# # CRP energy matrix from Kinney et al. (2010). # Matrix values are in units of kcal/mol. # # References # # Kinney JB et al. (2010) Using deep sequencing to characterize the # biophysical mechanism of a transcriptional regulatory sequence. # Proc Natl Acad Sci USA. 107(20):9158–63. # pos A C G T 0 -0.18364197530864196 0.15586419753086422 0.09413580246913582 -0.06635802469135801 1 -0.29012345679012347 0.2777777777777778 0.1111111111111111 -0.09876543209876544 2 -0.2762345679012346 0.316358024691358 0.16820987654320985 -0.20833333333333334 3 -0.22685185185185186 0.2854938271604938 0.2978395061728395 -0.35648148148148145 4 -0.0601851851851852 0.1435185185185185 0.05709876543209874 -0.1404320987654321 5 0.29475308641975306 -0.16820987654320985 0.48611111111111116 -0.6126543209876543 6 0.17901234567901236 0.6172839506172839 -0.8518518518518517 0.0555555555555556 7 0.033950617283950574 0.21296296296296294 0.324074074074074 -0.5709876543209876 8 0.44444444444444425 0.5925925925925926 -1.1172839506172838 0.08024691358024684 9 -0.6280864197530864 -0.0601851851851852 0.28549382716049376 0.4027777777777777 10 0.2916666666666666 -0.21450617283950618 0.07561728395061725 -0.1527777777777778 11 0.09104938271604938 -0.2237654320987654 0.004629629629629634 0.12808641975308638 12 0.1111111111111111 -0.02469135802469136 0.07407407407407407 -0.16049382716049382 13 -0.13734567901234565 0.08487654320987655 -0.0632716049382716 0.11574074074074073 14 0.162037037037037 -0.041666666666666664 -0.1898148148148148 0.06944444444444443 15 -0.33641975308641975 0.11419753086419748 0.003086419753086422 0.21913580246913578 16 0.4444444444444444 0.3024691358024691 -0.049382716049382755 -0.6975308641975309 17 0.08024691358024698 -1.0987654320987652 0.6111111111111112 0.4074074074074075 18 -0.5864197530864197 0.3703703703703704 0.17901234567901236 0.03703703703703707 19 -0.17438271604938277 -0.6867283950617283 0.677469135802469 0.18364197530864187 20 -0.8009259259259259 0.5447530864197531 -0.17746913580246917 0.4336419753086419 21 -0.220679012345679 0.2237654320987654 0.057098765432098776 -0.06018518518518517 22 -0.06635802469135797 0.17438271604938269 0.4274691358024692 -0.5354938271604938 23 -0.14660493827160495 0.14969135802469136 0.24845679012345678 -0.2515432098765432 24 0.1574074074074074 -0.08333333333333333 0.24382716049382716 -0.3179012345679012 25 0.12191358024691354 0.01697530864197532 0.09104938271604938 -0.22993827160493827