggregates.h"(30) //____________________________________________________________________________ // Default typedef Tag const Default; // "projects/library/seqan/basic/basic_definition.h"(41) //____________________________________________________________________________ // Dna typedef SimpleType Dna; // "projects/library/seqan/basic/basic_alphabet_simple.h"(1011) //____________________________________________________________________________ // Dna5 typedef SimpleType Dna5; // "projects/library/seqan/basic/basic_alphabet_simple.h"(1035) //____________________________________________________________________________ // DotDrawing typedef Tag const DotDrawing; // "projects/library/seqan/basic/basic_tag.h"(37) //____________________________________________________________________________ // EditDistance typedef Tag<_LevenshteinDistance> EditDistance; // "projects/library/seqan/basic/basic_tag.h"(55) //____________________________________________________________________________ // GoEnd typedef Tag const GoEnd; // "projects/library/seqan/basic/basic_definition.h"(67) //____________________________________________________________________________ // Gotoh typedef Tag const Gotoh; // "projects/library/seqan/basic/basic_tag.h"(91) //____________________________________________________________________________ // HammingDistance typedef Tag<_HammingDistance> HammingDistance; // "projects/library/seqan/basic/basic_tag.h"(53) //____________________________________________________________________________ // Hirschberg typedef Tag const Hirschberg; // "projects/library/seqan/basic/basic_tag.h"(119) //____________________________________________________________________________ // Iupac typedef SimpleType Iupac; // "projects/library/seqan/basic/basic_alphabet_simple.h"(1059) //____________________________________________________________________________ // LevenshteinDistance typedef Tag<_LevenshteinDistance> LevenshteinDistance; // "projects/library/seqan/basic/basic_tag.h"(54) //____________________________________________________________________________ // MinimalCtor typedef Tag const MinimalCtor; // "projects/library/seqan/basic/basic_definition.h"(74) //____________________________________________________________________________ // Move typedef Tag const Move; // "projects/library/seqan/basic/basic_definition.h"(61) //____________________________________________________________________________ // MyersBitVector typedef Tag const MyersBitVector; // "projects/library/seqan/basic/basic_tag.h"(101) //____________________________________________________________________________ // MyersHirschberg typedef Tag const MyersHirschberg; // "projects/library/seqan/basic/basic_tag.h"(110) //____________________________________________________________________________ // NeedlemanWunsch typedef Tag const NeedlemanWunsch; // "projects/library/seqan/basic/basic_tag.h"(82) //____________________________________________________________________________ // NonMinimalCtor typedef Tag const NonMinimalCtor; // "projects/library/seqan/basic/basic_definition.h"(78) //____________________________________________________________________________ // Nussinov typedef Tag const Nussinov; // "projects/library/seqan/basic/basic_tag.h"(164) //____________________________________________________________________________ // PoolAllocator typedef Allocator >, 0x100> > PoolAllocator; // "projects/library/seqan/basic/basic_allocator_multipool.h"(54) //____________________________________________________________________________ // Rooted typedef Tag const Rooted; // "projects/library/seqan/basic/basic_iterator.h"(49) //____________________________________________________________________________ // SimpleAllocator typedef Allocator > SimpleAllocator; // "projects/library/seqan/basic/basic_allocator_simple.h"(51) //____________________________________________________________________________ // SmithWaterman typedef Tag const SmithWaterman; // "projects/library/seqan/basic/basic_tag.h"(137) //____________________________________________________________________________ // SmithWatermanClump typedef Tag const SmithWatermanClump; // "projects/library/seqan/basic/basic_tag.h"(146) //____________________________________________________________________________ // SmithWatermanIsland typedef Tag const SmithWatermanIsland; // "projects/library/seqan/basic/basic_tag.h"(155) //____________________________________________________________________________ // Standard typedef Tag const Standard; // "projects/library/seqan/basic/basic_iterator.h"(52) //____________________________________________________________________________ // TagAllocateStorage typedef Tag const TagAllocateStorage; // "projects/library/seqan/basic/basic_allocator_interface.h"(85) //____________________________________________________________________________ // TagAllocateTemp typedef Tag const TagAllocateTemp; // "projects/library/seqan/basic/basic_allocator_interface.h"(82) //____________________________________________________________________________ // TagAllocateUnspecified typedef Tag const TagAllocateUnspecified; // "projects/library/seqan/basic/basic_allocator_interface.h"(79) //____________________________________________________________________________ // Unicode typedef wchar_t Unicode; // "projects/library/seqan/basic/basic_alphabet_interface.h"(63) } //namespace SEQAN_NAMESPACE_MAIN ////////////////////////////////////////////////////////////////////////////// // FUNCTIONS ////////////////////////////////////////////////////////////////////////////// namespace SEQAN_NAMESPACE_MAIN { namespace debug { //____________________________________________________________________________ // Error template void Error(const char * file, int line, const char * comment); // "projects/library/seqan/basic/basic_debug.h"(250) //____________________________________________________________________________ // Message template void Message(const char * file, int line, const char * comment); // "projects/library/seqan/basic/basic_debug.h"(260) //____________________________________________________________________________ // Result template void Result(const char * file, int line, const char * comment); // "projects/library/seqan/basic/basic_debug.h"(269) //____________________________________________________________________________ // checkpoint inline bool checkpoint(unsigned int line, char const* file); // "projects/library/seqan/basic/basic_debug.h"(321) //____________________________________________________________________________ // testCheckpoint inline void testCheckpoint(char const* file, unsigned int line); // "projects/library/seqan/basic/basic_debug.h"(338) //____________________________________________________________________________ // verifyCheckpoints inline void verifyCheckpoints(char const* file); // "projects/library/seqan/basic/basic_debug.h"(346) } //namespace debug } //namespace SEQAN_NAMESPACE_MAIN ////////////////////////////////////////////////////////////////////////////// namespace SEQAN_NAMESPACE_MAIN { //____________________________________________________________________________ // _allocatorBlockNumber template inline unsigned int _allocatorBlockNumber(Allocator > &, size_t size_); // "projects/library/seqan/basic/basic_allocator_multipool.h"(140) //____________________________________________________________________________ // _arrayClearSpace_Default template void _arrayClearSpace_Default(TIterator array_begin, size_t array_length, size_t keep_from, size_t move_to); // "projects/library/seqan/basic/basic_alphabet_interface.h"(774) //____________________________________________________________________________ // _arrayClearSpace_Pointer template inline void _arrayClearSpace_Pointer(TValue * array_begin, size_t array_length, size_t keep_from, size_t move_to, True); // "projects/library/seqan/basic/basic_alphabet_trait_basic.h"(342) template inline void _arrayClearSpace_Pointer(TValue * array_begin, size_t array_length, size_t keep_from, size_t move_to, False); // "projects/library/seqan/basic/basic_alphabet_trait_basic.h"(354) //____________________________________________________________________________ // _arrayConstructCopy_Default template inline void _arrayConstructCopy_Default(TSource1 source_begin, TSource2 source_end, TTarget target_begin); // "projects/library/seqan/basic/basic_alphabet_interface.h"(349) //____________________________________________________________________________ // _arrayConstructCopy_Pointer template inline void _arrayConstructCopy_Pointer(TValue * source_begin, TValue * source_end, TValue * target_begin, True); // "projects/library/seqan/basic/basic_alphabet_trait_basic.h"(100) template inline void _arrayConstructCopy_Pointer(TValue * source_begin, TValue * source_end, TValue * target_begin, False); // "projects/library/seqan/basic/basic_alphabet_trait_basic.h"(110) //____________________________________________________________________________ // _arrayConstructMove_Default template inline void _arrayConstructMove_Default(TSource1 source_begin, TSource2 source_end, TTarget target_begin); // "projects/library/seqan/basic/basic_alphabet_interface.h"(397) //____________________________________________________________________________ // _arrayConstructMove_Pointer template inline void _arrayConstructMove_Pointer(TValue * source_begin, TValue * source_end, TValue * target_begin, True); // "projects/library/seqan/basic/basic_alphabet_trait_basic.h"(134) template inline void _arrayConstructMove_Pointer(TValue * source_begin, TValue * source_end, TValue * target_begin, False); // "projects/library/seqan/basic/basic_alphabet_trait_basic.h"(144) //____________________________________________________________________________ // _arrayConstruct_Default template inline void _arrayConstruct_Default(TIterator1 begin_, TIterator2 end_); // "projects/library/seqan/basic/basic_alphabet_interface.h"(280) template inline void _arrayConstruct_Default(TIterator1 begin_, TIterator2 end_, TParam const & param_); // "projects/library/seqan/basic/basic_alphabet_interface.h"(304) //____________________________________________________________________________ // _arrayConstruct_Pointer template inline void _arrayConstruct_Pointer(TIterator, TIterator, True); // "projects/library/seqan/basic/basic_alphabet_trait_basic.h"(36) template inline void _arrayConstruct_Pointer(TIterator begin_, TIterator end_, False); // "projects/library/seqan/basic/basic_alphabet_trait_basic.h"(45) template inline void _arrayConstruct_Pointer(TIterator begin_, TIterator end_, TParam const & param_, True); // "projects/library/seqan/basic/basic_alphabet_trait_basic.h"(66) template inline void _arrayConstruct_Pointer(TIterator begin_, TIterator end_, TParam const & param_, False); // "projects/library/seqan/basic/basic_alphabet_trait_basic.h"(76) //____________________________________________________________________________ // _arrayCopyBackward_Default template inline void _arrayCopyBackward_Default(TSource1 source_begin, TSource2 source_end, TTarget target_begin); // "projects/library/seqan/basic/basic_alphabet_interface.h"(547) //____________________________________________________________________________ // _arrayCopyBackward_Pointer template inline void _arrayCopyBackward_Pointer(TValue * source_begin, TValue * source_end, TValue * target_begin, True); // "projects/library/seqan/basic/basic_alphabet_trait_basic.h"(239) template inline void _arrayCopyBackward_Pointer(TValue * source_begin, TValue * source_end, TValue * target_begin, False); // "projects/library/seqan/basic/basic_alphabet_trait_basic.h"(249) //____________________________________________________________________________ // _arrayCopyForward_Default template inline void _arrayCopyForward_Default(TSource1 source_begin, TSource2 source_end, TTarget target_begin); // "projects/library/seqan/basic/basic_alphabet_interface.h"(504) //____________________________________________________________________________ // _arrayCopyForward_Pointer template inline void _arrayCopyForward_Pointer(TValue * source_begin, TValue * source_end, TValue * target_begin, True); // "projects/library/seqan/basic/basic_alphabet_trait_basic.h"(205) template inline void _arrayCopyForward_Pointer(TValue * source_begin, TValue * source_end, TValue * target_begin, False); // "projects/library/seqan/basic/basic_alphabet_trait_basic.h"(215) //____________________________________________________________________________ // _arrayDestruct_Default template inline void _arrayDestruct_Default(TIterator1 begin_, TIterator2 end_); // "projects/library/seqan/basic/basic_alphabet_interface.h"(436) //____________________________________________________________________________ // _arrayDestruct_Pointer template inline void _arrayDestruct_Pointer(TValue * , TValue * , True); // "projects/library/seqan/basic/basic_alphabet_trait_basic.h"(167) template inline void _arrayDestruct_Pointer(TValue * begin_, TValue * end_, False); // "projects/library/seqan/basic/basic_alphabet_trait_basic.h"(176) //____________________________________________________________________________ // _arrayMoveBackward_Default template inline void _arrayMoveBackward_Default(TSource1 source_begin, TSource2 source_end, TTarget target_begin); // "projects/library/seqan/basic/basic_alphabet_interface.h"(679) //____________________________________________________________________________ // _arrayMoveBackward_Pointer template inline void _arrayMoveBackward_Pointer(TValue * source_begin, TValue * source_end, TValue * target_begin, True); // "projects/library/seqan/basic/basic_alphabet_trait_basic.h"(307) template inline void _arrayMoveBackward_Pointer(TValue * source_begin, TValue * source_end, TValue * target_begin, False); // "projects/library/seqan/basic/basic_alphabet_trait_basic.h"(317) //____________________________________________________________________________ // _arrayMoveForward_Default template inline void _arrayMoveForward_Default(TSource1 source_begin, TSource2 source_end, TTarget target_begin); // "projects/library/seqan/basic/basic_alphabet_interface.h"(630) //____________________________________________________________________________ // _arrayMoveForward_Pointer template inline void _arrayMoveForward_Pointer(TValue * source_begin, TValue * source_end, TValue * target_begin, True); // "projects/library/seqan/basic/basic_alphabet_trait_basic.h"(273) template inline void _arrayMoveForward_Pointer(TValue * source_begin, TValue * source_end, TValue * target_begin, False); // "projects/library/seqan/basic/basic_alphabet_trait_basic.h"(283) //____________________________________________________________________________ // _intPow template inline TValue _intPow(TValue a, TExponent b); // "projects/library/seqan/basic/basic_definition.h"(334) //____________________________________________________________________________ // _isSameType template inline bool _isSameType(); // "projects/library/seqan/basic/basic_definition.h"(393) //____________________________________________________________________________ // _max template inline const _Ty& _max(const _Ty& _Left, const _Ty& _Right); // "projects/library/seqan/basic/basic_definition.h"(367) //____________________________________________________________________________ // _min template inline const _Tx& _min(const _Tx& _Left, const _Tx& _Right); // "projects/library/seqan/basic/basic_definition.h"(352) template inline _Tx _min(const _Tx& _Left, const _Ty& _Right); // "projects/library/seqan/basic/basic_definition.h"(361) //____________________________________________________________________________ // _toParameter template typename _Parameter::Type _toParameter(T * _object); // "projects/library/seqan/basic/basic_type.h"(447) template typename _Parameter::Type _toParameter(T _object); // "projects/library/seqan/basic/basic_type.h"(454) //____________________________________________________________________________ // _toPointer template typename _Pointer::Type _toPointer(T & _object); // "projects/library/seqan/basic/basic_type.h"(553) template typename _Pointer::Type _toPointer(T const & _object); // "projects/library/seqan/basic/basic_type.h"(560) template typename _Pointer::Type _toPointer(T * _object); // "projects/library/seqan/basic/basic_type.h"(568) //____________________________________________________________________________ // addRef template inline void addRef(T & ); // "projects/library/seqan/basic/basic_holder.h"(45) template inline void addRef(T const & ); // "projects/library/seqan/basic/basic_holder.h"(51) //____________________________________________________________________________ // allocate template inline void allocate(Allocator > & me, TValue * & data, TSize count, Tag const tag_); // "projects/library/seqan/basic/basic_allocator_singlepool.h"(162) template inline void allocate(Allocator > & me, TValue2 * & data, TSize count, Tag const tag_); // "projects/library/seqan/basic/basic_allocator_singlepool.h"(279) template inline void allocate(Allocator > & me, TValue * & data, TSize count, Tag const tag_); // "projects/library/seqan/basic/basic_allocator_multipool.h"(165) template inline void allocate(Allocator > & me, TValue * & data, TSize count, Tag const); // "projects/library/seqan/basic/basic_allocator_simple.h"(146) template inline void allocate(T const & me, TValue * & data, TSize count); // "projects/library/seqan/basic/basic_allocator_interface.h"(129) template inline void allocate(T & me, TValue * & data, TSize count); // "projects/library/seqan/basic/basic_allocator_interface.h"(137) template inline void allocate(T const &, TValue * & data, TSize count, Tag const); // "projects/library/seqan/basic/basic_allocator_interface.h"(147) template inline void allocate(T &, TValue * & data, TSize count, Tag const); // "projects/library/seqan/basic/basic_allocator_interface.h"(158) //template inline void allocate(Allocator > & me, TValue * & data, TSize count, Tag const tag_); // "projects/library/seqan/basic/basic_allocator_chunkpool.h"(173) template inline void allocate(Allocator > & me, TValue2 * & data, TSize count, Tag const tag_); // "projects/library/seqan/basic/basic_allocator_chunkpool.h"(302) //____________________________________________________________________________ // arrayClearSpace template void arrayClearSpace(TIterator array_begin, size_t array_length, size_t keep_from, size_t move_to); // "projects/library/seqan/basic/basic_alphabet_interface.h"(818) template void arrayClearSpace(TValue * array_begin, size_t array_length, size_t keep_from, size_t move_to); // "projects/library/seqan/basic/basic_alphabet_trait_basic.h"(362) //____________________________________________________________________________ // arrayConstruct template inline void arrayConstruct(TIterator1 begin_, TIterator2 end_); // "projects/library/seqan/basic/basic_alphabet_interface.h"(292) template inline void arrayConstruct(TIterator1 begin_, TIterator2 end_, TParam const & param_); // "projects/library/seqan/basic/basic_alphabet_interface.h"(317) template inline void arrayConstruct(TValue * begin_, TValue * end_); // "projects/library/seqan/basic/basic_alphabet_trait_basic.h"(53) template inline void arrayConstruct(TValue * begin_, TValue * end_, TParam const & param_); // "projects/library/seqan/basic/basic_alphabet_trait_basic.h"(85) //____________________________________________________________________________ // arrayConstructCopy template inline void arrayConstructCopy(TSource1 source_begin, TSource2 source_end, TTarget target_begin); // "projects/library/seqan/basic/basic_alphabet_interface.h"(364) template inline void arrayConstructCopy(TValue * source_begin, TValue * source_end, TValue * target_begin); // "projects/library/seqan/basic/basic_alphabet_trait_basic.h"(119) //____________________________________________________________________________ // arrayConstructMove template inline void arrayConstructMove(TSource1 source_begin, TSource2 source_end, TTarget target_begin); // "projects/library/seqan/basic/basic_alphabet_interface.h"(412) template inline void arrayConstructMove(TValue * source_begin, TValue * source_end, TValue * target_begin); // "projects/library/seqan/basic/basic_alphabet_trait_basic.h"(153) //____________________________________________________________________________ // arrayCopy template inline void arrayCopy(TSource1 source_begin, TSource2 source_end, TTarget target_begin); // "projects/library/seqan/basic/basic_alphabet_interface.h"(591) //____________________________________________________________________________ // arrayCopyBackward template inline void arrayCopyBackward(TSource1 source_begin, TSource2 source_end, TTarget target_begin); // "projects/library/seqan/basic/basic_alphabet_interface.h"(556) template inline void arrayCopyBackward(TValue * source_begin, TValue * source_end, TValue * target_begin); // "projects/library/seqan/basic/basic_alphabet_trait_basic.h"(258) //____________________________________________________________________________ // arrayCopyForward template inline void arrayCopyForward(TSource1 source_begin, TSource2 source_end, TTarget target_begin); // "projects/library/seqan/basic/basic_alphabet_interface.h"(513) template inline void arrayCopyForward(TValue * source_begin, TValue * source_end, TValue * target_begin); // "projects/library/seqan/basic/basic_alphabet_trait_basic.h"(224) //____________________________________________________________________________ // arrayDestruct template inline void arrayDestruct(TIterator1 begin_, TIterator2 end_); // "projects/library/seqan/basic/basic_alphabet_interface.h"(448) template inline void arrayDestruct(TValue * begin_, TValue * end_); // "projects/library/seqan/basic/basic_alphabet_trait_basic.h"(184) //____________________________________________________________________________ // arrayFill template inline void arrayFill(TIterator1 begin_, TIterator2 end_, TValue const & value); // "projects/library/seqan/basic/basic_alphabet_interface.h"(474) //____________________________________________________________________________ // arrayMove template inline void arrayMove(TSource1 source_begin, TSource2 source_end, TTarget target_begin); // "projects/library/seqan/basic/basic_alphabet_interface.h"(732) //____________________________________________________________________________ // arrayMoveBackward template inline void arrayMoveBackward(TSource1 source_begin, TSource2 source_end, TTarget target_begin); // "projects/library/seqan/basic/basic_alphabet_interface.h"(694) template inline void arrayMoveBackward(TValue * source_begin, TValue * source_end, TValue * target_begin); // "projects/library/seqan/basic/basic_alphabet_trait_basic.h"(326) //____________________________________________________________________________ // arrayMoveForward template inline void arrayMoveForward(TSource1 source_begin, TSource2 source_end, TTarget target_begin); // "projects/library/seqan/basic/basic_alphabet_interface.h"(644) template inline void arrayMoveForward(TValue * source_begin, TValue * source_end, TValue * target_begin); // "projects/library/seqan/basic/basic_alphabet_trait_basic.h"(292) //____________________________________________________________________________ // assign template inline void assign(SimpleType & target, SimpleType & source); // "projects/library/seqan/basic/basic_alphabet_simple.h"(294) template inline void assign(SimpleType & target, SimpleType const & source); // "projects/library/seqan/basic/basic_alphabet_simple.h"(302) template inline void assign(SimpleType & target, TSource & source); // "projects/library/seqan/basic/basic_alphabet_simple.h"(313) template inline void assign(SimpleType & target, TSource const & source); // "projects/library/seqan/basic/basic_alphabet_simple.h"(321) template inline void assign(SimpleType & target, Proxy & source); // "projects/library/seqan/basic/basic_alphabet_simple.h"(334) template inline void assign(SimpleType & target, Proxy const & source); // "projects/library/seqan/basic/basic_alphabet_simple.h"(343) template inline void assign(int & c_target, SimpleType & source); // "projects/library/seqan/basic/basic_alphabet_simple.h"(358) template inline void assign(int & c_target, SimpleType const & source); // "projects/library/seqan/basic/basic_alphabet_simple.h"(366) template inline void assign(unsigned int & c_target, SimpleType & source); // "projects/library/seqan/basic/basic_alphabet_simple.h"(376) template inline void assign(unsigned int & c_target, SimpleType const & source); // "projects/library/seqan/basic/basic_alphabet_simple.h"(384) template inline void assign(short & c_target, SimpleType & source); // "projects/library/seqan/basic/basic_alphabet_simple.h"(394) template inline void assign(short & c_target, SimpleType const & source); // "projects/library/seqan/basic/basic_alphabet_simple.h"(402) template inline void assign(unsigned short & c_target, SimpleType & source); // "projects/library/seqan/basic/basic_alphabet_simple.h"(412) template inline void assign(unsigned short & c_target, SimpleType const & source); // "projects/library/seqan/basic/basic_alphabet_simple.h"(420) template inline void assign(char & c_target, SimpleType & source); // "projects/library/seqan/basic/basic_alphabet_simple.h"(430) template inline void assign(char & c_target, SimpleType const & source); // "projects/library/seqan/basic/basic_alphabet_simple.h"(438) template inline void assign(signed char & c_target, SimpleType & source); // "projects/library/seqan/basic/basic_alphabet_simple.h"(448) template inline void assign(signed char & c_target, SimpleType const & source); // "projects/library/seqan/basic/basic_alphabet_simple.h"(456) template inline void assign(unsigned char & c_target, SimpleType & source); // "projects/library/seqan/basic/basic_alphabet_simple.h"(466) template inline void assign(unsigned char & c_target, SimpleType const & source); // "projects/library/seqan/basic/basic_alphabet_simple.h"(474) inline void assign(Ascii & c_target, Dna const & source); // "projects/library/seqan/basic/basic_alphabet_simple.h"(1096) inline void assign(Ascii & c_target, Dna5 const & source); // "projects/library/seqan/basic/basic_alphabet_simple.h"(1104) inline void assign(Ascii & c_target, Iupac const & source); // "projects/library/seqan/basic/basic_alphabet_simple.h"(1111) inline void assign(Ascii & c_target, AminoAcid const & source); // "projects/library/seqan/basic/basic_alphabet_simple.h"(1118) inline void assign(Dna & target, Byte c_source); // "projects/library/seqan/basic/basic_alphabet_simple.h"(1129) inline void assign(Dna & target, Ascii c_source); // "projects/library/seqan/basic/basic_alphabet_simple.h"(1138) inline void assign(Dna & target, Unicode c_source); // "projects/library/seqan/basic/basic_alphabet_simple.h"(1147) inline void assign(Dna & target, Dna5 const & c_source); // "projects/library/seqan/basic/basic_alphabet_simple.h"(1156) inline void assign(Dna & target, Iupac const & source); // "projects/library/seqan/basic/basic_alphabet_simple.h"(1165) inline void assign(Dna5 & target, Byte c_source); // "projects/library/seqan/basic/basic_alphabet_simple.h"(1176) inline void assign(Dna5 & target, Ascii c_source); // "projects/library/seqan/basic/basic_alphabet_simple.h"(1185) inline void assign(Dna5 & target, Unicode c_source); // "projects/library/seqan/basic/basic_alphabet_simple.h"(1194) inline void assign(Dna5 & target, Iupac const & source); // "projects/library/seqan/basic/basic_alphabet_simple.h"(1203) inline void assign(Dna5 & target, Dna const & c_source); // "projects/library/seqan/basic/basic_alphabet_simple.h"(1213) inline void assign(Iupac & target, Byte c_source); // "projects/library/seqan/basic/basic_alphabet_simple.h"(1224) inline void assign(Iupac & target, Ascii c_source); // "projects/library/seqan/basic/basic_alphabet_simple.h"(1233) inline void assign(Iupac & target, Unicode c_source); // "projects/library/seqan/basic/basic_alphabet_simple.h"(1242) inline void assign(Iupac & target, Dna const & source); // "projects/library/seqan/basic/basic_alphabet_simple.h"(1249) inline void assign(Iupac & target, Dna5 const & source); // "projects/library/seqan/basic/basic_alphabet_simple.h"(1256) inline void assign(AminoAcid & target, Byte c_source); // "projects/library/seqan/basic/basic_alphabet_simple.h"(1267) inline void assign(AminoAcid & target, Ascii c_source); // "projects/library/seqan/basic/basic_alphabet_simple.h"(1276) inline void assign(AminoAcid & target, Unicode c_source); // "projects/library/seqan/basic/basic_alphabet_simple.h"(1285) template inline void assign(TTarget & target, TSource & source); // "projects/library/seqan/basic/basic_transport.h"(52) template inline void assign(TTarget & target, TSource const & source); // "projects/library/seqan/basic/basic_transport.h"(60) template inline void assign(Proxy & target, TSource & source); // "projects/library/seqan/basic/basic_transport.h"(73) template inline void assign(Proxy & target, TSource const & source); // "projects/library/seqan/basic/basic_transport.h"(82) template inline void assign(Iter & target, TSource const & source); // "projects/library/seqan/basic/basic_iterator_position.h"(440) template inline void assign(Holder & target_, Holder const & source_); // "projects/library/seqan/basic/basic_holder.h"(554) template inline void assign(Holder & target_, Holder const & source_); // "projects/library/seqan/basic/basic_holder.h"(774) template inline void assign(Holder & target_, Holder const & source_); // "projects/library/seqan/basic/basic_holder.h"(1091) template inline void assign(Iter > & target, TSource const & source); // "projects/library/seqan/basic/basic_iterator_adaptor.h"(514) template inline void assign(Iter & target, TSource const & source); // "projects/library/seqan/basic/basic_iterator_adapt_std.h"(427) //____________________________________________________________________________ // assignHost template inline void assignHost(T & me, THost & host_); // "projects/library/seqan/basic/basic_host.h"(135) template inline void assignHost(T & me, THost const & host_); // "projects/library/seqan/basic/basic_host.h"(143) //____________________________________________________________________________ // assignValue template inline void assignValue(Iter & me, TValue _value); // "projects/library/seqan/basic/basic_iterator_position.h"(184) template inline void assignValue(Iter const & me, TValue _value); // "projects/library/seqan/basic/basic_iterator_position.h"(192) template inline void assignValue(Holder & me, TSource const & value_); // "projects/library/seqan/basic/basic_holder.h"(512) template inline void assignValue(Holder & me, TSource const & value_); // "projects/library/seqan/basic/basic_holder.h"(752) template inline void assignValue(Holder & me, TSource const & value_); // "projects/library/seqan/basic/basic_holder.h"(1049) template inline void assignValue(T & me, TValue const & _value); // "projects/library/seqan/basic/basic_iterator.h"(258) template inline void assignValue(T const & me, TValue const & _value); // "projects/library/seqan/basic/basic_iterator.h"(268) template inline void assignValue(Iter > & me, TValue const & _value); // "projects/library/seqan/basic/basic_iterator_adaptor.h"(288) template inline void assignValue(Iter > const & me, TValue const & _value); // "projects/library/seqan/basic/basic_iterator_adaptor.h"(296) template inline void assignValue(Iter & me, TValue & val); // "projects/library/seqan/basic/basic_iterator_adapt_std.h"(165) template inline void assignValue(Iter & me, TValue const & val); // "projects/library/seqan/basic/basic_iterator_adapt_std.h"(172) //____________________________________________________________________________ // assignValueAt template inline TSource & assignValueAt(TObject &me, TPos k, TSource &source); // "projects/library/seqan/basic/basic_aggregates.h"(442) template inline TSource const & assignValueAt(TObject &me, TPos k, TSource const &source); // "projects/library/seqan/basic/basic_aggregates.h"(449) template inline SSS const assignValueAt(Tuple &me, TPos k, SSS const source); // "projects/library/seqan/basic/basic_aggregates.h"(455) template inline SSS const assignValueAt(Tuple &me, TPos k, SSS const source); // "projects/library/seqan/basic/basic_aggregates.h"(460) template inline SimpleType const & assignValueAt(Tuple &me, TPos k, SimpleType const &source); // "projects/library/seqan/basic/basic_aggregates.h"(468) //____________________________________________________________________________ // assignValueI1 template inline void assignValueI1(Pair &pair, T const &_i); // "projects/library/seqan/basic/basic_aggregates.h"(613) template inline void assignValueI1(Pair > &pair, T const &_i); // "projects/library/seqan/basic/basic_aggregates.h"(624) template inline T const assignValueI1(Triple &triple, T const &_i); // "projects/library/seqan/basic/basic_aggregates.h"(638) //____________________________________________________________________________ // assignValueI2 template inline void assignValueI2(Pair &pair, T const &_i); // "projects/library/seqan/basic/basic_aggregates.h"(618) template inline void assignValueI2(Pair > &pair, T const &_i); // "projects/library/seqan/basic/basic_aggregates.h"(631) template inline T const assignValueI2(Triple &triple, T const &_i); // "projects/library/seqan/basic/basic_aggregates.h"(643) //____________________________________________________________________________ // assignValueI3 template inline T const assignValueI3(Triple &triple, T const &_i); // "projects/library/seqan/basic/basic_aggregates.h"(648) //____________________________________________________________________________ // atBegin template inline bool atBegin(T const & it, TContainer const & cont); // "projects/library/seqan/basic/basic_iterator.h"(394) template inline bool atBegin(T const & it); // "projects/library/seqan/basic/basic_iterator.h"(404) //____________________________________________________________________________ // atEnd template inline bool atEnd(T & it, TContainer const & cont); // "projects/library/seqan/basic/basic_iterator.h"(435) template inline bool atEnd(T const & it, TContainer const & cont); // "projects/library/seqan/basic/basic_iterator.h"(443) template inline bool atEnd(T & it); // "projects/library/seqan/basic/basic_iterator.h"(452) template inline bool atEnd(T const & it); // "projects/library/seqan/basic/basic_iterator.h"(459) template inline bool atEnd(Iter > & me); // "projects/library/seqan/basic/basic_iterator_adaptor.h"(501) //____________________________________________________________________________ // atNil template inline bool atNil(TIterator & me); // "projects/library/seqan/basic/basic_iterator.h"(714) template inline bool atNil(TIterator * me); // "projects/library/seqan/basic/basic_iterator.h"(723) //____________________________________________________________________________ // call_allocate template inline void call_allocate(TMe & me, TValue * & data, TSize const count); // "projects/library/seqan/basic/basic_allocator_to_std.h"(33) //____________________________________________________________________________ // call_deallocate template inline void call_deallocate(TMe & me, TValue * data, TSize const count); // "projects/library/seqan/basic/basic_allocator_to_std.h"(38) //____________________________________________________________________________ // clear template void clear(Allocator > & me); // "projects/library/seqan/basic/basic_allocator_singlepool.h"(146) template void clear(Allocator > & me); // "projects/library/seqan/basic/basic_allocator_singlepool.h"(266) template inline void clear(Holder & me); // "projects/library/seqan/basic/basic_holder.h"(314) template inline void clear(Holder & me); // "projects/library/seqan/basic/basic_holder.h"(685) template inline void clear(Holder & me); // "projects/library/seqan/basic/basic_holder.h"(901) template void clear(Allocator > & me); // "projects/library/seqan/basic/basic_allocator_multipool.h"(125) template void clear(Allocator > & me); // "projects/library/seqan/basic/basic_allocator_simple.h"(126) //template void clear(Allocator > & me); // "projects/library/seqan/basic/basic_allocator_chunkpool.h"(157) template void clear(Allocator > & me); // "projects/library/seqan/basic/basic_allocator_chunkpool.h"(289) template inline void clear(Tuple &me); // "projects/library/seqan/basic/basic_aggregates.h"(479) template inline void clear(Tuple &me); // "projects/library/seqan/basic/basic_aggregates.h"(483) //____________________________________________________________________________ // clearHost template inline void clearHost(T & me); // "projects/library/seqan/basic/basic_host.h"(59) //____________________________________________________________________________ // container template inline typename Container::Type container(T me); // "projects/library/seqan/basic/basic_iterator.h"(328) //____________________________________________________________________________ // convert template inline typename Convert::Type convert(TSource const & source); // "projects/library/seqan/basic/basic_converter.h"(110) //____________________________________________________________________________ // convertImpl template inline typename _RemoveConst::Type convertImpl(Convert const, SimpleType const & source_); // "projects/library/seqan/basic/basic_alphabet_simple.h"(247) template inline typename Convert >::Type convertImpl(Convert const, Proxy & source); // "projects/library/seqan/basic/basic_proxy.h"(264) template inline typename Convert const>::Type convertImpl(Convert const, Proxy const & source); // "projects/library/seqan/basic/basic_proxy.h"(271) template inline typename Convert::Type convertImpl(Convert const, TSource & source); // "projects/library/seqan/basic/basic_converter.h"(78) template inline typename Convert::Type convertImpl(Convert const, TSource const & source); // "projects/library/seqan/basic/basic_converter.h"(85) //____________________________________________________________________________ // create template inline void create(Holder & me); // "projects/library/seqan/basic/basic_holder.h"(361) template inline void create(Holder & me, typename _Parameter::Type value_); // "projects/library/seqan/basic/basic_holder.h"(395) template inline void create(Holder & me); // "projects/library/seqan/basic/basic_holder.h"(694) template inline void create(Holder & me, TValue const & value_); // "projects/library/seqan/basic/basic_holder.h"(704) template inline void create(Holder & me); // "projects/library/seqan/basic/basic_holder.h"(932) template inline void create(Holder & me, TValue const & value_); // "projects/library/seqan/basic/basic_holder.h"(966) //____________________________________________________________________________ // createHost template