ó
‡ˆ\c           @   s•  d  Z  d d l Z d d l Z d d l Z d d l m Z d d l m Z d d l m	 Z	 d d l m
 Z
 d d l m Z d d l m Z m Z m Z m Z d d	 l m Z d d
 l m Z d d l m Z d d l m Z d d l m Z e d e ƒ d d „ ƒ Z e d e ƒ d „  ƒ Z e d e ƒ d „  ƒ Z e d e ƒ e j j  d ƒ d d „ ƒ ƒ Z! e d e ƒ e j j  d ƒ d d „ ƒ ƒ Z" d S(   s    Test the graph_lasso module.
iÿÿÿÿN(   t   linalg(   t   assert_array_almost_equal(   t   assert_array_less(   t   assert_warns_message(   t   ignore_warnings(   t   graph_lassot
   GraphLassot   GraphLassoCVt   empirical_covariance(   t   make_sparse_spd_matrix(   t   StringIO(   t   check_random_state(   t   datasets(   t   assert_equalt   categoryi    c      
   C   s  d } d } t  |  ƒ }  t | d d d |  ƒ} t j | ƒ } |  j t j | ƒ | d | ƒ} t | ƒ } xß d D]× } t ƒ  } t ƒ  }	 x† d D]~ }
 t	 | d | d |
 d t
 ƒ\ } } } | | |
 <| |	 |
 <t j | ƒ j \ } } | d k s’ t t j | ƒ d ƒ q’ q’ Wt | d
 | d d d ƒt |	 d
 |	 d d d ƒqs Wt d d	 ƒ j | ƒ } | j | ƒ t | j | d
 d d ƒt | j | d d d ƒ| | j d ƒ } t ƒ  } x< t t
 f D]. } t d | ƒ j | ƒ j } | j | ƒ qÐWt | d | d ƒ d  S(   Ni   id   t   alphagffffffî?t   random_statet   sizeg        gš™™™™™¹?g      Ð?t   cdt   larst   modet   return_costsi    t   decimali   t   assume_centeredi   (   g        gš™™™™™¹?g      Ð?(   R   R   (   R   R	   R    t   invt   multivariate_normalt   npt   zerosR   t   dictR   t   Truet   arrayt   TR   t   diffR   R   t   fitt   scoret   covariance_t   meant   listt   Falset
   precision_t   append(   R   t   dimt	   n_samplest   prect   covt   Xt   emp_covR   t   covst   icovst   methodt   cov_t   icov_t   costst   dual_gapt   modelt   Zt   precsR   t   prec_(    (    sH   lib/python2.7/site-packages/sklearn/covariance/tests/test_graph_lasso.pyt   test_graph_lasso   s>    	!		

	c       	   C   s  t  j d d d d g d d d d g d d d d g d d d d g g ƒ }  t  j d	 d d
 d g d d d d g d
 d d d g d d d d g g ƒ } t j ƒ  j } t | ƒ } xL d D]D } t | d d d t d | ƒ\ } } t | |  ƒ t | | ƒ q¸ Wd  S(   NgJSoÓÀËå?g        g¥Ú§ã1Ñ?g¾¥{!<™?g-ªêŠ¾'È?gî[­—Ã@g˜ˆ·Î¿]Ò?góÞÿdßwâ?glåÊE!Nø?g¦',ñ€²À¿g5ÒRy;2@gŽg†C%dÖ?gXéIôÅ¿g—Ìvý?R   R   R   g      ð?R   R   (   R   R   (	   R   R   R   t	   load_irist   dataR   R   R&   R   (   t   cov_Rt   icov_RR-   R.   R1   R,   t   icov(    (    sH   lib/python2.7/site-packages/sklearn/covariance/tests/test_graph_lasso.pyt   test_graph_lasso_irisE   s"    c       	   C   s2  t  j d d ƒ }  t  j d d d d g d d d d	 g d
 d d d g d d d d	 g g ƒ } t  j d d d d g d d d d g d d d d g d d d d g g ƒ } t j ƒ  j |  d  d  … f } t | ƒ } xX d# D]P } t | d d d t d  | ƒ\ } } t	 | | d! d" ƒt	 | | d! d" ƒqÚ Wd  S($   Ni
   i   g{®Gáz´?gtì<­i­?g­üªÈÑb?gHâŽWµY?gÕ«rûƒµ?gHýç´Nk?gÛ¨šxV4b?gå¢ÈÑb?gè`Ü´Nk?gR*è´N{?gLÆgö×?g:glWµY?gEë’xV4b?gR§°%l8@gƒ¯,ôèÔ0Àg        gŸ¹éÔ0ÀgÁCáKZ8@gû‘°ÜÓÀg      )ÀgTs —ÜÓÀgìGÂrO#c@gm>ãÿÿ(Àg     è|@R   R   R   g{®Gáz„?R   R   R   i   (   R   R   (
   R   t   arangeR   R   R;   R<   R   R   R&   R   (   t   indicesR=   R>   R-   R.   R1   R,   R?   (    (    sH   lib/python2.7/site-packages/sklearn/covariance/tests/test_graph_lasso.pyt   test_graph_lasso_iris_singular^   s$    s"   ignore: You should specify a valuei   c         C   sÔ   d } d } t  |  ƒ }  t | d d d |  ƒ} t j | ƒ } |  j t j | ƒ | d | ƒ} t j } z2 t	 ƒ  t _ t
 d d d	 d d
 d ƒ j | ƒ Wd  | t _ Xt
 d	 d d g d
 d d d ƒ j | ƒ d  S(   Ni   i   R   g¸…ëQ¸î?R   R   t   verboseid   t   alphast   tolgš™™™™™¹?gš™™™™™é?g      à?t   n_jobsi   (   R   R	   R    R   R   R   R   t   syst   stdoutR
   R   R!   (   R   R)   R*   R+   R,   R-   t   orig_stdout(    (    sH   lib/python2.7/site-packages/sklearn/covariance/tests/test_graph_lasso.pyt   test_graph_lasso_cvz   s    	!	&
c            sÄ   d } d } t  |  ƒ }  t | d d d |  ƒ} t j | ƒ } |  j t j | ƒ | d | ƒ} t d d d	 g d
 d d d ƒ ‰  ˆ  j | ƒ d } t	 t
 | ‡  f d †  ƒ t ˆ  j ˆ  j ƒ d  S(   Ni   i   R   g¸…ëQ¸î?R   R   RE   gš™™™™™é?g      à?RF   gš™™™™™¹?RG   i   sn   Attribute grid_scores was deprecated in version 0.19 and will be removed in 0.21. Use ``grid_scores_`` insteadc              s   ˆ  j  S(   N(   t   grid_scores(    (   R   (    sH   lib/python2.7/site-packages/sklearn/covariance/tests/test_graph_lasso.pyt   <lambda>¤   s    (   R   R	   R    R   R   R   R   R   R!   R   t   DeprecationWarningR   RL   t   grid_scores_(   R   R)   R*   R+   R,   R-   t   depr_message(    (   R   sH   lib/python2.7/site-packages/sklearn/covariance/tests/test_graph_lasso.pyt   test_deprecated_grid_scores’   s    	!!	(#   t   __doc__RH   t   pytestt   numpyR   t   scipyR    t   sklearn.utils.testingR   R   R   R   t   sklearn.covarianceR   R   R   R   t"   sklearn.datasets.samples_generatorR	   t   sklearn.externals.six.movesR
   t   sklearn.utilsR   t   sklearnR   t   numpy.testingR   RN   R:   R@   RC   t   markt   filterwarningsRK   RQ   (    (    (    sH   lib/python2.7/site-packages/sklearn/covariance/tests/test_graph_lasso.pyt   <module>   s0   "+