/*
 * ============================================================================
 *
 *       Filename:  HDFBasReader_gtest.cpp
 *
 *    Description:  Test hdf/HDFBasReader.hpp
 *
 *        Version:  1.0
 *        Created:  08/23/2013 10:17:14 AM
 *       Revision:  08/20/2014
 *       Compiler:  gcc
 *
 *         Author:  Yuan Li (yli), yli@pacificbiosciences.com
 *        Company:  Pacific Biosciences
 *
 * ============================================================================
 */

#include <gtest/gtest.h>

#include <pbdata/testdata.h>
#include <hdf/HDFBasReader.hpp>

using namespace H5;

class HDFBasReaderTEST : public ::testing::Test
{
public:
    virtual void SetUp()
    {
        fileName = baxFile3;
        reader.InitializeDefaultIncludedFields();
        ASSERT_EQ(reader.Initialize(fileName), 1);
    }
    virtual void TearDown() { reader.Close(); }
    std::string fileName;
    T_HDFBasReader<SMRTSequence> reader;
};

TEST_F(HDFBasReaderTEST, ReadBaseFromBaseCalls)
{
    ASSERT_EQ(reader.GetMovieName(),
              "m150223_190837_42175_c100735112550000001823160806051530_s1_p0");
    SMRTSequence seq;

    for (int i = 0; i < 1000; i++) {
        reader.GetNext(seq);
    }
}

TEST_F(HDFBasReaderTEST, GetChemistryTriple)
{
    std::string bindingKit, sequencingKit, version;
    reader.GetChemistryTriple(bindingKit, sequencingKit, version);
    EXPECT_EQ(bindingKit, "100356300");
    EXPECT_EQ(sequencingKit, "100356200");
    EXPECT_EQ(version, "2.3");
}