ó
?îec           @   s8   d  d l  Z  d  d l Z d d d „  ƒ  YZ d „  Z d S(   iÿÿÿÿNt   BedGraphFilec           B   s)   e  Z d  „  Z e j d „ Z d „  Z RS(   c         C   s   t  j | ƒ |  _ d  S(   N(   t   pysamt	   Tabixfilet   tbx(   t   selft   bedgraph(    (    s5   /tmp/pip-install-bGcd2k/NucleoATAC/pyatac/bedgraph.pyt   __init__   s    c         C   s¨   t  j | | ƒ | } | |  j j k r¤ xx |  j j | | | d t j ƒ  ƒD]O } t | d ƒ | t t	 | d ƒ | d ƒ t
 t	 | d ƒ | | | ƒ +qN Wn  | S(   Nt   parseri   i   i    i   (   t   npt   onesR   t   contigst   fetchR   t   asTuplet   floatt   maxt   intt   min(   R   t   chromt   startt   endt   emptyt   outt   row(    (    s5   /tmp/pip-install-bGcd2k/NucleoATAC/pyatac/bedgraph.pyt   read	   s
    +Pc         C   s   |  j  j ƒ  d  S(   N(   R   t   close(   R   (    (    s5   /tmp/pip-install-bGcd2k/NucleoATAC/pyatac/bedgraph.pyR      s    (   t   __name__t
   __module__R   R   t   nanR   R   (    (    (    s5   /tmp/pip-install-bGcd2k/NucleoATAC/pyatac/bedgraph.pyR       s   	c      
   C   sA   t  j |  |  d ƒ t  j |  d d d d d d d d t ƒd  S(	   Ns   .gzt   seq_coli    t	   start_coli   t   end_coli   t	   zerobased(   R   t   tabix_compresst   tabix_indext   True(   R   (    (    s5   /tmp/pip-install-bGcd2k/NucleoATAC/pyatac/bedgraph.pyt   tabix_bedgraph   s    (    (   R   t   numpyR   R    R#   (    (    (    s5   /tmp/pip-install-bGcd2k/NucleoATAC/pyatac/bedgraph.pyt   <module>   s   