ó ¤>dc@sndZddlZddlZddlmZddlmZdefd„ƒYZ defd„ƒYZ dS( s: Helper class for getting information about a fast5 file. iÿÿÿÿN(tversion(t_cleantReadInfocBseZdZddd„ZRS(s6 This object provides basic details about a read. igð¿cCsU||_||_t|_||_t|_d|_||_||_||_ dS(s¹ Constructs an object describing a read. :param read_number: A read number, unique for the channel. :param read_id: A globally unique read id. :param start_time: The start time of the read (in samples). :param duration: The duration of the read (in samples). :param mux: The mux of the channel when the read occurred. :param median_before: The median current before the read. iN( t read_numbertread_idtFalset has_raw_datatdurationthas_event_datatevent_data_countt start_timet start_muxt median_before(tselfRRR RtmuxR ((sA/tmp/pip-install-m8tpmx/ont-fast5-api/ont_fast5_api/fast5_info.pyt__init__s        (t__name__t __module__t__doc__R(((sA/tmp/pip-install-m8tpmx/ont-fast5-api/ont_fast5_api/fast5_info.pyR st Fast5InfocBs eZdZd„Zd„ZRS(s< This object provides some basic details about a read fast5 file. **Fields** * **valid:** Indicates whether the fast5 file is valid or not. * **version:** Indicates the version of the read fast5 file specification the file conforms to (if any). * **read_info:** A list of ReadInfo objects. One entry for each read. * **read_number_map:** A dictionary giving the index into the read_info list for each read number. * **read_id_map:** A dictionary giving the index into the read_info list for each read-id. c CsÂt|_d|_g|_i|_i|_yKtj|dƒ3}d|j kr¦t |j dƒ|_ t j dƒ}t jt|j ƒƒ|kr¸t|_q¸nt|_d|_ |jƒ}d|krã|djƒ}nd|kr|jƒ rt|_nd|kr t|_n|dj jd ƒ|_|jdkr`|jƒr`t|_nd |krû|d jƒ}x”|D]q}d j|ƒ}||} | j } t | d ƒ} d| krÚt | dƒ} n*|jƒsòt|_ntjj|ƒ} t | dƒ} t | dƒ}t | jddƒƒ}t | jddƒƒ}t| | | |||ƒ}d| kr‡t|_n0|jƒr·d| kr«t|_q·t|_n|jj|ƒt|jƒd}||j| <||j| s