Index of /kundaje/marinovg/oak/papers/2025_CtoT_E_coli-SMF/2025-02-14-ChIP-exo-datasets/11-E.coli-Yaf-Yba-Ybi-Ydd-Yhe-Yia-Yie-RpoB-GSE111095

[ICO]NameLast modifiedSizeDescription
[PARENTDIR]Parent Directory  -  
[DIR]RpoB_glc1_ChIPexo.1x36mers.unique.GPS/2025-02-22 05:14 -  
[TXT]RpoB_glc1_ChIPexo.SE.a.5p.counts.minus.bigWig2025-02-17 04:14 3.8M 
[TXT]RpoB_glc1_ChIPexo.SE.a.5p.counts.plus.bigWig2025-02-17 04:14 3.7M 
[DIR]RpoB_glc1_ChIPexo.SE.a.GPS/2025-03-21 17:33 -  
[TXT]RpoB_glc1_ChIPexo.SE.a.bigWig2025-02-17 04:13 11M 
[TXT]RpoB_glc1_ChIPexo.SE.a.minus.bigWig2025-02-17 04:14 7.5M 
[TXT]RpoB_glc1_ChIPexo.SE.a.plus.bigWig2025-02-17 04:14 7.5M 
[ ]RpoB_glc1_ChIPexo.fastq.lines2025-02-16 01:47 9  
[DIR]RpoB_glc2_ChIPexo.1x36mers.unique.GPS/2025-02-22 05:16 -  
[TXT]RpoB_glc2_ChIPexo.SE.a.5p.counts.minus.bigWig2025-02-17 04:14 3.6M 
[TXT]RpoB_glc2_ChIPexo.SE.a.5p.counts.plus.bigWig2025-02-17 04:14 3.6M 
[DIR]RpoB_glc2_ChIPexo.SE.a.GPS/2025-03-21 17:33 -  
[TXT]RpoB_glc2_ChIPexo.SE.a.bigWig2025-02-17 04:13 11M 
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[ ]RpoB_glc2_ChIPexo.fastq.lines2025-02-16 01:47 9  
[ ]SAMstats-1x36mers.files2025-02-15 07:14 1.5K 
[TXT]SAMstats-1x36mers.sh2025-02-15 07:14 9.9K 
[ ]SAMstats-1x36mers.table2025-02-17 04:08 1.7K 
[ ]SAMstats-2x36mers.files2025-02-15 07:14 1.5K 
[ ]SAMstats-files.tar.gz2025-02-17 14:23 1.2K 
[DIR]YafC_glc1_ChIPexo.1x36mers.unique.GPS/2025-02-22 05:11 -  
[TXT]YafC_glc1_ChIPexo.SE.a.5p.counts.minus.bigWig2025-02-17 04:14 1.4M 
[TXT]YafC_glc1_ChIPexo.SE.a.5p.counts.plus.bigWig2025-02-17 04:14 1.4M 
[DIR]YafC_glc1_ChIPexo.SE.a.GPS/2025-03-21 17:33 -  
[TXT]YafC_glc1_ChIPexo.SE.a.bigWig2025-02-17 04:13 4.3M 
[TXT]YafC_glc1_ChIPexo.SE.a.minus.bigWig2025-02-17 04:17 2.4M 
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[ ]YafC_glc1_ChIPexo.fastq.lines2025-02-16 01:47 9  
[DIR]YafC_glc2_ChIPexo.1x36mers.unique.GPS/2025-02-22 05:13 -  
[TXT]YafC_glc2_ChIPexo.SE.a.5p.counts.minus.bigWig2025-02-17 04:14 2.0M 
[TXT]YafC_glc2_ChIPexo.SE.a.5p.counts.plus.bigWig2025-02-17 04:14 2.0M 
[DIR]YafC_glc2_ChIPexo.SE.a.GPS/2025-03-21 17:33 -  
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[DIR]YbaO_glc1_ChIPexo.1x36mers.unique.GPS/2025-02-22 05:12 -  
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[DIR]YbaO_glc2_ChIPexo.1x36mers.unique.GPS/2025-02-22 05:22 -  
[TXT]YbaO_glc2_ChIPexo.SE.a.5p.counts.minus.bigWig2025-02-17 04:14 3.3M 
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[DIR]YbaO_glc2_ChIPexo.SE.a.GPS/2025-03-21 17:33 -  
[TXT]YbaO_glc2_ChIPexo.SE.a.bigWig2025-02-17 04:13 11M 
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[DIR]YbaQ_glc1_ChIPexo.1x36mers.unique.GPS/2025-02-22 05:23 -  
[TXT]YbaQ_glc1_ChIPexo.SE.a.5p.counts.minus.bigWig2025-02-17 04:14 3.8M 
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[DIR]YbaQ_glc1_ChIPexo.SE.a.GPS/2025-03-21 17:32 -  
[TXT]YbaQ_glc1_ChIPexo.SE.a.bigWig2025-02-17 04:13 13M 
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[DIR]YbaQ_glc2_ChIPexo.1x36mers.unique.GPS/2025-02-22 05:25 -  
[TXT]YbaQ_glc2_ChIPexo.SE.a.5p.counts.minus.bigWig2025-02-17 04:14 4.7M 
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[DIR]YbaQ_glc2_ChIPexo.SE.a.GPS/2025-03-21 17:32 -  
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[DIR]YbiH_glc1_ChIPexo.1x36mers.unique.GPS/2025-02-22 05:23 -  
[TXT]YbiH_glc1_ChIPexo.SE.a.5p.counts.minus.bigWig2025-02-17 04:14 2.9M 
[TXT]YbiH_glc1_ChIPexo.SE.a.5p.counts.plus.bigWig2025-02-17 04:14 2.9M 
[DIR]YbiH_glc1_ChIPexo.SE.a.GPS/2025-03-21 17:32 -  
[TXT]YbiH_glc1_ChIPexo.SE.a.bigWig2025-02-17 04:13 9.4M 
[TXT]YbiH_glc1_ChIPexo.SE.a.minus.bigWig2025-02-17 04:14 5.4M 
[TXT]YbiH_glc1_ChIPexo.SE.a.plus.bigWig2025-02-17 04:14 5.4M 
[ ]YbiH_glc1_ChIPexo.fastq.lines2025-02-16 01:47 9  
[DIR]Ybih_glc2_ChIPexo.1x36mers.unique.GPS/2025-02-22 05:21 -  
[TXT]Ybih_glc2_ChIPexo.SE.a.5p.counts.minus.bigWig2025-02-17 04:14 1.8M 
[TXT]Ybih_glc2_ChIPexo.SE.a.5p.counts.plus.bigWig2025-02-17 04:14 1.8M 
[DIR]Ybih_glc2_ChIPexo.SE.a.GPS/2025-03-21 17:32 -  
[TXT]Ybih_glc2_ChIPexo.SE.a.bigWig2025-02-17 04:13 5.8M 
[TXT]Ybih_glc2_ChIPexo.SE.a.minus.bigWig2025-02-17 04:14 2.8M 
[TXT]Ybih_glc2_ChIPexo.SE.a.plus.bigWig2025-02-17 04:14 2.8M 
[ ]Ybih_glc2_ChIPexo.fastq.lines2025-02-16 01:47 8  
[DIR]YdcI_ace1_ChIPexp.1x36mers.unique.GPS/2025-02-22 05:22 -  
[TXT]YdcI_ace1_ChIPexp.SE.a.5p.counts.minus.bigWig2025-02-17 04:14 1.9M 
[TXT]YdcI_ace1_ChIPexp.SE.a.5p.counts.plus.bigWig2025-02-17 04:14 1.9M 
[DIR]YdcI_ace1_ChIPexp.SE.a.GPS/2025-03-21 17:32 -  
[TXT]YdcI_ace1_ChIPexp.SE.a.bigWig2025-02-17 04:13 6.0M 
[TXT]YdcI_ace1_ChIPexp.SE.a.minus.bigWig2025-02-17 04:14 2.9M 
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[DIR]YdcI_ace2_ChIPexo.1x36mers.unique.GPS/2025-02-22 05:24 -  
[TXT]YdcI_ace2_ChIPexo.SE.a.5p.counts.minus.bigWig2025-02-17 04:14 1.8M 
[TXT]YdcI_ace2_ChIPexo.SE.a.5p.counts.plus.bigWig2025-02-17 04:14 1.8M 
[DIR]YdcI_ace2_ChIPexo.SE.a.GPS/2025-03-21 17:32 -  
[TXT]YdcI_ace2_ChIPexo.SE.a.bigWig2025-02-17 04:13 5.6M 
[TXT]YdcI_ace2_ChIPexo.SE.a.minus.bigWig2025-02-17 04:14 2.7M 
[TXT]YdcI_ace2_ChIPexo.SE.a.plus.bigWig2025-02-17 04:14 2.7M 
[ ]YdcI_ace2_ChIPexo.fastq.lines2025-02-16 01:47 9  
[DIR]YdcI_glc1_ChIPexo.1x36mers.unique.GPS/2025-02-22 05:32 -  
[TXT]YdcI_glc1_ChIPexo.SE.a.5p.counts.minus.bigWig2025-02-17 04:14 3.8M 
[TXT]YdcI_glc1_ChIPexo.SE.a.5p.counts.plus.bigWig2025-02-17 04:14 3.8M 
[DIR]YdcI_glc1_ChIPexo.SE.a.GPS/2025-03-21 17:32 -  
[TXT]YdcI_glc1_ChIPexo.SE.a.bigWig2025-02-17 04:13 12M 
[TXT]YdcI_glc1_ChIPexo.SE.a.minus.bigWig2025-02-17 04:14 7.6M 
[TXT]YdcI_glc1_ChIPexo.SE.a.plus.bigWig2025-02-17 04:14 7.6M 
[ ]YdcI_glc1_ChIPexo.fastq.lines2025-02-16 01:47 9  
[DIR]YdcI_glc2_ChIPexo.1x36mers.unique.GPS/2025-02-22 05:31 -  
[TXT]YdcI_glc2_ChIPexo.SE.a.5p.counts.minus.bigWig2025-02-17 04:14 3.5M 
[TXT]YdcI_glc2_ChIPexo.SE.a.5p.counts.plus.bigWig2025-02-17 04:14 3.5M 
[DIR]YdcI_glc2_ChIPexo.SE.a.GPS/2025-03-21 17:32 -  
[TXT]YdcI_glc2_ChIPexo.SE.a.bigWig2025-02-17 04:13 11M 
[TXT]YdcI_glc2_ChIPexo.SE.a.minus.bigWig2025-02-17 04:14 6.9M 
[TXT]YdcI_glc2_ChIPexo.SE.a.plus.bigWig2025-02-17 04:14 6.9M 
[ ]YdcI_glc2_ChIPexo.fastq.lines2025-02-16 01:47 9  
[DIR]YdcI_ph5_1_ChIPexo.1x36mers.unique.GPS/2025-02-22 05:30 -  
[TXT]YdcI_ph5_1_ChIPexo.SE.a.5p.counts.minus.bigWig2025-02-17 04:14 3.6M 
[TXT]YdcI_ph5_1_ChIPexo.SE.a.5p.counts.plus.bigWig2025-02-17 04:14 3.6M 
[DIR]YdcI_ph5_1_ChIPexo.SE.a.GPS/2025-03-21 17:33 -  
[TXT]YdcI_ph5_1_ChIPexo.SE.a.bigWig2025-02-17 04:13 12M 
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[ ]YdcI_ph5_1_ChIPexo.fastq.lines2025-02-16 01:47 9  
[DIR]YdcI_ph5_2_ChIPexo.1x36mers.unique.GPS/2025-02-22 05:30 -  
[TXT]YdcI_ph5_2_ChIPexo.SE.a.5p.counts.minus.bigWig2025-02-17 04:14 3.2M 
[TXT]YdcI_ph5_2_ChIPexo.SE.a.5p.counts.plus.bigWig2025-02-17 04:14 3.2M 
[DIR]YdcI_ph5_2_ChIPexo.SE.a.GPS/2025-03-21 17:33 -  
[TXT]YdcI_ph5_2_ChIPexo.SE.a.bigWig2025-02-17 04:13 10M 
[TXT]YdcI_ph5_2_ChIPexo.SE.a.minus.bigWig2025-02-17 04:14 6.1M 
[TXT]YdcI_ph5_2_ChIPexo.SE.a.plus.bigWig2025-02-17 04:14 6.1M 
[ ]YdcI_ph5_2_ChIPexo.fastq.lines2025-02-16 01:47 9  
[DIR]YdcI_ph8_1_ChIPexo.1x36mers.unique.GPS/2025-02-22 05:31 -  
[TXT]YdcI_ph8_1_ChIPexo.SE.a.5p.counts.minus.bigWig2025-02-17 04:14 3.0M 
[TXT]YdcI_ph8_1_ChIPexo.SE.a.5p.counts.plus.bigWig2025-02-17 04:14 2.9M 
[DIR]YdcI_ph8_1_ChIPexo.SE.a.GPS/2025-03-21 17:33 -  
[TXT]YdcI_ph8_1_ChIPexo.SE.a.bigWig2025-02-17 04:13 9.3M 
[TXT]YdcI_ph8_1_ChIPexo.SE.a.minus.bigWig2025-02-17 04:14 5.6M 
[TXT]YdcI_ph8_1_ChIPexo.SE.a.plus.bigWig2025-02-17 04:14 5.5M 
[ ]YdcI_ph8_1_ChIPexo.fastq.lines2025-02-16 01:47 9  
[DIR]YdcI_ph8_2_ChIPexo.1x36mers.unique.GPS/2025-02-22 05:30 -  
[TXT]YdcI_ph8_2_ChIPexo.SE.a.5p.counts.minus.bigWig2025-02-17 04:14 3.1M 
[TXT]YdcI_ph8_2_ChIPexo.SE.a.5p.counts.plus.bigWig2025-02-17 04:14 3.1M 
[DIR]YdcI_ph8_2_ChIPexo.SE.a.GPS/2025-03-21 17:33 -  
[TXT]YdcI_ph8_2_ChIPexo.SE.a.bigWig2025-02-17 04:13 9.9M 
[TXT]YdcI_ph8_2_ChIPexo.SE.a.minus.bigWig2025-02-17 04:14 5.9M 
[TXT]YdcI_ph8_2_ChIPexo.SE.a.plus.bigWig2025-02-17 04:14 5.9M 
[ ]YdcI_ph8_2_ChIPexo.fastq.lines2025-02-16 01:47 9  
[DIR]YddM_glc1_ChIPexo.1x36mers.unique.GPS/2025-02-22 05:31 -  
[TXT]YddM_glc1_ChIPexo.SE.a.5p.counts.minus.bigWig2025-02-17 04:14 3.9M 
[TXT]YddM_glc1_ChIPexo.SE.a.5p.counts.plus.bigWig2025-02-17 04:14 3.9M 
[DIR]YddM_glc1_ChIPexo.SE.a.GPS/2025-03-21 17:33 -  
[TXT]YddM_glc1_ChIPexo.SE.a.bigWig2025-02-17 04:13 13M 
[TXT]YddM_glc1_ChIPexo.SE.a.minus.bigWig2025-02-17 04:14 8.1M 
[TXT]YddM_glc1_ChIPexo.SE.a.plus.bigWig2025-02-17 04:14 8.1M 
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[DIR]YddM_glc2_ChIPexo.1x36mers.unique.GPS/2025-02-22 05:30 -  
[TXT]YddM_glc2_ChIPexo.SE.a.5p.counts.minus.bigWig2025-02-17 04:14 2.9M 
[TXT]YddM_glc2_ChIPexo.SE.a.5p.counts.plus.bigWig2025-02-17 04:14 2.9M 
[DIR]YddM_glc2_ChIPexo.SE.a.GPS/2025-03-21 17:33 -  
[TXT]YddM_glc2_ChIPexo.SE.a.bigWig2025-02-17 04:13 9.7M 
[TXT]YddM_glc2_ChIPexo.SE.a.minus.bigWig2025-02-17 04:14 5.8M 
[TXT]YddM_glc2_ChIPexo.SE.a.plus.bigWig2025-02-17 04:14 5.8M 
[ ]YddM_glc2_ChIPexo.fastq.lines2025-02-16 01:47 9  
[DIR]YeiE_glc1_ChIPexo.1x36mers.unique.GPS/2025-02-22 05:31 -  
[TXT]YeiE_glc1_ChIPexo.SE.a.5p.counts.minus.bigWig2025-02-17 04:14 4.7M 
[TXT]YeiE_glc1_ChIPexo.SE.a.5p.counts.plus.bigWig2025-02-17 04:14 4.7M 
[DIR]YeiE_glc1_ChIPexo.SE.a.GPS/2025-03-21 17:33 -  
[TXT]YeiE_glc1_ChIPexo.SE.a.bigWig2025-02-17 04:13 15M 
[TXT]YeiE_glc1_ChIPexo.SE.a.minus.bigWig2025-02-17 04:14 10M 
[TXT]YeiE_glc1_ChIPexo.SE.a.plus.bigWig2025-02-17 04:14 10M 
[ ]YeiE_glc1_ChIPexo.fastq.lines2025-02-16 01:47 9  
[DIR]YeiE_glc2_ChIPexo.1x36mers.unique.GPS/2025-02-22 05:32 -  
[TXT]YeiE_glc2_ChIPexo.SE.a.5p.counts.minus.bigWig2025-02-17 04:14 5.1M 
[TXT]YeiE_glc2_ChIPexo.SE.a.5p.counts.plus.bigWig2025-02-17 04:14 5.1M 
[DIR]YeiE_glc2_ChIPexo.SE.a.GPS/2025-03-21 17:33 -  
[TXT]YeiE_glc2_ChIPexo.SE.a.bigWig2025-02-17 04:13 16M 
[TXT]YeiE_glc2_ChIPexo.SE.a.minus.bigWig2025-02-17 04:14 11M 
[TXT]YeiE_glc2_ChIPexo.SE.a.plus.bigWig2025-02-17 04:14 11M 
[ ]YeiE_glc2_ChIPexo.fastq.lines2025-02-16 01:47 9  
[DIR]YheO_glc1_ChIPexo.1x36mers.unique.GPS/2025-02-22 05:31 -  
[TXT]YheO_glc1_ChIPexo.SE.a.5p.counts.minus.bigWig2025-02-17 04:14 3.3M 
[TXT]YheO_glc1_ChIPexo.SE.a.5p.counts.plus.bigWig2025-02-17 04:14 3.3M 
[DIR]YheO_glc1_ChIPexo.SE.a.GPS/2025-03-21 17:33 -  
[TXT]YheO_glc1_ChIPexo.SE.a.bigWig2025-02-17 04:14 11M 
[TXT]YheO_glc1_ChIPexo.SE.a.minus.bigWig2025-02-17 04:14 6.5M 
[TXT]YheO_glc1_ChIPexo.SE.a.plus.bigWig2025-02-17 04:14 6.5M 
[ ]YheO_glc1_ChIPexo.fastq.lines2025-02-16 01:47 9  
[DIR]YheO_glc2_ChIPexo.1x36mers.unique.GPS/2025-02-22 05:31 -  
[TXT]YheO_glc2_ChIPexo.SE.a.5p.counts.minus.bigWig2025-02-17 04:14 3.0M 
[TXT]YheO_glc2_ChIPexo.SE.a.5p.counts.plus.bigWig2025-02-17 04:14 3.0M 
[DIR]YheO_glc2_ChIPexo.SE.a.GPS/2025-03-21 17:33 -  
[TXT]YheO_glc2_ChIPexo.SE.a.bigWig2025-02-17 04:14 10M 
[TXT]YheO_glc2_ChIPexo.SE.a.minus.bigWig2025-02-17 04:14 6.0M 
[TXT]YheO_glc2_ChIPexo.SE.a.plus.bigWig2025-02-17 04:14 6.0M 
[ ]YheO_glc2_ChIPexo.fastq.lines2025-02-16 01:47 9  
[DIR]YiaJ_glc1_ChIPexo.1x36mers.unique.GPS/2025-02-22 05:42 -  
[TXT]YiaJ_glc1_ChIPexo.SE.a.5p.counts.minus.bigWig2025-02-17 04:14 4.6M 
[TXT]YiaJ_glc1_ChIPexo.SE.a.5p.counts.plus.bigWig2025-02-17 04:14 4.6M 
[DIR]YiaJ_glc1_ChIPexo.SE.a.GPS/2025-03-21 17:33 -  
[TXT]YiaJ_glc1_ChIPexo.SE.a.bigWig2025-02-17 04:14 15M 
[TXT]YiaJ_glc1_ChIPexo.SE.a.minus.bigWig2025-02-17 04:14 9.4M 
[TXT]YiaJ_glc1_ChIPexo.SE.a.plus.bigWig2025-02-17 04:14 9.4M 
[ ]YiaJ_glc1_ChIPexo.fastq.lines2025-02-16 01:47 9  
[DIR]YiaJ_glc2_ChIPexo.1x36mers.unique.GPS/2025-02-22 05:41 -  
[TXT]YiaJ_glc2_ChIPexo.SE.a.5p.counts.minus.bigWig2025-02-17 04:14 3.6M 
[TXT]YiaJ_glc2_ChIPexo.SE.a.5p.counts.plus.bigWig2025-02-17 04:14 3.5M 
[DIR]YiaJ_glc2_ChIPexo.SE.a.GPS/2025-03-21 17:33 -  
[TXT]YiaJ_glc2_ChIPexo.SE.a.bigWig2025-02-17 04:14 12M 
[TXT]YiaJ_glc2_ChIPexo.SE.a.minus.bigWig2025-02-17 04:14 6.9M 
[TXT]YiaJ_glc2_ChIPexo.SE.a.plus.bigWig2025-02-17 04:14 6.9M 
[ ]YiaJ_glc2_ChIPexo.fastq.lines2025-02-16 01:49 9  
[DIR]YieP_glc1_ChIPexo.1x36mers.unique.GPS/2025-02-22 05:42 -  
[TXT]YieP_glc1_ChIPexo.SE.a.5p.counts.minus.bigWig2025-02-17 04:14 4.1M 
[TXT]YieP_glc1_ChIPexo.SE.a.5p.counts.plus.bigWig2025-02-17 04:14 4.1M 
[DIR]YieP_glc1_ChIPexo.SE.a.GPS/2025-03-21 17:33 -  
[TXT]YieP_glc1_ChIPexo.SE.a.bigWig2025-02-17 04:14 14M 
[TXT]YieP_glc1_ChIPexo.SE.a.minus.bigWig2025-02-17 04:14 8.4M 
[TXT]YieP_glc1_ChIPexo.SE.a.plus.bigWig2025-02-17 04:14 8.4M 
[ ]YieP_glc1_ChIPexo.fastq.lines2025-02-16 01:47 9  
[DIR]YieP_glc2_ChIPexo.1x36mers.unique.GPS/2025-02-22 05:41 -  
[TXT]YieP_glc2_ChIPexo.SE.a.5p.counts.minus.bigWig2025-02-17 04:14 4.0M 
[TXT]YieP_glc2_ChIPexo.SE.a.5p.counts.plus.bigWig2025-02-17 04:14 4.0M 
[DIR]YieP_glc2_ChIPexo.SE.a.GPS/2025-03-21 17:33 -  
[TXT]YieP_glc2_ChIPexo.SE.a.bigWig2025-02-17 04:14 13M 
[TXT]YieP_glc2_ChIPexo.SE.a.minus.bigWig2025-02-17 04:14 8.3M 
[TXT]YieP_glc2_ChIPexo.SE.a.plus.bigWig2025-02-17 04:14 8.2M 
[ ]YieP_glc2_ChIPexo.fastq.lines2025-02-16 01:47 9  
[ ]config2025-02-15 07:14 9.7K 
[TXT]countlines.sh2025-02-15 07:14 2.0K 
[TXT]make5pwiggle-1x36mers.sh2025-02-15 07:14 19K 
[TXT]makewiggle-1x36mers.sh2025-02-15 07:14 8.5K 
[TXT]makewiggle-stranded-1x36mers.sh2025-02-15 07:14 18K 
[TXT]map-1x36mers.sh2025-02-16 03:08 42K 
[TXT]run_spp.sh2025-02-15 07:14 4.0K 
[TXT]samtools-index-1x36mers.sh2025-02-15 07:14 6.1K 
[TXT]wget.sh2025-02-15 07:13 2.9K 
[TXT]wigtobigwig-wig-1x36mers.sh2025-02-15 07:14 8.0K 
[TXT]wigtobigwig-wigplusminus-1x36mers.sh2025-02-15 07:14 17K 
[TXT]wigtobigwig-wigplusminus5p-1x36mers.sh2025-02-15 07:14 18K 
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