MANIFEST.in
README
setup.py
./bin/call_peaks
./bin/run_grit
GRIT.egg-info/PKG-INFO
GRIT.egg-info/SOURCES.txt
GRIT.egg-info/dependency_links.txt
GRIT.egg-info/requires.txt
GRIT.egg-info/top_level.txt
grit/__init__.py
grit/build_transcripts.py
grit/call_peaks_support_fns.c
grit/config.py
grit/elements.py
grit/estimate_transcript_expression.py
grit/f_matrix.py
grit/find_elements.py
grit/frag_len.py
grit/frequency_estimation.py
grit/genes.py
grit/merge.py
grit/peaks.py
grit/sparsify_support_fns.c
grit/transcript.py
grit/analyze/__init__.py
grit/analyze/compare_annotations.py
grit/files/__init__.py
grit/files/bed.py
grit/files/fasta.py
grit/files/gtf.py
grit/files/junctions.py
grit/files/junctions_file.py
grit/files/reads.py
grit/files/tracking.py
grit/lib/__init__.py
grit/lib/arg_parsing.py
grit/lib/logging.py
grit/lib/multiprocessing_utils.py
grit/proteomics/ORF.py
grit/proteomics/__init__.py
grit/proteomics/annotate_protein_domains.py
grit/proteomics/proteomics.py