Index of /kundaje/marinovg/oak/papers/2026_Chromera_Hi-C/2026-01-16-Ultima-run-Chromera/juicer-L1273+L4897-Chromera_velia-Hi-C-3D-r100

[ICO]NameLast modifiedSizeDescription
[PARENTDIR]Parent Directory  -  
[ ]CDMZ01.0.asm2026-05-04 22:11 31K 
[ ]CDMZ01.0.assembly2026-05-04 22:21 284K 
[ ]CDMZ01.0.cprops2026-05-04 12:45 247K 
[ ]CDMZ01.0.hic2026-05-04 23:03 320M 
[TXT]CDMZ01.0_asm.scaffold_track.txt2026-05-04 22:21 827K 
[TXT]CDMZ01.0_asm.superscaf_track.txt2026-05-04 22:21 15K 
[ ]CDMZ01.1.asm2026-05-05 00:45 32K 
[ ]CDMZ01.1.assembly2026-05-05 00:48 302K 
[ ]CDMZ01.1.cprops2026-05-04 23:07 264K 
[ ]CDMZ01.1.hic2026-05-05 01:32 320M 
[TXT]CDMZ01.1_asm.scaffold_track.txt2026-05-05 00:48 869K 
[TXT]CDMZ01.1_asm.superscaf_track.txt2026-05-05 00:48 41K 
[ ]CDMZ01.2.asm2026-05-05 02:42 32K 
[ ]CDMZ01.2.assembly2026-05-05 02:46 306K 
[ ]CDMZ01.2.cprops2026-05-05 01:37 268K 
[ ]CDMZ01.2.hic2026-05-05 03:28 320M 
[TXT]CDMZ01.2_asm.scaffold_track.txt2026-05-05 02:46 878K 
[TXT]CDMZ01.2_asm.superscaf_track.txt2026-05-05 02:46 47K 
[ ]CDMZ01.3.asm2026-05-05 04:30 32K 
[ ]CDMZ01.3.assembly2026-05-05 04:34 308K 
[ ]CDMZ01.3.cprops2026-05-05 03:33 270K 
[ ]CDMZ01.3.hic2026-05-05 05:17 320M 
[TXT]CDMZ01.3_asm.scaffold_track.txt2026-05-05 04:34 882K 
[TXT]CDMZ01.3_asm.superscaf_track.txt2026-05-05 04:34 50K 
[ ]CDMZ01.4.asm2026-05-05 06:20 32K 
[ ]CDMZ01.4.assembly2026-05-05 06:23 309K 
[ ]CDMZ01.4.cprops2026-05-05 05:23 270K 
[ ]CDMZ01.4.hic2026-05-05 07:07 320M 
[TXT]CDMZ01.4_asm.scaffold_track.txt2026-05-05 06:23 883K 
[TXT]CDMZ01.4_asm.superscaf_track.txt2026-05-05 06:23 51K 
[ ]CDMZ01.5.asm2026-05-05 08:16 32K 
[ ]CDMZ01.5.assembly2026-05-05 08:19 309K 
[ ]CDMZ01.5.cprops2026-05-05 07:11 270K 
[ ]CDMZ01.5.hic2026-05-05 09:02 320M 
[TXT]CDMZ01.5_asm.scaffold_track.txt2026-05-05 08:19 884K 
[TXT]CDMZ01.5_asm.superscaf_track.txt2026-05-05 08:19 51K 
[ ]CDMZ01.6.asm2026-05-05 10:35 32K 
[ ]CDMZ01.6.assembly2026-05-05 10:38 309K 
[ ]CDMZ01.6.cprops2026-05-05 09:07 271K 
[ ]CDMZ01.6.hic2026-05-05 11:19 320M 
[TXT]CDMZ01.6_asm.scaffold_track.txt2026-05-05 10:38 885K 
[TXT]CDMZ01.6_asm.superscaf_track.txt2026-05-05 10:38 52K 
[ ]CDMZ01.7.asm2026-05-05 12:51 32K 
[ ]CDMZ01.7.assembly2026-05-05 12:54 310K 
[ ]CDMZ01.7.cprops2026-05-05 11:24 271K 
[ ]CDMZ01.7.hic2026-05-05 13:35 320M 
[TXT]CDMZ01.7_asm.scaffold_track.txt2026-05-05 12:54 886K 
[TXT]CDMZ01.7_asm.superscaf_track.txt2026-05-05 12:54 52K 
[ ]CDMZ01.8.asm2026-05-05 14:35 32K 
[ ]CDMZ01.8.assembly2026-05-05 14:38 310K 
[ ]CDMZ01.8.cprops2026-05-05 13:40 271K 
[ ]CDMZ01.8.hic2026-05-05 15:19 320M 
[TXT]CDMZ01.8_asm.scaffold_track.txt2026-05-05 14:38 886K 
[TXT]CDMZ01.8_asm.superscaf_track.txt2026-05-05 14:38 53K 
[ ]CDMZ01.9.asm2026-05-05 16:53 32K 
[ ]CDMZ01.9.assembly2026-05-05 16:57 310K 
[ ]CDMZ01.9.cprops2026-05-05 15:24 271K 
[ ]CDMZ01.9.hic2026-05-05 17:37 320M 
[TXT]CDMZ01.9_asm.scaffold_track.txt2026-05-05 16:57 887K 
[TXT]CDMZ01.9_asm.superscaf_track.txt2026-05-05 16:57 53K 
[ ]CDMZ01.10.asm2026-05-05 18:39 32K 
[ ]CDMZ01.10.assembly2026-05-05 18:43 310K 
[ ]CDMZ01.10.cprops2026-05-05 17:42 272K 
[ ]CDMZ01.10.hic2026-05-05 19:23 320M 
[TXT]CDMZ01.10_asm.scaffold_track.txt2026-05-05 18:43 887K 
[TXT]CDMZ01.10_asm.superscaf_track.txt2026-05-05 18:43 53K 
[ ]CDMZ01.11.asm2026-05-05 21:00 32K 
[ ]CDMZ01.11.assembly2026-05-05 21:04 310K 
[ ]CDMZ01.11.cprops2026-05-05 19:28 272K 
[ ]CDMZ01.11.hic2026-05-05 21:48 320M 
[TXT]CDMZ01.11_asm.scaffold_track.txt2026-05-05 21:04 887K 
[TXT]CDMZ01.11_asm.superscaf_track.txt2026-05-05 21:04 53K 
[ ]CDMZ01.12.cprops2026-05-05 21:53 272K 
[ ]CDMZ01.cprops2026-05-04 12:45 247K 
[TXT]CDMZ01.edits.txt2026-05-05 21:53 38K 
[TXT]CDMZ01.mnd.12.txt2026-05-05 22:03 42G 
[TXT]CDMZ01.mnd.txt2026-02-04 17:13 169G 
[ ]LICENSE2026-05-04 12:21 1.0K 
[TXT]README.md2026-05-04 12:21 8.7K 
[TXT]archive.CDMZ01.edits.at.step.1.txt2026-05-05 01:37 27K 
[TXT]archive.CDMZ01.edits.at.step.2.txt2026-05-05 03:33 32K 
[TXT]archive.CDMZ01.edits.at.step.3.txt2026-05-05 05:23 35K 
[TXT]archive.CDMZ01.edits.at.step.4.txt2026-05-05 07:11 36K 
[TXT]archive.CDMZ01.edits.at.step.5.txt2026-05-05 09:07 36K 
[TXT]archive.CDMZ01.edits.at.step.6.txt2026-05-05 11:24 37K 
[TXT]archive.CDMZ01.edits.at.step.7.txt2026-05-05 13:40 37K 
[TXT]archive.CDMZ01.edits.at.step.8.txt2026-05-05 15:24 37K 
[TXT]archive.CDMZ01.edits.at.step.9.txt2026-05-05 17:42 37K 
[TXT]archive.CDMZ01.edits.at.step.10.txt2026-05-05 19:28 38K 
[TXT]archive.CDMZ01.edits.at.step.11.txt2026-05-05 21:53 38K 
[ ]coverage_wide.at.step.0.wig2026-05-04 23:07 142K 
[ ]coverage_wide.at.step.1.wig2026-05-05 01:37 142K 
[ ]coverage_wide.at.step.2.wig2026-05-05 03:33 142K 
[ ]coverage_wide.at.step.3.wig2026-05-05 05:23 142K 
[ ]coverage_wide.at.step.4.wig2026-05-05 07:11 142K 
[ ]coverage_wide.at.step.5.wig2026-05-05 09:07 142K 
[ ]coverage_wide.at.step.6.wig2026-05-05 11:24 142K 
[ ]coverage_wide.at.step.7.wig2026-05-05 13:40 142K 
[ ]coverage_wide.at.step.8.wig2026-05-05 15:24 142K 
[ ]coverage_wide.at.step.9.wig2026-05-05 17:42 142K 
[ ]coverage_wide.at.step.10.wig2026-05-05 19:28 142K 
[ ]coverage_wide.at.step.11.wig2026-05-05 21:53 142K 
[DIR]data/2026-05-04 12:21 -  
[ ]depletion_score_narrow.at.step.0.wig2026-05-04 23:07 2.5M 
[ ]depletion_score_narrow.at.step.1.wig2026-05-05 01:37 2.5M 
[ ]depletion_score_narrow.at.step.2.wig2026-05-05 03:33 2.5M 
[ ]depletion_score_narrow.at.step.3.wig2026-05-05 05:23 2.5M 
[ ]depletion_score_narrow.at.step.4.wig2026-05-05 07:11 2.5M 
[ ]depletion_score_narrow.at.step.5.wig2026-05-05 09:07 2.5M 
[ ]depletion_score_narrow.at.step.6.wig2026-05-05 11:24 2.5M 
[ ]depletion_score_narrow.at.step.7.wig2026-05-05 13:40 2.5M 
[ ]depletion_score_narrow.at.step.8.wig2026-05-05 15:24 2.5M 
[ ]depletion_score_narrow.at.step.9.wig2026-05-05 17:42 2.5M 
[ ]depletion_score_narrow.at.step.10.wig2026-05-05 19:28 2.5M 
[ ]depletion_score_narrow.at.step.11.wig2026-05-05 21:53 2.5M 
[ ]depletion_score_wide.at.step.0.wig2026-05-04 23:04 132K 
[ ]depletion_score_wide.at.step.1.wig2026-05-05 01:34 132K 
[ ]depletion_score_wide.at.step.2.wig2026-05-05 03:29 132K 
[ ]depletion_score_wide.at.step.3.wig2026-05-05 05:19 124K 
[ ]depletion_score_wide.at.step.4.wig2026-05-05 07:08 132K 
[ ]depletion_score_wide.at.step.5.wig2026-05-05 09:03 117K 
[ ]depletion_score_wide.at.step.6.wig2026-05-05 11:20 132K 
[ ]depletion_score_wide.at.step.7.wig2026-05-05 13:36 132K 
[ ]depletion_score_wide.at.step.8.wig2026-05-05 15:21 132K 
[ ]depletion_score_wide.at.step.9.wig2026-05-05 17:39 132K 
[ ]depletion_score_wide.at.step.10.wig2026-05-05 19:25 132K 
[ ]depletion_score_wide.at.step.11.wig2026-05-05 21:49 132K 
[DIR]edit/2026-05-04 12:21 -  
[TXT]edits.for.step.1.txt2026-05-04 23:07 25K 
[TXT]edits.for.step.2.txt2026-05-05 01:37 6.2K 
[TXT]edits.for.step.3.txt2026-05-05 03:33 2.7K 
[TXT]edits.for.step.4.txt2026-05-05 05:23 1.3K 
[TXT]edits.for.step.5.txt2026-05-05 07:11 269  
[TXT]edits.for.step.6.txt2026-05-05 09:07 384  
[TXT]edits.for.step.7.txt2026-05-05 11:24 261  
[TXT]edits.for.step.8.txt2026-05-05 13:40 269  
[TXT]edits.for.step.9.txt2026-05-05 15:24 269  
[TXT]edits.for.step.10.txt2026-05-05 17:42 269  
[TXT]edits.for.step.11.txt2026-05-05 19:28 154  
[TXT]edits.for.step.12.txt2026-05-05 21:53 154  
[DIR]finalize/2026-05-04 12:21 -  
[TXT]h.double.sorted.confidence.step.1.txt2026-05-05 22:10 848M 
[TXT]h.double.sorted.confidence.step.2.txt2026-05-05 22:15 331M 
[TXT]h.double.sorted.confidence.step.3.txt2026-05-05 22:18 87M 
[TXT]h.double.sorted.confidence.step.4.txt2026-05-05 22:21 24M 
[TXT]h.double.sorted.confidence.step.5.txt2026-05-05 22:24 6.2M 
[TXT]h.dropouts.step.0.txt2026-05-05 22:03 2.1K 
[TXT]h.scaffolds.original.notation.step.0.txt2026-05-05 22:03 28K 
[TXT]h.scaffolds.original.notation.step.1.txt2026-05-05 22:11 29K 
[TXT]h.scaffolds.original.notation.step.2.txt2026-05-05 22:15 29K 
[TXT]h.scaffolds.original.notation.step.3.txt2026-05-05 22:18 30K 
[TXT]h.scaffolds.original.notation.step.4.txt2026-05-05 22:21 30K 
[TXT]h.scaffolds.original.notation.step.5.txt2026-05-05 22:24 30K 
[TXT]h.scaffolds.step.1.txt2026-05-05 22:10 24K 
[TXT]h.scaffolds.step.2.txt2026-05-05 22:15 9.7K 
[TXT]h.scaffolds.step.3.txt2026-05-05 22:18 3.4K 
[TXT]h.scaffolds.step.4.txt2026-05-05 22:21 1.6K 
[TXT]h.scaffolds.step.5.txt2026-05-05 22:24 660  
[TXT]h.scores.step.1.txt2026-05-05 22:07 373M 
[TXT]h.scores.step.2.txt2026-05-05 22:14 146M 
[TXT]h.scores.step.3.txt2026-05-05 22:18 38M 
[TXT]h.scores.step.4.txt2026-05-05 22:21 11M 
[TXT]h.scores.step.5.txt2026-05-05 22:24 2.8M 
[TXT]h.scores.step.6.txt2026-05-05 22:24 0  
[DIR]lift/2026-05-04 12:21 -  
[DIR]merge/2026-05-04 12:21 -  
[ ]mismatch_narrow.at.step.0.bed2026-05-04 23:07 3.9K 
[ ]mismatch_narrow.at.step.1.bed2026-05-05 01:37 1.3K 
[ ]mismatch_narrow.at.step.2.bed2026-05-05 03:33 1.1K 
[ ]mismatch_narrow.at.step.3.bed2026-05-05 05:23 949  
[ ]mismatch_narrow.at.step.4.bed2026-05-05 07:11 908  
[ ]mismatch_narrow.at.step.5.bed2026-05-05 09:07 920  
[ ]mismatch_narrow.at.step.6.bed2026-05-05 11:24 914  
[ ]mismatch_narrow.at.step.7.bed2026-05-05 13:40 833  
[ ]mismatch_narrow.at.step.8.bed2026-05-05 15:24 804  
[ ]mismatch_narrow.at.step.9.bed2026-05-05 17:42 746  
[ ]mismatch_narrow.at.step.10.bed2026-05-05 19:28 804  
[ ]mismatch_narrow.at.step.11.bed2026-05-05 21:53 833  
[ ]mismatch_wide.at.step.0.bed2026-05-04 23:04 3.6K 
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[ ]mismatch_wide.at.step.3.bed2026-05-05 05:19 514  
[ ]mismatch_wide.at.step.4.bed2026-05-05 07:08 589  
[ ]mismatch_wide.at.step.5.bed2026-05-05 09:03 572  
[ ]mismatch_wide.at.step.6.bed2026-05-05 11:20 508  
[ ]mismatch_wide.at.step.7.bed2026-05-05 13:36 427  
[ ]mismatch_wide.at.step.8.bed2026-05-05 15:21 456  
[ ]mismatch_wide.at.step.9.bed2026-05-05 17:39 427  
[ ]mismatch_wide.at.step.10.bed2026-05-05 19:25 456  
[ ]mismatch_wide.at.step.11.bed2026-05-05 21:49 485  
[TXT]mismatches.at.step.0.txt2026-05-04 23:07 12K 
[TXT]mismatches.at.step.1.txt2026-05-05 01:37 3.6K 
[TXT]mismatches.at.step.2.txt2026-05-05 03:33 3.5K 
[TXT]mismatches.at.step.3.txt2026-05-05 05:23 2.3K 
[TXT]mismatches.at.step.4.txt2026-05-05 07:11 2.4K 
[TXT]mismatches.at.step.5.txt2026-05-05 09:07 2.5K 
[TXT]mismatches.at.step.6.txt2026-05-05 11:24 2.3K 
[TXT]mismatches.at.step.7.txt2026-05-05 13:40 1.9K 
[TXT]mismatches.at.step.8.txt2026-05-05 15:24 1.8K 
[TXT]mismatches.at.step.9.txt2026-05-05 17:42 1.8K 
[TXT]mismatches.at.step.10.txt2026-05-05 19:28 1.9K 
[TXT]mismatches.at.step.11.txt2026-05-05 21:53 1.9K 
[DIR]polish/2026-05-04 12:21 -  
[ ]repeats_wide.at.step.0.bed2026-05-04 23:07 1.0K 
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[ ]repeats_wide.at.step.2.bed2026-05-05 03:33 574  
[ ]repeats_wide.at.step.3.bed2026-05-05 05:23 580  
[ ]repeats_wide.at.step.4.bed2026-05-05 07:11 638  
[ ]repeats_wide.at.step.5.bed2026-05-05 09:07 522  
[ ]repeats_wide.at.step.6.bed2026-05-05 11:24 609  
[ ]repeats_wide.at.step.7.bed2026-05-05 13:40 580  
[ ]repeats_wide.at.step.8.bed2026-05-05 15:24 522  
[ ]repeats_wide.at.step.9.bed2026-05-05 17:42 551  
[ ]repeats_wide.at.step.10.bed2026-05-05 19:28 522  
[ ]repeats_wide.at.step.11.bed2026-05-05 21:53 580  
[TXT]run-asm-pipeline-post-review.sh2026-05-04 12:21 11K 
[TXT]run-asm-pipeline.sh2026-05-04 12:21 44K 
[DIR]scaffold/2026-05-04 12:21 -  
[DIR]seal/2026-05-04 12:21 -  
[DIR]split/2026-05-04 12:21 -  
[DIR]split_chrom_aware/2026-05-04 12:21 -  
[DIR]supp/2026-05-04 12:21 -  
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[TXT]suspect_2D.at.step.0.txt2026-05-04 23:07 37K 
[TXT]suspect_2D.at.step.1.txt2026-05-05 01:37 9.8K 
[TXT]suspect_2D.at.step.2.txt2026-05-05 03:33 6.1K 
[TXT]suspect_2D.at.step.3.txt2026-05-05 05:23 3.6K 
[TXT]suspect_2D.at.step.4.txt2026-05-05 07:11 2.6K 
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[TXT]suspect_2D.at.step.6.txt2026-05-05 11:24 2.5K 
[TXT]suspect_2D.at.step.7.txt2026-05-05 13:40 2.1K 
[TXT]suspect_2D.at.step.8.txt2026-05-05 15:24 2.0K 
[TXT]suspect_2D.at.step.9.txt2026-05-05 17:42 2.0K 
[TXT]suspect_2D.at.step.10.txt2026-05-05 19:28 2.0K 
[TXT]suspect_2D.at.step.11.txt2026-05-05 21:53 2.0K 
[DIR]utils/2026-05-04 12:21 -  
[DIR]visualize/2026-05-04 12:21 -  
[ ]z2026-05-04 12:22 346  
[ ]zJuC100.1.err2026-05-04 12:45 0  
[ ]zJuC100.1.out2026-05-05 22:24 47K 
[ ]zJuC100.1.sbatch2026-05-04 12:22 563  
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