Index of /kundaje/marinovg/oak/papers/2026_Chromera_Hi-C/2026-01-16-Ultima-run-Chromera/juicer-L1273+L4897-Chromera_velia-Hi-C-3D-r5

[ICO]NameLast modifiedSizeDescription
[PARENTDIR]Parent Directory  -  
[ ]CDMZ01.0.asm2026-05-02 16:49 31K 
[ ]CDMZ01.0.assembly2026-05-02 16:54 284K 
[ ]CDMZ01.0.cprops2026-05-02 14:36 247K 
[ ]CDMZ01.0.hic2026-05-02 17:42 320M 
[TXT]CDMZ01.0_asm.scaffold_track.txt2026-05-02 16:54 827K 
[TXT]CDMZ01.0_asm.superscaf_track.txt2026-05-02 16:54 15K 
[ ]CDMZ01.1.asm2026-05-02 19:05 32K 
[ ]CDMZ01.1.assembly2026-05-02 19:08 302K 
[ ]CDMZ01.1.cprops2026-05-02 17:47 264K 
[ ]CDMZ01.1.hic2026-05-02 19:49 320M 
[TXT]CDMZ01.1_asm.scaffold_track.txt2026-05-02 19:08 869K 
[TXT]CDMZ01.1_asm.superscaf_track.txt2026-05-02 19:08 41K 
[ ]CDMZ01.2.asm2026-05-02 21:01 32K 
[ ]CDMZ01.2.assembly2026-05-02 21:05 306K 
[ ]CDMZ01.2.cprops2026-05-02 19:54 268K 
[ ]CDMZ01.2.hic2026-05-02 21:57 320M 
[TXT]CDMZ01.2_asm.scaffold_track.txt2026-05-02 21:05 878K 
[TXT]CDMZ01.2_asm.superscaf_track.txt2026-05-02 21:05 47K 
[ ]CDMZ01.3.asm2026-05-02 23:07 32K 
[ ]CDMZ01.3.assembly2026-05-02 23:10 308K 
[ ]CDMZ01.3.cprops2026-05-02 22:02 270K 
[ ]CDMZ01.3.hic2026-05-02 23:58 320M 
[TXT]CDMZ01.3_asm.scaffold_track.txt2026-05-02 23:10 882K 
[TXT]CDMZ01.3_asm.superscaf_track.txt2026-05-02 23:10 50K 
[ ]CDMZ01.4.asm2026-05-03 01:01 32K 
[ ]CDMZ01.4.assembly2026-05-03 01:05 309K 
[ ]CDMZ01.4.cprops2026-05-03 00:02 270K 
[ ]CDMZ01.4.hic2026-05-03 01:52 320M 
[TXT]CDMZ01.4_asm.scaffold_track.txt2026-05-03 01:05 883K 
[TXT]CDMZ01.4_asm.superscaf_track.txt2026-05-03 01:05 51K 
[ ]CDMZ01.5.asm2026-05-03 02:52 32K 
[ ]CDMZ01.5.assembly2026-05-03 02:56 309K 
[ ]CDMZ01.5.cprops2026-05-03 01:57 270K 
[ ]CDMZ01.5.hic2026-05-03 03:41 320M 
[TXT]CDMZ01.5_asm.scaffold_track.txt2026-05-03 02:56 884K 
[TXT]CDMZ01.5_asm.superscaf_track.txt2026-05-03 02:56 51K 
[ ]CDMZ01.FINAL.assembly2026-05-03 06:41 335K 
[ ]CDMZ01.FINAL.fasta2026-05-03 06:41 190M 
[ ]CDMZ01.FINAL.hic2026-05-03 07:38 322M 
[TXT]CDMZ01.FINAL_asm.scaffold_track.txt2026-05-03 06:55 878K 
[TXT]CDMZ01.FINAL_asm.superscaf_track.txt2026-05-03 06:55 48K 
[ ]CDMZ01.cprops2026-05-02 14:36 247K 
[TXT]CDMZ01.edits.txt2026-05-03 01:57 36K 
[ ]CDMZ01.final.asm2026-05-03 05:45 32K 
[ ]CDMZ01.final.assembly2026-05-03 05:59 306K 
[ ]CDMZ01.final.cprops2026-05-03 05:45 268K 
[ ]CDMZ01.final.fasta2026-05-03 06:39 187M 
[ ]CDMZ01.final.hic2026-05-03 06:39 320M 
[TXT]CDMZ01.mnd.txt2026-02-04 17:13 169G 
[ ]CDMZ01.polished.asm2026-05-03 04:00 32K 
[ ]CDMZ01.polished.cprops2026-05-03 03:46 271K 
[ ]CDMZ01.polished.depletion_score_narrow.wig2026-05-03 03:46 2.7M 
[ ]CDMZ01.polished.depletion_score_wide.wig2026-05-03 03:41 32K 
[TXT]CDMZ01.polished.edits_2D.txt2026-05-03 03:46 269  
[ ]CDMZ01.polished.hic2026-05-03 04:43 320M 
[ ]CDMZ01.polished.mismatch_narrow.bed2026-05-03 03:46 110  
[ ]CDMZ01.polished.mismatch_wide.bed2026-05-03 03:41 110  
[TXT]CDMZ01.polished.mismatches_2D.txt2026-05-03 03:46 475  
[ ]CDMZ01.polished.split.assembly2026-05-03 05:02 309K 
[ ]CDMZ01.polished.split.depletion_score_narrow.wig2026-05-03 04:48 2.7M 
[ ]CDMZ01.polished.split.depletion_score_wide.wig2026-05-03 04:43 32K 
[TXT]CDMZ01.polished.split.edits_2D.txt2026-05-03 04:48 269  
[ ]CDMZ01.polished.split.mismatch_narrow.bed2026-05-03 04:48 110  
[ ]CDMZ01.polished.split.mismatch_wide.bed2026-05-03 04:43 110  
[TXT]CDMZ01.polished.split.mismatches_2D.txt2026-05-03 04:48 475  
[TXT]CDMZ01.polished.split.suspicious_2D.txt2026-05-03 04:48 697  
[TXT]CDMZ01.polished.suspect_2D.txt2026-05-03 03:46 697  
[TXT]CDMZ01.polished_asm.scaffold_track.txt2026-05-03 04:04 884K 
[TXT]CDMZ01.polished_asm.superscaf_track.txt2026-05-03 04:04 52K 
[ ]CDMZ01.rawchrom.asm2026-05-03 05:45 32K 
[ ]CDMZ01.rawchrom.assembly2026-05-03 05:59 306K 
[ ]CDMZ01.rawchrom.cprops2026-05-03 05:45 268K 
[ ]CDMZ01.rawchrom.fasta2026-05-03 06:39 187M 
[ ]CDMZ01.rawchrom.hic2026-05-03 06:39 320M 
[TXT]CDMZ01.rawchrom_asm.scaffold_track.txt2026-05-03 05:59 877K 
[TXT]CDMZ01.rawchrom_asm.superscaf_track.txt2026-05-03 05:59 48K 
[ ]CDMZ01.resolved.asm2026-05-03 02:52 32K 
[ ]CDMZ01.resolved.cprops2026-05-03 01:57 270K 
[ ]CDMZ01.resolved.hic2026-05-03 03:41 320M 
[ ]CDMZ01.resolved.polish.assembly2026-05-03 04:04 309K 
[TXT]CDMZ01.resolved_asm.scaffold_track.txt2026-05-03 02:56 884K 
[TXT]CDMZ01.resolved_asm.superscaf_track.txt2026-05-03 02:56 51K 
[ ]CDMZ01.split.asm2026-05-03 04:58 32K 
[ ]CDMZ01.split.assembly2026-05-03 05:45 309K 
[ ]CDMZ01.split.cprops2026-05-03 04:48 271K 
[ ]CDMZ01.split.hic2026-05-03 05:45 320M 
[TXT]CDMZ01.split_asm.scaffold_track.txt2026-05-03 05:02 885K 
[TXT]CDMZ01.split_asm.superscaf_track.txt2026-05-03 05:02 52K 
[ ]LICENSE2026-05-02 14:33 1.0K 
[TXT]README.md2026-05-02 14:33 8.7K 
[TXT]archive.CDMZ01.edits.at.step.1.txt2026-05-02 19:54 27K 
[TXT]archive.CDMZ01.edits.at.step.2.txt2026-05-02 22:02 32K 
[TXT]archive.CDMZ01.edits.at.step.3.txt2026-05-03 00:02 35K 
[TXT]archive.CDMZ01.edits.at.step.4.txt2026-05-03 01:57 36K 
[ ]coverage_wide.at.step.0.wig2026-05-02 17:47 142K 
[ ]coverage_wide.at.step.1.wig2026-05-02 19:54 142K 
[ ]coverage_wide.at.step.2.wig2026-05-02 22:02 142K 
[ ]coverage_wide.at.step.3.wig2026-05-03 00:02 142K 
[ ]coverage_wide.at.step.4.wig2026-05-03 01:57 142K 
[DIR]data/2026-05-02 14:33 -  
[ ]depletion_score_narrow.at.step.0.wig2026-05-02 17:47 2.5M 
[ ]depletion_score_narrow.at.step.1.wig2026-05-02 19:54 2.5M 
[ ]depletion_score_narrow.at.step.2.wig2026-05-02 22:02 2.5M 
[ ]depletion_score_narrow.at.step.3.wig2026-05-03 00:02 2.5M 
[ ]depletion_score_narrow.at.step.4.wig2026-05-03 01:57 2.5M 
[ ]depletion_score_wide.at.step.0.wig2026-05-02 17:43 132K 
[ ]depletion_score_wide.at.step.1.wig2026-05-02 19:51 132K 
[ ]depletion_score_wide.at.step.2.wig2026-05-02 21:58 132K 
[ ]depletion_score_wide.at.step.3.wig2026-05-02 23:59 124K 
[ ]depletion_score_wide.at.step.4.wig2026-05-03 01:54 132K 
[DIR]edit/2026-05-02 14:33 -  
[TXT]edits.for.step.1.txt2026-05-02 17:47 25K 
[TXT]edits.for.step.2.txt2026-05-02 19:54 6.2K 
[TXT]edits.for.step.3.txt2026-05-02 22:02 2.7K 
[TXT]edits.for.step.4.txt2026-05-03 00:02 1.3K 
[TXT]edits.for.step.5.txt2026-05-03 01:57 269  
[DIR]finalize/2026-05-02 14:33 -  
[TXT]h.edits.txt2026-05-03 04:48 289  
[DIR]lift/2026-05-02 14:33 -  
[DIR]merge/2026-05-02 14:33 -  
[ ]mismatch_narrow.at.step.0.bed2026-05-02 17:47 3.9K 
[ ]mismatch_narrow.at.step.1.bed2026-05-02 19:54 1.3K 
[ ]mismatch_narrow.at.step.2.bed2026-05-02 22:02 1.1K 
[ ]mismatch_narrow.at.step.3.bed2026-05-03 00:02 949  
[ ]mismatch_narrow.at.step.4.bed2026-05-03 01:57 908  
[ ]mismatch_wide.at.step.0.bed2026-05-02 17:43 3.6K 
[ ]mismatch_wide.at.step.1.bed2026-05-02 19:51 1.1K 
[ ]mismatch_wide.at.step.2.bed2026-05-02 21:58 904  
[ ]mismatch_wide.at.step.3.bed2026-05-02 23:59 514  
[ ]mismatch_wide.at.step.4.bed2026-05-03 01:54 589  
[TXT]mismatches.at.step.0.txt2026-05-02 17:47 12K 
[TXT]mismatches.at.step.1.txt2026-05-02 19:54 3.6K 
[TXT]mismatches.at.step.2.txt2026-05-02 22:02 3.5K 
[TXT]mismatches.at.step.3.txt2026-05-03 00:02 2.3K 
[TXT]mismatches.at.step.4.txt2026-05-03 01:57 2.4K 
[DIR]polish/2026-05-02 14:33 -  
[ ]repeats_wide.at.step.0.bed2026-05-02 17:47 1.0K 
[ ]repeats_wide.at.step.1.bed2026-05-02 19:54 624  
[ ]repeats_wide.at.step.2.bed2026-05-02 22:02 574  
[ ]repeats_wide.at.step.3.bed2026-05-03 00:02 580  
[ ]repeats_wide.at.step.4.bed2026-05-03 01:57 638  
[TXT]run-asm-pipeline-post-review.sh2026-05-02 14:33 11K 
[TXT]run-asm-pipeline.sh2026-05-02 14:33 44K 
[DIR]scaffold/2026-05-02 14:33 -  
[DIR]seal/2026-05-02 14:33 -  
[DIR]split/2026-05-02 14:33 -  
[DIR]split_chrom_aware/2026-05-02 14:33 -  
[DIR]supp/2026-05-02 14:33 -  
[ ]suspect.at.step.0.bed2026-05-02 17:47 4.9K 
[ ]suspect.at.step.1.bed2026-05-02 19:54 1.7K 
[ ]suspect.at.step.2.bed2026-05-02 22:02 1.5K 
[ ]suspect.at.step.3.bed2026-05-03 00:02 1.2K 
[ ]suspect.at.step.4.bed2026-05-03 01:57 1.3K 
[TXT]suspect_2D.at.step.0.txt2026-05-02 17:47 37K 
[TXT]suspect_2D.at.step.1.txt2026-05-02 19:54 9.8K 
[TXT]suspect_2D.at.step.2.txt2026-05-02 22:02 6.1K 
[TXT]suspect_2D.at.step.3.txt2026-05-03 00:02 3.6K 
[TXT]suspect_2D.at.step.4.txt2026-05-03 01:57 2.6K 
[DIR]utils/2026-05-02 14:33 -  
[DIR]visualize/2026-05-02 14:33 -  
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