Index of /kundaje/marinovg/oak/papers/2026_Chromera_Hi-C/2026-01-16-Ultima-run-Chromera/juicer-L1273+L4897-Chromera_velia-Hi-C-3D

[ICO]NameLast modifiedSizeDescription
[PARENTDIR]Parent Directory  -  
[ ]CDMZ01.0.asm2026-04-30 17:45 31K 
[ ]CDMZ01.0.assembly2026-04-30 17:48 284K 
[ ]CDMZ01.0.cprops2026-04-30 16:12 247K 
[ ]CDMZ01.0.hic2026-04-30 18:52 320M 
[TXT]CDMZ01.0_asm.scaffold_track.txt2026-04-30 17:48 827K 
[TXT]CDMZ01.0_asm.superscaf_track.txt2026-04-30 17:48 15K 
[ ]CDMZ01.1.asm2026-04-30 19:39 32K 
[ ]CDMZ01.1.assembly2026-04-30 19:42 302K 
[ ]CDMZ01.1.cprops2026-04-30 18:56 264K 
[ ]CDMZ01.1.hic2026-04-30 20:46 320M 
[TXT]CDMZ01.1_asm.scaffold_track.txt2026-04-30 19:42 869K 
[TXT]CDMZ01.1_asm.superscaf_track.txt2026-04-30 19:42 41K 
[ ]CDMZ01.2.asm2026-04-30 21:33 32K 
[ ]CDMZ01.2.assembly2026-04-30 21:36 306K 
[ ]CDMZ01.2.cprops2026-04-30 20:51 268K 
[ ]CDMZ01.2.hic2026-04-30 22:33 320M 
[TXT]CDMZ01.2_asm.scaffold_track.txt2026-04-30 21:36 878K 
[TXT]CDMZ01.2_asm.superscaf_track.txt2026-04-30 21:36 47K 
[ ]CDMZ01.FINAL.assembly2026-05-01 02:25 333K 
[ ]CDMZ01.FINAL.fasta2026-05-01 02:25 190M 
[ ]CDMZ01.FINAL.hic2026-05-01 03:29 322M 
[TXT]CDMZ01.FINAL_asm.scaffold_track.txt2026-05-01 02:30 875K 
[TXT]CDMZ01.FINAL_asm.superscaf_track.txt2026-05-01 02:30 45K 
[ ]CDMZ01.cprops2026-04-30 16:12 247K 
[TXT]CDMZ01.edits.txt2026-04-30 20:51 32K 
[ ]CDMZ01.final.asm2026-05-01 01:02 32K 
[ ]CDMZ01.final.assembly2026-05-01 01:07 305K 
[ ]CDMZ01.final.cprops2026-05-01 01:02 267K 
[ ]CDMZ01.final.fasta2026-05-01 02:14 187M 
[ ]CDMZ01.final.hic2026-05-01 02:13 320M 
[TXT]CDMZ01.mnd.txt2026-02-04 17:13 169G 
[ ]CDMZ01.polished.asm2026-04-30 22:43 32K 
[ ]CDMZ01.polished.cprops2026-04-30 22:37 268K 
[ ]CDMZ01.polished.depletion_score_narrow.wig2026-04-30 22:37 2.7M 
[ ]CDMZ01.polished.depletion_score_wide.wig2026-04-30 22:34 32K 
[TXT]CDMZ01.polished.edits_2D.txt2026-04-30 22:37 598  
[ ]CDMZ01.polished.hic2026-04-30 23:52 320M 
[ ]CDMZ01.polished.mismatch_narrow.bed2026-04-30 22:37 249  
[ ]CDMZ01.polished.mismatch_wide.bed2026-04-30 22:34 222  
[TXT]CDMZ01.polished.mismatches_2D.txt2026-04-30 22:37 1.4K 
[ ]CDMZ01.polished.split.assembly2026-05-01 00:02 307K 
[ ]CDMZ01.polished.split.depletion_score_narrow.wig2026-04-30 23:56 2.7M 
[ ]CDMZ01.polished.split.depletion_score_wide.wig2026-04-30 23:52 32K 
[TXT]CDMZ01.polished.split.edits_2D.txt2026-04-30 23:56 376  
[ ]CDMZ01.polished.split.mismatch_narrow.bed2026-04-30 23:56 139  
[ ]CDMZ01.polished.split.mismatch_wide.bed2026-04-30 23:52 112  
[TXT]CDMZ01.polished.split.mismatches_2D.txt2026-04-30 23:56 491  
[TXT]CDMZ01.polished.split.suspicious_2D.txt2026-04-30 23:56 820  
[TXT]CDMZ01.polished.suspect_2D.txt2026-04-30 22:37 2.0K 
[TXT]CDMZ01.polished_asm.scaffold_track.txt2026-04-30 22:45 878K 
[TXT]CDMZ01.polished_asm.superscaf_track.txt2026-04-30 22:45 48K 
[ ]CDMZ01.rawchrom.asm2026-05-01 01:02 32K 
[ ]CDMZ01.rawchrom.assembly2026-05-01 01:07 305K 
[ ]CDMZ01.rawchrom.cprops2026-05-01 01:02 267K 
[ ]CDMZ01.rawchrom.fasta2026-05-01 02:14 187M 
[ ]CDMZ01.rawchrom.hic2026-05-01 02:13 320M 
[TXT]CDMZ01.rawchrom_asm.scaffold_track.txt2026-05-01 01:07 874K 
[TXT]CDMZ01.rawchrom_asm.superscaf_track.txt2026-05-01 01:07 45K 
[ ]CDMZ01.resolved.asm2026-04-30 21:33 32K 
[ ]CDMZ01.resolved.cprops2026-04-30 20:51 268K 
[ ]CDMZ01.resolved.hic2026-04-30 22:33 320M 
[ ]CDMZ01.resolved.polish.assembly2026-04-30 22:45 307K 
[TXT]CDMZ01.resolved_asm.scaffold_track.txt2026-04-30 21:36 878K 
[TXT]CDMZ01.resolved_asm.superscaf_track.txt2026-04-30 21:36 47K 
[ ]CDMZ01.split.asm2026-04-30 23:59 32K 
[ ]CDMZ01.split.assembly2026-05-01 01:02 307K 
[ ]CDMZ01.split.cprops2026-04-30 23:56 269K 
[ ]CDMZ01.split.hic2026-05-01 01:01 320M 
[TXT]CDMZ01.split_asm.scaffold_track.txt2026-05-01 00:02 879K 
[TXT]CDMZ01.split_asm.superscaf_track.txt2026-05-01 00:02 48K 
[ ]LICENSE2026-04-30 16:09 1.0K 
[TXT]README.md2026-04-30 16:09 8.7K 
[TXT]archive.CDMZ01.edits.at.step.1.txt2026-04-30 20:51 27K 
[ ]coverage_wide.at.step.0.wig2026-04-30 18:56 142K 
[ ]coverage_wide.at.step.1.wig2026-04-30 20:51 142K 
[DIR]data/2026-04-30 16:09 -  
[ ]depletion_score_narrow.at.step.0.wig2026-04-30 18:56 2.5M 
[ ]depletion_score_narrow.at.step.1.wig2026-04-30 20:51 2.5M 
[ ]depletion_score_wide.at.step.0.wig2026-04-30 18:53 132K 
[ ]depletion_score_wide.at.step.1.wig2026-04-30 20:48 132K 
[DIR]edit/2026-04-30 16:09 -  
[TXT]edits.for.step.1.txt2026-04-30 18:56 25K 
[TXT]edits.for.step.2.txt2026-04-30 20:51 6.2K 
[DIR]finalize/2026-04-30 16:09 -  
[TXT]h.edits.txt2026-04-30 23:56 410  
[DIR]lift/2026-04-30 16:09 -  
[DIR]merge/2026-04-30 16:09 -  
[ ]mismatch_narrow.at.step.0.bed2026-04-30 18:56 3.9K 
[ ]mismatch_narrow.at.step.1.bed2026-04-30 20:51 1.3K 
[ ]mismatch_wide.at.step.0.bed2026-04-30 18:53 3.6K 
[ ]mismatch_wide.at.step.1.bed2026-04-30 20:48 1.1K 
[TXT]mismatches.at.step.0.txt2026-04-30 18:56 12K 
[TXT]mismatches.at.step.1.txt2026-04-30 20:51 3.6K 
[DIR]polish/2026-04-30 16:09 -  
[ ]repeats_wide.at.step.0.bed2026-04-30 18:56 1.0K 
[ ]repeats_wide.at.step.1.bed2026-04-30 20:51 624  
[TXT]run-asm-pipeline-post-review.sh2026-04-30 16:09 11K 
[TXT]run-asm-pipeline.sh2026-04-30 16:09 44K 
[DIR]scaffold/2026-04-30 16:09 -  
[DIR]seal/2026-04-30 16:09 -  
[DIR]split/2026-04-30 16:09 -  
[DIR]split_chrom_aware/2026-04-30 16:09 -  
[DIR]supp/2026-04-30 16:09 -  
[ ]suspect.at.step.0.bed2026-04-30 18:56 4.9K 
[ ]suspect.at.step.1.bed2026-04-30 20:51 1.7K 
[TXT]suspect_2D.at.step.0.txt2026-04-30 18:56 37K 
[TXT]suspect_2D.at.step.1.txt2026-04-30 20:51 9.8K 
[DIR]utils/2026-04-30 16:09 -  
[DIR]visualize/2026-04-30 16:09 -  
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