#!/bin/bash
#SBATCH --job-name=zJuC-2
#SBATCH --output=zJuC.2.out
#SBATCH --error=zJuC.2.err
#SBATCH --time=160:00:00
#SBATCH -p akundaje,sfgf
#SBATCH --cpus-per-task=16
#SBATCH --mem=100000
#SBATCH -C NO_GPU
module load java; java -Xmx40G -jar juicer_tools.jar pre /oak/stanford/groups/akundaje/marinovg/papers/2026_Chromera_Hi-C/2026-01-16-Ultima-run-Chromera/juicer-L1273+L4897-Chromera_velia-Hi-C/aligned/merged_nodups.txt /oak/stanford/groups/akundaje/marinovg/papers/2026_Chromera_Hi-C/2026-01-16-Ultima-run-Chromera/juicer-L1273+L4897-Chromera_velia-Hi-C/aligned/inter.hic /oak/stanford/groups/akundaje/marinovg/genomes/Chromerida/Chromera_velia_CCMP2878-CDMZ01/CDMZ01.chrom.sizes