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Rscript ~/code/spp/spp_package/run_spp.R -c=Dps_2.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=Dps_2.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=Fis_1.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=Fis_1.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=Fis_2.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=Fis_2.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=GyrA_1.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=GyrA_1.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=GyrA_2.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=GyrA_2.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=GyrB_1.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=GyrB_1.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=GyrB_2.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=GyrB_2.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=H-NS_1.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=H-NS_1.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=H-NS_2.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=H-NS_2.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=HupA_1.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=HupA_1.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=HupA_2.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=HupA_2.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=HupB_1.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=HupB_1.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=HupB_2.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=HupB_2.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=InfA_1.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=InfA_1.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=InfA_2.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=InfA_2.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=MukB_1.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=MukB_1.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=MukB_2.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=MukB_2.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=RdgC_1.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=RdgC_1.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=RdgC_2.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=RdgC_2.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=Rob_1.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=Rob_1.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=Rob_2.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=Rob_2.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=StpA_1.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=StpA_1.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=StpA_2.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=StpA_2.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=TopA_1.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=TopA_1.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=TopA_2.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=TopA_2.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=Tus_1.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=Tus_1.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=Tus_2.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=Tus_2.1x36mers.QC