Rscript ~/code/spp/spp_package/run_spp.R -c=ChIPExo-ArcA_ArcA8myc_glucose_NH4Cl_anaerobic_1_anti-myc.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=ChIPExo-ArcA_ArcA8myc_glucose_NH4Cl_anaerobic_1_anti-myc.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=ChIPExo-ArcA_ArcA8myc_glucose_NH4Cl_anaerobic_2_anti-myc.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=ChIPExo-ArcA_ArcA8myc_glucose_NH4Cl_anaerobic_2_anti-myc.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=ChIPExo-ArcA_ArcA8myc_glucose_NH4Cl_anaerobic_3_anti-myc.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=ChIPExo-ArcA_ArcA8myc_glucose_NH4Cl_anaerobic_3_anti-myc.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=ChIPExo-Crp_delAr1_glycerol_NH4Cl_O2_1_anti-crp.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=ChIPExo-Crp_delAr1_glycerol_NH4Cl_O2_1_anti-crp.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=ChIPExo-Crp_delAr1_glycerol_NH4Cl_O2_2_anti-crp.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=ChIPExo-Crp_delAr1_glycerol_NH4Cl_O2_2_anti-crp.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=ChIPExo-Crp_delAr1_glycerol_NH4Cl_O2_3_anti-crp.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=ChIPExo-Crp_delAr1_glycerol_NH4Cl_O2_3_anti-crp.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=ChIPExo-Crp_delAr1delAr2_glycerol_NH4Cl_O2_1_anti-crp.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=ChIPExo-Crp_delAr1delAr2_glycerol_NH4Cl_O2_1_anti-crp.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=ChIPExo-Crp_delAr1delAr2_glycerol_NH4Cl_O2_2_anti-crp.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=ChIPExo-Crp_delAr1delAr2_glycerol_NH4Cl_O2_2_anti-crp.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=ChIPExo-Crp_delAr1delAr2_glycerol_NH4Cl_O2_3_anti-crp.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=ChIPExo-Crp_delAr1delAr2_glycerol_NH4Cl_O2_3_anti-crp.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=ChIPExo-Crp_delAr2_glycerol_NH4Cl_O2_1_anti-crp.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=ChIPExo-Crp_delAr2_glycerol_NH4Cl_O2_1_anti-crp.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=ChIPExo-Crp_delAr2_glycerol_NH4Cl_O2_2_anti-crp.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=ChIPExo-Crp_delAr2_glycerol_NH4Cl_O2_2_anti-crp.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=ChIPExo-Crp_delAr2_glycerol_NH4Cl_O2_3_anti-crp.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=ChIPExo-Crp_delAr2_glycerol_NH4Cl_O2_3_anti-crp.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=ChIPExo-Crp_delta-crp_glycerol_NH4Cl_O2_1_anti-crp.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=ChIPExo-Crp_delta-crp_glycerol_NH4Cl_O2_1_anti-crp.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=ChIPExo-Crp_delta-crp_glycerol_NH4Cl_O2_2_anti-crp.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=ChIPExo-Crp_delta-crp_glycerol_NH4Cl_O2_2_anti-crp.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=ChIPExo-Crp_delta-crp_glycerol_NH4Cl_O2_3_anti-crp.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=ChIPExo-Crp_delta-crp_glycerol_NH4Cl_O2_3_anti-crp.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=ChIPExo-Crp_wt_fructose_NH4Cl_O2_1_anti-crp.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=ChIPExo-Crp_wt_fructose_NH4Cl_O2_1_anti-crp.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=ChIPExo-Crp_wt_fructose_NH4Cl_O2_2_anti-crp.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=ChIPExo-Crp_wt_fructose_NH4Cl_O2_2_anti-crp.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=ChIPExo-Crp_wt_fructose_NH4Cl_O2_3_anti-crp.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=ChIPExo-Crp_wt_fructose_NH4Cl_O2_3_anti-crp.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=ChIPExo-Crp_wt_fructose_NH4Cl_O2_4_anti-crp.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=ChIPExo-Crp_wt_fructose_NH4Cl_O2_4_anti-crp.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=ChIPExo-Crp_wt_fructose_NH4Cl_O2_5_anti-crp.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=ChIPExo-Crp_wt_fructose_NH4Cl_O2_5_anti-crp.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=ChIPExo-Crp_wt_glucose_NH4Cl_O2_1_anti-crp.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=ChIPExo-Crp_wt_glucose_NH4Cl_O2_1_anti-crp.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=ChIPExo-Crp_wt_glucose_NH4Cl_O2_2_anti-crp.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=ChIPExo-Crp_wt_glucose_NH4Cl_O2_2_anti-crp.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=ChIPExo-Crp_wt_glycerol_NH4Cl_O2_1_anti-crp.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=ChIPExo-Crp_wt_glycerol_NH4Cl_O2_1_anti-crp.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=ChIPExo-Crp_wt_glycerol_NH4Cl_O2_1_anti-crp_rif.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=ChIPExo-Crp_wt_glycerol_NH4Cl_O2_1_anti-crp_rif.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=ChIPExo-Crp_wt_glycerol_NH4Cl_O2_2_anti-crp.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=ChIPExo-Crp_wt_glycerol_NH4Cl_O2_2_anti-crp.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=ChIPExo-Crp_wt_glycerol_NH4Cl_O2_2_anti-crp_rif.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=ChIPExo-Crp_wt_glycerol_NH4Cl_O2_2_anti-crp_rif.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=ChIPExo-Crp_wt_glycerol_NH4Cl_O2_3_anti-crp.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=ChIPExo-Crp_wt_glycerol_NH4Cl_O2_3_anti-crp.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=ChIPExo-Crp_wt_glycerol_NH4Cl_O2_3_anti-crp_rif.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=ChIPExo-Crp_wt_glycerol_NH4Cl_O2_3_anti-crp_rif.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=ChIPExo-Crp_wt_glycerol_NH4Cl_O2_4_anti-crp.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=ChIPExo-Crp_wt_glycerol_NH4Cl_O2_4_anti-crp.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=ChIPExo-Crp_wt_glycerol_NH4Cl_O2_5_anti-crp.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=ChIPExo-Crp_wt_glycerol_NH4Cl_O2_5_anti-crp.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=ChIPExo-Crp_wt_glycerol_NH4Cl_O2_6_anti-crp.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=ChIPExo-Crp_wt_glycerol_NH4Cl_O2_6_anti-crp.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=ChIPExo-Fnr_Fnr8myc_glucose_NH4Cl_anaerobic_1_anti-myc.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=ChIPExo-Fnr_Fnr8myc_glucose_NH4Cl_anaerobic_1_anti-myc.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=ChIPExo-Fnr_Fnr8myc_glucose_NH4Cl_anaerobic_2_anti-myc.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=ChIPExo-Fnr_Fnr8myc_glucose_NH4Cl_anaerobic_2_anti-myc.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=ChIPExo-Fnr_Fnr8myc_glucose_NH4Cl_anaerobic_3_anti-myc.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=ChIPExo-Fnr_Fnr8myc_glucose_NH4Cl_anaerobic_3_anti-myc.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=ChIPExo-RpoD_wt_fructose_NH4Cl_O2_1_anti-rpod.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=ChIPExo-RpoD_wt_fructose_NH4Cl_O2_1_anti-rpod.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=ChIPExo-RpoD_wt_fructose_NH4Cl_O2_2_anti-rpod.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=ChIPExo-RpoD_wt_fructose_NH4Cl_O2_2_anti-rpod.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=ChIPExo-RpoD_wt_fructose_NH4Cl_O2_3_anti-rpod.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=ChIPExo-RpoD_wt_fructose_NH4Cl_O2_3_anti-rpod.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=ChIPExo-RpoD_wt_glucose_NH4Cl_O2_1_anti-rpod.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=ChIPExo-RpoD_wt_glucose_NH4Cl_O2_1_anti-rpod.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=ChIPExo-RpoD_wt_glucose_NH4Cl_O2_2_anti-rpod.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=ChIPExo-RpoD_wt_glucose_NH4Cl_O2_2_anti-rpod.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=ChIPExo-RpoD_wt_glucose_NH4Cl_O2_3_anti-rpod.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=ChIPExo-RpoD_wt_glucose_NH4Cl_O2_3_anti-rpod.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=ChIPExo-RpoD_wt_glycerol_NH4Cl_O2_1_anti-rpod.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=ChIPExo-RpoD_wt_glycerol_NH4Cl_O2_1_anti-rpod.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=ChIPExo-RpoD_wt_glycerol_NH4Cl_O2_2_anti-rpod.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=ChIPExo-RpoD_wt_glycerol_NH4Cl_O2_2_anti-rpod.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=ChIPExo-RpoD_wt_glycerol_NH4Cl_O2_3_anti-rpod.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=ChIPExo-RpoD_wt_glycerol_NH4Cl_O2_3_anti-rpod.1x36mers.QC