python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- cysB_taur_1_ChIPexo.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/GCA_000005845.2_ASM584v2_genomic.chrom.sizes cysB_taur_1_ChIPexo.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- cysB_taur_1_ChIPexo.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/GCA_000005845.2_ASM584v2_genomic.chrom.sizes cysB_taur_1_ChIPexo.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- cysB_taur_2_ChIPexo.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/GCA_000005845.2_ASM584v2_genomic.chrom.sizes cysB_taur_2_ChIPexo.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- cysB_taur_2_ChIPexo.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/GCA_000005845.2_ASM584v2_genomic.chrom.sizes cysB_taur_2_ChIPexo.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- metJ_meio_1_ChIPexo.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/GCA_000005845.2_ASM584v2_genomic.chrom.sizes metJ_meio_1_ChIPexo.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- metJ_meio_1_ChIPexo.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/GCA_000005845.2_ASM584v2_genomic.chrom.sizes metJ_meio_1_ChIPexo.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- metJ_meio_2_ChIPexo.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/GCA_000005845.2_ASM584v2_genomic.chrom.sizes metJ_meio_2_ChIPexo.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- metJ_meio_2_ChIPexo.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/GCA_000005845.2_ASM584v2_genomic.chrom.sizes metJ_meio_2_ChIPexo.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue